Multiple sequence alignment - TraesCS6B01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G237600 chr6B 100.000 8016 0 0 1 8016 412163057 412155042 0.000000e+00 14803.0
1 TraesCS6B01G237600 chr6B 99.290 2677 16 2 2760 5436 522327312 522329985 0.000000e+00 4835.0
2 TraesCS6B01G237600 chr6B 99.327 2673 15 2 2764 5436 455424105 455421436 0.000000e+00 4833.0
3 TraesCS6B01G237600 chr6B 100.000 155 0 0 345 499 641890522 641890676 3.660000e-73 287.0
4 TraesCS6B01G237600 chr6A 99.328 2677 15 2 2760 5436 234186034 234188707 0.000000e+00 4841.0
5 TraesCS6B01G237600 chr6A 99.289 2672 16 2 2765 5436 222648474 222651142 0.000000e+00 4826.0
6 TraesCS6B01G237600 chr6A 94.470 2369 50 27 5442 7795 374890536 374892838 0.000000e+00 3574.0
7 TraesCS6B01G237600 chr6A 95.642 1262 29 6 502 1761 374887708 374888945 0.000000e+00 2002.0
8 TraesCS6B01G237600 chr6A 96.619 976 33 0 1767 2742 374889191 374890166 0.000000e+00 1620.0
9 TraesCS6B01G237600 chr6A 96.830 347 10 1 1 347 374887377 374887722 5.390000e-161 579.0
10 TraesCS6B01G237600 chr6A 97.207 179 4 1 7839 8016 36496112 36495934 1.310000e-77 302.0
11 TraesCS6B01G237600 chr6A 98.726 157 2 0 343 499 9366108 9365952 6.130000e-71 279.0
12 TraesCS6B01G237600 chr1B 99.290 2675 15 3 2762 5436 151842944 151845614 0.000000e+00 4831.0
13 TraesCS6B01G237600 chr1B 96.237 186 6 1 7832 8016 484457850 484457665 3.630000e-78 303.0
14 TraesCS6B01G237600 chr1B 97.222 180 4 1 7838 8016 507923233 507923054 3.630000e-78 303.0
15 TraesCS6B01G237600 chr1B 100.000 151 0 0 349 499 410793642 410793792 6.130000e-71 279.0
16 TraesCS6B01G237600 chr1B 98.101 158 3 0 342 499 33923055 33923212 7.920000e-70 276.0
17 TraesCS6B01G237600 chr7B 99.180 2682 18 3 2755 5436 700429987 700427310 0.000000e+00 4828.0
18 TraesCS6B01G237600 chr7B 97.222 180 4 1 7838 8016 663837925 663837746 3.630000e-78 303.0
19 TraesCS6B01G237600 chr7B 92.308 39 3 0 6237 6275 284966610 284966572 1.000000e-03 56.5
20 TraesCS6B01G237600 chr2B 99.252 2674 17 2 2763 5436 683123119 683125789 0.000000e+00 4824.0
21 TraesCS6B01G237600 chr2B 99.141 2677 20 2 2760 5436 674790033 674787360 0.000000e+00 4813.0
22 TraesCS6B01G237600 chr2B 97.191 178 5 0 7839 8016 663864255 663864432 1.310000e-77 302.0
23 TraesCS6B01G237600 chr2B 95.652 184 6 2 7832 8013 734073522 734073705 2.190000e-75 294.0
24 TraesCS6B01G237600 chr4A 99.178 2676 19 2 2761 5436 624978329 624981001 0.000000e+00 4817.0
25 TraesCS6B01G237600 chr4A 97.753 178 4 0 7839 8016 5254837 5255014 2.810000e-79 307.0
26 TraesCS6B01G237600 chr4A 91.176 102 9 0 7490 7591 606584342 606584241 1.080000e-28 139.0
27 TraesCS6B01G237600 chr6D 95.744 2420 62 22 5442 7840 265178673 265181072 0.000000e+00 3860.0
28 TraesCS6B01G237600 chr6D 96.038 1262 23 8 502 1761 265174621 265175857 0.000000e+00 2028.0
29 TraesCS6B01G237600 chr6D 96.897 709 22 0 2034 2742 265177593 265178301 0.000000e+00 1188.0
30 TraesCS6B01G237600 chr6D 95.977 348 13 1 1 348 265174290 265174636 1.510000e-156 564.0
31 TraesCS6B01G237600 chr6D 95.429 175 8 0 1762 1936 265175932 265176106 6.130000e-71 279.0
32 TraesCS6B01G237600 chr6D 98.667 150 2 0 350 499 44244419 44244568 4.770000e-67 267.0
33 TraesCS6B01G237600 chr6D 99.320 147 1 0 353 499 128903241 128903095 4.770000e-67 267.0
34 TraesCS6B01G237600 chr6D 99.315 146 1 0 354 499 317477211 317477356 1.720000e-66 265.0
35 TraesCS6B01G237600 chr6D 97.351 151 3 1 349 499 95293690 95293839 1.030000e-63 255.0
36 TraesCS6B01G237600 chr6D 96.732 153 5 0 347 499 459048414 459048262 1.030000e-63 255.0
37 TraesCS6B01G237600 chr2D 96.237 186 6 1 7832 8016 618294481 618294666 3.630000e-78 303.0
38 TraesCS6B01G237600 chr2D 97.207 179 4 1 7839 8016 649373814 649373636 1.310000e-77 302.0
39 TraesCS6B01G237600 chr2D 98.052 154 3 0 346 499 173535956 173536109 1.330000e-67 268.0
40 TraesCS6B01G237600 chr2D 92.857 98 5 2 7494 7590 160195455 160195551 3.020000e-29 141.0
41 TraesCS6B01G237600 chr1A 99.371 159 1 0 341 499 538399278 538399436 1.020000e-73 289.0
42 TraesCS6B01G237600 chr1A 100.000 151 0 0 349 499 83827917 83828067 6.130000e-71 279.0
43 TraesCS6B01G237600 chr1A 99.342 152 1 0 348 499 3255906 3255755 7.920000e-70 276.0
44 TraesCS6B01G237600 chr1A 99.342 152 1 0 348 499 363424709 363424860 7.920000e-70 276.0
45 TraesCS6B01G237600 chr1A 99.342 152 1 0 348 499 583789132 583789283 7.920000e-70 276.0
46 TraesCS6B01G237600 chr5B 99.367 158 0 1 342 499 631794805 631794961 1.320000e-72 285.0
47 TraesCS6B01G237600 chr5B 100.000 152 0 0 348 499 403717741 403717892 1.700000e-71 281.0
48 TraesCS6B01G237600 chr4B 100.000 153 0 0 347 499 304888082 304887930 4.740000e-72 283.0
49 TraesCS6B01G237600 chr4B 100.000 152 0 0 348 499 193970494 193970645 1.700000e-71 281.0
50 TraesCS6B01G237600 chr4B 100.000 152 0 0 348 499 575905374 575905525 1.700000e-71 281.0
51 TraesCS6B01G237600 chr4B 88.991 109 12 0 7494 7602 640979249 640979141 1.400000e-27 135.0
52 TraesCS6B01G237600 chr2A 99.363 157 0 1 344 499 286446055 286445899 4.740000e-72 283.0
53 TraesCS6B01G237600 chr2A 95.833 168 5 2 334 499 564921554 564921387 3.690000e-68 270.0
54 TraesCS6B01G237600 chr2A 92.857 98 7 0 7494 7591 302053496 302053399 8.390000e-30 143.0
55 TraesCS6B01G237600 chr2A 90.000 110 9 2 7489 7598 728602668 728602561 3.020000e-29 141.0
56 TraesCS6B01G237600 chr5A 100.000 152 0 0 348 499 13889614 13889463 1.700000e-71 281.0
57 TraesCS6B01G237600 chr5A 100.000 152 0 0 348 499 596662346 596662195 1.700000e-71 281.0
58 TraesCS6B01G237600 chr5A 98.101 158 2 1 343 499 326661438 326661281 2.850000e-69 274.0
59 TraesCS6B01G237600 chrUn 99.342 152 1 0 348 499 284001555 284001706 7.920000e-70 276.0
60 TraesCS6B01G237600 chrUn 98.089 157 2 1 343 499 395339774 395339929 1.030000e-68 272.0
61 TraesCS6B01G237600 chrUn 98.039 153 3 0 347 499 12801963 12801811 4.770000e-67 267.0
62 TraesCS6B01G237600 chr4D 99.342 152 1 0 348 499 478512184 478512335 7.920000e-70 276.0
63 TraesCS6B01G237600 chr4D 98.667 150 2 0 350 499 254241200 254241349 4.770000e-67 267.0
64 TraesCS6B01G237600 chr4D 99.320 147 1 0 353 499 405455126 405455272 4.770000e-67 267.0
65 TraesCS6B01G237600 chr4D 98.658 149 2 0 351 499 443515146 443515294 1.720000e-66 265.0
66 TraesCS6B01G237600 chr4D 90.541 74 5 1 7746 7819 362125594 362125665 6.620000e-16 97.1
67 TraesCS6B01G237600 chr5D 98.693 153 2 0 347 499 548323027 548322875 1.030000e-68 272.0
68 TraesCS6B01G237600 chr5D 99.329 149 1 0 351 499 42925817 42925669 3.690000e-68 270.0
69 TraesCS6B01G237600 chr5D 98.684 152 2 0 348 499 542099220 542099069 3.690000e-68 270.0
70 TraesCS6B01G237600 chr5D 98.026 152 3 0 348 499 50385989 50386140 1.720000e-66 265.0
