Multiple sequence alignment - TraesCS6B01G237800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G237800 chr6B 100.000 4335 0 0 1 4335 413643008 413647342 0.000000e+00 8006
1 TraesCS6B01G237800 chr6A 94.364 3194 114 29 694 3849 377177984 377181149 0.000000e+00 4841
2 TraesCS6B01G237800 chr6A 95.248 484 14 1 3852 4335 377181475 377181949 0.000000e+00 758
3 TraesCS6B01G237800 chr6A 96.867 415 13 0 2 416 17903253 17903667 0.000000e+00 695
4 TraesCS6B01G237800 chr6A 91.930 285 11 6 416 688 377177584 377177868 5.260000e-104 388
5 TraesCS6B01G237800 chr6D 94.914 3067 104 26 1285 4335 266251695 266254725 0.000000e+00 4752
6 TraesCS6B01G237800 chr6D 91.304 874 28 15 416 1251 266250830 266251693 0.000000e+00 1149
7 TraesCS6B01G237800 chr7B 97.831 415 9 0 2 416 197001440 197001026 0.000000e+00 717
8 TraesCS6B01G237800 chr2A 97.826 414 9 0 2 415 52544522 52544935 0.000000e+00 715
9 TraesCS6B01G237800 chr2A 96.867 415 13 0 2 416 675099885 675100299 0.000000e+00 695
10 TraesCS6B01G237800 chr1B 97.590 415 10 0 2 416 15894424 15894010 0.000000e+00 712
11 TraesCS6B01G237800 chr1B 97.115 416 12 0 2 417 645549325 645548910 0.000000e+00 702
12 TraesCS6B01G237800 chr5B 96.941 425 10 2 2 424 63284932 63284509 0.000000e+00 710
13 TraesCS6B01G237800 chr3B 97.108 415 12 0 2 416 669433797 669433383 0.000000e+00 701
14 TraesCS6B01G237800 chr2B 96.643 417 14 0 2 418 57884159 57884575 0.000000e+00 693


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G237800 chr6B 413643008 413647342 4334 False 8006.000000 8006 100.000000 1 4335 1 chr6B.!!$F1 4334
1 TraesCS6B01G237800 chr6A 377177584 377181949 4365 False 1995.666667 4841 93.847333 416 4335 3 chr6A.!!$F2 3919
2 TraesCS6B01G237800 chr6D 266250830 266254725 3895 False 2950.500000 4752 93.109000 416 4335 2 chr6D.!!$F1 3919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.034186 TCAGCGCCCCTTCATCATTT 60.034 50.0 2.29 0.00 0.00 2.32 F
265 266 0.101759 CAGCGCCCCTTCATCATTTG 59.898 55.0 2.29 0.00 0.00 2.32 F
372 373 0.107508 AAGTGGCTGTATGCATCGCT 60.108 50.0 0.19 0.00 45.15 4.93 F
1289 1458 0.039617 CCTGCCGATTTGTTTTCGCA 60.040 50.0 0.00 0.00 35.31 5.10 F
2702 2875 0.111442 AAATTCGTTGTGTCGCGTCG 60.111 50.0 5.77 3.29 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1270 1439 0.039617 TGCGAAAACAAATCGGCAGG 60.040 50.000 0.00 0.0 40.54 4.85 R
1272 1441 0.382158 TGTGCGAAAACAAATCGGCA 59.618 45.000 0.00 0.0 40.54 5.69 R
1842 2015 1.304052 TGGATTTGGCGGGGACAAG 60.304 57.895 0.00 0.0 29.74 3.16 R
2788 2961 0.240945 GCGCCTGCAATGTACAGTTT 59.759 50.000 0.33 0.0 42.15 2.66 R
3773 3951 0.823460 CTCCCTCTCTCTGTCCTTGC 59.177 60.000 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.664677 GCTGTCTGGCGTCGTGGT 62.665 66.667 0.00 0.00 0.00 4.16
22 23 2.734723 CTGTCTGGCGTCGTGGTG 60.735 66.667 0.00 0.00 0.00 4.17
23 24 3.207547 CTGTCTGGCGTCGTGGTGA 62.208 63.158 0.00 0.00 0.00 4.02
24 25 2.733593 GTCTGGCGTCGTGGTGAC 60.734 66.667 0.00 0.00 44.53 3.67
31 32 3.750162 GTCGTGGTGACGTCGATG 58.250 61.111 11.62 2.26 46.20 3.84
32 33 1.800315 GTCGTGGTGACGTCGATGG 60.800 63.158 11.62 0.00 46.20 3.51
33 34 3.179265 CGTGGTGACGTCGATGGC 61.179 66.667 11.62 6.55 40.91 4.40
34 35 2.048597 GTGGTGACGTCGATGGCA 60.049 61.111 9.73 9.73 0.00 4.92
35 36 2.094659 GTGGTGACGTCGATGGCAG 61.095 63.158 15.03 0.00 0.00 4.85
36 37 2.272447 TGGTGACGTCGATGGCAGA 61.272 57.895 15.03 0.00 0.00 4.26
37 38 1.517257 GGTGACGTCGATGGCAGAG 60.517 63.158 15.03 0.00 0.00 3.35
38 39 1.506718 GTGACGTCGATGGCAGAGA 59.493 57.895 15.03 0.00 0.00 3.10
39 40 0.524392 GTGACGTCGATGGCAGAGAG 60.524 60.000 15.03 0.00 0.00 3.20
40 41 0.676782 TGACGTCGATGGCAGAGAGA 60.677 55.000 9.73 0.00 0.00 3.10
41 42 0.665835 GACGTCGATGGCAGAGAGAT 59.334 55.000 5.34 0.00 0.00 2.75
42 43 0.665835 ACGTCGATGGCAGAGAGATC 59.334 55.000 9.90 0.00 0.00 2.75
43 44 0.950836 CGTCGATGGCAGAGAGATCT 59.049 55.000 0.00 0.00 0.00 2.75
44 45 1.334870 CGTCGATGGCAGAGAGATCTG 60.335 57.143 0.00 0.83 40.51 2.90
45 46 1.000385 GTCGATGGCAGAGAGATCTGG 60.000 57.143 0.00 0.00 38.14 3.86
50 51 3.309052 GCAGAGAGATCTGGCATGG 57.691 57.895 0.00 0.00 38.14 3.66
51 52 0.469070 GCAGAGAGATCTGGCATGGT 59.531 55.000 0.00 0.00 38.14 3.55
52 53 1.690893 GCAGAGAGATCTGGCATGGTA 59.309 52.381 0.00 0.00 38.14 3.25
53 54 2.288948 GCAGAGAGATCTGGCATGGTAG 60.289 54.545 0.00 0.00 38.14 3.18
54 55 3.229293 CAGAGAGATCTGGCATGGTAGA 58.771 50.000 0.00 0.00 34.28 2.59
55 56 3.833650 CAGAGAGATCTGGCATGGTAGAT 59.166 47.826 0.00 0.00 36.41 1.98
56 57 3.833650 AGAGAGATCTGGCATGGTAGATG 59.166 47.826 0.00 0.00 33.97 2.90
57 58 2.302445 AGAGATCTGGCATGGTAGATGC 59.698 50.000 0.00 0.00 43.85 3.91
58 59 2.038164 GAGATCTGGCATGGTAGATGCA 59.962 50.000 0.00 0.00 46.21 3.96
59 60 2.440627 AGATCTGGCATGGTAGATGCAA 59.559 45.455 8.78 0.00 46.21 4.08
60 61 2.042686 TCTGGCATGGTAGATGCAAC 57.957 50.000 8.78 0.00 46.21 4.17
61 62 1.281577 TCTGGCATGGTAGATGCAACA 59.718 47.619 8.78 0.00 46.21 3.33
62 63 1.674441 CTGGCATGGTAGATGCAACAG 59.326 52.381 8.78 4.24 46.21 3.16
63 64 1.004628 TGGCATGGTAGATGCAACAGT 59.995 47.619 8.78 0.00 46.21 3.55
64 65 2.238395 TGGCATGGTAGATGCAACAGTA 59.762 45.455 8.78 0.00 46.21 2.74
65 66 2.614057 GGCATGGTAGATGCAACAGTAC 59.386 50.000 8.78 0.00 46.21 2.73
66 67 3.270027 GCATGGTAGATGCAACAGTACA 58.730 45.455 0.00 0.00 44.00 2.90
67 68 3.310774 GCATGGTAGATGCAACAGTACAG 59.689 47.826 0.00 0.00 44.00 2.74
68 69 2.972625 TGGTAGATGCAACAGTACAGC 58.027 47.619 0.00 0.00 0.00 4.40
69 70 2.567169 TGGTAGATGCAACAGTACAGCT 59.433 45.455 0.00 0.44 36.35 4.24
70 71 3.190874 GGTAGATGCAACAGTACAGCTC 58.809 50.000 0.00 0.00 33.87 4.09
71 72 3.118956 GGTAGATGCAACAGTACAGCTCT 60.119 47.826 0.00 2.26 33.87 4.09
72 73 4.098044 GGTAGATGCAACAGTACAGCTCTA 59.902 45.833 0.00 1.43 33.87 2.43
73 74 4.808414 AGATGCAACAGTACAGCTCTAA 57.192 40.909 0.00 0.00 0.00 2.10
74 75 5.152623 AGATGCAACAGTACAGCTCTAAA 57.847 39.130 0.00 0.00 0.00 1.85
75 76 5.174395 AGATGCAACAGTACAGCTCTAAAG 58.826 41.667 0.00 0.00 0.00 1.85
76 77 4.600692 TGCAACAGTACAGCTCTAAAGA 57.399 40.909 0.00 0.00 0.00 2.52
77 78 5.152623 TGCAACAGTACAGCTCTAAAGAT 57.847 39.130 0.00 0.00 0.00 2.40
78 79 4.931601 TGCAACAGTACAGCTCTAAAGATG 59.068 41.667 0.00 0.00 44.61 2.90
79 80 4.331168 GCAACAGTACAGCTCTAAAGATGG 59.669 45.833 0.00 0.00 43.33 3.51
80 81 5.724328 CAACAGTACAGCTCTAAAGATGGA 58.276 41.667 0.00 0.00 43.33 3.41
84 85 3.791973 ACAGCTCTAAAGATGGACTCG 57.208 47.619 0.00 0.00 43.33 4.18
85 86 3.093057 ACAGCTCTAAAGATGGACTCGT 58.907 45.455 0.00 0.00 43.33 4.18
86 87 3.119316 ACAGCTCTAAAGATGGACTCGTG 60.119 47.826 0.00 0.00 43.33 4.35
87 88 2.428890 AGCTCTAAAGATGGACTCGTGG 59.571 50.000 0.00 0.00 0.00 4.94
88 89 2.815478 CTCTAAAGATGGACTCGTGGC 58.185 52.381 0.00 0.00 0.00 5.01
89 90 2.166459 CTCTAAAGATGGACTCGTGGCA 59.834 50.000 0.00 0.00 0.00 4.92
90 91 2.166459 TCTAAAGATGGACTCGTGGCAG 59.834 50.000 0.00 0.00 0.00 4.85
91 92 0.036010 AAAGATGGACTCGTGGCAGG 60.036 55.000 0.00 0.00 0.00 4.85
92 93 1.194781 AAGATGGACTCGTGGCAGGT 61.195 55.000 7.12 0.00 0.00 4.00
