Multiple sequence alignment - TraesCS6B01G237700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G237700 chr6B 100.000 2286 0 0 612 2897 413283688 413285973 0.000000e+00 4222
1 TraesCS6B01G237700 chr6B 100.000 321 0 0 1 321 413283077 413283397 6.910000e-166 593
2 TraesCS6B01G237700 chr6B 96.429 168 6 0 2727 2894 352239897 352240064 7.910000e-71 278
3 TraesCS6B01G237700 chr6B 95.349 172 8 0 2726 2897 341511565 341511394 1.020000e-69 274
4 TraesCS6B01G237700 chr6D 95.521 1987 70 11 612 2587 265880429 265882407 0.000000e+00 3158
5 TraesCS6B01G237700 chr6D 89.506 324 28 4 1 321 265879028 265879348 3.480000e-109 405
6 TraesCS6B01G237700 chr6D 94.262 122 7 0 2572 2693 265883524 265883645 1.370000e-43 187
7 TraesCS6B01G237700 chr6A 93.409 2109 75 21 612 2693 376479326 376481397 0.000000e+00 3066
8 TraesCS6B01G237700 chr6A 88.424 311 30 6 13 321 376475742 376476048 1.270000e-98 370
9 TraesCS6B01G237700 chr2B 97.006 167 5 0 2728 2894 41207884 41208050 6.110000e-72 281
10 TraesCS6B01G237700 chr4B 95.906 171 7 0 2724 2894 482112267 482112437 7.910000e-71 278
11 TraesCS6B01G237700 chr4A 95.906 171 7 0 2727 2897 14748539 14748369 7.910000e-71 278
12 TraesCS6B01G237700 chr2A 95.906 171 7 0 2727 2897 756960387 756960217 7.910000e-71 278
13 TraesCS6B01G237700 chr2A 94.886 176 9 0 2722 2897 690804516 690804341 2.840000e-70 276
14 TraesCS6B01G237700 chr7A 95.882 170 7 0 2728 2897 285423222 285423053 2.840000e-70 276
15 TraesCS6B01G237700 chr1B 95.322 171 8 0 2727 2897 101139983 101139813 3.680000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G237700 chr6B 413283077 413285973 2896 False 2407.5 4222 100.000000 1 2897 2 chr6B.!!$F2 2896
1 TraesCS6B01G237700 chr6D 265879028 265883645 4617 False 1250.0 3158 93.096333 1 2693 3 chr6D.!!$F1 2692
2 TraesCS6B01G237700 chr6A 376475742 376481397 5655 False 1718.0 3066 90.916500 13 2693 2 chr6A.!!$F1 2680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 4353 1.480954 ACCGCCCCATCTATATAAGCG 59.519 52.381 0.0 0.0 41.62 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2771 7351 0.108377 TATTCGTGACGCTGCCATGT 60.108 50.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.998106 ATGTCATATTCCCAAGTACTTGTATAC 57.002 33.333 29.05 18.18 38.85 1.47
61 62 4.659088 ACTTGTATACGAGACATGACGTG 58.341 43.478 24.31 7.58 42.61 4.49
106 107 9.399403 GTGACTATGATCTTTTTCTTTTTCCAC 57.601 33.333 0.00 0.00 0.00 4.02
139 140 5.401550 TCATGATGTTTGAAAATCGCTTCC 58.598 37.500 0.00 0.00 0.00 3.46
145 146 5.355596 TGTTTGAAAATCGCTTCCATGTTT 58.644 33.333 0.00 0.00 0.00 2.83
149 150 9.301153 GTTTGAAAATCGCTTCCATGTTTATAT 57.699 29.630 0.00 0.00 0.00 0.86
153 154 7.807977 AAATCGCTTCCATGTTTATATGAGT 57.192 32.000 0.00 0.00 0.00 3.41
169 170 9.638239 TTTATATGAGTGGCAAAAAGCTAAAAG 57.362 29.630 0.00 0.00 44.79 2.27
213 216 7.853524 TCTAGCGAAAACTCAAAATCGTTTTA 58.146 30.769 0.00 0.00 41.77 1.52
284 287 9.162764 GGTATATCACAACTTAAGCTGAAGAAA 57.837 33.333 18.30 0.00 0.00 2.52
292 295 5.445964 ACTTAAGCTGAAGAAAAGGAACCA 58.554 37.500 18.30 0.00 0.00 3.67