71 TraesCS6B01G237600 chr7D 98.675 151 2 0 349 499 50058978 50058828 1.330000e-67 268.0
72 TraesCS6B01G237600 chr7D 90.385 104 10 0 7487 7590 57100431 57100328 3.900000e-28 137.0
73 TraesCS6B01G237600 chr7D 88.073 109 13 0 7490 7598 135974779 135974671 6.530000e-26 130.0
74 TraesCS6B01G237600 chr7D 92.308 39 3 0 6237 6275 332721494 332721456 1.000000e-03 56.5
75 TraesCS6B01G237600 chr1D 98.052 154 1 2 348 499 366097686 366097533 4.770000e-67 267.0
76 TraesCS6B01G237600 chr1D 97.987 149 3 0 351 499 20212339 20212487 7.980000e-65 259.0
77 TraesCS6B01G237600 chr1D 98.630 146 2 0 354 499 159912380 159912235 7.980000e-65 259.0
78 TraesCS6B01G237600 chr1D 98.630 146 2 0 354 499 267792575 267792430 7.980000e-65 259.0
79 TraesCS6B01G237600 chr1D 96.154 156 4 1 346 499 221932901 221932746 3.710000e-63 254.0
80 TraesCS6B01G237600 chr1D 97.945 146 2 1 354 499 211684930 211684786 1.340000e-62 252.0
81 TraesCS6B01G237600 chr1D 97.260 146 4 0 354 499 462960561 462960416 1.730000e-61 248.0
82 TraesCS6B01G237600 chr1D 96.053 152 5 1 348 499 166827479 166827329 6.210000e-61 246.0
83 TraesCS6B01G237600 chr1D 96.599 147 4 1 353 499 341039591 341039736 8.040000e-60 243.0
84 TraesCS6B01G237600 chr1D 95.973 149 5 1 348 496 60409609 60409756 2.890000e-59 241.0
85 TraesCS6B01G237600 chr3D 92.929 99 7 0 7492 7590 532994079 532994177 2.330000e-30 145.0
86 TraesCS6B01G237600 chr7A 92.308 39 3 0 6237 6275 369479468 369479430 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G237600 chr6B 412155042 412163057 8015 True 14803.00 14803 100.00000 1 8016 1 chr6B.!!$R1 8015
1 TraesCS6B01G237600 chr6B 522327312 522329985 2673 False 4835.00 4835 99.29000 2760 5436 1 chr6B.!!$F1 2676
2 TraesCS6B01G237600 chr6B 455421436 455424105 2669 True 4833.00 4833 99.32700 2764 5436 1 chr6B.!!$R2 2672
3 TraesCS6B01G237600 chr6A 234186034 234188707 2673 False 4841.00 4841 99.32800 2760 5436 1 chr6A.!!$F2 2676
4 TraesCS6B01G237600 chr6A 222648474 222651142 2668 False 4826.00 4826 99.28900 2765 5436 1 chr6A.!!$F1 2671
5 TraesCS6B01G237600 chr6A 374887377 374892838 5461 False 1943.75 3574 95.89025 1 7795 4 chr6A.!!$F3 7794
6 TraesCS6B01G237600 chr1B 151842944 151845614 2670 False 4831.00 4831 99.29000 2762 5436 1 chr1B.!!$F2 2674
7 TraesCS6B01G237600 chr7B 700427310 700429987 2677 True 4828.00 4828 99.18000 2755 5436 1 chr7B.!!$R3 2681
8 TraesCS6B01G237600 chr2B 683123119 683125789 2670 False 4824.00 4824 99.25200 2763 5436 1 chr2B.!!$F2 2673
9 TraesCS6B01G237600 chr2B 674787360 674790033 2673 True 4813.00 4813 99.14100 2760 5436 1 chr2B.!!$R1 2676
10 TraesCS6B01G237600 chr4A 624978329 624981001 2672 False 4817.00 4817 99.17800 2761 5436 1 chr4A.!!$F2 2675
11 TraesCS6B01G237600 chr6D 265174290 265181072 6782 False 1583.80 3860 96.01700 1 7840 5 chr6D.!!$F4 7839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.033796 CCTCATGGTCACAAGGCCAT 60.034 55.000 5.01 0.00 45.55 4.40 F
506 507 0.105760 TGGTCACAAGGCCATTGGTT 60.106 50.000 5.01 0.00 43.68 3.67 F
507 508 0.603065 GGTCACAAGGCCATTGGTTC 59.397 55.000 5.01 0.00 43.68 3.62 F
1062 1064 0.627451 TTGATCCCAGCTGGCTCATT 59.373 50.000 28.39 8.99 0.00 2.57 F
1785 2029 1.699634 CCCCTCTTTCCTGTGAAGTCA 59.300 52.381 0.00 0.00 0.00 3.41 F
2742 4375 1.001268 GACTGACTCAACTGAGCGTCA 60.001 52.381 6.63 4.46 45.79 4.35 F
3472 5105 0.489567 AACCTCCTCCTCCTCACACT 59.510 55.000 0.00 0.00 0.00 3.55 F
4214 5847 2.353803 CCTGGTTAGCCATACTATCGCC 60.354 54.545 0.00 0.00 45.05 5.54 F
4350 5983 0.461516 ACGCATGCTGGTCTCATCAG 60.462 55.000 17.13 0.00 35.49 2.90 F
5061 6694 0.535102 CACGCCTGTGTTCCCTTCTT 60.535 55.000 0.00 0.00 41.34 2.52 F
6275 7909 0.469917 CATACCGTTGGATGGCTCCT 59.530 55.000 4.92 0.00 42.59 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 3695 2.226912 AGACTAGCTCGTGAACACAGAC 59.773 50.000 0.00 0.00 0.00 3.51 R
2465 4098 3.750130 AGATATTCGATCAGCCAATGCAC 59.250 43.478 0.00 0.00 41.13 4.57 R
2647 4280 3.967326 CTGACTGGAATCCTACACCCATA 59.033 47.826 0.00 0.00 0.00 2.74 R
2718 4351 2.287849 CGCTCAGTTGAGTCAGTCAAGA 60.288 50.000 10.57 0.00 46.18 3.02 R
3472 5105 4.852134 TGTGCGGTTTCAGTACTACTAA 57.148 40.909 0.00 0.00 0.00 2.24 R
4214 5847 0.107654 GGAAAGGTCTCGGGGACATG 60.108 60.000 10.69 0.00 46.16 3.21 R
4350 5983 2.266554 CATTGAGCTGGACGACTCTTC 58.733 52.381 0.00 0.00 33.92 2.87 R
5939 7572 2.158914 TCATATGCATTGCTGACTCGGT 60.159 45.455 3.54 0.00 0.00 4.69 R
6173 7807 3.057174 CGAGCTTAACTGTTCTCTGGTCT 60.057 47.826 0.00 0.00 0.00 3.85 R
6597 8231 2.486472 ACAATCAGAACTCCCTGCAG 57.514 50.000 6.78 6.78 34.28 4.41 R
7883 9539 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.379243 CGACTGGTTCAGCCCGCT 62.379 66.667 0.00 0.00 34.37 5.52
136 137 2.363683 TGATGCAATGCGGTCACAATA 58.636 42.857 8.68 0.00 0.00 1.90
204 205 9.941325 TTAAATTTATGTGATTTTGTGCTGGAT 57.059 25.926 0.00 0.00 0.00 3.41
284 285 7.346751 TGGAATATCCATTGTTTAGGCTTTC 57.653 36.000 0.00 0.00 42.67 2.62
303 304 6.750501 GGCTTTCATTACTGCATGCATATATG 59.249 38.462 22.97 21.74 0.00 1.78
314 315 6.637657 TGCATGCATATATGTTCTCCTCTAG 58.362 40.000 18.46 0.00 0.00 2.43
338 339 1.713297 ACAGGGTCGTAGTTGGTTCT 58.287 50.000 0.00 0.00 0.00 3.01
339 340 2.044758 ACAGGGTCGTAGTTGGTTCTT 58.955 47.619 0.00 0.00 0.00 2.52
340 341 2.436911 ACAGGGTCGTAGTTGGTTCTTT 59.563 45.455 0.00 0.00 0.00 2.52
341 342 3.118149 ACAGGGTCGTAGTTGGTTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
342 343 3.881089 CAGGGTCGTAGTTGGTTCTTTTT 59.119 43.478 0.00 0.00 0.00 1.94
372 373 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
373 374 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
374 375 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
375 376 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
376 377 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
377 378 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
378 379 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
379 380 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
380 381 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
382 383 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
383 384 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
384 385 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
385 386 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
388 389 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
400 401 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
401 402 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
402 403 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
403 404 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
404 405 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
