Multiple sequence alignment - TraesCS6B01G237000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G237000 chr6B 100.000 2513 0 0 1 2513 408685571 408688083 0.000000e+00 4641.0
1 TraesCS6B01G237000 chr6B 98.918 1664 14 2 851 2513 417232059 417233719 0.000000e+00 2970.0
2 TraesCS6B01G237000 chr7A 95.884 1992 41 21 558 2513 5632884 5634870 0.000000e+00 3186.0
3 TraesCS6B01G237000 chr7A 99.159 1664 10 2 851 2513 204164742 204166402 0.000000e+00 2992.0
4 TraesCS6B01G237000 chr7A 88.444 450 26 16 558 994 462962322 462962758 1.030000e-143 520.0
5 TraesCS6B01G237000 chr7A 94.340 106 6 0 452 557 692780436 692780331 2.000000e-36 163.0
6 TraesCS6B01G237000 chr1A 99.099 1664 11 2 851 2513 252511199 252509539 0.000000e+00 2987.0
7 TraesCS6B01G237000 chr1A 92.063 126 6 4 271 396 452747942 452747821 9.240000e-40 174.0
8 TraesCS6B01G237000 chr1A 95.146 103 5 0 450 552 239893918 239893816 2.000000e-36 163.0
9 TraesCS6B01G237000 chr1A 93.182 88 5 1 188 275 590078238 590078152 7.300000e-26 128.0
10 TraesCS6B01G237000 chr3B 95.106 1941 13 16 558 2425 215616245 215614314 0.000000e+00 2983.0
11 TraesCS6B01G237000 chr3B 93.427 1567 66 20 556 2088 780311971 780310408 0.000000e+00 2289.0
12 TraesCS6B01G237000 chr3B 92.371 367 23 5 556 919 780336915 780336551 3.710000e-143 518.0
13 TraesCS6B01G237000 chr3B 93.889 180 10 1 558 736 366143302 366143481 1.150000e-68 270.0
14 TraesCS6B01G237000 chr3B 93.651 126 5 3 271 396 98934623 98934745 4.270000e-43 185.0
15 TraesCS6B01G237000 chr3B 93.519 108 6 1 446 553 277368005 277367899 2.590000e-35 159.0
16 TraesCS6B01G237000 chr3B 92.453 106 7 1 453 557 548846841 548846946 1.560000e-32 150.0
17 TraesCS6B01G237000 chr7B 99.038 1664 12 2 851 2513 263144077 263142417 0.000000e+00 2981.0
18 TraesCS6B01G237000 chr7B 98.798 1664 16 2 851 2513 446172068 446173728 0.000000e+00 2959.0
19 TraesCS6B01G237000 chr7B 92.063 126 5 4 271 396 547475662 547475782 3.320000e-39 172.0
20 TraesCS6B01G237000 chr5B 98.858 1664 15 2 851 2513 513600675 513602335 0.000000e+00 2964.0
21 TraesCS6B01G237000 chr5B 95.050 101 5 0 456 556 288005385 288005285 2.590000e-35 159.0
22 TraesCS6B01G237000 chr5B 95.098 102 4 1 451 552 606109025 606108925 2.590000e-35 159.0
23 TraesCS6B01G237000 chr4B 98.798 1664 16 2 851 2513 142053490 142051830 0.000000e+00 2959.0
24 TraesCS6B01G237000 chr4B 98.798 1664 11 4 851 2513 660454847 660453192 0.000000e+00 2953.0
25 TraesCS6B01G237000 chr4B 91.294 425 17 12 558 962 113965507 113965931 1.690000e-156 562.0
26 TraesCS6B01G237000 chr4A 98.798 1664 15 3 851 2513 35614626 35612967 0.000000e+00 2957.0
27 TraesCS6B01G237000 chr2B 90.302 464 18 12 558 994 309488995 309489458 1.300000e-162 582.0
28 TraesCS6B01G237000 chr2B 94.444 126 4 3 271 396 717346504 717346382 9.180000e-45 191.0
29 TraesCS6B01G237000 chr4D 87.973 449 33 17 558 994 235487923 235488362 6.200000e-141 510.0
30 TraesCS6B01G237000 chr4D 100.000 30 0 0 428 457 446106849 446106820 3.490000e-04 56.5
31 TraesCS6B01G237000 chr6A 96.727 275 8 1 1 275 374419066 374419339 8.190000e-125 457.0
32 TraesCS6B01G237000 chr6A 96.825 126 2 2 271 396 374419594 374419471 2.530000e-50 209.0
33 TraesCS6B01G237000 chr6D 94.182 275 14 2 1 275 264683883 264684155 3.870000e-113 418.0
34 TraesCS6B01G237000 chr6D 96.032 126 3 2 271 396 264684425 264684302 1.180000e-48 204.0
35 TraesCS6B01G237000 chr6D 98.630 73 1 0 385 457 264684205 264684277 2.030000e-26 130.0
36 TraesCS6B01G237000 chr2A 93.651 126 5 3 271 396 277152631 277152509 4.270000e-43 185.0
37 TraesCS6B01G237000 chr2A 92.063 126 7 3 271 396 746249251 746249373 9.240000e-40 174.0
38 TraesCS6B01G237000 chr5A 92.857 126 6 3 271 396 264609679 264609557 1.990000e-41 180.0
39 TraesCS6B01G237000 chr5A 95.349 43 2 0 1 43 264640504 264640546 4.490000e-08 69.4