293 296 5.532779 ACTTAAGCTGAAGAAAAGGAACCAG 59.467 40.000 18.30 0.00 0.00 4.00
315 318 8.383175 ACCAGAAAGAATTGGTTATCTTCACTA 58.617 33.333 0.00 0.00 45.16 2.74
642 4064 4.981674 ACAAGTGTGCGACAATTAATTTGG 59.018 37.500 0.00 0.00 33.79 3.28
643 4065 4.173036 AGTGTGCGACAATTAATTTGGG 57.827 40.909 0.00 0.00 39.80 4.12
650 4072 4.082463 GCGACAATTAATTTGGGTTGGAGA 60.082 41.667 0.00 0.00 39.80 3.71
835 4263 4.894784 AGTCAATATCAAGTGGTTCGTGT 58.105 39.130 0.00 0.00 0.00 4.49
836 4264 4.690748 AGTCAATATCAAGTGGTTCGTGTG 59.309 41.667 0.00 0.00 0.00 3.82
898 4326 7.037586 CCATGGTTATATTAGCCCTTCCTTCTA 60.038 40.741 2.57 0.00 0.00 2.10
906 4334 2.024306 GCCCTTCCTTCTATTGCCCAC 61.024 57.143 0.00 0.00 0.00 4.61
925 4353 1.480954 ACCGCCCCATCTATATAAGCG 59.519 52.381 0.00 0.00 41.62 4.68
977 4412 1.614996 CCAACACACCCAAGCACATA 58.385 50.000 0.00 0.00 0.00 2.29
1071 4506 1.795170 GCAAGCGTTCTTCCTTGGCA 61.795 55.000 0.00 0.00 39.01 4.92
1392 4827 2.447379 ATGAGCTCCTCCCCGCAT 60.447 61.111 12.15 0.00 0.00 4.73
1416 4851 2.418910 CGTCCTCCTCCATCACGCT 61.419 63.158 0.00 0.00 0.00 5.07
1470 4905 4.884257 CCCATACCGACGCCACCG 62.884 72.222 0.00 0.00 41.14 4.94
1842 5280 1.751927 CGTAGTCCAGTACCCGCCT 60.752 63.158 0.00 0.00 0.00 5.52
1903 5341 2.887568 GCAGGGCGTGATGTCGAG 60.888 66.667 12.03 0.00 0.00 4.04
1904 5342 2.573869 CAGGGCGTGATGTCGAGT 59.426 61.111 0.00 0.00 0.00 4.18
1905 5343 1.807226 CAGGGCGTGATGTCGAGTA 59.193 57.895 0.00 0.00 0.00 2.59
1908 5346 1.019673 GGGCGTGATGTCGAGTAGTA 58.980 55.000 0.00 0.00 0.00 1.82
1946 5384 3.365265 GAGGCGGGCTTGTTGTGG 61.365 66.667 5.24 0.00 0.00 4.17
2002 5440 1.839424 AAGATTTGCTTAGCCGCCTT 58.161 45.000 0.29 0.00 34.31 4.35
2003 5441 1.383523 AGATTTGCTTAGCCGCCTTC 58.616 50.000 0.29 0.00 0.00 3.46
2015 5453 6.704289 TTAGCCGCCTTCATATATATACGT 57.296 37.500 0.00 0.00 0.00 3.57
2112 5550 7.307573 GCAAATGCATGGAAATTAAGCTTATCC 60.308 37.037 15.07 15.07 41.59 2.59
2119 5557 9.688592 CATGGAAATTAAGCTTATCCAATCTTC 57.311 33.333 24.29 14.19 42.97 2.87
2130 5568 6.772716 GCTTATCCAATCTTCTGGTCCATTTA 59.227 38.462 0.00 0.00 37.74 1.40
2137 5575 7.253422 CAATCTTCTGGTCCATTTATTGTGTC 58.747 38.462 0.00 0.00 0.00 3.67
2174 5614 7.312154 TGTTGATTTGGTGAAATTCCTTATCG 58.688 34.615 0.00 0.00 31.58 2.92
2226 5666 2.970324 GTGACGGTGCCTCGCAAA 60.970 61.111 0.00 0.00 41.47 3.68
2251 5691 6.163135 ACTCGGGGAGTAGATTAAGATTTG 57.837 41.667 0.00 0.00 41.51 2.32
2254 5694 4.704965 GGGGAGTAGATTAAGATTTGCGT 58.295 43.478 0.00 0.00 0.00 5.24
2594 7174 2.193087 ATACTTTGCCGCTCGGGGTT 62.193 55.000 10.57 0.00 35.78 4.11
2647 7227 1.142748 CGCTCTGGCTTCTCGGATT 59.857 57.895 0.00 0.00 36.09 3.01
2676 7256 1.749334 ATCTCTCGGTCCGCAATCCC 61.749 60.000 6.34 0.00 0.00 3.85
2699 7279 3.249999 GGCACGCGTTAGAGCAAA 58.750 55.556 19.18 0.00 36.85 3.68
2700 7280 1.154469 GGCACGCGTTAGAGCAAAC 60.154 57.895 19.18 0.68 36.85 2.93
2701 7281 1.154469 GCACGCGTTAGAGCAAACC 60.154 57.895 10.22 0.00 36.85 3.27
2702 7282 1.129809 CACGCGTTAGAGCAAACCG 59.870 57.895 10.22 0.00 36.85 4.44
2703 7283 1.007038 ACGCGTTAGAGCAAACCGA 60.007 52.632 5.58 0.00 36.85 4.69