405 406 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
406 407 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
407 408 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
408 409 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
409 410 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
410 411 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
411 412 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
412 413 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
413 414 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
414 415 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
415 416 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
416 417 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
417 418 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
418 419 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
428 429 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
429 430 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
430 431 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
431 432 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
432 433 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
433 434 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
434 435 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
435 436 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
436 437 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
437 438 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
438 439 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
439 440 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
440 441 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
441 442 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
442 443 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
443 444 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
444 445 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
445 446 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
446 447 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
447 448 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
448 449 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
449 450 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
450 451 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
451 452 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
452 453 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
453 454 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
454 455 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
466 467 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
467 468 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
468 469 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
469 470 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
470 471 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
471 472 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
472 473 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
473 474 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
474 475 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
475 476 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
476 477 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
477 478 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
478 479 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
479 480 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
480 481 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
481 482 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
482 483 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
483 484 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
484 485 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
485 486 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
486 487 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
487 488 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
488 489 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
499 500 1.380302 ACCTCATGGTCACAAGGCC 59.620 57.895 0.00 0.00 44.78 5.19
500 501 1.379916 CCTCATGGTCACAAGGCCA 59.620 57.895 5.01 0.00 39.33 5.36
501 502 0.033796 CCTCATGGTCACAAGGCCAT 60.034 55.000 5.01 0.00 45.55 4.40
502 503 1.617804 CCTCATGGTCACAAGGCCATT 60.618 52.381 5.01 0.00 43.05 3.16
503 504 1.475280 CTCATGGTCACAAGGCCATTG 59.525 52.381 5.01 9.50 43.05 2.82
504 505 0.533491 CATGGTCACAAGGCCATTGG 59.467 55.000 5.01 0.00 43.05 3.16
505 506 0.114954 ATGGTCACAAGGCCATTGGT 59.885 50.000 5.01 0.00 42.34 3.67
506 507 0.105760 TGGTCACAAGGCCATTGGTT 60.106 50.000 5.01 0.00 43.68 3.67
507 508 0.603065 GGTCACAAGGCCATTGGTTC 59.397 55.000 5.01 0.00 43.68 3.62
508 509 1.620822 GTCACAAGGCCATTGGTTCT 58.379 50.000 5.01 0.00 43.68 3.01
578 580 4.679197 TGTTTACAAATTGTCGAATGCAGC 59.321 37.500 0.22 0.00 0.00 5.25
617 619 9.517609 AGTATACGTATTTTCAGTGAGATGTTC 57.482 33.333 14.33 0.00 0.00 3.18
658 660 3.846360 ACTTCCGAATACTTCCGTGAAG 58.154 45.455 10.85 10.85 44.37 3.02
659 661 3.508793 ACTTCCGAATACTTCCGTGAAGA 59.491 43.478 17.18 5.06 41.71 2.87
660 662 4.021719 ACTTCCGAATACTTCCGTGAAGAA 60.022 41.667 17.18 0.00 41.71 2.52
690 692 5.692115 TTGCATACACCAGATCCTTCTAA 57.308 39.130 0.00 0.00 0.00 2.10
727 729 3.059884 AGTGAAGTGCTCAATACGTGTG 58.940 45.455 0.00 0.00 35.22 3.82
757 759 5.371115 TGCTTATCTACCAACTTGCAAAC 57.629 39.130 0.00 0.00 0.00 2.93
1017 1019 1.488705 AAATGGAGTCGGGGAGCACA 61.489 55.000 0.00 0.00 0.00 4.57
1062 1064 0.627451 TTGATCCCAGCTGGCTCATT 59.373 50.000 28.39 8.99 0.00 2.57
1156 1158 2.095567 GGCTCGTCTGTTTACACTACGA 60.096 50.000 12.43 12.43 38.71 3.43
1157 1159 3.427233 GGCTCGTCTGTTTACACTACGAT 60.427 47.826 13.08 0.00 39.60 3.73
1158 1160 3.542704 GCTCGTCTGTTTACACTACGATG 59.457 47.826 13.08 9.89 39.60 3.84
1159 1161 4.720090 CTCGTCTGTTTACACTACGATGT 58.280 43.478 13.08 0.00 39.60 3.06
1160 1162 5.672073 GCTCGTCTGTTTACACTACGATGTA 60.672 44.000 13.08 0.00 39.60 2.29
1161 1163 5.621422 TCGTCTGTTTACACTACGATGTAC 58.379 41.667 10.12 0.00 37.20 2.90
1238 1241 5.074804 TGATGATTCATGATGATGGGGTTC 58.925 41.667 3.32 0.00 0.00 3.62
1662 1665 7.721286 GATCATTCATCGTGATCTTAAACCT 57.279 36.000 8.45 0.00 45.34 3.50
1663 1666 6.908870 TCATTCATCGTGATCTTAAACCTG 57.091 37.500 0.00 0.00 0.00 4.00
1664 1667 5.817296 TCATTCATCGTGATCTTAAACCTGG 59.183 40.000 0.00 0.00 0.00 4.45
1665 1668 4.819105 TCATCGTGATCTTAAACCTGGT 57.181 40.909 0.00 0.00 0.00 4.00
1666 1669 5.925506 TCATCGTGATCTTAAACCTGGTA 57.074 39.130 0.00 0.00 0.00 3.25
1667 1670 6.288941 TCATCGTGATCTTAAACCTGGTAA 57.711 37.500 0.00 0.00 0.00 2.85
1668 1671 6.338146 TCATCGTGATCTTAAACCTGGTAAG 58.662 40.000 0.00 0.81 0.00 2.34