93 94 1.448540 GATGGACTCGTGGCAGGTG 60.449 63.158 7.12 7.39 0.00 4.00
94 95 2.859273 GATGGACTCGTGGCAGGTGG 62.859 65.000 13.06 7.56 0.00 4.61
96 97 4.008933 GACTCGTGGCAGGTGGCT 62.009 66.667 13.06 0.00 44.01 4.75
97 98 4.320456 ACTCGTGGCAGGTGGCTG 62.320 66.667 13.06 0.00 44.01 4.85
111 112 4.937431 GCTGCGGGGGCCTCATAC 62.937 72.222 4.16 0.00 0.00 2.39
112 113 4.256180 CTGCGGGGGCCTCATACC 62.256 72.222 4.16 0.00 0.00 2.73
120 121 4.937431 GCCTCATACCCGGCAGGC 62.937 72.222 0.00 3.18 45.59 4.85
121 122 4.609018 CCTCATACCCGGCAGGCG 62.609 72.222 9.96 9.96 40.58 5.52
122 123 3.849951 CTCATACCCGGCAGGCGT 61.850 66.667 16.17 0.00 40.58 5.68
123 124 3.792053 CTCATACCCGGCAGGCGTC 62.792 68.421 16.17 0.00 40.58 5.19
124 125 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
134 135 3.885814 AGGCGTCCTGGTTGAGAA 58.114 55.556 0.00 0.00 29.57 2.87
135 136 1.674057 AGGCGTCCTGGTTGAGAAG 59.326 57.895 0.00 0.00 29.57 2.85
136 137 1.122019 AGGCGTCCTGGTTGAGAAGT 61.122 55.000 0.00 0.00 29.57 3.01
137 138 0.951040 GGCGTCCTGGTTGAGAAGTG 60.951 60.000 0.00 0.00 0.00 3.16
138 139 1.569479 GCGTCCTGGTTGAGAAGTGC 61.569 60.000 0.00 0.00 0.00 4.40
139 140 1.284982 CGTCCTGGTTGAGAAGTGCG 61.285 60.000 0.00 0.00 0.00 5.34
140 141 1.301716 TCCTGGTTGAGAAGTGCGC 60.302 57.895 0.00 0.00 0.00 6.09
141 142 2.328099 CCTGGTTGAGAAGTGCGCC 61.328 63.158 4.18 0.00 0.00 6.53
142 143 2.664851 TGGTTGAGAAGTGCGCCG 60.665 61.111 4.18 0.00 0.00 6.46
143 144 3.423154 GGTTGAGAAGTGCGCCGG 61.423 66.667 4.18 0.00 0.00 6.13
144 145 2.357034 GTTGAGAAGTGCGCCGGA 60.357 61.111 5.05 0.00 0.00 5.14
145 146 2.357034 TTGAGAAGTGCGCCGGAC 60.357 61.111 5.05 0.00 0.00 4.79
146 147 2.867855 TTGAGAAGTGCGCCGGACT 61.868 57.895 5.10 5.10 0.00 3.85
147 148 2.811317 GAGAAGTGCGCCGGACTG 60.811 66.667 13.22 0.00 0.00 3.51
148 149 4.379243 AGAAGTGCGCCGGACTGG 62.379 66.667 13.22 0.00 42.50 4.00
149 150 4.681978 GAAGTGCGCCGGACTGGT 62.682 66.667 13.22 0.00 41.21 4.00
150 151 3.291101 GAAGTGCGCCGGACTGGTA 62.291 63.158 13.22 0.00 41.21 3.25
151 152 3.296709 AAGTGCGCCGGACTGGTAG 62.297 63.158 13.22 0.00 41.21 3.18
152 153 4.814294 GTGCGCCGGACTGGTAGG 62.814 72.222 5.05 0.00 41.21 3.18
154 155 4.814294 GCGCCGGACTGGTAGGTG 62.814 72.222 5.05 4.62 41.21 4.00
155 156 4.814294 CGCCGGACTGGTAGGTGC 62.814 72.222 5.05 0.00 41.21 5.01
156 157 4.468689 GCCGGACTGGTAGGTGCC 62.469 72.222 5.05 0.00 41.21 5.01
157 158 3.782443 CCGGACTGGTAGGTGCCC 61.782 72.222 0.00 0.00 0.00 5.36
158 159 3.782443 CGGACTGGTAGGTGCCCC 61.782 72.222 0.00 0.00 0.00 5.80
159 160 2.609610 GGACTGGTAGGTGCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
160 161 2.001269 GGACTGGTAGGTGCCCCAT 61.001 63.158 0.00 0.00 0.00 4.00
161 162 0.693092 GGACTGGTAGGTGCCCCATA 60.693 60.000 0.00 0.00 0.00 2.74
162 163 0.468648 GACTGGTAGGTGCCCCATAC 59.531 60.000 0.00 0.00 0.00 2.39
163 164 0.986550 ACTGGTAGGTGCCCCATACC 60.987 60.000 7.24 7.24 36.14 2.73
164 165 0.986019 CTGGTAGGTGCCCCATACCA 60.986 60.000 14.09 14.09 39.84 3.25
165 166 0.986019 TGGTAGGTGCCCCATACCAG 60.986 60.000 11.63 0.00 38.50 4.00
166 167 1.705997 GGTAGGTGCCCCATACCAGG 61.706 65.000 8.87 0.00 40.74 4.45
172 173 4.569180 CCCCATACCAGGCAGGCG 62.569 72.222 0.00 0.00 43.14 5.52
173 174 3.797353 CCCATACCAGGCAGGCGT 61.797 66.667 0.00 0.00 43.14 5.68
174 175 2.203070 CCATACCAGGCAGGCGTC 60.203 66.667 0.00 0.00 43.14 5.19
175 176 2.203070 CATACCAGGCAGGCGTCC 60.203 66.667 0.00 0.00 43.14 4.79
176 177 2.365635 ATACCAGGCAGGCGTCCT 60.366 61.111 0.00 0.00 43.14 3.85
197 198 3.336138 GGTTGGAACCTCAGGTCTTAG 57.664 52.381 0.00 0.00 45.75 2.18
198 199 2.904434 GGTTGGAACCTCAGGTCTTAGA 59.096 50.000 0.00 0.00 45.75 2.10
199 200 3.519913 GGTTGGAACCTCAGGTCTTAGAT 59.480 47.826 0.00 0.00 45.75 1.98
200 201 4.508662 GTTGGAACCTCAGGTCTTAGATG 58.491 47.826 0.00 0.00 33.12 2.90
201 202 3.791320 TGGAACCTCAGGTCTTAGATGT 58.209 45.455 0.00 0.00 33.12 3.06
202 203 4.168101 TGGAACCTCAGGTCTTAGATGTT 58.832 43.478 0.00 0.00 33.12 2.71
203 204 4.597507 TGGAACCTCAGGTCTTAGATGTTT 59.402 41.667 0.00 0.00 33.12 2.83
204 205 5.783360 TGGAACCTCAGGTCTTAGATGTTTA 59.217 40.000 0.00 0.00 33.12 2.01
205 206 6.070767 TGGAACCTCAGGTCTTAGATGTTTAG 60.071 42.308 0.00 0.00 33.12 1.85
206 207 5.941555 ACCTCAGGTCTTAGATGTTTAGG 57.058 43.478 0.00 0.00 0.00 2.69
207 208 5.342866 ACCTCAGGTCTTAGATGTTTAGGT 58.657 41.667 0.00 0.00 0.00 3.08
208 209 5.785940 ACCTCAGGTCTTAGATGTTTAGGTT 59.214 40.000 0.00 0.00 29.47 3.50
209 210 6.272558 ACCTCAGGTCTTAGATGTTTAGGTTT 59.727 38.462 0.00 0.00 29.47 3.27
210 211 6.595716 CCTCAGGTCTTAGATGTTTAGGTTTG 59.404 42.308 0.00 0.00 0.00 2.93
211 212 6.472887 TCAGGTCTTAGATGTTTAGGTTTGG 58.527 40.000 0.00 0.00 0.00 3.28
212 213 5.123979 CAGGTCTTAGATGTTTAGGTTTGGC 59.876 44.000 0.00 0.00 0.00 4.52
213 214 5.014228 AGGTCTTAGATGTTTAGGTTTGGCT 59.986 40.000 0.00 0.00 0.00 4.75
214 215 5.123979 GGTCTTAGATGTTTAGGTTTGGCTG 59.876 44.000 0.00 0.00 0.00 4.85
215 216 4.700213 TCTTAGATGTTTAGGTTTGGCTGC 59.300 41.667 0.00 0.00 0.00 5.25
216 217 1.812571 AGATGTTTAGGTTTGGCTGCG 59.187 47.619 0.00 0.00 0.00 5.18
217 218 1.810151 GATGTTTAGGTTTGGCTGCGA 59.190 47.619 0.00 0.00 0.00 5.10
218 219 1.904287 TGTTTAGGTTTGGCTGCGAT 58.096 45.000 0.00 0.00 0.00 4.58
219 220 1.539388 TGTTTAGGTTTGGCTGCGATG 59.461 47.619 0.00 0.00 0.00 3.84
220 221 1.539827 GTTTAGGTTTGGCTGCGATGT 59.460 47.619 0.00 0.00 0.00 3.06
221 222 1.448985 TTAGGTTTGGCTGCGATGTC 58.551 50.000 0.00 0.00 0.00 3.06
222 223 0.613260 TAGGTTTGGCTGCGATGTCT 59.387 50.000 0.00 0.00 0.00 3.41
223 224 0.957395 AGGTTTGGCTGCGATGTCTG 60.957 55.000 0.00 0.00 0.00 3.51
224 225 1.237285 GGTTTGGCTGCGATGTCTGT 61.237 55.000 0.00 0.00 0.00 3.41
225 226 0.593128 GTTTGGCTGCGATGTCTGTT 59.407 50.000 0.00 0.00 0.00 3.16
226 227 1.001378 GTTTGGCTGCGATGTCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
227 228 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
228 229 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
229 230 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
230 231 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
231 232 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
232 233 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
233 234 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
234 235 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
235 236 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
236 237 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
237 238 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
238 239 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
239 240 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
240 241 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
241 242 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
242 243 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
243 244 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
244 245 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
245 246 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