2704 7284 1.280206 ACGCGTTAGAGCAAACCGAC 61.280 55.000 5.58 0.00 36.85 4.79
2705 7285 1.414897 GCGTTAGAGCAAACCGACG 59.585 57.895 0.00 0.00 37.05 5.12
2706 7286 1.952266 GCGTTAGAGCAAACCGACGG 61.952 60.000 13.61 13.61 37.05 4.79
2707 7287 1.785951 GTTAGAGCAAACCGACGGC 59.214 57.895 15.39 0.00 0.00 5.68
2708 7288 0.947180 GTTAGAGCAAACCGACGGCA 60.947 55.000 15.39 0.00 0.00 5.69
2709 7289 0.036765 TTAGAGCAAACCGACGGCAT 60.037 50.000 15.39 0.00 0.00 4.40
2710 7290 0.739462 TAGAGCAAACCGACGGCATG 60.739 55.000 15.39 14.32 0.00 4.06
2711 7291 3.667429 GAGCAAACCGACGGCATGC 62.667 63.158 27.89 27.89 37.70 4.06
2712 7292 4.776647 GCAAACCGACGGCATGCC 62.777 66.667 27.67 27.67 33.36 4.40
2786 7366 3.792047 CCACATGGCAGCGTCACG 61.792 66.667 0.00 0.00 0.00 4.35
2787 7367 2.738139 CACATGGCAGCGTCACGA 60.738 61.111 0.00 0.00 0.00 4.35
2788 7368 2.030412 ACATGGCAGCGTCACGAA 59.970 55.556 0.00 0.00 0.00 3.85
2789 7369 1.375908 ACATGGCAGCGTCACGAAT 60.376 52.632 0.00 0.00 0.00 3.34
2790 7370 0.108377 ACATGGCAGCGTCACGAATA 60.108 50.000 0.00 0.00 0.00 1.75
2791 7371 1.220529 CATGGCAGCGTCACGAATAT 58.779 50.000 0.00 0.00 0.00 1.28
2792 7372 1.599071 CATGGCAGCGTCACGAATATT 59.401 47.619 0.00 0.00 0.00 1.28
2793 7373 1.286501 TGGCAGCGTCACGAATATTC 58.713 50.000 0.00 5.30 0.00 1.75
2794 7374 1.286501 GGCAGCGTCACGAATATTCA 58.713 50.000 15.57 0.00 0.00 2.57
2795 7375 1.663643 GGCAGCGTCACGAATATTCAA 59.336 47.619 15.57 0.00 0.00 2.69
2796 7376 2.285834 GGCAGCGTCACGAATATTCAAG 60.286 50.000 15.57 6.98 0.00 3.02
2797 7377 2.285834 GCAGCGTCACGAATATTCAAGG 60.286 50.000 15.57 6.96 0.00 3.61
2798 7378 2.930040 CAGCGTCACGAATATTCAAGGT 59.070 45.455 15.57 2.73 0.00 3.50
2799 7379 3.370978 CAGCGTCACGAATATTCAAGGTT 59.629 43.478 15.57 1.93 0.00 3.50
2800 7380 3.617263 AGCGTCACGAATATTCAAGGTTC 59.383 43.478 15.57 0.83 0.00 3.62
2801 7381 3.369756 GCGTCACGAATATTCAAGGTTCA 59.630 43.478 15.57 0.00 0.00 3.18
2802 7382 4.724036 GCGTCACGAATATTCAAGGTTCAC 60.724 45.833 15.57 4.24 0.00 3.18
2803 7383 4.387559 CGTCACGAATATTCAAGGTTCACA 59.612 41.667 15.57 0.00 0.00 3.58
2804 7384 5.618561 GTCACGAATATTCAAGGTTCACAC 58.381 41.667 15.57 0.00 0.00 3.82
2805 7385 5.178623 GTCACGAATATTCAAGGTTCACACA 59.821 40.000 15.57 0.00 0.00 3.72
2806 7386 5.760743 TCACGAATATTCAAGGTTCACACAA 59.239 36.000 15.57 0.00 0.00 3.33
2807 7387 6.429692 TCACGAATATTCAAGGTTCACACAAT 59.570 34.615 15.57 0.00 0.00 2.71
2808 7388 6.742718 CACGAATATTCAAGGTTCACACAATC 59.257 38.462 15.57 0.00 0.00 2.67
2809 7389 6.655003 ACGAATATTCAAGGTTCACACAATCT 59.345 34.615 15.57 0.00 0.00 2.40
2810 7390 7.148407 ACGAATATTCAAGGTTCACACAATCTC 60.148 37.037 15.57 0.00 0.00 2.75
2811 7391 7.148423 CGAATATTCAAGGTTCACACAATCTCA 60.148 37.037 15.57 0.00 0.00 3.27
2812 7392 5.954296 ATTCAAGGTTCACACAATCTCAG 57.046 39.130 0.00 0.00 0.00 3.35
2813 7393 4.687901 TCAAGGTTCACACAATCTCAGA 57.312 40.909 0.00 0.00 0.00 3.27
2814 7394 5.034852 TCAAGGTTCACACAATCTCAGAA 57.965 39.130 0.00 0.00 0.00 3.02
2815 7395 5.436175 TCAAGGTTCACACAATCTCAGAAA 58.564 37.500 0.00 0.00 0.00 2.52