1669 1672 5.988310 TCGTGATCTTAAACCTGGTAAGA 57.012 39.130 13.04 13.04 40.81 2.10
1670 1673 6.349243 TCGTGATCTTAAACCTGGTAAGAA 57.651 37.500 14.31 2.72 40.15 2.52
1671 1674 6.761312 TCGTGATCTTAAACCTGGTAAGAAA 58.239 36.000 14.31 5.44 40.15 2.52
1672 1675 6.647895 TCGTGATCTTAAACCTGGTAAGAAAC 59.352 38.462 14.31 13.81 40.15 2.78
1773 2017 1.773541 ACCCTGATTTCCCCCTCTTT 58.226 50.000 0.00 0.00 0.00 2.52
1785 2029 1.699634 CCCCTCTTTCCTGTGAAGTCA 59.300 52.381 0.00 0.00 0.00 3.41
1803 2047 6.761242 TGAAGTCAATTTATGCAGTACGCTAT 59.239 34.615 10.27 5.88 43.06 2.97
1805 2049 7.639162 AGTCAATTTATGCAGTACGCTATAC 57.361 36.000 10.27 0.00 43.06 1.47
1829 2073 5.845953 CGCGCCACTTTAATGTTCATAATAG 59.154 40.000 0.00 0.00 0.00 1.73
1987 2231 4.180723 ACCAAGTTAAGGGGATGTTAGGA 58.819 43.478 0.00 0.00 0.00 2.94
2062 3695 3.902261 TGCTCTGTTGTGTTAGCAATG 57.098 42.857 0.00 0.00 41.74 2.82
2068 3701 4.273235 TCTGTTGTGTTAGCAATGTCTGTG 59.727 41.667 0.00 0.00 0.00 3.66
2069 3702 3.944650 TGTTGTGTTAGCAATGTCTGTGT 59.055 39.130 0.00 0.00 0.00 3.72
2310 3943 8.519526 CAACAAGTAGCAAGAATAATTACCCAA 58.480 33.333 0.00 0.00 0.00 4.12
2411 4044 8.094798 TGTGTGTGACTTCTGTAATTTATTCC 57.905 34.615 0.00 0.00 0.00 3.01
2647 4280 5.359009 CAGATGAAGGTTGCTAAACATGGAT 59.641 40.000 0.00 0.00 38.10 3.41
2661 4294 5.930209 AACATGGATATGGGTGTAGGATT 57.070 39.130 0.00 0.00 38.66 3.01
2665 4298 3.909995 TGGATATGGGTGTAGGATTCCAG 59.090 47.826 5.29 0.00 32.30 3.86
2673 4306 4.080299 GGGTGTAGGATTCCAGTCAGATTT 60.080 45.833 5.29 0.00 0.00 2.17
2717 4350 4.565652 GCAAAATTAGGACAGGGAGACAGA 60.566 45.833 0.00 0.00 0.00 3.41
2718 4351 5.749462 CAAAATTAGGACAGGGAGACAGAT 58.251 41.667 0.00 0.00 0.00 2.90
2742 4375 1.001268 GACTGACTCAACTGAGCGTCA 60.001 52.381 6.63 4.46 45.79 4.35
2744 4377 2.057316 CTGACTCAACTGAGCGTCAAG 58.943 52.381 6.63 0.00 45.79 3.02
2745 4378 1.681264 TGACTCAACTGAGCGTCAAGA 59.319 47.619 6.63 0.00 45.79 3.02
2746 4379 2.297315 TGACTCAACTGAGCGTCAAGAT 59.703 45.455 6.63 0.00 45.79 2.40
2748 4381 3.733337 ACTCAACTGAGCGTCAAGATTT 58.267 40.909 6.63 0.00 45.79 2.17
2749 4382 3.496130 ACTCAACTGAGCGTCAAGATTTG 59.504 43.478 6.63 0.00 45.79 2.32
2750 4383 3.466836 TCAACTGAGCGTCAAGATTTGT 58.533 40.909 0.00 0.00 0.00 2.83
2751 4384 3.876914 TCAACTGAGCGTCAAGATTTGTT 59.123 39.130 0.00 0.00 0.00 2.83
2752 4385 3.885484 ACTGAGCGTCAAGATTTGTTG 57.115 42.857 0.00 0.00 0.00 3.33
2753 4386 2.549754 ACTGAGCGTCAAGATTTGTTGG 59.450 45.455 0.00 0.00 0.00 3.77
2754 4387 2.807967 CTGAGCGTCAAGATTTGTTGGA 59.192 45.455 0.00 0.00 0.00 3.53
2755 4388 3.411446 TGAGCGTCAAGATTTGTTGGAT 58.589 40.909 0.00 0.00 0.00 3.41
2756 4389 3.436704 TGAGCGTCAAGATTTGTTGGATC 59.563 43.478 0.00 0.00 0.00 3.36
2757 4390 3.679389 AGCGTCAAGATTTGTTGGATCT 58.321 40.909 0.00 0.00 35.43 2.75
3472 5105 0.489567 AACCTCCTCCTCCTCACACT 59.510 55.000 0.00 0.00 0.00 3.55
3645 5278 3.397527 ACACCATGGGATATCTCCTTGT 58.602 45.455 18.09 3.98 41.74 3.16
3646 5279 4.566837 ACACCATGGGATATCTCCTTGTA 58.433 43.478 18.09 0.00 41.74 2.41
4214 5847 2.353803 CCTGGTTAGCCATACTATCGCC 60.354 54.545 0.00 0.00 45.05 5.54
4243 5876 2.495084 GAGACCTTTCCACACCTCAAC 58.505 52.381 0.00 0.00 0.00 3.18
4350 5983 0.461516 ACGCATGCTGGTCTCATCAG 60.462 55.000 17.13 0.00 35.49 2.90
4438 6071 4.564406 CCGCCATCTATGCTTAATCTCCTT 60.564 45.833 0.00 0.00 0.00 3.36
5061 6694 0.535102 CACGCCTGTGTTCCCTTCTT 60.535 55.000 0.00 0.00 41.34 2.52
5436 7069 1.834263 ACTACCAGCTTGACCAGGATC 59.166 52.381 0.00 0.00 0.00 3.36
5437 7070 2.114616 CTACCAGCTTGACCAGGATCT 58.885 52.381 0.00 0.00 0.00 2.75
5438 7071 1.366319 ACCAGCTTGACCAGGATCTT 58.634 50.000 0.00 0.00 0.00 2.40
5439 7072 1.280421 ACCAGCTTGACCAGGATCTTC 59.720 52.381 0.00 0.00 0.00 2.87
5440 7073 1.649664 CAGCTTGACCAGGATCTTCG 58.350 55.000 0.00 0.00 0.00 3.79
5441 7074 1.205655 CAGCTTGACCAGGATCTTCGA 59.794 52.381 0.00 0.00 0.00 3.71
5442 7075 2.114616 AGCTTGACCAGGATCTTCGAT 58.885 47.619 0.00 0.00 0.00 3.59
5443 7076 2.503356 AGCTTGACCAGGATCTTCGATT 59.497 45.455 0.00 0.00 0.00 3.34
5444 7077 3.706594 AGCTTGACCAGGATCTTCGATTA 59.293 43.478 0.00 0.00 0.00 1.75
5445 7078 4.346418 AGCTTGACCAGGATCTTCGATTAT 59.654 41.667 0.00 0.00 0.00 1.28
5446 7079 5.540337 AGCTTGACCAGGATCTTCGATTATA 59.460 40.000 0.00 0.00 0.00 0.98
5447 7080 6.042093 AGCTTGACCAGGATCTTCGATTATAA 59.958 38.462 0.00 0.00 0.00 0.98
5598 7231 5.756347 CCATATTTTTGGTGCATCAGATTGG 59.244 40.000 0.00 0.00 31.74 3.16
5615 7248 3.735720 TTGGACATGATGTGGAATGGA 57.264 42.857 1.23 0.00 0.00 3.41
5647 7280 3.631250 TCAAAGAACTGCTCCCAAGTTT 58.369 40.909 0.00 0.00 0.00 2.66
5649 7282 2.736670 AGAACTGCTCCCAAGTTTGT 57.263 45.000 0.00 0.00 0.00 2.83
5657 7290 5.539955 ACTGCTCCCAAGTTTGTGAAATTAT 59.460 36.000 0.00 0.00 0.00 1.28
5682 7315 5.865085 TCCAGTTTGTACTAACAAGATGCT 58.135 37.500 19.88 0.00 45.99 3.79
5791 7424 3.860754 GCACTTTTTACCATGTTCCAGGC 60.861 47.826 0.00 0.00 0.00 4.85
5854 7487 5.173312 CAGATAGTTATACTTTGGTGCGACG 59.827 44.000 0.00 0.00 0.00 5.12
6275 7909 0.469917 CATACCGTTGGATGGCTCCT 59.530 55.000 4.92 0.00 42.59 3.69
7281 8916 2.077821 TTGCGCGCCCATCGTATAGA 62.078 55.000 30.77 0.96 41.07 1.98
7282 8917 1.153823 GCGCGCCCATCGTATAGAT 60.154 57.895 23.24 0.00 41.01 1.98
7427 9078 3.723554 GAGTGGGACTGCTAACTCG 57.276 57.895 0.00 0.00 30.61 4.18
7489 9140 9.394767 ACAAAACACTGATGCAATGATATACTA 57.605 29.630 0.00 0.00 0.00 1.82
7598 9249 4.459330 AGACGGAGGGAGTAGTATGTAAC 58.541 47.826 0.00 0.00 0.00 2.50
7663 9314 1.718757 GCCCAATGCGAGGATGACAC 61.719 60.000 0.00 0.00 0.00 3.67
7664 9315 1.097547 CCCAATGCGAGGATGACACC 61.098 60.000 0.00 0.00 0.00 4.16
7673 9329 3.864921 GCGAGGATGACACCTTTAGTTGT 60.865 47.826 0.00 0.00 40.73 3.32
7738 9394 4.640789 AATTGCCGTTTGTGTCAACTTA 57.359 36.364 0.00 0.00 0.00 2.24
7814 9470 3.778718 CGTCGAAAACATTAGATTTGCCG 59.221 43.478 0.00 0.00 0.00 5.69
7840 9496 0.166379 GCGCCATTTGCAAACAATGG 59.834 50.000 21.10 21.10 41.33 3.16
7841 9497 1.510776 CGCCATTTGCAAACAATGGT 58.489 45.000 24.30 3.86 41.33 3.55
7842 9498 1.872313 CGCCATTTGCAAACAATGGTT 59.128 42.857 24.30 3.19 41.33 3.67
7843 9499 2.349627 CGCCATTTGCAAACAATGGTTG 60.350 45.455 24.30 16.44 41.33 3.77
7844 9500 2.030981 GCCATTTGCAAACAATGGTTGG 60.031 45.455 24.30 21.03 40.77 3.77
7845 9501 3.474600 CCATTTGCAAACAATGGTTGGA 58.525 40.909 15.41 7.21 37.30 3.53
7846 9502 4.073549 CCATTTGCAAACAATGGTTGGAT 58.926 39.130 15.41 0.00 37.30 3.41
7847 9503 4.083217 CCATTTGCAAACAATGGTTGGATG 60.083 41.667 15.41 6.17 37.30 3.51
7848 9504 2.835580 TGCAAACAATGGTTGGATGG 57.164 45.000 13.37 0.00 37.30 3.51
7849 9505 2.045524 TGCAAACAATGGTTGGATGGT 58.954 42.857 13.37 0.00 37.30 3.55
7850 9506 2.437281 TGCAAACAATGGTTGGATGGTT 59.563 40.909 13.37 0.00 37.30 3.67