246 247 5.163237 TGTTTGGTATTAGGCCCAGACTATC 60.163 44.000 0.00 0.00 36.91 2.08
247 248 4.207698 TGGTATTAGGCCCAGACTATCA 57.792 45.455 0.00 0.00 0.00 2.15
248 249 4.160329 TGGTATTAGGCCCAGACTATCAG 58.840 47.826 0.00 0.00 0.00 2.90
249 250 3.055747 GGTATTAGGCCCAGACTATCAGC 60.056 52.174 0.00 0.00 0.00 4.26
250 251 1.040646 TTAGGCCCAGACTATCAGCG 58.959 55.000 0.00 0.00 0.00 5.18
251 252 1.464376 TAGGCCCAGACTATCAGCGC 61.464 60.000 0.00 0.00 0.00 5.92
252 253 2.280457 GCCCAGACTATCAGCGCC 60.280 66.667 2.29 0.00 0.00 6.53
253 254 2.423446 CCCAGACTATCAGCGCCC 59.577 66.667 2.29 0.00 0.00 6.13
254 255 2.423446 CCAGACTATCAGCGCCCC 59.577 66.667 2.29 0.00 0.00 5.80
255 256 2.136878 CCAGACTATCAGCGCCCCT 61.137 63.158 2.29 0.00 0.00 4.79
256 257 1.690219 CCAGACTATCAGCGCCCCTT 61.690 60.000 2.29 0.00 0.00 3.95
257 258 0.249657 CAGACTATCAGCGCCCCTTC 60.250 60.000 2.29 0.00 0.00 3.46
258 259 0.687757 AGACTATCAGCGCCCCTTCA 60.688 55.000 2.29 0.00 0.00 3.02
259 260 0.394565 GACTATCAGCGCCCCTTCAT 59.605 55.000 2.29 0.00 0.00 2.57
260 261 0.394565 ACTATCAGCGCCCCTTCATC 59.605 55.000 2.29 0.00 0.00 2.92
261 262 0.394192 CTATCAGCGCCCCTTCATCA 59.606 55.000 2.29 0.00 0.00 3.07
262 263 1.002888 CTATCAGCGCCCCTTCATCAT 59.997 52.381 2.29 0.00 0.00 2.45
263 264 0.184451 ATCAGCGCCCCTTCATCATT 59.816 50.000 2.29 0.00 0.00 2.57
264 265 0.034186 TCAGCGCCCCTTCATCATTT 60.034 50.000 2.29 0.00 0.00 2.32
265 266 0.101759 CAGCGCCCCTTCATCATTTG 59.898 55.000 2.29 0.00 0.00 2.32
266 267 1.039233 AGCGCCCCTTCATCATTTGG 61.039 55.000 2.29 0.00 0.00 3.28
267 268 1.037030 GCGCCCCTTCATCATTTGGA 61.037 55.000 0.00 0.00 0.00 3.53
268 269 1.696063 CGCCCCTTCATCATTTGGAT 58.304 50.000 0.00 0.00 36.39 3.41
269 270 2.862541 CGCCCCTTCATCATTTGGATA 58.137 47.619 0.00 0.00 33.95 2.59
270 271 2.816087 CGCCCCTTCATCATTTGGATAG 59.184 50.000 0.00 0.00 33.95 2.08
271 272 2.560105 GCCCCTTCATCATTTGGATAGC 59.440 50.000 0.00 0.00 33.95 2.97
272 273 3.160269 CCCCTTCATCATTTGGATAGCC 58.840 50.000 0.00 0.00 33.95 3.93
273 274 2.816087 CCCTTCATCATTTGGATAGCCG 59.184 50.000 0.00 0.00 36.79 5.52
274 275 3.480470 CCTTCATCATTTGGATAGCCGT 58.520 45.455 0.00 0.00 36.79 5.68
275 276 4.504864 CCCTTCATCATTTGGATAGCCGTA 60.505 45.833 0.00 0.00 36.79 4.02
276 277 5.063204 CCTTCATCATTTGGATAGCCGTAA 58.937 41.667 0.00 0.00 36.79 3.18
277 278 5.049405 CCTTCATCATTTGGATAGCCGTAAC 60.049 44.000 0.00 0.00 36.79 2.50
278 279 4.055360 TCATCATTTGGATAGCCGTAACG 58.945 43.478 0.00 0.00 36.79 3.18
279 280 3.804786 TCATTTGGATAGCCGTAACGA 57.195 42.857 0.00 0.00 36.79 3.85
280 281 3.450578 TCATTTGGATAGCCGTAACGAC 58.549 45.455 0.00 0.00 36.79 4.34
281 282 3.119065 TCATTTGGATAGCCGTAACGACA 60.119 43.478 0.00 0.00 36.79 4.35
282 283 2.572191 TTGGATAGCCGTAACGACAG 57.428 50.000 0.00 0.00 36.79 3.51
283 284 1.466856 TGGATAGCCGTAACGACAGT 58.533 50.000 0.00 0.00 36.79 3.55
284 285 1.820519 TGGATAGCCGTAACGACAGTT 59.179 47.619 0.00 0.00 39.72 3.16
285 286 2.190981 GGATAGCCGTAACGACAGTTG 58.809 52.381 0.00 0.00 41.35 3.16
286 287 2.416431 GGATAGCCGTAACGACAGTTGT 60.416 50.000 0.00 0.00 41.35 3.32
287 288 2.798976 TAGCCGTAACGACAGTTGTT 57.201 45.000 11.13 11.13 41.35 2.83
288 289 1.214367 AGCCGTAACGACAGTTGTTG 58.786 50.000 15.61 0.00 41.35 3.33
289 290 0.383860 GCCGTAACGACAGTTGTTGC 60.384 55.000 15.61 13.19 41.35 4.17
290 291 1.214367 CCGTAACGACAGTTGTTGCT 58.786 50.000 15.61 0.00 41.35 3.91
291 292 1.595794 CCGTAACGACAGTTGTTGCTT 59.404 47.619 15.61 0.00 41.35 3.91
292 293 2.796031 CCGTAACGACAGTTGTTGCTTA 59.204 45.455 15.61 0.00 41.35 3.09
293 294 3.121126 CCGTAACGACAGTTGTTGCTTAG 60.121 47.826 15.61 2.96 41.35 2.18
294 295 3.732219 CGTAACGACAGTTGTTGCTTAGA 59.268 43.478 15.61 0.00 41.35 2.10
295 296 4.374707 CGTAACGACAGTTGTTGCTTAGAC 60.375 45.833 15.61 4.52 41.35 2.59
296 297 2.124903 ACGACAGTTGTTGCTTAGACG 58.875 47.619 0.00 0.00 32.66 4.18
297 298 1.455786 CGACAGTTGTTGCTTAGACGG 59.544 52.381 0.00 0.00 0.00 4.79
298 299 2.480845 GACAGTTGTTGCTTAGACGGT 58.519 47.619 0.00 0.00 0.00 4.83
299 300 2.210116 ACAGTTGTTGCTTAGACGGTG 58.790 47.619 0.00 0.00 0.00 4.94
300 301 2.159014 ACAGTTGTTGCTTAGACGGTGA 60.159 45.455 0.00 0.00 0.00 4.02
301 302 2.221055 CAGTTGTTGCTTAGACGGTGAC 59.779 50.000 0.00 0.00 0.00 3.67
302 303 2.102588 AGTTGTTGCTTAGACGGTGACT 59.897 45.455 0.00 0.00 0.00 3.41
303 304 2.870411 GTTGTTGCTTAGACGGTGACTT 59.130 45.455 0.00 0.00 0.00 3.01
304 305 3.188159 TGTTGCTTAGACGGTGACTTT 57.812 42.857 0.00 0.00 0.00 2.66
305 306 4.325028 TGTTGCTTAGACGGTGACTTTA 57.675 40.909 0.00 0.00 0.00 1.85
306 307 4.304110 TGTTGCTTAGACGGTGACTTTAG 58.696 43.478 0.00 0.00 0.00 1.85
307 308 4.202182 TGTTGCTTAGACGGTGACTTTAGT 60.202 41.667 0.00 0.00 0.00 2.24
308 309 4.170292 TGCTTAGACGGTGACTTTAGTC 57.830 45.455 2.92 2.92 44.97 2.59
309 310 3.825014 TGCTTAGACGGTGACTTTAGTCT 59.175 43.478 10.92 2.50 44.99 3.24
310 311 4.280174 TGCTTAGACGGTGACTTTAGTCTT 59.720 41.667 10.92 0.00 44.99 3.01
311 312 4.621886 GCTTAGACGGTGACTTTAGTCTTG 59.378 45.833 10.92 3.90 44.99 3.02
312 313 3.027974 AGACGGTGACTTTAGTCTTGC 57.972 47.619 10.92 2.34 44.99 4.01
313 314 2.628657 AGACGGTGACTTTAGTCTTGCT 59.371 45.455 10.92 0.14 44.99 3.91
314 315 2.731976 GACGGTGACTTTAGTCTTGCTG 59.268 50.000 10.92 8.52 44.99 4.41
315 316 2.102588 ACGGTGACTTTAGTCTTGCTGT 59.897 45.455 10.92 9.03 44.99 4.40
316 317 3.131396 CGGTGACTTTAGTCTTGCTGTT 58.869 45.455 10.92 0.00 44.99 3.16
317 318 3.059597 CGGTGACTTTAGTCTTGCTGTTG 60.060 47.826 10.92 0.00 44.99 3.33
318 319 3.877508 GGTGACTTTAGTCTTGCTGTTGT 59.122 43.478 10.92 0.00 44.99 3.32
319 320 5.054477 GGTGACTTTAGTCTTGCTGTTGTA 58.946 41.667 10.92 0.00 44.99 2.41
320 321 5.701290 GGTGACTTTAGTCTTGCTGTTGTAT 59.299 40.000 10.92 0.00 44.99 2.29
321 322 6.204882 GGTGACTTTAGTCTTGCTGTTGTATT 59.795 38.462 10.92 0.00 44.99 1.89
322 323 7.255139 GGTGACTTTAGTCTTGCTGTTGTATTT 60.255 37.037 10.92 0.00 44.99 1.40
323 324 7.798982 GTGACTTTAGTCTTGCTGTTGTATTTC 59.201 37.037 10.92 0.00 44.99 2.17
324 325 7.715249 TGACTTTAGTCTTGCTGTTGTATTTCT 59.285 33.333 10.92 0.00 44.99 2.52
325 326 8.451908 ACTTTAGTCTTGCTGTTGTATTTCTT 57.548 30.769 0.00 0.00 0.00 2.52
326 327 8.903820 ACTTTAGTCTTGCTGTTGTATTTCTTT 58.096 29.630 0.00 0.00 0.00 2.52
327 328 9.173939 CTTTAGTCTTGCTGTTGTATTTCTTTG 57.826 33.333 0.00 0.00 0.00 2.77
328 329 6.699575 AGTCTTGCTGTTGTATTTCTTTGT 57.300 33.333 0.00 0.00 0.00 2.83
329 330 7.801716 AGTCTTGCTGTTGTATTTCTTTGTA 57.198 32.000 0.00 0.00 0.00 2.41
330 331 8.220755 AGTCTTGCTGTTGTATTTCTTTGTAA 57.779 30.769 0.00 0.00 0.00 2.41
331 332 8.345565 AGTCTTGCTGTTGTATTTCTTTGTAAG 58.654 33.333 0.00 0.00 0.00 2.34
332 333 7.591426 GTCTTGCTGTTGTATTTCTTTGTAAGG 59.409 37.037 0.00 0.00 0.00 2.69
333 334 6.952773 TGCTGTTGTATTTCTTTGTAAGGT 57.047 33.333 0.00 0.00 0.00 3.50
334 335 6.966021 TGCTGTTGTATTTCTTTGTAAGGTC 58.034 36.000 0.00 0.00 0.00 3.85
335 336 6.770785 TGCTGTTGTATTTCTTTGTAAGGTCT 59.229 34.615 0.00 0.00 0.00 3.85
336 337 7.284489 TGCTGTTGTATTTCTTTGTAAGGTCTT 59.716 33.333 0.00 0.00 0.00 3.01
337 338 7.591426 GCTGTTGTATTTCTTTGTAAGGTCTTG 59.409 37.037 0.00 0.00 0.00 3.02