2816 7396 5.296780 TCAAGGTTCACACAATCTCAGAAAC 59.703 40.000 0.00 0.00 0.00 2.78
2817 7397 4.780815 AGGTTCACACAATCTCAGAAACA 58.219 39.130 0.00 0.00 0.00 2.83
2818 7398 4.576463 AGGTTCACACAATCTCAGAAACAC 59.424 41.667 0.00 0.00 0.00 3.32
2819 7399 4.335315 GGTTCACACAATCTCAGAAACACA 59.665 41.667 0.00 0.00 0.00 3.72
2820 7400 5.163663 GGTTCACACAATCTCAGAAACACAA 60.164 40.000 0.00 0.00 0.00 3.33
2821 7401 6.321717 GTTCACACAATCTCAGAAACACAAA 58.678 36.000 0.00 0.00 0.00 2.83
2822 7402 6.122850 TCACACAATCTCAGAAACACAAAG 57.877 37.500 0.00 0.00 0.00 2.77
2823 7403 5.879777 TCACACAATCTCAGAAACACAAAGA 59.120 36.000 0.00 0.00 0.00 2.52
2824 7404 6.037500 TCACACAATCTCAGAAACACAAAGAG 59.962 38.462 0.00 0.00 0.00 2.85
2825 7405 6.037500 CACACAATCTCAGAAACACAAAGAGA 59.962 38.462 0.00 0.00 39.41 3.10
2826 7406 6.599244 ACACAATCTCAGAAACACAAAGAGAA 59.401 34.615 0.00 0.00 38.66 2.87
2827 7407 7.130917 CACAATCTCAGAAACACAAAGAGAAG 58.869 38.462 0.00 0.00 38.66 2.85
2828 7408 6.825721 ACAATCTCAGAAACACAAAGAGAAGT 59.174 34.615 0.00 0.00 38.66 3.01
2829 7409 7.337942 ACAATCTCAGAAACACAAAGAGAAGTT 59.662 33.333 0.00 0.00 38.66 2.66
2830 7410 8.830580 CAATCTCAGAAACACAAAGAGAAGTTA 58.169 33.333 0.00 0.00 38.66 2.24
2831 7411 8.964476 ATCTCAGAAACACAAAGAGAAGTTAA 57.036 30.769 0.00 0.00 38.66 2.01
2832 7412 8.786826 TCTCAGAAACACAAAGAGAAGTTAAA 57.213 30.769 0.00 0.00 32.83 1.52
2833 7413 9.396022 TCTCAGAAACACAAAGAGAAGTTAAAT 57.604 29.630 0.00 0.00 32.83 1.40
2836 7416 9.884465 CAGAAACACAAAGAGAAGTTAAATAGG 57.116 33.333 0.00 0.00 0.00 2.57
2837 7417 8.568794 AGAAACACAAAGAGAAGTTAAATAGGC 58.431 33.333 0.00 0.00 0.00 3.93
2838 7418 8.465273 AAACACAAAGAGAAGTTAAATAGGCT 57.535 30.769 0.00 0.00 0.00 4.58
2839 7419 7.674471 ACACAAAGAGAAGTTAAATAGGCTC 57.326 36.000 0.00 0.00 0.00 4.70
2840 7420 7.224297 ACACAAAGAGAAGTTAAATAGGCTCA 58.776 34.615 0.00 0.00 0.00 4.26
2841 7421 7.719633 ACACAAAGAGAAGTTAAATAGGCTCAA 59.280 33.333 0.00 0.00 0.00 3.02
2842 7422 8.567948 CACAAAGAGAAGTTAAATAGGCTCAAA 58.432 33.333 0.00 0.00 0.00 2.69
2843 7423 8.787852 ACAAAGAGAAGTTAAATAGGCTCAAAG 58.212 33.333 0.00 0.00 0.00 2.77
2844 7424 8.787852 CAAAGAGAAGTTAAATAGGCTCAAAGT 58.212 33.333 0.00 0.00 0.00 2.66
2846 7426 9.438228 AAGAGAAGTTAAATAGGCTCAAAGTAC 57.562 33.333 0.00 0.00 0.00 2.73
2847 7427 8.817876 AGAGAAGTTAAATAGGCTCAAAGTACT 58.182 33.333 0.00 0.00 0.00 2.73
2851 7431 8.699283 AGTTAAATAGGCTCAAAGTACTAACG 57.301 34.615 0.00 0.00 0.00 3.18
2852 7432 8.526147 AGTTAAATAGGCTCAAAGTACTAACGA 58.474 33.333 0.00 0.00 0.00 3.85
2853 7433 9.143631 GTTAAATAGGCTCAAAGTACTAACGAA 57.856 33.333 0.00 0.00 0.00 3.85
2854 7434 9.709495 TTAAATAGGCTCAAAGTACTAACGAAA 57.291 29.630 0.00 0.00 0.00 3.46
2855 7435 7.592439 AATAGGCTCAAAGTACTAACGAAAC 57.408 36.000 0.00 0.00 0.00 2.78
2856 7436 4.952460 AGGCTCAAAGTACTAACGAAACA 58.048 39.130 0.00 0.00 0.00 2.83
2857 7437 4.989168 AGGCTCAAAGTACTAACGAAACAG 59.011 41.667 0.00 0.00 0.00 3.16
2858 7438 4.151867 GGCTCAAAGTACTAACGAAACAGG 59.848 45.833 0.00 0.00 0.00 4.00