7851 9507 3.643320 TGCAAACAATGGTTGGATGGTTA 59.357 39.130 13.37 0.00 37.30 2.85
7852 9508 4.244862 GCAAACAATGGTTGGATGGTTAG 58.755 43.478 13.37 0.00 37.30 2.34
7853 9509 4.021544 GCAAACAATGGTTGGATGGTTAGA 60.022 41.667 13.37 0.00 37.30 2.10
7854 9510 5.713025 CAAACAATGGTTGGATGGTTAGAG 58.287 41.667 2.50 0.00 37.30 2.43
7855 9511 3.968265 ACAATGGTTGGATGGTTAGAGG 58.032 45.455 0.00 0.00 34.12 3.69
7856 9512 3.290710 CAATGGTTGGATGGTTAGAGGG 58.709 50.000 0.00 0.00 0.00 4.30
7857 9513 2.352561 TGGTTGGATGGTTAGAGGGA 57.647 50.000 0.00 0.00 0.00 4.20
7858 9514 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
7860 9516 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
7861 9517 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
7862 9518 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
7863 9519 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
7864 9520 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
7865 9521 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
7866 9522 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
7867 9523 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
7868 9524 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
7873 9529 1.527370 GGACTGTGGTATCCCAGCC 59.473 63.158 0.00 0.00 42.94 4.85
7874 9530 1.527370 GACTGTGGTATCCCAGCCC 59.473 63.158 0.00 0.00 42.94 5.19
7875 9531 1.229820 ACTGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
7876 9532 0.624500 ACTGTGGTATCCCAGCCCAT 60.625 55.000 0.00 0.00 42.94 4.00
7877 9533 0.109342 CTGTGGTATCCCAGCCCATC 59.891 60.000 0.00 0.00 42.94 3.51
7878 9534 0.623031 TGTGGTATCCCAGCCCATCA 60.623 55.000 0.00 0.00 42.94 3.07
7879 9535 0.109342 GTGGTATCCCAGCCCATCAG 59.891 60.000 0.00 0.00 42.94 2.90
7880 9536 1.061905 TGGTATCCCAGCCCATCAGG 61.062 60.000 0.00 0.00 35.17 3.86
7896 9552 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
7897 9553 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
7898 9554 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
7899 9555 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
7900 9556 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
7901 9557 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
7902 9558 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
7903 9559 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
7904 9560 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
7905 9561 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
7906 9562 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
7907 9563 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
7908 9564 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
7909 9565 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
7910 9566 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
7911 9567 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
7912 9568 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
7913 9569 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
7914 9570 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
7915 9571 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
7916 9572 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
7917 9573 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
7918 9574 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
7919 9575 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
7920 9576 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
7921 9577 7.327032 GCTCGCATTTATTCCTGGATTTATTTC 59.673 37.037 0.00 0.00 0.00 2.17
7922 9578 8.231692 TCGCATTTATTCCTGGATTTATTTCA 57.768 30.769 0.00 0.00 0.00 2.69
7923 9579 8.352201 TCGCATTTATTCCTGGATTTATTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
7924 9580 7.596248 CGCATTTATTCCTGGATTTATTTCAGG 59.404 37.037 0.00 0.00 46.91 3.86
7932 9588 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
7933 9589 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
7934 9590 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
7935 9591 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
7936 9592 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
7937 9593 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
7938 9594 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
7939 9595 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
7950 9606 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
7951 9607 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
7952 9608 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
7953 9609 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
7954 9610 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
7955 9611 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
7956 9612 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
7957 9613 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
7958 9614 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
7959 9615 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
7960 9616 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
7961 9617 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
7982 9638 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
7983 9639 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
7984 9640 2.683859 CGACGACGAGGTGCCTACA 61.684 63.158 0.00 0.00 42.66 2.74
7985 9641 1.136984 GACGACGAGGTGCCTACAG 59.863 63.158 0.00 0.00 0.00 2.74
7986 9642 1.584380 GACGACGAGGTGCCTACAGT 61.584 60.000 0.00 0.00 0.00 3.55
7987 9643 1.154016 CGACGAGGTGCCTACAGTG 60.154 63.158 0.00 0.00 0.00 3.66
7988 9644 1.583495 CGACGAGGTGCCTACAGTGA 61.583 60.000 0.00 0.00 0.00 3.41
7989 9645 0.109226 GACGAGGTGCCTACAGTGAC 60.109 60.000 0.00 0.00 0.00 3.67
7990 9646 0.539901 ACGAGGTGCCTACAGTGACT 60.540 55.000 0.00 0.00 0.00 3.41
7991 9647 0.603569 CGAGGTGCCTACAGTGACTT 59.396 55.000 0.00 0.00 0.00 3.01
7992 9648 1.402984 CGAGGTGCCTACAGTGACTTC 60.403 57.143 0.00 0.00 0.00 3.01
7993 9649 0.603569 AGGTGCCTACAGTGACTTCG 59.396 55.000 0.00 0.00 0.00 3.79
7994 9650 0.317479 GGTGCCTACAGTGACTTCGT 59.683 55.000 0.00 0.00 0.00 3.85
7995 9651 1.542915 GGTGCCTACAGTGACTTCGTA 59.457 52.381 0.00 0.00 0.00 3.43
7996 9652 2.415625 GGTGCCTACAGTGACTTCGTAG 60.416 54.545 0.00 3.77 33.82 3.51
7997 9653 2.486982 GTGCCTACAGTGACTTCGTAGA 59.513 50.000 10.63 0.00 35.65 2.59
7998 9654 3.128938 GTGCCTACAGTGACTTCGTAGAT 59.871 47.826 10.63 0.00 35.65 1.98
7999 9655 3.762288 TGCCTACAGTGACTTCGTAGATT 59.238 43.478 10.63 0.00 35.65 2.40
8000 9656 4.219944 TGCCTACAGTGACTTCGTAGATTT 59.780 41.667 10.63 0.00 35.65 2.17
8001 9657 4.799428 GCCTACAGTGACTTCGTAGATTTC 59.201 45.833 10.63 0.00 35.65 2.17
8002 9658 5.621555 GCCTACAGTGACTTCGTAGATTTCA 60.622 44.000 10.63 0.00 35.65 2.69