338 339 8.514330 TGTTGTATTTCTTTGTAAGGTCTTGT 57.486 30.769 0.00 0.00 0.00 3.16
339 340 8.402472 TGTTGTATTTCTTTGTAAGGTCTTGTG 58.598 33.333 0.00 0.00 0.00 3.33
340 341 8.617809 GTTGTATTTCTTTGTAAGGTCTTGTGA 58.382 33.333 0.00 0.00 0.00 3.58
341 342 8.378172 TGTATTTCTTTGTAAGGTCTTGTGAG 57.622 34.615 0.00 0.00 0.00 3.51
342 343 8.208224 TGTATTTCTTTGTAAGGTCTTGTGAGA 58.792 33.333 0.00 0.00 0.00 3.27
343 344 9.052759 GTATTTCTTTGTAAGGTCTTGTGAGAA 57.947 33.333 0.00 0.00 32.66 2.87
344 345 8.697507 ATTTCTTTGTAAGGTCTTGTGAGAAT 57.302 30.769 0.00 0.00 32.66 2.40
345 346 9.793259 ATTTCTTTGTAAGGTCTTGTGAGAATA 57.207 29.630 0.00 0.00 32.66 1.75
346 347 9.621629 TTTCTTTGTAAGGTCTTGTGAGAATAA 57.378 29.630 0.00 0.00 32.66 1.40
347 348 9.793259 TTCTTTGTAAGGTCTTGTGAGAATAAT 57.207 29.630 0.00 0.00 32.66 1.28
348 349 9.793259 TCTTTGTAAGGTCTTGTGAGAATAATT 57.207 29.630 0.00 0.00 32.66 1.40
362 363 9.461312 TGTGAGAATAATTAATAAAGTGGCTGT 57.539 29.630 0.00 0.00 0.00 4.40
370 371 4.818534 AATAAAGTGGCTGTATGCATCG 57.181 40.909 0.19 0.00 45.15 3.84
371 372 0.734889 AAAGTGGCTGTATGCATCGC 59.265 50.000 0.19 4.61 45.15 4.58
372 373 0.107508 AAGTGGCTGTATGCATCGCT 60.108 50.000 0.19 0.00 45.15 4.93
373 374 0.531532 AGTGGCTGTATGCATCGCTC 60.532 55.000 0.19 3.32 45.15 5.03
374 375 0.811219 GTGGCTGTATGCATCGCTCA 60.811 55.000 0.19 2.92 45.15 4.26
375 376 0.531311 TGGCTGTATGCATCGCTCAG 60.531 55.000 0.19 9.36 45.15 3.35
376 377 0.249615 GGCTGTATGCATCGCTCAGA 60.250 55.000 18.54 0.00 45.15 3.27
377 378 1.607509 GGCTGTATGCATCGCTCAGAT 60.608 52.381 18.54 0.00 45.15 2.90
385 386 1.069427 ATCGCTCAGATGCAGAGGC 59.931 57.895 3.87 0.00 38.36 4.70
386 387 2.380433 ATCGCTCAGATGCAGAGGCC 62.380 60.000 0.00 0.00 38.36 5.19
387 388 2.588439 GCTCAGATGCAGAGGCCA 59.412 61.111 5.01 0.00 40.13 5.36
388 389 1.524165 GCTCAGATGCAGAGGCCAG 60.524 63.158 5.01 0.00 40.13 4.85
389 390 1.146485 CTCAGATGCAGAGGCCAGG 59.854 63.158 5.01 0.00 40.13 4.45
390 391 2.192443 CAGATGCAGAGGCCAGGG 59.808 66.667 5.01 0.00 40.13 4.45
391 392 3.095163 AGATGCAGAGGCCAGGGG 61.095 66.667 5.01 0.00 40.13 4.79
392 393 3.415087 GATGCAGAGGCCAGGGGT 61.415 66.667 5.01 0.00 40.13 4.95
393 394 3.412624 GATGCAGAGGCCAGGGGTC 62.413 68.421 5.01 0.00 40.13 4.46
394 395 4.980592 TGCAGAGGCCAGGGGTCA 62.981 66.667 5.01 0.00 40.13 4.02
395 396 3.415087 GCAGAGGCCAGGGGTCAT 61.415 66.667 5.01 0.00 0.00 3.06
396 397 2.914289 CAGAGGCCAGGGGTCATC 59.086 66.667 5.01 0.00 0.00 2.92
397 398 2.367512 AGAGGCCAGGGGTCATCC 60.368 66.667 5.01 0.00 0.00 3.51
398 399 2.367512 GAGGCCAGGGGTCATCCT 60.368 66.667 5.01 0.00 37.71 3.24
399 400 2.367512 AGGCCAGGGGTCATCCTC 60.368 66.667 5.01 0.00 34.31 3.71
400 401 3.493303 GGCCAGGGGTCATCCTCC 61.493 72.222 0.00 0.00 33.94 4.30
401 402 2.367512 GCCAGGGGTCATCCTCCT 60.368 66.667 0.00 0.00 33.94 3.69
402 403 2.003548 GCCAGGGGTCATCCTCCTT 61.004 63.158 0.00 0.00 33.94 3.36
403 404 1.575447 GCCAGGGGTCATCCTCCTTT 61.575 60.000 0.00 0.00 33.94 3.11
404 405 1.002857 CCAGGGGTCATCCTCCTTTT 58.997 55.000 0.00 0.00 33.94 2.27
405 406 1.064389 CCAGGGGTCATCCTCCTTTTC 60.064 57.143 0.00 0.00 33.94 2.29
406 407 1.918957 CAGGGGTCATCCTCCTTTTCT 59.081 52.381 0.00 0.00 33.94 2.52
407 408 3.115390 CAGGGGTCATCCTCCTTTTCTA 58.885 50.000 0.00 0.00 33.94 2.10
408 409 3.523564 CAGGGGTCATCCTCCTTTTCTAA 59.476 47.826 0.00 0.00 33.94 2.10
409 410 4.018415 CAGGGGTCATCCTCCTTTTCTAAA 60.018 45.833 0.00 0.00 33.94 1.85
410 411 4.606255 AGGGGTCATCCTCCTTTTCTAAAA 59.394 41.667 0.00 0.00 33.94 1.52
411 412 5.075900 AGGGGTCATCCTCCTTTTCTAAAAA 59.924 40.000 0.00 0.00 33.94 1.94
448 449 7.875971 AGTATTGATTTTGAGCCGGAATTATC 58.124 34.615 5.05 0.00 0.00 1.75
581 604 4.482386 CATTTCTCTTGACTTGTGCATGG 58.518 43.478 0.00 0.00 0.00 3.66
590 613 3.286694 TTGTGCATGGCCCTCTCCC 62.287 63.158 0.00 0.00 0.00 4.30
601 624 2.780693 CTCTCCCCTCTGGTCCCA 59.219 66.667 0.00 0.00 34.77 4.37
623 646 2.554032 GTTTTCACATGTCCACCTCCAG 59.446 50.000 0.00 0.00 0.00 3.86
624 647 1.434188 TTCACATGTCCACCTCCAGT 58.566 50.000 0.00 0.00 0.00 4.00
731 864 4.060900 CGCATAGTTGGACTGCATATTCT 58.939 43.478 0.00 0.00 35.64 2.40
746 879 4.871822 CATATTCTTGTTCCCCTTCCCTT 58.128 43.478 0.00 0.00 0.00 3.95
907 1054 3.303395 GCTCACACAAAGTTAGCACTCAC 60.303 47.826 0.00 0.00 44.90 3.51
954 1101 0.478507 CAACCAACCAACCTCCTCCT 59.521 55.000 0.00 0.00 0.00 3.69
962 1109 0.545309 CAACCTCCTCCTCCCACTCA 60.545 60.000 0.00 0.00 0.00 3.41
1054 1206 1.682740 CTTCTACTCCTCCGACTCCC 58.317 60.000 0.00 0.00 0.00 4.30
1091 1243 0.943359 CTCATTCCGCGCCATCTCTC 60.943 60.000 0.00 0.00 0.00 3.20
1123 1286 2.202878 GTGCCTGATTCCGCGCTA 60.203 61.111 5.56 0.00 32.74 4.26
1218 1381 2.901192 TCTCCACAAGGTAATGGACGAA 59.099 45.455 0.00 0.00 40.17 3.85
1287 1456 0.596082 ACCCTGCCGATTTGTTTTCG 59.404 50.000 0.00 0.00 36.38 3.46
1288 1457 0.732538 CCCTGCCGATTTGTTTTCGC 60.733 55.000 0.00 0.00 35.31 4.70
1289 1458 0.039617 CCTGCCGATTTGTTTTCGCA 60.040 50.000 0.00 0.00 35.31 5.10
1311 1481 2.273370 TGTTACGATCGCAACCTCTC 57.727 50.000 24.53 4.04 0.00 3.20
1338 1508 9.618890 ATTGTTTCTCTAATCTTAGCTTGCATA 57.381 29.630 0.00 0.00 0.00 3.14
1371 1541 4.990426 GGATTGATTTCCTGGTTTGTGTTG 59.010 41.667 0.00 0.00 32.68 3.33
1374 1544 0.827368 TTTCCTGGTTTGTGTTGGCC 59.173 50.000 0.00 0.00 0.00 5.36
1406 1579 6.415573 TGAATCTCTTATCGATCGGATCCTA 58.584 40.000 16.41 0.00 36.55 2.94
1407 1580 7.057264 TGAATCTCTTATCGATCGGATCCTAT 58.943 38.462 16.41 3.90 36.55 2.57
1408 1581 7.558081 TGAATCTCTTATCGATCGGATCCTATT 59.442 37.037 16.41 7.57 36.55 1.73
1409 1582 6.928979 TCTCTTATCGATCGGATCCTATTC 57.071 41.667 16.41 2.89 36.55 1.75
1410 1583 5.823570 TCTCTTATCGATCGGATCCTATTCC 59.176 44.000 16.41 0.00 36.55 3.01
1411 1584 5.756918 TCTTATCGATCGGATCCTATTCCT 58.243 41.667 16.41 0.00 36.55 3.36
1412 1585 5.823570 TCTTATCGATCGGATCCTATTCCTC 59.176 44.000 16.41 0.00 36.55 3.71
1526 1699 2.652496 GACGTCATCGAGCTCGCC 60.652 66.667 30.97 16.43 40.62 5.54
2700 2873 0.931702 TCAAATTCGTTGTGTCGCGT 59.068 45.000 5.77 0.00 38.47 6.01
2701 2874 1.071107 TCAAATTCGTTGTGTCGCGTC 60.071 47.619 5.77 0.00 38.47 5.19
2702 2875 0.111442 AAATTCGTTGTGTCGCGTCG 60.111 50.000 5.77 3.29 0.00 5.12
2779 2952 5.188434 CAATGGAGAGTTCTAATCTGCCAA 58.812 41.667 0.00 0.00 34.50 4.52
2780 2953 4.908601 TGGAGAGTTCTAATCTGCCAAA 57.091 40.909 0.00 0.00 34.50 3.28
2781 2954 5.241403 TGGAGAGTTCTAATCTGCCAAAA 57.759 39.130 0.00 0.00 34.50 2.44
2782 2955 5.630121 TGGAGAGTTCTAATCTGCCAAAAA 58.370 37.500 0.00 0.00 34.50 1.94
2953 3126 4.878774 CTCTTCTTCGAGCACGCT 57.121 55.556 0.00 0.00 39.58 5.07
3253 3426 2.750350 CGGTTCAGGGCCTTCTGT 59.250 61.111 1.32 0.00 36.25 3.41
3410 3587 3.122780 GTCGCATATTTTTGTTGGGTTGC 59.877 43.478 0.00 0.00 0.00 4.17
3452 3629 5.485662 AGGTTGTTTTGTTTCTCTCTTCG 57.514 39.130 0.00 0.00 0.00 3.79
3520 3697 3.995048 GGAACTGCACAGGTTACTTCTAC 59.005 47.826 2.21 0.00 0.00 2.59
3558 3735 8.689251 ATTATACGAATCCATATCAACTGTCG 57.311 34.615 0.00 0.00 0.00 4.35
3559 3736 3.123804 ACGAATCCATATCAACTGTCGC 58.876 45.455 0.00 0.00 0.00 5.19