2859 7439 4.377124 GCTCAAAGTACTAACGAAACAGGC 60.377 45.833 0.00 0.00 0.00 4.85
2860 7440 4.695396 TCAAAGTACTAACGAAACAGGCA 58.305 39.130 0.00 0.00 0.00 4.75
2861 7441 4.748102 TCAAAGTACTAACGAAACAGGCAG 59.252 41.667 0.00 0.00 0.00 4.85
2862 7442 2.685100 AGTACTAACGAAACAGGCAGC 58.315 47.619 0.00 0.00 0.00 5.25
2863 7443 2.299297 AGTACTAACGAAACAGGCAGCT 59.701 45.455 0.00 0.00 0.00 4.24
2864 7444 1.512926 ACTAACGAAACAGGCAGCTG 58.487 50.000 10.11 10.11 0.00 4.24
2865 7445 0.166814 CTAACGAAACAGGCAGCTGC 59.833 55.000 30.88 30.88 41.14 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.573885 TCTCGTATACAAGTACTTGGGAATATG 58.426 37.037 33.11 27.73 44.45 1.78
33 34 6.691818 GTCATGTCTCGTATACAAGTACTTGG 59.308 42.308 33.11 18.49 44.45 3.61
85 86 7.519032 ACCGTGGAAAAAGAAAAAGATCATA 57.481 32.000 0.00 0.00 0.00 2.15
95 96 6.452494 TGAAATGTTACCGTGGAAAAAGAA 57.548 33.333 0.00 0.00 0.00 2.52
106 107 7.865875 TTTCAAACATCATGAAATGTTACCG 57.134 32.000 13.65 7.24 46.49 4.02
139 140 7.037438 AGCTTTTTGCCACTCATATAAACATG 58.963 34.615 0.00 0.00 44.23 3.21
145 146 8.574251 TCTTTTAGCTTTTTGCCACTCATATA 57.426 30.769 0.00 0.00 44.23 0.86
149 150 5.789643 ATCTTTTAGCTTTTTGCCACTCA 57.210 34.783 0.00 0.00 44.23 3.41
153 154 7.721402 TGAGTTAATCTTTTAGCTTTTTGCCA 58.279 30.769 0.00 0.00 44.23 4.92
189 190 6.969669 AAAACGATTTTGAGTTTTCGCTAG 57.030 33.333 0.00 0.00 44.32 3.42
191 192 7.136119 TGATAAAACGATTTTGAGTTTTCGCT 58.864 30.769 9.19 0.00 44.32 4.93
213 216 8.806146 GGCCTTGGATTGTAATTATGTTATGAT 58.194 33.333 0.00 0.00 0.00 2.45
224 227 6.440328 AGTTTGTAATGGCCTTGGATTGTAAT 59.560 34.615 3.32 0.00 0.00 1.89
292 295 9.442047 CACTAGTGAAGATAACCAATTCTTTCT 57.558 33.333 18.45 0.00 32.46 2.52
293 296 8.669243 CCACTAGTGAAGATAACCAATTCTTTC 58.331 37.037 24.68 0.00 32.46 2.62
611 614 3.462982 TGTCGCACACTTGTATGACTTT 58.537 40.909 12.01 0.00 34.45 2.66
612 615 3.106242 TGTCGCACACTTGTATGACTT 57.894 42.857 12.01 0.00 34.45 3.01
613 616 2.812358 TGTCGCACACTTGTATGACT 57.188 45.000 12.01 0.00 34.45 3.41
614 617 4.404507 AATTGTCGCACACTTGTATGAC 57.595 40.909 6.32 6.32 34.14 3.06
615 618 6.735678 ATTAATTGTCGCACACTTGTATGA 57.264 33.333 0.00 0.00 0.00 2.15
616 619 7.201342 CCAAATTAATTGTCGCACACTTGTATG 60.201 37.037 0.39 0.00 37.32 2.39
617 620 6.806249 CCAAATTAATTGTCGCACACTTGTAT 59.194 34.615 0.39 0.00 37.32 2.29
618 621 6.146216 CCAAATTAATTGTCGCACACTTGTA 58.854 36.000 0.39 0.00 37.32 2.41
619 622 4.981674 CCAAATTAATTGTCGCACACTTGT 59.018 37.500 0.39 0.00 37.32 3.16
642 4064 5.801531 AAAAACAAATACCCTCTCCAACC 57.198 39.130 0.00 0.00 0.00 3.77
679 4101 4.584874 TCTCGAAATGGCTATTGTTTCCA 58.415 39.130 0.00 0.00 0.00 3.53
680 4102 5.757850 ATCTCGAAATGGCTATTGTTTCC 57.242 39.130 0.00 0.00 0.00 3.13
759 4187 9.722184 TGCCATTTCTCAATCAATTGAAAAATA 57.278 25.926 13.09 0.00 42.42 1.40
835 4263 8.744652 TCTTCTTCTTTTTGACAAAATACACCA 58.255 29.630 13.90 0.00 31.28 4.17
836 4264 9.581099 TTCTTCTTCTTTTTGACAAAATACACC 57.419 29.630 13.90 0.00 31.28 4.16
872 4300 5.520748 AGGAAGGGCTAATATAACCATGG 57.479 43.478 11.19 11.19 0.00 3.66
874 4302 8.701643 ATAGAAGGAAGGGCTAATATAACCAT 57.298 34.615 0.00 0.00 0.00 3.55