8003 9659 6.387465 CCTACAGTGACTTCGTAGATTTCAA 58.613 40.000 10.63 0.00 35.65 2.69
8004 9660 6.528423 CCTACAGTGACTTCGTAGATTTCAAG 59.472 42.308 10.63 0.00 35.65 3.02
8005 9661 6.085555 ACAGTGACTTCGTAGATTTCAAGA 57.914 37.500 0.00 0.00 35.04 3.02
8006 9662 6.692486 ACAGTGACTTCGTAGATTTCAAGAT 58.308 36.000 0.00 0.00 35.04 2.40
8007 9663 6.587990 ACAGTGACTTCGTAGATTTCAAGATG 59.412 38.462 0.00 0.00 35.04 2.90
8008 9664 6.808704 CAGTGACTTCGTAGATTTCAAGATGA 59.191 38.462 0.00 0.00 35.04 2.92
8009 9665 7.490725 CAGTGACTTCGTAGATTTCAAGATGAT 59.509 37.037 0.00 0.00 35.04 2.45
8010 9666 8.687242 AGTGACTTCGTAGATTTCAAGATGATA 58.313 33.333 0.00 0.00 35.04 2.15
8011 9667 9.469807 GTGACTTCGTAGATTTCAAGATGATAT 57.530 33.333 0.00 0.00 35.04 1.63
8012 9668 9.468532 TGACTTCGTAGATTTCAAGATGATATG 57.531 33.333 0.00 0.00 35.04 1.78
8013 9669 8.304202 ACTTCGTAGATTTCAAGATGATATGC 57.696 34.615 0.00 0.00 35.04 3.14
8014 9670 7.386299 ACTTCGTAGATTTCAAGATGATATGCC 59.614 37.037 0.00 0.00 35.04 4.40
8015 9671 5.863935 TCGTAGATTTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.591429 CGTGACCTGCTTGGCACA 60.591 61.111 11.72 3.61 40.45 4.57
204 205 5.368145 ACTGAGTGAGTTACTTGAATGCAA 58.632 37.500 0.00 0.00 40.53 4.08
273 274 4.800471 GCATGCAGTAATGAAAGCCTAAAC 59.200 41.667 14.21 0.00 0.00 2.01
284 285 7.336176 AGGAGAACATATATGCATGCAGTAATG 59.664 37.037 26.69 25.98 0.00 1.90
314 315 1.607251 CCAACTACGACCCTGTTCACC 60.607 57.143 0.00 0.00 0.00 4.02
348 349 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
349 350 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
354 355 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
355 356 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
356 357 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
357 358 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
358 359 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
359 360 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
360 361 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
361 362 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
362 363 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
383 384 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
384 385 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
385 386 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
386 387 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
387 388 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
388 389 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
389 390 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
390 391 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
391 392 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
392 393 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
393 394 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
394 395 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
395 396 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
396 397 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
397 398 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
398 399 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
399 400 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
400 401 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
401 402 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
402 403 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
407 408 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
408 409 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
409 410 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
410 411 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
411 412 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
412 413 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
413 414 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
414 415 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
415 416 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
416 417 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
417 418 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
418 419 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
419 420 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
420 421 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
421 422 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
422 423 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
423 424 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
424 425 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
425 426 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
426 427 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
427 428 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
428 429 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
429 430 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
430 431 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
431 432 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
432 433 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
433 434 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
434 435 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
435 436 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
436 437 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
437 438 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
438 439 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
439 440 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
440 441 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
441 442 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
442 443 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
443 444 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
444 445 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
458 459 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
459 460 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
460 461 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
461 462 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
462 463 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
463 464 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
464 465 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
465 466 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
466 467 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
467 468 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
468 469 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
469 470 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
470 471 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
471 472 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