3560 3737 3.181475 ACGAATCCATATCAACTGTCGCT 60.181 43.478 0.00 0.00 0.00 4.93
3561 3738 3.183172 CGAATCCATATCAACTGTCGCTG 59.817 47.826 0.00 0.00 0.00 5.18
3567 3744 4.025396 CCATATCAACTGTCGCTGCTTTAG 60.025 45.833 0.00 0.00 0.00 1.85
3612 3789 1.811266 CAACCCGATCGAGTGGCAG 60.811 63.158 18.66 1.86 0.00 4.85
3674 3852 9.608617 CGAATCATGTTTGATAGTACTACGTAT 57.391 33.333 4.31 0.00 41.83 3.06
3710 3888 3.118261 TCCATCACCAAGCACTATCTTCC 60.118 47.826 0.00 0.00 0.00 3.46
3789 3967 2.566724 AGAAAGCAAGGACAGAGAGAGG 59.433 50.000 0.00 0.00 0.00 3.69
3800 3978 3.189606 ACAGAGAGAGGGAGAGAGAGAA 58.810 50.000 0.00 0.00 0.00 2.87
3849 4028 5.296780 GGAGAATCAAATGCACCGAAGATAA 59.703 40.000 0.00 0.00 36.25 1.75
3850 4029 6.124088 AGAATCAAATGCACCGAAGATAAC 57.876 37.500 0.00 0.00 0.00 1.89
4007 4509 2.594303 CAACCACCGAGCCAGCAA 60.594 61.111 0.00 0.00 0.00 3.91
4046 4548 1.065053 TGCCCTAATTTTCTAGGCGCA 60.065 47.619 10.83 8.05 40.22 6.09
4179 4681 5.990668 AGAAATTTCTTCGCTAGGGTACAT 58.009 37.500 15.11 0.00 32.55 2.29
4211 4713 7.746475 GCAACATCTACCGATTTGCTATTATTC 59.254 37.037 0.00 0.00 38.78 1.75
4291 4793 5.105392 TGCCAATGTCCCATCTTAATTGTTC 60.105 40.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.734723 CACCACGACGCCAGACAG 60.735 66.667 0.00 0.00 0.00 3.51
6 7 3.220658 TCACCACGACGCCAGACA 61.221 61.111 0.00 0.00 0.00 3.41
17 18 2.048597 TGCCATCGACGTCACCAC 60.049 61.111 17.16 0.96 0.00 4.16
18 19 2.212900 CTCTGCCATCGACGTCACCA 62.213 60.000 17.16 0.00 0.00 4.17
19 20 1.517257 CTCTGCCATCGACGTCACC 60.517 63.158 17.16 0.00 0.00 4.02
20 21 0.524392 CTCTCTGCCATCGACGTCAC 60.524 60.000 17.16 0.00 0.00 3.67
21 22 0.676782 TCTCTCTGCCATCGACGTCA 60.677 55.000 17.16 3.13 0.00 4.35
22 23 0.665835 ATCTCTCTGCCATCGACGTC 59.334 55.000 5.18 5.18 0.00 4.34
23 24 0.665835 GATCTCTCTGCCATCGACGT 59.334 55.000 0.00 0.00 0.00 4.34
24 25 0.950836 AGATCTCTCTGCCATCGACG 59.049 55.000 0.00 0.00 0.00 5.12
25 26 1.000385 CCAGATCTCTCTGCCATCGAC 60.000 57.143 0.00 0.00 46.39 4.20
26 27 1.326328 CCAGATCTCTCTGCCATCGA 58.674 55.000 0.00 0.00 46.39 3.59
27 28 0.319727 GCCAGATCTCTCTGCCATCG 60.320 60.000 0.00 0.00 46.39 3.84
28 29 0.757512 TGCCAGATCTCTCTGCCATC 59.242 55.000 0.00 0.00 46.39 3.51
29 30 1.072489 CATGCCAGATCTCTCTGCCAT 59.928 52.381 0.00 0.00 45.76 4.40
30 31 0.468648 CATGCCAGATCTCTCTGCCA 59.531 55.000 0.00 0.00 46.39 4.92
31 32 0.250381 CCATGCCAGATCTCTCTGCC 60.250 60.000 0.00 0.00 46.39 4.85
32 33 0.469070 ACCATGCCAGATCTCTCTGC 59.531 55.000 0.00 0.00 46.39 4.26
34 35 3.609256 TCTACCATGCCAGATCTCTCT 57.391 47.619 0.00 0.00 0.00 3.10
35 36 3.617045 GCATCTACCATGCCAGATCTCTC 60.617 52.174 0.00 0.00 39.01 3.20
36 37 2.302445 GCATCTACCATGCCAGATCTCT 59.698 50.000 0.00 0.00 39.01 3.10
37 38 2.038164 TGCATCTACCATGCCAGATCTC 59.962 50.000 4.18 2.25 43.94 2.75
38 39 2.052468 TGCATCTACCATGCCAGATCT 58.948 47.619 4.18 0.00 43.94 2.75
39 40 2.551459 GTTGCATCTACCATGCCAGATC 59.449 50.000 4.18 0.00 43.94 2.75
40 41 2.092267 TGTTGCATCTACCATGCCAGAT 60.092 45.455 4.18 2.34 43.94 2.90
41 42 1.281577 TGTTGCATCTACCATGCCAGA 59.718 47.619 4.18 0.00 43.94 3.86
42 43 1.674441 CTGTTGCATCTACCATGCCAG 59.326 52.381 4.18 2.05 43.94 4.85
43 44 1.004628 ACTGTTGCATCTACCATGCCA 59.995 47.619 4.18 0.00 43.94 4.92
44 45 1.755179 ACTGTTGCATCTACCATGCC 58.245 50.000 4.18 0.00 43.94 4.40
45 46 3.270027 TGTACTGTTGCATCTACCATGC 58.730 45.455 0.00 0.00 44.76 4.06
46 47 3.310774 GCTGTACTGTTGCATCTACCATG 59.689 47.826 1.46 0.00 0.00 3.66
47 48 3.198635 AGCTGTACTGTTGCATCTACCAT 59.801 43.478 1.46 0.00 0.00 3.55
48 49 2.567169 AGCTGTACTGTTGCATCTACCA 59.433 45.455 1.46 0.00 0.00 3.25
49 50 3.118956 AGAGCTGTACTGTTGCATCTACC 60.119 47.826 0.00 0.00 0.00 3.18
50 51 4.116747 AGAGCTGTACTGTTGCATCTAC 57.883 45.455 0.00 0.00 0.00 2.59
51 52 5.914898 TTAGAGCTGTACTGTTGCATCTA 57.085 39.130 0.00 4.59 0.00 1.98
52 53 4.808414 TTAGAGCTGTACTGTTGCATCT 57.192 40.909 0.00 5.32 0.00 2.90
53 54 5.171476 TCTTTAGAGCTGTACTGTTGCATC 58.829 41.667 0.00 0.00 0.00 3.91
54 55 5.152623 TCTTTAGAGCTGTACTGTTGCAT 57.847 39.130 0.00 0.00 0.00 3.96
55 56 4.600692 TCTTTAGAGCTGTACTGTTGCA 57.399 40.909 0.00 0.00 0.00 4.08
56 57 4.331168 CCATCTTTAGAGCTGTACTGTTGC 59.669 45.833 0.00 0.00 0.00 4.17
57 58 5.578727 GTCCATCTTTAGAGCTGTACTGTTG 59.421 44.000 0.00 0.00 0.00 3.33
58 59 5.482175 AGTCCATCTTTAGAGCTGTACTGTT 59.518 40.000 0.00 0.00 0.00 3.16
59 60 5.020132 AGTCCATCTTTAGAGCTGTACTGT 58.980 41.667 0.00 0.00 0.00 3.55
60 61 5.587289 GAGTCCATCTTTAGAGCTGTACTG 58.413 45.833 0.00 0.00 0.00 2.74
61 62 4.336993 CGAGTCCATCTTTAGAGCTGTACT 59.663 45.833 0.00 0.00 0.00 2.73
62 63 4.096682 ACGAGTCCATCTTTAGAGCTGTAC 59.903 45.833 0.00 0.00 0.00 2.90
63 64 4.096532 CACGAGTCCATCTTTAGAGCTGTA 59.903 45.833 0.00 0.00 0.00 2.74
64 65 3.093057 ACGAGTCCATCTTTAGAGCTGT 58.907 45.455 0.00 0.00 0.00 4.40
65 66 3.443037 CACGAGTCCATCTTTAGAGCTG 58.557 50.000 0.00 0.00 0.00 4.24
66 67 2.428890 CCACGAGTCCATCTTTAGAGCT 59.571 50.000 0.00 0.00 0.00 4.09
67 68 2.815478 CCACGAGTCCATCTTTAGAGC 58.185 52.381 0.00 0.00 0.00 4.09
68 69 2.166459 TGCCACGAGTCCATCTTTAGAG 59.834 50.000 0.00 0.00 0.00 2.43
69 70 2.166459 CTGCCACGAGTCCATCTTTAGA 59.834 50.000 0.00 0.00 0.00 2.10
70 71 2.544685 CTGCCACGAGTCCATCTTTAG 58.455 52.381 0.00 0.00 0.00 1.85
71 72 1.207089 CCTGCCACGAGTCCATCTTTA 59.793 52.381 0.00 0.00 0.00 1.85
72 73 0.036010 CCTGCCACGAGTCCATCTTT 60.036 55.000 0.00 0.00 0.00 2.52
73 74 1.194781 ACCTGCCACGAGTCCATCTT 61.195 55.000 0.00 0.00 0.00 2.40
74 75 1.610673 ACCTGCCACGAGTCCATCT 60.611 57.895 0.00 0.00 0.00 2.90
75 76 1.448540 CACCTGCCACGAGTCCATC 60.449 63.158 0.00 0.00 0.00 3.51
76 77 2.665000 CACCTGCCACGAGTCCAT 59.335 61.111 0.00 0.00 0.00 3.41
77 78 3.625897 CCACCTGCCACGAGTCCA 61.626 66.667 0.00 0.00 0.00 4.02
79 80 4.008933 AGCCACCTGCCACGAGTC 62.009 66.667 0.00 0.00 42.71 3.36
80 81 4.320456 CAGCCACCTGCCACGAGT 62.320 66.667 0.00 0.00 42.71 4.18
94 95 4.937431 GTATGAGGCCCCCGCAGC 62.937 72.222 0.00 0.00 36.65 5.25
95 96 4.256180 GGTATGAGGCCCCCGCAG 62.256 72.222 0.00 0.00 36.65 5.18
104 105 4.609018 CGCCTGCCGGGTATGAGG 62.609 72.222 2.18 0.00 37.43 3.86
105 106 3.792053 GACGCCTGCCGGGTATGAG 62.792 68.421 2.18 0.00 42.52 2.90
106 107 3.845259 GACGCCTGCCGGGTATGA 61.845 66.667 2.18 0.00 42.52 2.15
107 108 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
117 118 1.122019 ACTTCTCAACCAGGACGCCT 61.122 55.000 0.00 0.00 0.00 5.52
118 119 0.951040 CACTTCTCAACCAGGACGCC 60.951 60.000 0.00 0.00 0.00 5.68
119 120 1.569479 GCACTTCTCAACCAGGACGC 61.569 60.000 0.00 0.00 0.00 5.19
120 121 1.284982 CGCACTTCTCAACCAGGACG 61.285 60.000 0.00 0.00 0.00 4.79
121 122 1.569479 GCGCACTTCTCAACCAGGAC 61.569 60.000 0.30 0.00 0.00 3.85
122 123 1.301716 GCGCACTTCTCAACCAGGA 60.302 57.895 0.30 0.00 0.00 3.86
123 124 2.328099 GGCGCACTTCTCAACCAGG 61.328 63.158 10.83 0.00 0.00 4.45
124 125 2.671177 CGGCGCACTTCTCAACCAG 61.671 63.158 10.83 0.00 0.00 4.00
125 126 2.664851 CGGCGCACTTCTCAACCA 60.665 61.111 10.83 0.00 0.00 3.67
126 127 3.423154 CCGGCGCACTTCTCAACC 61.423 66.667 10.83 0.00 0.00 3.77