898 4326 4.839706 GATGGGGCGGTGGGCAAT 62.840 66.667 0.00 0.00 46.16 3.56
906 4334 2.225068 CGCTTATATAGATGGGGCGG 57.775 55.000 0.00 0.00 37.93 6.13
1629 5067 4.182433 TGGAAGCCGTGCACCACA 62.182 61.111 12.15 0.00 33.97 4.17
1842 5280 0.321564 CTGCCACGACCTCCATGAAA 60.322 55.000 0.00 0.00 0.00 2.69
1903 5341 2.660094 CGCATTGCATCGCATGTACTAC 60.660 50.000 9.69 0.00 38.76 2.73
1904 5342 1.526464 CGCATTGCATCGCATGTACTA 59.474 47.619 9.69 0.00 38.76 1.82
1905 5343 0.305617 CGCATTGCATCGCATGTACT 59.694 50.000 9.69 0.00 38.76 2.73
1908 5346 2.409055 ACCGCATTGCATCGCATGT 61.409 52.632 9.69 2.31 38.76 3.21
1935 5373 0.320946 ATTGCATGCCACAACAAGCC 60.321 50.000 16.68 0.00 33.43 4.35
1946 5384 2.565210 TTTCACCGATGATTGCATGC 57.435 45.000 11.82 11.82 34.11 4.06
2015 5453 6.283694 GGTAGCATGATTGATTAGACACTGA 58.716 40.000 0.00 0.00 0.00 3.41
2112 5550 7.094248 TGACACAATAAATGGACCAGAAGATTG 60.094 37.037 14.85 14.85 0.00 2.67
2119 5557 7.871973 TGAAAAATGACACAATAAATGGACCAG 59.128 33.333 0.00 0.00 0.00 4.00
2130 5568 6.580788 TCAACATGGTGAAAAATGACACAAT 58.419 32.000 12.03 0.00 38.57 2.71
2174 5614 6.425721 GTCCCCAAAAATTTAGCTTTAACACC 59.574 38.462 0.00 0.00 0.00 4.16
2207 5647 4.961511 TGCGAGGCACCGTCACAC 62.962 66.667 0.00 0.00 31.71 3.82
2226 5666 6.809976 AATCTTAATCTACTCCCCGAGTTT 57.190 37.500 0.00 0.00 40.28 2.66
2251 5691 1.601162 CCATCCATTGCAAGCATACGC 60.601 52.381 4.94 0.00 38.99 4.42
2254 5694 2.737544 ACACCATCCATTGCAAGCATA 58.262 42.857 4.94 0.00 0.00 3.14
2265 5705 5.497464 TGAATCAGTAGAAACACCATCCA 57.503 39.130 0.00 0.00 0.00 3.41
2328 5774 3.254892 GCGTTCACCTTTGGAAAACAAA 58.745 40.909 0.00 0.00 46.34 2.83
2439 5887 0.452122 CCGCCGCTTTAGTTTTCACG 60.452 55.000 0.00 0.00 0.00 4.35
2499 5947 1.227147 CGTCGTGAACTGGGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
2500 5948 1.954146 CCGTCGTGAACTGGGTGTG 60.954 63.158 0.00 0.00 0.00 3.82
2501 5949 2.420043 CCGTCGTGAACTGGGTGT 59.580 61.111 0.00 0.00 0.00 4.16
2502 5950 2.357034 CCCGTCGTGAACTGGGTG 60.357 66.667 0.00 0.00 37.11 4.61
2503 5951 4.309950 GCCCGTCGTGAACTGGGT 62.310 66.667 0.00 0.00 41.21 4.51
2594 7174 4.532490 GAATCGATTCGGCACCCA 57.468 55.556 21.57 0.00 0.00 4.51
2647 7227 4.796290 GCGGACCGAGAGATTGATATTTCA 60.796 45.833 20.50 0.00 0.00 2.69
2676 7256 3.320078 CTAACGCGTGCCGATCCG 61.320 66.667 14.98 0.00 41.02 4.18
2693 7273 2.480555 CATGCCGTCGGTTTGCTC 59.519 61.111 13.94 0.00 0.00 4.26
2694 7274 3.737172 GCATGCCGTCGGTTTGCT 61.737 61.111 24.48 1.48 32.67 3.91
2695 7275 4.776647 GGCATGCCGTCGGTTTGC 62.777 66.667 23.48 24.02 33.92 3.68
2743 7323 4.649088 ATTTATAAAGTCGGGCTTTGGC 57.351 40.909 17.37 0.00 46.07 4.52
2744 7324 6.695713 GCTTTATTTATAAAGTCGGGCTTTGG 59.304 38.462 17.37 0.00 46.78 3.28
2745 7325 6.695713 GGCTTTATTTATAAAGTCGGGCTTTG 59.304 38.462 17.37 0.00 46.78 2.77
2746 7326 6.802608 GGCTTTATTTATAAAGTCGGGCTTT 58.197 36.000 12.74 12.74 46.78 3.51
2747 7327 6.387041 GGCTTTATTTATAAAGTCGGGCTT 57.613 37.500 18.51 0.00 46.78 4.35
2769 7349 3.792047 CGTGACGCTGCCATGTGG 61.792 66.667 0.00 0.00 38.53 4.17