472 473 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
482 483 0.033796 ATGGCCTTGTGACCATGAGG 60.034 55.000 3.32 0.00 45.03 3.86
483 484 1.475280 CAATGGCCTTGTGACCATGAG 59.525 52.381 3.32 0.00 46.04 2.90
484 485 1.548081 CAATGGCCTTGTGACCATGA 58.452 50.000 3.32 0.00 46.04 3.07
485 486 0.533491 CCAATGGCCTTGTGACCATG 59.467 55.000 3.32 0.00 46.04 3.66
487 488 0.105760 AACCAATGGCCTTGTGACCA 60.106 50.000 3.32 0.00 41.06 4.02
488 489 0.603065 GAACCAATGGCCTTGTGACC 59.397 55.000 3.32 0.00 32.61 4.02
489 490 1.620822 AGAACCAATGGCCTTGTGAC 58.379 50.000 3.32 0.32 32.61 3.67
490 491 2.380064 AAGAACCAATGGCCTTGTGA 57.620 45.000 3.32 0.00 32.61 3.58
491 492 3.473923 AAAAGAACCAATGGCCTTGTG 57.526 42.857 3.32 0.00 32.61 3.33
578 580 3.737850 ACGTATACTCTAGAAGGACCGG 58.262 50.000 0.00 0.00 0.00 5.28
617 619 7.413657 CGGAAGTTGGTATACAAACATGTTAGG 60.414 40.741 22.37 9.93 41.58 2.69
690 692 7.291182 AGCACTTCACTGGATATAGGTAGAAAT 59.709 37.037 0.00 0.00 0.00 2.17
727 729 7.519008 GCAAGTTGGTAGATAAGCATGTCATAC 60.519 40.741 4.75 0.00 35.03 2.39
938 940 0.677288 GGCCCCACCAAACACTTAAC 59.323 55.000 0.00 0.00 38.86 2.01
944 946 4.130554 ACACGGCCCCACCAAACA 62.131 61.111 0.00 0.00 39.03 2.83
1017 1019 2.119495 AGACCTTCACCCGCATAGAAT 58.881 47.619 0.00 0.00 0.00 2.40
1156 1158 7.792374 AATCAGCAAATTGTAGATCGTACAT 57.208 32.000 0.00 0.00 0.00 2.29
1157 1159 7.119116 ACAAATCAGCAAATTGTAGATCGTACA 59.881 33.333 0.00 2.15 35.63 2.90
1158 1160 7.464358 ACAAATCAGCAAATTGTAGATCGTAC 58.536 34.615 0.00 0.00 35.63 3.67
1159 1161 7.609760 ACAAATCAGCAAATTGTAGATCGTA 57.390 32.000 0.00 0.00 35.63 3.43
1160 1162 6.500684 ACAAATCAGCAAATTGTAGATCGT 57.499 33.333 0.00 0.00 35.63 3.73
1161 1163 8.337532 TCATACAAATCAGCAAATTGTAGATCG 58.662 33.333 9.29 0.00 41.34 3.69
1238 1241 5.934935 ACATTTTGGTTCTTGTACCTACG 57.065 39.130 0.00 0.00 39.04 3.51
1421 1424 3.192422 TCAATATCCAAAAGCACCCAACG 59.808 43.478 0.00 0.00 0.00 4.10
1664 1667 7.754851 TGGAAAATCTTACCAGGTTTCTTAC 57.245 36.000 0.00 0.00 31.58 2.34
1665 1668 8.950007 AATGGAAAATCTTACCAGGTTTCTTA 57.050 30.769 0.00 0.00 31.58 2.10
1666 1669 7.855784 AATGGAAAATCTTACCAGGTTTCTT 57.144 32.000 0.00 0.00 31.58 2.52
1667 1670 7.855784 AAATGGAAAATCTTACCAGGTTTCT 57.144 32.000 0.00 0.00 31.58 2.52
1668 1671 7.095229 GCAAAATGGAAAATCTTACCAGGTTTC 60.095 37.037 0.00 0.00 31.58 2.78
1669 1672 6.710295 GCAAAATGGAAAATCTTACCAGGTTT 59.290 34.615 0.00 0.00 34.53 3.27
1670 1673 6.183361 TGCAAAATGGAAAATCTTACCAGGTT 60.183 34.615 0.00 0.00 37.12 3.50
1671 1674 5.306678 TGCAAAATGGAAAATCTTACCAGGT 59.693 36.000 0.00 0.00 37.12 4.00
1672 1675 5.792741 TGCAAAATGGAAAATCTTACCAGG 58.207 37.500 0.00 0.00 37.12 4.45
1673 1676 7.910441 AATGCAAAATGGAAAATCTTACCAG 57.090 32.000 0.00 0.00 37.12 4.00
1773 2017 5.316167 ACTGCATAAATTGACTTCACAGGA 58.684 37.500 0.00 0.00 0.00 3.86
1803 2047 2.414806 TGAACATTAAAGTGGCGCGTA 58.585 42.857 8.43 0.00 0.00 4.42
1805 2049 2.542766 ATGAACATTAAAGTGGCGCG 57.457 45.000 0.00 0.00 0.00 6.86
1829 2073 5.779806 ACAATATGAGACTTAACGTGCAC 57.220 39.130 6.82 6.82 0.00 4.57
1923 2167 6.480981 AGCACAAACTTGAAAGAAATCCAATG 59.519 34.615 0.00 0.00 0.00 2.82
1987 2231 7.683463 GCCACTGGTCACTTGTTTAATTAACTT 60.683 37.037 0.00 0.00 37.64 2.66
2062 3695 2.226912 AGACTAGCTCGTGAACACAGAC 59.773 50.000 0.00 0.00 0.00 3.51
2068 3701 5.505985 CCCATAGTAAGACTAGCTCGTGAAC 60.506 48.000 0.00 0.00 33.66 3.18
2069 3702 4.579340 CCCATAGTAAGACTAGCTCGTGAA 59.421 45.833 0.00 0.00 33.66 3.18
2411 4044 8.251026 TGGAATCAGAACACATACAGTACTAAG 58.749 37.037 0.00 0.00 0.00 2.18
2465 4098 3.750130 AGATATTCGATCAGCCAATGCAC 59.250 43.478 0.00 0.00 41.13 4.57
2647 4280 3.967326 CTGACTGGAATCCTACACCCATA 59.033 47.826 0.00 0.00 0.00 2.74
2661 4294 3.138304 CGGAAACACAAATCTGACTGGA 58.862 45.455 0.00 0.00 0.00 3.86
2665 4298 3.606153 CGAACCGGAAACACAAATCTGAC 60.606 47.826 9.46 0.00 0.00 3.51
2717 4350 3.613671 CGCTCAGTTGAGTCAGTCAAGAT 60.614 47.826 10.57 0.00 46.18 2.40
2718 4351 2.287849 CGCTCAGTTGAGTCAGTCAAGA 60.288 50.000 10.57 0.00 46.18 3.02
2749 4382 5.406649 TGTTGTTGTTGTTGAAGATCCAAC 58.593 37.500 7.64 7.64 44.84 3.77
2750 4383 5.651387 TGTTGTTGTTGTTGAAGATCCAA 57.349 34.783 0.00 0.00 0.00 3.53
2751 4384 5.047731 TGTTGTTGTTGTTGTTGAAGATCCA 60.048 36.000 0.00 0.00 0.00 3.41
2752 4385 5.406649 TGTTGTTGTTGTTGTTGAAGATCC 58.593 37.500 0.00 0.00 0.00 3.36
2753 4386 6.364706 TGTTGTTGTTGTTGTTGTTGAAGATC 59.635 34.615 0.00 0.00 0.00 2.75
2754 4387 6.219473 TGTTGTTGTTGTTGTTGTTGAAGAT 58.781 32.000 0.00 0.00 0.00 2.40
2755 4388 5.592054 TGTTGTTGTTGTTGTTGTTGAAGA 58.408 33.333 0.00 0.00 0.00 2.87
2756 4389 5.896922 TGTTGTTGTTGTTGTTGTTGAAG 57.103 34.783 0.00 0.00 0.00 3.02
2757 4390 5.580691 TGTTGTTGTTGTTGTTGTTGTTGAA 59.419 32.000 0.00 0.00 0.00 2.69
3472 5105 4.852134 TGTGCGGTTTCAGTACTACTAA 57.148 40.909 0.00 0.00 0.00 2.24
3645 5278 6.570680 TGGATGAGGTCACAAGGGATATATA 58.429 40.000 0.00 0.00 0.00 0.86
3646 5279 5.415065 TGGATGAGGTCACAAGGGATATAT 58.585 41.667 0.00 0.00 0.00 0.86
4214 5847 0.107654 GGAAAGGTCTCGGGGACATG 60.108 60.000 10.69 0.00 46.16 3.21
4350 5983 2.266554 CATTGAGCTGGACGACTCTTC 58.733 52.381 0.00 0.00 33.92 2.87
4438 6071 2.638480 CCAACTCTTGGTGAAGGACA 57.362 50.000 0.00 0.00 45.93 4.02
5061 6694 4.165565 AGCCAGATTGATTTCATCCTCTCA 59.834 41.667 0.00 0.00 0.00 3.27
5109 6742 6.371595 AGAAAGAGAGAATCACATCTGGTT 57.628 37.500 0.00 0.00 37.82 3.67
5598 7231 3.614092 ACTGTCCATTCCACATCATGTC 58.386 45.455 0.00 0.00 0.00 3.06
5615 7248 3.817647 GCAGTTCTTTGATCCAAGACTGT 59.182 43.478 23.93 8.65 35.32 3.55
5657 7290 6.770785 AGCATCTTGTTAGTACAAACTGGAAA 59.229 34.615 0.00 0.00 43.33 3.13
5682 7315 3.742327 CGCATCTCCTTTATCTTGCTCCA 60.742 47.826 0.00 0.00 0.00 3.86
5939 7572 2.158914 TCATATGCATTGCTGACTCGGT 60.159 45.455 3.54 0.00 0.00 4.69
6108 7742 7.678947 AACTATGGACTCAGAATCAACTTTG 57.321 36.000 0.00 0.00 0.00 2.77
6173 7807 3.057174 CGAGCTTAACTGTTCTCTGGTCT 60.057 47.826 0.00 0.00 0.00 3.85
6343 7977 9.840427 AACTGTTGAATTATTTCAGGTTAATCG 57.160 29.630 0.00 0.00 42.60 3.34
6597 8231 2.486472 ACAATCAGAACTCCCTGCAG 57.514 50.000 6.78 6.78 34.28 4.41
7323 8958 2.743838 TGGAACAAAGGAAGTCGTCCAC 60.744 50.000 7.60 0.00 43.02 4.02
7324 8959 1.487142 TGGAACAAAGGAAGTCGTCCA 59.513 47.619 7.60 0.00 43.02 4.02
7389 9026 2.143122 CGCAGCCTTTAACAGACTCAA 58.857 47.619 0.00 0.00 0.00 3.02
7489 9140 6.803587 ATTTTGGGATGGAGGGAGTATAAT 57.196 37.500 0.00 0.00 0.00 1.28
7491 9142 6.855061 ACTTATTTTGGGATGGAGGGAGTATA 59.145 38.462 0.00 0.00 0.00 1.47
7492 9143 5.676811 ACTTATTTTGGGATGGAGGGAGTAT 59.323 40.000 0.00 0.00 0.00 2.12
7493 9144 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
7494 9145 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