127 128 2.357034 TCCGGCGCACTTCTCAAC 60.357 61.111 10.83 0.00 0.00 3.18
128 129 2.357034 GTCCGGCGCACTTCTCAA 60.357 61.111 10.83 0.00 0.00 3.02
129 130 3.303135 AGTCCGGCGCACTTCTCA 61.303 61.111 10.83 0.00 0.00 3.27
130 131 2.811317 CAGTCCGGCGCACTTCTC 60.811 66.667 10.83 0.00 0.00 2.87
131 132 4.379243 CCAGTCCGGCGCACTTCT 62.379 66.667 10.83 0.00 0.00 2.85
132 133 3.291101 TACCAGTCCGGCGCACTTC 62.291 63.158 10.83 0.00 39.03 3.01
133 134 3.296709 CTACCAGTCCGGCGCACTT 62.297 63.158 10.83 0.00 39.03 3.16
134 135 3.760035 CTACCAGTCCGGCGCACT 61.760 66.667 10.83 0.00 39.03 4.40
135 136 4.814294 CCTACCAGTCCGGCGCAC 62.814 72.222 10.83 0.00 39.03 5.34
137 138 4.814294 CACCTACCAGTCCGGCGC 62.814 72.222 0.00 0.00 39.03 6.53
138 139 4.814294 GCACCTACCAGTCCGGCG 62.814 72.222 0.00 0.00 39.03 6.46
139 140 4.468689 GGCACCTACCAGTCCGGC 62.469 72.222 0.00 0.00 39.03 6.13
155 156 4.569180 CGCCTGCCTGGTATGGGG 62.569 72.222 0.00 0.16 38.35 4.96
156 157 3.757248 GACGCCTGCCTGGTATGGG 62.757 68.421 0.00 0.00 38.35 4.00
157 158 2.203070 GACGCCTGCCTGGTATGG 60.203 66.667 0.00 0.00 38.35 2.74
158 159 2.203070 GGACGCCTGCCTGGTATG 60.203 66.667 0.00 0.00 38.35 2.39
159 160 2.365635 AGGACGCCTGCCTGGTAT 60.366 61.111 0.00 0.00 38.35 2.73
178 179 4.020128 ACATCTAAGACCTGAGGTTCCAAC 60.020 45.833 5.21 0.00 35.25 3.77
179 180 4.168101 ACATCTAAGACCTGAGGTTCCAA 58.832 43.478 5.21 0.00 35.25 3.53
180 181 3.791320 ACATCTAAGACCTGAGGTTCCA 58.209 45.455 5.21 0.00 35.25 3.53
181 182 4.828072 AACATCTAAGACCTGAGGTTCC 57.172 45.455 5.21 0.00 35.25 3.62
182 183 6.070710 ACCTAAACATCTAAGACCTGAGGTTC 60.071 42.308 5.21 0.00 36.40 3.62
183 184 5.785940 ACCTAAACATCTAAGACCTGAGGTT 59.214 40.000 5.21 0.00 38.57 3.50
184 185 5.342866 ACCTAAACATCTAAGACCTGAGGT 58.657 41.667 2.41 2.41 39.44 3.85
185 186 5.941555 ACCTAAACATCTAAGACCTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
186 187 6.595716 CCAAACCTAAACATCTAAGACCTGAG 59.404 42.308 0.00 0.00 0.00 3.35
187 188 6.472887 CCAAACCTAAACATCTAAGACCTGA 58.527 40.000 0.00 0.00 0.00 3.86
188 189 5.123979 GCCAAACCTAAACATCTAAGACCTG 59.876 44.000 0.00 0.00 0.00 4.00
189 190 5.014228 AGCCAAACCTAAACATCTAAGACCT 59.986 40.000 0.00 0.00 0.00 3.85
190 191 5.123979 CAGCCAAACCTAAACATCTAAGACC 59.876 44.000 0.00 0.00 0.00 3.85
191 192 5.392057 GCAGCCAAACCTAAACATCTAAGAC 60.392 44.000 0.00 0.00 0.00 3.01
192 193 4.700213 GCAGCCAAACCTAAACATCTAAGA 59.300 41.667 0.00 0.00 0.00 2.10
193 194 4.437390 CGCAGCCAAACCTAAACATCTAAG 60.437 45.833 0.00 0.00 0.00 2.18
194 195 3.438781 CGCAGCCAAACCTAAACATCTAA 59.561 43.478 0.00 0.00 0.00 2.10
195 196 3.006940 CGCAGCCAAACCTAAACATCTA 58.993 45.455 0.00 0.00 0.00 1.98
196 197 1.812571 CGCAGCCAAACCTAAACATCT 59.187 47.619 0.00 0.00 0.00 2.90
197 198 1.810151 TCGCAGCCAAACCTAAACATC 59.190 47.619 0.00 0.00 0.00 3.06
198 199 1.904287 TCGCAGCCAAACCTAAACAT 58.096 45.000 0.00 0.00 0.00 2.71
199 200 1.539388 CATCGCAGCCAAACCTAAACA 59.461 47.619 0.00 0.00 0.00 2.83
200 201 1.539827 ACATCGCAGCCAAACCTAAAC 59.460 47.619 0.00 0.00 0.00 2.01
201 202 1.810151 GACATCGCAGCCAAACCTAAA 59.190 47.619 0.00 0.00 0.00 1.85
202 203 1.003118 AGACATCGCAGCCAAACCTAA 59.997 47.619 0.00 0.00 0.00 2.69
203 204 0.613260 AGACATCGCAGCCAAACCTA 59.387 50.000 0.00 0.00 0.00 3.08
204 205 0.957395 CAGACATCGCAGCCAAACCT 60.957 55.000 0.00 0.00 0.00 3.50
205 206 1.237285 ACAGACATCGCAGCCAAACC 61.237 55.000 0.00 0.00 0.00 3.27
206 207 0.593128 AACAGACATCGCAGCCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
207 208 1.001487 CAAACAGACATCGCAGCCAAA 60.001 47.619 0.00 0.00 0.00 3.28
208 209 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
209 210 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
210 211 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
211 212 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
212 213 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
213 214 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
214 215 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
215 216 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
216 217 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
217 218 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
218 219 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
219 220 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
220 221 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
221 222 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
222 223 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
223 224 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
224 225 4.972568 TGATAGTCTGGGCCTAATACCAAA 59.027 41.667 4.53 0.00 36.09 3.28
225 226 4.562767 TGATAGTCTGGGCCTAATACCAA 58.437 43.478 4.53 0.00 36.09 3.67
226 227 4.160329 CTGATAGTCTGGGCCTAATACCA 58.840 47.826 4.53 0.00 35.05 3.25
227 228 3.055747 GCTGATAGTCTGGGCCTAATACC 60.056 52.174 4.53 0.00 0.00 2.73
228 229 3.367498 CGCTGATAGTCTGGGCCTAATAC 60.367 52.174 4.53 0.00 0.00 1.89
229 230 2.826128 CGCTGATAGTCTGGGCCTAATA 59.174 50.000 4.53 0.00 0.00 0.98
230 231 1.620819 CGCTGATAGTCTGGGCCTAAT 59.379 52.381 4.53 0.00 0.00 1.73
231 232 1.040646 CGCTGATAGTCTGGGCCTAA 58.959 55.000 4.53 0.00 0.00 2.69
232 233 1.464376 GCGCTGATAGTCTGGGCCTA 61.464 60.000 4.53 0.00 44.44 3.93
233 234 2.801631 GCGCTGATAGTCTGGGCCT 61.802 63.158 4.53 0.00 44.44 5.19
234 235 2.280457 GCGCTGATAGTCTGGGCC 60.280 66.667 0.00 0.00 44.44 5.80
236 237 2.423446 GGGCGCTGATAGTCTGGG 59.577 66.667 7.64 0.00 0.00 4.45
237 238 1.690219 AAGGGGCGCTGATAGTCTGG 61.690 60.000 7.64 0.00 0.00 3.86
238 239 0.249657 GAAGGGGCGCTGATAGTCTG 60.250 60.000 7.64 0.00 0.00 3.51
239 240 0.687757 TGAAGGGGCGCTGATAGTCT 60.688 55.000 7.64 0.00 0.00 3.24
240 241 0.394565 ATGAAGGGGCGCTGATAGTC 59.605 55.000 7.64 0.00 0.00 2.59
241 242 0.394565 GATGAAGGGGCGCTGATAGT 59.605 55.000 7.64 0.00 0.00 2.12
242 243 0.394192 TGATGAAGGGGCGCTGATAG 59.606 55.000 7.64 0.00 0.00 2.08
243 244 1.059098 ATGATGAAGGGGCGCTGATA 58.941 50.000 7.64 0.00 0.00 2.15
244 245 0.184451 AATGATGAAGGGGCGCTGAT 59.816 50.000 7.64 0.00 0.00 2.90
245 246 0.034186 AAATGATGAAGGGGCGCTGA 60.034 50.000 7.64 0.00 0.00 4.26
246 247 0.101759 CAAATGATGAAGGGGCGCTG 59.898 55.000 7.64 0.00 0.00 5.18
247 248 1.039233 CCAAATGATGAAGGGGCGCT 61.039 55.000 7.64 0.00 0.00 5.92
248 249 1.037030 TCCAAATGATGAAGGGGCGC 61.037 55.000 0.00 0.00 0.00 6.53
249 250 1.696063 ATCCAAATGATGAAGGGGCG 58.304 50.000 0.00 0.00 30.54 6.13
250 251 2.560105 GCTATCCAAATGATGAAGGGGC 59.440 50.000 0.00 0.00 34.76 5.80
251 252 3.160269 GGCTATCCAAATGATGAAGGGG 58.840 50.000 0.00 0.00 34.76 4.79
252 253 2.816087 CGGCTATCCAAATGATGAAGGG 59.184 50.000 0.00 0.00 34.76 3.95
253 254 3.480470 ACGGCTATCCAAATGATGAAGG 58.520 45.455 0.00 0.00 34.76 3.46
254 255 5.333339 CGTTACGGCTATCCAAATGATGAAG 60.333 44.000 0.00 0.00 34.76 3.02
255 256 4.509970 CGTTACGGCTATCCAAATGATGAA 59.490 41.667 0.00 0.00 34.76 2.57
256 257 4.055360 CGTTACGGCTATCCAAATGATGA 58.945 43.478 0.00 0.00 34.76 2.92
257 258 4.055360 TCGTTACGGCTATCCAAATGATG 58.945 43.478 4.53 0.00 34.76 3.07