2770 7350 1.638388 ATTCGTGACGCTGCCATGTG 61.638 55.000 0.00 0.00 0.00 3.21
2771 7351 0.108377 TATTCGTGACGCTGCCATGT 60.108 50.000 0.00 0.00 0.00 3.21
2772 7352 1.220529 ATATTCGTGACGCTGCCATG 58.779 50.000 0.00 0.00 0.00 3.66
2773 7353 1.867233 GAATATTCGTGACGCTGCCAT 59.133 47.619 0.00 0.00 0.00 4.40
2774 7354 1.286501 GAATATTCGTGACGCTGCCA 58.713 50.000 0.00 0.00 0.00 4.92
2775 7355 1.286501 TGAATATTCGTGACGCTGCC 58.713 50.000 10.80 0.00 0.00 4.85
2776 7356 2.285834 CCTTGAATATTCGTGACGCTGC 60.286 50.000 10.80 0.00 0.00 5.25
2777 7357 2.930040 ACCTTGAATATTCGTGACGCTG 59.070 45.455 10.80 0.00 0.00 5.18
2778 7358 3.247006 ACCTTGAATATTCGTGACGCT 57.753 42.857 10.80 0.00 0.00 5.07
2779 7359 3.369756 TGAACCTTGAATATTCGTGACGC 59.630 43.478 10.80 0.53 0.00 5.19
2780 7360 4.387559 TGTGAACCTTGAATATTCGTGACG 59.612 41.667 10.80 0.00 0.00 4.35
2781 7361 5.178623 TGTGTGAACCTTGAATATTCGTGAC 59.821 40.000 10.80 4.80 0.00 3.67
2782 7362 5.301555 TGTGTGAACCTTGAATATTCGTGA 58.698 37.500 10.80 0.00 0.00 4.35
2783 7363 5.605564 TGTGTGAACCTTGAATATTCGTG 57.394 39.130 10.80 5.86 0.00 4.35
2784 7364 6.655003 AGATTGTGTGAACCTTGAATATTCGT 59.345 34.615 10.80 0.15 0.00 3.85
2785 7365 7.076842 AGATTGTGTGAACCTTGAATATTCG 57.923 36.000 10.80 0.00 0.00 3.34
2786 7366 8.044060 TGAGATTGTGTGAACCTTGAATATTC 57.956 34.615 8.60 8.60 0.00 1.75
2787 7367 7.884877 TCTGAGATTGTGTGAACCTTGAATATT 59.115 33.333 0.00 0.00 0.00 1.28
2788 7368 7.397221 TCTGAGATTGTGTGAACCTTGAATAT 58.603 34.615 0.00 0.00 0.00 1.28
2789 7369 6.768483 TCTGAGATTGTGTGAACCTTGAATA 58.232 36.000 0.00 0.00 0.00 1.75
2790 7370 5.624159 TCTGAGATTGTGTGAACCTTGAAT 58.376 37.500 0.00 0.00 0.00 2.57
2791 7371 5.034852 TCTGAGATTGTGTGAACCTTGAA 57.965 39.130 0.00 0.00 0.00 2.69
2792 7372 4.687901 TCTGAGATTGTGTGAACCTTGA 57.312 40.909 0.00 0.00 0.00 3.02
2793 7373 5.066375 TGTTTCTGAGATTGTGTGAACCTTG 59.934 40.000 0.00 0.00 0.00 3.61
2794 7374 5.066505 GTGTTTCTGAGATTGTGTGAACCTT 59.933 40.000 0.00 0.00 0.00 3.50
2795 7375 4.576463 GTGTTTCTGAGATTGTGTGAACCT 59.424 41.667 0.00 0.00 0.00 3.50
2796 7376 4.335315 TGTGTTTCTGAGATTGTGTGAACC 59.665 41.667 0.00 0.00 0.00 3.62
2797 7377 5.484173 TGTGTTTCTGAGATTGTGTGAAC 57.516 39.130 0.00 0.00 0.00 3.18
2798 7378 6.374053 TCTTTGTGTTTCTGAGATTGTGTGAA 59.626 34.615 0.00 0.00 0.00 3.18
2799 7379 5.879777 TCTTTGTGTTTCTGAGATTGTGTGA 59.120 36.000 0.00 0.00 0.00 3.58
2800 7380 6.037500 TCTCTTTGTGTTTCTGAGATTGTGTG 59.962 38.462 0.00 0.00 0.00 3.82
2801 7381 6.115446 TCTCTTTGTGTTTCTGAGATTGTGT 58.885 36.000 0.00 0.00 0.00 3.72
2802 7382 6.609237 TCTCTTTGTGTTTCTGAGATTGTG 57.391 37.500 0.00 0.00 0.00 3.33
2803 7383 6.825721 ACTTCTCTTTGTGTTTCTGAGATTGT 59.174 34.615 0.00 0.00 34.35 2.71
2804 7384 7.256756 ACTTCTCTTTGTGTTTCTGAGATTG 57.743 36.000 0.00 0.00 34.35 2.67
2805 7385 7.872113 AACTTCTCTTTGTGTTTCTGAGATT 57.128 32.000 0.00 0.00 34.35 2.40
2806 7386 8.964476 TTAACTTCTCTTTGTGTTTCTGAGAT 57.036 30.769 0.00 0.00 34.35 2.75
2807 7387 8.786826 TTTAACTTCTCTTTGTGTTTCTGAGA 57.213 30.769 0.00 0.00 32.73 3.27