7495 9146 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
7496 9147 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
7497 9148 3.981212 ACACTTATTTTGGGATGGAGGG 58.019 45.455 0.00 0.00 0.00 4.30
7568 9219 4.645588 ACTACTCCCTCCGTCTCAAAATAG 59.354 45.833 0.00 0.00 0.00 1.73
7663 9314 2.557924 TGCCATGCTTGACAACTAAAGG 59.442 45.455 0.22 0.00 0.00 3.11
7664 9315 3.921119 TGCCATGCTTGACAACTAAAG 57.079 42.857 0.22 0.00 0.00 1.85
7673 9329 3.540314 AAACAAAGTTGCCATGCTTGA 57.460 38.095 0.22 0.00 0.00 3.02
7714 9370 4.249661 AGTTGACACAAACGGCAATTTTT 58.750 34.783 0.00 0.00 35.13 1.94
7814 9470 3.846754 GCAAATGGCGCTTCACAC 58.153 55.556 7.64 0.00 0.00 3.82
7840 9496 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
7841 9497 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
7842 9498 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
7843 9499 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
7844 9500 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
7845 9501 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
7846 9502 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
7847 9503 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
7878 9534 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
7879 9535 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
7880 9536 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
7881 9537 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
7882 9538 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
7883 9539 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
7884 9540 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
7885 9541 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
7886 9542 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
7887 9543 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
7888 9544 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
7889 9545 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
7890 9546 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
7891 9547 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
7892 9548 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
7893 9549 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
7894 9550 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
7895 9551 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
7896 9552 8.352201 TGAAATAAATCCAGGAATAAATGCGAG 58.648 33.333 0.00 0.00 0.00 5.03
7897 9553 8.231692 TGAAATAAATCCAGGAATAAATGCGA 57.768 30.769 0.00 0.00 0.00 5.10
7898 9554 8.511465 CTGAAATAAATCCAGGAATAAATGCG 57.489 34.615 0.00 0.00 0.00 4.73
7908 9564 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
7909 9565 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
7910 9566 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
7911 9567 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
7912 9568 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
7913 9569 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
7914 9570 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
7915 9571 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
7916 9572 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
7917 9573 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
7918 9574 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
7919 9575 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
7920 9576 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
7921 9577 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
7922 9578 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
7933 9589 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
7934 9590 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
7935 9591 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
7936 9592 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
7937 9593 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
7938 9594 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
7939 9595 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
7940 9596 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
7941 9597 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
7942 9598 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
7943 9599 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
7944 9600 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
7945 9601 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
7964 9620 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
7965 9621 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
7966 9622 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
7967 9623 1.136984 CTGTAGGCACCTCGTCGTC 59.863 63.158 0.00 0.00 0.00 4.20
7968 9624 1.602888 ACTGTAGGCACCTCGTCGT 60.603 57.895 0.00 0.00 0.00 4.34
7969 9625 1.154016 CACTGTAGGCACCTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
7970 9626 0.109226 GTCACTGTAGGCACCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
7971 9627 0.539901 AGTCACTGTAGGCACCTCGT 60.540 55.000 0.00 0.00 0.00 4.18
7972 9628 0.603569 AAGTCACTGTAGGCACCTCG 59.396 55.000 0.00 0.00 0.00 4.63
7973 9629 1.402984 CGAAGTCACTGTAGGCACCTC 60.403 57.143 0.00 0.00 0.00 3.85
7974 9630 0.603569 CGAAGTCACTGTAGGCACCT 59.396 55.000 0.00 0.00 0.00 4.00
7975 9631 0.317479 ACGAAGTCACTGTAGGCACC 59.683 55.000 0.00 0.00 29.74 5.01
7976 9632 2.486982 TCTACGAAGTCACTGTAGGCAC 59.513 50.000 3.16 0.00 43.93 5.01
7977 9633 2.786777 TCTACGAAGTCACTGTAGGCA 58.213 47.619 3.16 0.00 43.93 4.75
7978 9634 4.373348 AATCTACGAAGTCACTGTAGGC 57.627 45.455 3.16 0.00 43.93 3.93
7979 9635 5.950883 TGAAATCTACGAAGTCACTGTAGG 58.049 41.667 3.16 0.00 43.93 3.18
7980 9636 7.306213 TCTTGAAATCTACGAAGTCACTGTAG 58.694 38.462 0.00 0.00 43.93 2.74
7981 9637 7.210718 TCTTGAAATCTACGAAGTCACTGTA 57.789 36.000 0.00 0.00 43.93 2.74
7982 9638 6.085555 TCTTGAAATCTACGAAGTCACTGT 57.914 37.500 0.00 0.00 43.93 3.55
7983 9639 6.808704 TCATCTTGAAATCTACGAAGTCACTG 59.191 38.462 0.00 0.00 43.93 3.66
7984 9640 6.925211 TCATCTTGAAATCTACGAAGTCACT 58.075 36.000 0.00 0.00 43.93 3.41
7985 9641 7.763172 ATCATCTTGAAATCTACGAAGTCAC 57.237 36.000 0.00 0.00 43.93 3.67
7986 9642 9.468532 CATATCATCTTGAAATCTACGAAGTCA 57.531 33.333 0.00 0.00 43.93 3.41
7987 9643 8.431593 GCATATCATCTTGAAATCTACGAAGTC 58.568 37.037 0.00 0.00 43.93 3.01
7989 9645 7.411264 CGGCATATCATCTTGAAATCTACGAAG 60.411 40.741 0.00 0.00 0.00 3.79
7990 9646 6.366061 CGGCATATCATCTTGAAATCTACGAA 59.634 38.462 0.00 0.00 0.00 3.85
7991 9647 5.863935 CGGCATATCATCTTGAAATCTACGA 59.136 40.000 0.00 0.00 0.00 3.43
7992 9648 6.087518 CGGCATATCATCTTGAAATCTACG 57.912 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.