258 259 4.056050 GTCGTTACGGCTATCCAAATGAT 58.944 43.478 0.79 0.00 37.49 2.45
259 260 3.119065 TGTCGTTACGGCTATCCAAATGA 60.119 43.478 11.45 0.00 30.55 2.57
260 261 3.191669 TGTCGTTACGGCTATCCAAATG 58.808 45.455 11.45 0.00 30.55 2.32
261 262 3.118884 ACTGTCGTTACGGCTATCCAAAT 60.119 43.478 11.45 0.00 35.17 2.32
262 263 2.231964 ACTGTCGTTACGGCTATCCAAA 59.768 45.455 11.45 0.00 35.17 3.28
263 264 1.820519 ACTGTCGTTACGGCTATCCAA 59.179 47.619 11.45 0.00 35.17 3.53
264 265 1.466856 ACTGTCGTTACGGCTATCCA 58.533 50.000 11.45 0.00 35.17 3.41
265 266 2.190981 CAACTGTCGTTACGGCTATCC 58.809 52.381 11.45 0.00 35.17 2.59
266 267 2.872370 ACAACTGTCGTTACGGCTATC 58.128 47.619 11.45 0.00 35.17 2.08
267 268 2.991190 CAACAACTGTCGTTACGGCTAT 59.009 45.455 11.45 0.00 35.17 2.97
268 269 2.396601 CAACAACTGTCGTTACGGCTA 58.603 47.619 11.45 0.00 35.17 3.93
269 270 1.214367 CAACAACTGTCGTTACGGCT 58.786 50.000 11.45 0.00 35.17 5.52
270 271 0.383860 GCAACAACTGTCGTTACGGC 60.384 55.000 1.11 1.11 35.17 5.68
271 272 1.214367 AGCAACAACTGTCGTTACGG 58.786 50.000 4.53 0.00 38.04 4.02
272 273 3.732219 TCTAAGCAACAACTGTCGTTACG 59.268 43.478 0.00 0.00 0.00 3.18
273 274 4.374707 CGTCTAAGCAACAACTGTCGTTAC 60.375 45.833 0.00 0.00 0.00 2.50
274 275 3.732219 CGTCTAAGCAACAACTGTCGTTA 59.268 43.478 0.00 0.00 0.00 3.18
275 276 2.538449 CGTCTAAGCAACAACTGTCGTT 59.462 45.455 0.00 0.00 0.00 3.85
276 277 2.124903 CGTCTAAGCAACAACTGTCGT 58.875 47.619 0.00 0.00 0.00 4.34
277 278 1.455786 CCGTCTAAGCAACAACTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
278 279 2.221055 CACCGTCTAAGCAACAACTGTC 59.779 50.000 0.00 0.00 0.00 3.51
279 280 2.159014 TCACCGTCTAAGCAACAACTGT 60.159 45.455 0.00 0.00 0.00 3.55
280 281 2.221055 GTCACCGTCTAAGCAACAACTG 59.779 50.000 0.00 0.00 0.00 3.16
281 282 2.102588 AGTCACCGTCTAAGCAACAACT 59.897 45.455 0.00 0.00 0.00 3.16
282 283 2.480845 AGTCACCGTCTAAGCAACAAC 58.519 47.619 0.00 0.00 0.00 3.32
283 284 2.902705 AGTCACCGTCTAAGCAACAA 57.097 45.000 0.00 0.00 0.00 2.83
284 285 2.902705 AAGTCACCGTCTAAGCAACA 57.097 45.000 0.00 0.00 0.00 3.33
285 286 4.304939 ACTAAAGTCACCGTCTAAGCAAC 58.695 43.478 0.00 0.00 0.00 4.17
286 287 4.553323 GACTAAAGTCACCGTCTAAGCAA 58.447 43.478 5.24 0.00 44.18 3.91
287 288 4.170292 GACTAAAGTCACCGTCTAAGCA 57.830 45.455 5.24 0.00 44.18 3.91
299 300 8.089115 AGAAATACAACAGCAAGACTAAAGTC 57.911 34.615 1.72 1.72 45.08 3.01
300 301 8.451908 AAGAAATACAACAGCAAGACTAAAGT 57.548 30.769 0.00 0.00 0.00 2.66
301 302 9.173939 CAAAGAAATACAACAGCAAGACTAAAG 57.826 33.333 0.00 0.00 0.00 1.85
302 303 8.682710 ACAAAGAAATACAACAGCAAGACTAAA 58.317 29.630 0.00 0.00 0.00 1.85
303 304 8.220755 ACAAAGAAATACAACAGCAAGACTAA 57.779 30.769 0.00 0.00 0.00 2.24
304 305 7.801716 ACAAAGAAATACAACAGCAAGACTA 57.198 32.000 0.00 0.00 0.00 2.59
305 306 6.699575 ACAAAGAAATACAACAGCAAGACT 57.300 33.333 0.00 0.00 0.00 3.24
306 307 7.591426 CCTTACAAAGAAATACAACAGCAAGAC 59.409 37.037 0.00 0.00 0.00 3.01
307 308 7.284489 ACCTTACAAAGAAATACAACAGCAAGA 59.716 33.333 0.00 0.00 0.00 3.02
308 309 7.425606 ACCTTACAAAGAAATACAACAGCAAG 58.574 34.615 0.00 0.00 0.00 4.01
309 310 7.284489 AGACCTTACAAAGAAATACAACAGCAA 59.716 33.333 0.00 0.00 0.00 3.91
310 311 6.770785 AGACCTTACAAAGAAATACAACAGCA 59.229 34.615 0.00 0.00 0.00 4.41
311 312 7.203255 AGACCTTACAAAGAAATACAACAGC 57.797 36.000 0.00 0.00 0.00 4.40
312 313 8.621286 ACAAGACCTTACAAAGAAATACAACAG 58.379 33.333 0.00 0.00 0.00 3.16
313 314 8.402472 CACAAGACCTTACAAAGAAATACAACA 58.598 33.333 0.00 0.00 0.00 3.33
314 315 8.617809 TCACAAGACCTTACAAAGAAATACAAC 58.382 33.333 0.00 0.00 0.00 3.32
315 316 8.740123 TCACAAGACCTTACAAAGAAATACAA 57.260 30.769 0.00 0.00 0.00 2.41
316 317 8.208224 TCTCACAAGACCTTACAAAGAAATACA 58.792 33.333 0.00 0.00 0.00 2.29
317 318 8.603242 TCTCACAAGACCTTACAAAGAAATAC 57.397 34.615 0.00 0.00 0.00 1.89
318 319 9.793259 ATTCTCACAAGACCTTACAAAGAAATA 57.207 29.630 0.00 0.00 0.00 1.40
319 320 8.697507 ATTCTCACAAGACCTTACAAAGAAAT 57.302 30.769 0.00 0.00 0.00 2.17
320 321 9.621629 TTATTCTCACAAGACCTTACAAAGAAA 57.378 29.630 0.00 0.00 0.00 2.52
321 322 9.793259 ATTATTCTCACAAGACCTTACAAAGAA 57.207 29.630 0.00 0.00 0.00 2.52
322 323 9.793259 AATTATTCTCACAAGACCTTACAAAGA 57.207 29.630 0.00 0.00 0.00 2.52
336 337 9.461312 ACAGCCACTTTATTAATTATTCTCACA 57.539 29.630 0.00 0.00 0.00 3.58
344 345 8.503196 CGATGCATACAGCCACTTTATTAATTA 58.497 33.333 0.00 0.00 44.83 1.40
345 346 7.362662 CGATGCATACAGCCACTTTATTAATT 58.637 34.615 0.00 0.00 44.83 1.40
346 347 6.568462 GCGATGCATACAGCCACTTTATTAAT 60.568 38.462 0.00 0.00 44.83 1.40
347 348 5.277779 GCGATGCATACAGCCACTTTATTAA 60.278 40.000 0.00 0.00 44.83 1.40
348 349 4.213270 GCGATGCATACAGCCACTTTATTA 59.787 41.667 0.00 0.00 44.83 0.98
349 350 3.003689 GCGATGCATACAGCCACTTTATT 59.996 43.478 0.00 0.00 44.83 1.40
350 351 2.549754 GCGATGCATACAGCCACTTTAT 59.450 45.455 0.00 0.00 44.83 1.40
351 352 1.939934 GCGATGCATACAGCCACTTTA 59.060 47.619 0.00 0.00 44.83 1.85
352 353 0.734889 GCGATGCATACAGCCACTTT 59.265 50.000 0.00 0.00 44.83 2.66
353 354 0.107508 AGCGATGCATACAGCCACTT 60.108 50.000 15.04 0.00 44.83 3.16
354 355 0.531532 GAGCGATGCATACAGCCACT 60.532 55.000 15.04 0.00 44.83 4.00
355 356 0.811219 TGAGCGATGCATACAGCCAC 60.811 55.000 15.04 11.23 44.83 5.01
356 357 0.531311 CTGAGCGATGCATACAGCCA 60.531 55.000 15.04 12.17 44.83 4.75
357 358 0.249615 TCTGAGCGATGCATACAGCC 60.250 55.000 15.04 9.13 44.83 4.85
358 359 1.459975 CATCTGAGCGATGCATACAGC 59.540 52.381 0.00 6.15 42.75 4.40
367 368 1.069427 GCCTCTGCATCTGAGCGAT 59.931 57.895 0.00 0.00 37.31 4.58
368 369 2.498248 GCCTCTGCATCTGAGCGA 59.502 61.111 0.00 0.00 37.31 4.93
369 370 2.588314 GGCCTCTGCATCTGAGCG 60.588 66.667 0.00 0.00 40.13 5.03
370 371 1.524165 CTGGCCTCTGCATCTGAGC 60.524 63.158 3.32 0.00 40.13 4.26
371 372 1.146485 CCTGGCCTCTGCATCTGAG 59.854 63.158 3.32 0.00 40.13 3.35
372 373 2.372890 CCCTGGCCTCTGCATCTGA 61.373 63.158 3.32 0.00 40.13 3.27
373 374 2.192443 CCCTGGCCTCTGCATCTG 59.808 66.667 3.32 0.00 40.13 2.90
374 375 3.095163 CCCCTGGCCTCTGCATCT 61.095 66.667 3.32 0.00 40.13 2.90
375 376 3.412624 GACCCCTGGCCTCTGCATC 62.413 68.421 3.32 0.00 40.13 3.91
376 377 3.415087 GACCCCTGGCCTCTGCAT 61.415 66.667 3.32 0.00 40.13 3.96
377 378 4.980592 TGACCCCTGGCCTCTGCA 62.981 66.667 3.32 0.00 40.13 4.41
378 379 3.412624 GATGACCCCTGGCCTCTGC 62.413 68.421 3.32 0.00 0.00 4.26
379 380 2.750657 GGATGACCCCTGGCCTCTG 61.751 68.421 3.32 0.00 0.00 3.35
380 381 2.367512 GGATGACCCCTGGCCTCT 60.368 66.667 3.32 0.00 0.00 3.69
381 382 2.367512 AGGATGACCCCTGGCCTC 60.368 66.667 3.32 0.00 34.68 4.70
382 383 2.367512 GAGGATGACCCCTGGCCT 60.368 66.667 3.32 0.00 36.49 5.19
383 384 3.493303 GGAGGATGACCCCTGGCC 61.493 72.222 0.00 0.00 36.49 5.36
384 385 1.575447 AAAGGAGGATGACCCCTGGC 61.575 60.000 0.00 0.00 37.09 4.85
385 386 1.002857 AAAAGGAGGATGACCCCTGG 58.997 55.000 0.00 0.00 37.09 4.45
386 387 1.918957 AGAAAAGGAGGATGACCCCTG 59.081 52.381 0.00 0.00 37.09 4.45
387 388 2.367947 AGAAAAGGAGGATGACCCCT 57.632 50.000 0.00 0.00 38.08 4.79
388 389 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