2810 7390 9.884465 CCTATTTAACTTCTCTTTGTGTTTCTG 57.116 33.333 0.00 0.00 0.00 3.02
2811 7391 8.568794 GCCTATTTAACTTCTCTTTGTGTTTCT 58.431 33.333 0.00 0.00 0.00 2.52
2812 7392 8.568794 AGCCTATTTAACTTCTCTTTGTGTTTC 58.431 33.333 0.00 0.00 0.00 2.78
2813 7393 8.465273 AGCCTATTTAACTTCTCTTTGTGTTT 57.535 30.769 0.00 0.00 0.00 2.83
2814 7394 7.719633 TGAGCCTATTTAACTTCTCTTTGTGTT 59.280 33.333 0.00 0.00 0.00 3.32
2815 7395 7.224297 TGAGCCTATTTAACTTCTCTTTGTGT 58.776 34.615 0.00 0.00 0.00 3.72
2816 7396 7.672983 TGAGCCTATTTAACTTCTCTTTGTG 57.327 36.000 0.00 0.00 0.00 3.33
2817 7397 8.691661 TTTGAGCCTATTTAACTTCTCTTTGT 57.308 30.769 0.00 0.00 0.00 2.83
2818 7398 8.787852 ACTTTGAGCCTATTTAACTTCTCTTTG 58.212 33.333 0.00 0.00 0.00 2.77
2819 7399 8.926092 ACTTTGAGCCTATTTAACTTCTCTTT 57.074 30.769 0.00 0.00 0.00 2.52
2820 7400 9.438228 GTACTTTGAGCCTATTTAACTTCTCTT 57.562 33.333 0.00 0.00 0.00 2.85
2821 7401 8.817876 AGTACTTTGAGCCTATTTAACTTCTCT 58.182 33.333 0.00 0.00 0.00 3.10
2825 7405 9.148104 CGTTAGTACTTTGAGCCTATTTAACTT 57.852 33.333 0.00 0.00 0.00 2.66
2826 7406 8.526147 TCGTTAGTACTTTGAGCCTATTTAACT 58.474 33.333 0.00 0.00 0.00 2.24
2827 7407 8.693542 TCGTTAGTACTTTGAGCCTATTTAAC 57.306 34.615 0.00 0.00 0.00 2.01
2828 7408 9.709495 TTTCGTTAGTACTTTGAGCCTATTTAA 57.291 29.630 0.00 0.00 0.00 1.52
2829 7409 9.143631 GTTTCGTTAGTACTTTGAGCCTATTTA 57.856 33.333 0.00 0.00 0.00 1.40
2830 7410 7.658575 TGTTTCGTTAGTACTTTGAGCCTATTT 59.341 33.333 0.00 0.00 0.00 1.40
2831 7411 7.156673 TGTTTCGTTAGTACTTTGAGCCTATT 58.843 34.615 0.00 0.00 0.00 1.73
2832 7412 6.694447 TGTTTCGTTAGTACTTTGAGCCTAT 58.306 36.000 0.00 0.00 0.00 2.57
2833 7413 6.088016 TGTTTCGTTAGTACTTTGAGCCTA 57.912 37.500 0.00 0.00 0.00 3.93
2834 7414 4.952460 TGTTTCGTTAGTACTTTGAGCCT 58.048 39.130 0.00 0.00 0.00 4.58
2835 7415 4.151867 CCTGTTTCGTTAGTACTTTGAGCC 59.848 45.833 0.00 0.00 0.00 4.70
2836 7416 4.377124 GCCTGTTTCGTTAGTACTTTGAGC 60.377 45.833 0.00 0.00 0.00 4.26
2837 7417 4.748102 TGCCTGTTTCGTTAGTACTTTGAG 59.252 41.667 0.00 0.00 0.00 3.02
2838 7418 4.695396 TGCCTGTTTCGTTAGTACTTTGA 58.305 39.130 0.00 0.00 0.00 2.69
2839 7419 4.610680 GCTGCCTGTTTCGTTAGTACTTTG 60.611 45.833 0.00 0.00 0.00 2.77
2840 7420 3.497262 GCTGCCTGTTTCGTTAGTACTTT 59.503 43.478 0.00 0.00 0.00 2.66
2841 7421 3.064931 GCTGCCTGTTTCGTTAGTACTT 58.935 45.455 0.00 0.00 0.00 2.24
2842 7422 2.299297 AGCTGCCTGTTTCGTTAGTACT 59.701 45.455 0.00 0.00 0.00 2.73
2843 7423 2.412089 CAGCTGCCTGTTTCGTTAGTAC 59.588 50.000 0.00 0.00 34.31 2.73
2844 7424 2.683968 CAGCTGCCTGTTTCGTTAGTA 58.316 47.619 0.00 0.00 34.31 1.82
2845 7425 1.512926 CAGCTGCCTGTTTCGTTAGT 58.487 50.000 0.00 0.00 34.31 2.24
2846 7426 0.166814 GCAGCTGCCTGTTTCGTTAG 59.833 55.000 28.76 0.00 41.26 2.34
2847 7427 2.244000 GCAGCTGCCTGTTTCGTTA 58.756 52.632 28.76 0.00 41.26 3.18
2848 7428 3.034030 GCAGCTGCCTGTTTCGTT 58.966 55.556 28.76 0.00 41.26 3.85
2865 7445 4.326766 CCTGCGTGCCGTGTTTGG 62.327 66.667 0.00 0.00 0.00 3.28
2866 7446 4.980903 GCCTGCGTGCCGTGTTTG 62.981 66.667 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.