413 414 9.384764 GGCTCAAAATCAATACTCTACTACTTT 57.615 33.333 0.00 0.00 0.00 2.66
414 415 7.707035 CGGCTCAAAATCAATACTCTACTACTT 59.293 37.037 0.00 0.00 0.00 2.24
415 416 7.203910 CGGCTCAAAATCAATACTCTACTACT 58.796 38.462 0.00 0.00 0.00 2.57
416 417 6.421202 CCGGCTCAAAATCAATACTCTACTAC 59.579 42.308 0.00 0.00 0.00 2.73
417 418 6.322969 TCCGGCTCAAAATCAATACTCTACTA 59.677 38.462 0.00 0.00 0.00 1.82
418 419 5.128827 TCCGGCTCAAAATCAATACTCTACT 59.871 40.000 0.00 0.00 0.00 2.57
419 420 5.357257 TCCGGCTCAAAATCAATACTCTAC 58.643 41.667 0.00 0.00 0.00 2.59
420 421 5.607939 TCCGGCTCAAAATCAATACTCTA 57.392 39.130 0.00 0.00 0.00 2.43
421 422 4.487714 TCCGGCTCAAAATCAATACTCT 57.512 40.909 0.00 0.00 0.00 3.24
422 423 5.757850 ATTCCGGCTCAAAATCAATACTC 57.242 39.130 0.00 0.00 0.00 2.59
448 449 4.479619 GCCTTCTTGTCATAAAACAGCTG 58.520 43.478 13.48 13.48 0.00 4.24
581 604 2.766229 GACCAGAGGGGAGAGGGC 60.766 72.222 0.00 0.00 41.15 5.19
590 613 1.142870 TGTGAAAACTGGGACCAGAGG 59.857 52.381 24.31 0.00 46.30 3.69
601 624 2.174639 TGGAGGTGGACATGTGAAAACT 59.825 45.455 1.15 0.00 0.00 2.66
623 646 3.004839 TCAAATCGAGATGAGGATCGGAC 59.995 47.826 0.00 0.00 38.61 4.79
624 647 3.222603 TCAAATCGAGATGAGGATCGGA 58.777 45.455 0.00 0.00 38.61 4.55
731 864 4.750833 TTATCAAAGGGAAGGGGAACAA 57.249 40.909 0.00 0.00 0.00 2.83
796 929 2.095461 GAAACCTTCCCCAGATTCAGC 58.905 52.381 0.00 0.00 0.00 4.26
855 988 8.550585 GGGAGGCTCTCTACTTCTACTTATATA 58.449 40.741 15.23 0.00 0.00 0.86
876 1014 2.674563 TTTGTGTGAGCCGTGGGAGG 62.675 60.000 0.00 0.00 0.00 4.30
878 1016 1.227823 CTTTGTGTGAGCCGTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
879 1017 1.101049 AACTTTGTGTGAGCCGTGGG 61.101 55.000 0.00 0.00 0.00 4.61
907 1054 4.463879 CCAGCAGGCGAGTGAGGG 62.464 72.222 0.00 0.00 0.00 4.30
954 1101 1.423921 GGAAGGAGGTTTTGAGTGGGA 59.576 52.381 0.00 0.00 0.00 4.37
962 1109 5.648330 ACTAAACAGAGGAAGGAGGTTTT 57.352 39.130 0.00 0.00 34.00 2.43
1054 1206 1.066303 GAGGATCAGCACGTACCTCTG 59.934 57.143 0.00 0.00 42.41 3.35
1091 1243 4.825422 TCAGGCACAAGAAACTATCTGAG 58.175 43.478 0.00 0.00 38.79 3.35
1218 1381 4.387026 TGAATCTGGTTCTTGGATTGGT 57.613 40.909 1.90 0.00 37.72 3.67
1269 1438 0.732538 GCGAAAACAAATCGGCAGGG 60.733 55.000 0.00 0.00 40.54 4.45
1270 1439 0.039617 TGCGAAAACAAATCGGCAGG 60.040 50.000 0.00 0.00 40.54 4.85
1271 1440 1.052287 GTGCGAAAACAAATCGGCAG 58.948 50.000 0.00 0.00 40.54 4.85
1272 1441 0.382158 TGTGCGAAAACAAATCGGCA 59.618 45.000 0.00 0.00 40.54 5.69
1273 1442 1.386412 CATGTGCGAAAACAAATCGGC 59.614 47.619 0.00 0.00 40.54 5.54
1274 1443 2.660490 ACATGTGCGAAAACAAATCGG 58.340 42.857 0.00 0.00 40.54 4.18
1287 1456 1.529010 GGTTGCGATCGTAACATGTGC 60.529 52.381 37.68 22.88 41.41 4.57
1288 1457 1.999735 AGGTTGCGATCGTAACATGTG 59.000 47.619 37.68 3.00 41.41 3.21
1289 1458 2.094182 AGAGGTTGCGATCGTAACATGT 60.094 45.455 37.68 31.02 41.41 3.21
1311 1481 7.755591 TGCAAGCTAAGATTAGAGAAACAATG 58.244 34.615 3.77 0.00 32.47 2.82
1338 1508 2.433239 GGAAATCAATCCTTGCATGGCT 59.567 45.455 13.75 1.01 36.50 4.75
1349 1519 4.990426 CCAACACAAACCAGGAAATCAATC 59.010 41.667 0.00 0.00 0.00 2.67
1371 1541 2.044123 AGAGATTCATTCCAACGGCC 57.956 50.000 0.00 0.00 0.00 6.13
1374 1544 6.183359 CGATCGATAAGAGATTCATTCCAACG 60.183 42.308 10.26 0.00 0.00 4.10
1406 1579 6.324770 AGGAAACAAACAATCTTGTGAGGAAT 59.675 34.615 0.00 0.00 41.31 3.01
1407 1580 5.656416 AGGAAACAAACAATCTTGTGAGGAA 59.344 36.000 0.00 0.00 41.31 3.36
1408 1581 5.067674 CAGGAAACAAACAATCTTGTGAGGA 59.932 40.000 0.00 0.00 41.31 3.71
1409 1582 5.067674 TCAGGAAACAAACAATCTTGTGAGG 59.932 40.000 0.00 0.00 41.31 3.86
1410 1583 6.135290 TCAGGAAACAAACAATCTTGTGAG 57.865 37.500 0.00 0.00 41.31 3.51
1411 1584 6.320926 TCATCAGGAAACAAACAATCTTGTGA 59.679 34.615 0.00 0.00 41.31 3.58
1412 1585 6.418819 GTCATCAGGAAACAAACAATCTTGTG 59.581 38.462 0.00 0.00 41.31 3.33
1730 1903 4.057428 GAGTGGAGCACGGCGAGT 62.057 66.667 16.62 0.00 39.64 4.18
1842 2015 1.304052 TGGATTTGGCGGGGACAAG 60.304 57.895 0.00 0.00 29.74 3.16
1958 2131 1.511305 GTCGCCGATGGTCTTCTCA 59.489 57.895 0.00 0.00 0.00 3.27
2627 2800 0.242825 CGACGACTTTGTAGAGCCCA 59.757 55.000 0.00 0.00 0.00 5.36
2702 2875 3.316573 AAGTAGGGGTCTGCGCTGC 62.317 63.158 9.73 4.51 0.00 5.25
2786 2959 2.862140 GCGCCTGCAATGTACAGTTTTT 60.862 45.455 0.33 0.00 42.15 1.94
2787 2960 1.335872 GCGCCTGCAATGTACAGTTTT 60.336 47.619 0.33 0.00 42.15 2.43
2788 2961 0.240945 GCGCCTGCAATGTACAGTTT 59.759 50.000 0.33 0.00 42.15 2.66
2789 2962 1.875963 GCGCCTGCAATGTACAGTT 59.124 52.632 0.33 0.00 42.15 3.16
2790 2963 3.578456 GCGCCTGCAATGTACAGT 58.422 55.556 0.33 0.00 42.15 3.55
3094 3267 2.442272 CAGTCGTCTCCCGGGGAT 60.442 66.667 23.50 0.00 37.11 3.85
3103 3276 2.282251 TCCACGCTCCAGTCGTCT 60.282 61.111 0.00 0.00 38.19 4.18
3295 3468 2.437359 CTTCTTCCCAGCGGCCAG 60.437 66.667 2.24 0.00 0.00 4.85
3343 3516 2.437359 GGCTGGCTGCTAGTGGTG 60.437 66.667 14.66 0.00 42.39 4.17
3428 3605 5.739161 CGAAGAGAGAAACAAAACAACCTTG 59.261 40.000 0.00 0.00 0.00 3.61
3452 3629 1.857217 CATGATCACTCGCAGCTACAC 59.143 52.381 0.00 0.00 0.00 2.90
3540 3717 3.059325 GCAGCGACAGTTGATATGGATTC 60.059 47.826 0.00 0.00 0.00 2.52
3541 3718 2.874701 GCAGCGACAGTTGATATGGATT 59.125 45.455 0.00 0.00 0.00 3.01
3542 3719 2.103771 AGCAGCGACAGTTGATATGGAT 59.896 45.455 0.00 0.00 0.00 3.41
3543 3720 1.482182 AGCAGCGACAGTTGATATGGA 59.518 47.619 0.00 0.00 0.00 3.41
3544 3721 1.945387 AGCAGCGACAGTTGATATGG 58.055 50.000 0.00 0.00 0.00 2.74
3545 3722 4.551603 GCTAAAGCAGCGACAGTTGATATG 60.552 45.833 0.00 0.00 41.37 1.78
3546 3723 3.557595 GCTAAAGCAGCGACAGTTGATAT 59.442 43.478 0.00 0.00 41.37 1.63
3548 3725 1.734465 GCTAAAGCAGCGACAGTTGAT 59.266 47.619 0.00 0.00 41.37 2.57
3550 3727 3.664930 GCTAAAGCAGCGACAGTTG 57.335 52.632 0.00 0.00 41.37 3.16
3585 3762 5.050490 CACTCGATCGGGTTGATAATTCTT 58.950 41.667 20.23 0.00 37.47 2.52
3612 3789 1.268999 TGACCATGTTTTGTCAAGCGC 60.269 47.619 0.00 0.00 38.48 5.92
3674 3852 3.117888 GGTGATGGATGGCCTCTTTCTTA 60.118 47.826 3.32 0.00 34.31 2.10
3710 3888 4.641396 TGGCAATCATAGGATACGGAAAG 58.359 43.478 0.00 0.00 46.39 2.62
3773 3951 0.823460 CTCCCTCTCTCTGTCCTTGC 59.177 60.000 0.00 0.00 0.00 4.01
3789 3967 3.134442 ACCATGCTCATTTCTCTCTCTCC 59.866 47.826 0.00 0.00 0.00 3.71
3800 3978 4.159135 GTGGAATTTCTCACCATGCTCATT 59.841 41.667 0.00 0.00 36.09 2.57
3849 4028 7.442062 CAGGTTGAAAGGCAAGAAAATTATTGT 59.558 33.333 2.86 0.00 37.12 2.71
3850 4029 7.656948 TCAGGTTGAAAGGCAAGAAAATTATTG 59.343 33.333 0.00 0.00 37.12 1.90
3997 4499 2.180131 GAGCTGTTGTTGCTGGCTCG 62.180 60.000 0.00 0.00 41.30 5.03
4007 4509 1.975407 GGCCATGCTGAGCTGTTGT 60.975 57.895 5.83 0.00 0.00 3.32
4046 4548 5.245751 AGAAGCTGAAGATCGACCATCATAT 59.754 40.000 0.00 0.00 33.29 1.78
4179 4681 2.185867 GGTAGATGTTGCGCCGGA 59.814 61.111 5.05 0.00 0.00 5.14
4211 4713 1.792367 TGAGACACGTCGCAAAAGATG 59.208 47.619 0.82 0.00 36.49 2.90
4291 4793 9.658799 TTTCTCCACTAAGTAATCAGAATTGAG 57.341 33.333 0.00 0.00 36.61 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.