40 TraesCS6B01G237000 chr1B 96.970 99 2 1 456 554 132274291 132274388 5.560000e-37 165.0
41 TraesCS6B01G237000 chr1B 95.876 97 4 0 456 552 276137657 276137561 9.310000e-35 158.0
42 TraesCS6B01G237000 chr1B 95.000 100 5 0 456 555 486243226 486243127 9.310000e-35 158.0
43 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42709705 42709737 3.490000e-04 56.5
44 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42729502 42729534 3.490000e-04 56.5
45 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42740901 42740933 3.490000e-04 56.5
46 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42741541 42741573 3.490000e-04 56.5
47 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42755770 42755802 3.490000e-04 56.5
48 TraesCS6B01G237000 chrUn 96.970 33 1 0 425 457 42778853 42778885 3.490000e-04 56.5
49 TraesCS6B01G237000 chr5D 96.970 33 1 0 425 457 179134000 179134032 3.490000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G237000 chr6B 408685571 408688083 2512 False 4641 4641 100.000 1 2513 1 chr6B.!!$F1 2512
1 TraesCS6B01G237000 chr6B 417232059 417233719 1660 False 2970 2970 98.918 851 2513 1 chr6B.!!$F2 1662
2 TraesCS6B01G237000 chr7A 5632884 5634870 1986 False 3186 3186 95.884 558 2513 1 chr7A.!!$F1 1955
3 TraesCS6B01G237000 chr7A 204164742 204166402 1660 False 2992 2992 99.159 851 2513 1 chr7A.!!$F2 1662
4 TraesCS6B01G237000 chr1A 252509539 252511199 1660 True 2987 2987 99.099 851 2513 1 chr1A.!!$R2 1662
5 TraesCS6B01G237000 chr3B 215614314 215616245 1931 True 2983 2983 95.106 558 2425 1 chr3B.!!$R1 1867
6 TraesCS6B01G237000 chr3B 780310408 780311971 1563 True 2289 2289 93.427 556 2088 1 chr3B.!!$R3 1532
7 TraesCS6B01G237000 chr7B 263142417 263144077 1660 True 2981 2981 99.038 851 2513 1 chr7B.!!$R1 1662
8 TraesCS6B01G237000 chr7B 446172068 446173728 1660 False 2959 2959 98.798 851 2513 1 chr7B.!!$F1 1662
9 TraesCS6B01G237000 chr5B 513600675 513602335 1660 False 2964 2964 98.858 851 2513 1 chr5B.!!$F1 1662
10 TraesCS6B01G237000 chr4B 142051830 142053490 1660 True 2959 2959 98.798 851 2513 1 chr4B.!!$R1 1662
11 TraesCS6B01G237000 chr4B 660453192 660454847 1655 True 2953 2953 98.798 851 2513 1 chr4B.!!$R2 1662
12 TraesCS6B01G237000 chr4A 35612967 35614626 1659 True 2957 2957 98.798 851 2513 1 chr4A.!!$R1 1662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.033796 CATGCATGGTTCCCCACTCT 60.034 55.0 19.4 0.0 45.65 3.24 F
224 225 0.035056 CATGGTTCCCCACTCTGGTC 60.035 60.0 0.0 0.0 45.65 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1621 0.392193 CAGAGAGTCCAATTGGCGCT 60.392 55.0 20.33 19.82 34.44 5.92 R
1642 1752 1.020861 CGTGCCAATAGCTGAGCACA 61.021 55.0 23.18 0.00 45.27 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.967332 CATCAAAATGCCCTTTGTCCT 57.033 42.857 7.30 0.00 37.52 3.85
22 23 4.276058 CATCAAAATGCCCTTTGTCCTT 57.724 40.909 7.30 0.00 37.52 3.36
23 24 4.644498 CATCAAAATGCCCTTTGTCCTTT 58.356 39.130 7.30 0.00 37.52 3.11
24 25 4.070630 TCAAAATGCCCTTTGTCCTTTG 57.929 40.909 7.30 0.00 37.52 2.77
25 26 3.140623 CAAAATGCCCTTTGTCCTTTGG 58.859 45.455 0.57 0.00 32.64 3.28
26 27 2.397044 AATGCCCTTTGTCCTTTGGA 57.603 45.000 0.00 0.00 0.00 3.53
27 28 1.928868 ATGCCCTTTGTCCTTTGGAG 58.071 50.000 0.00 0.00 29.39 3.86
28 29 0.850100 TGCCCTTTGTCCTTTGGAGA 59.150 50.000 0.00 0.00 29.39 3.71
29 30 1.216678 TGCCCTTTGTCCTTTGGAGAA 59.783 47.619 0.00 0.00 33.04 2.87
30 31 1.613925 GCCCTTTGTCCTTTGGAGAAC 59.386 52.381 0.00 0.00 34.67 3.01
31 32 2.944129 CCCTTTGTCCTTTGGAGAACA 58.056 47.619 0.00 0.00 34.67 3.18
32 33 2.623416 CCCTTTGTCCTTTGGAGAACAC 59.377 50.000 0.00 0.00 34.67 3.32
33 34 3.287222 CCTTTGTCCTTTGGAGAACACA 58.713 45.455 0.00 0.00 34.67 3.72
34 35 3.891366 CCTTTGTCCTTTGGAGAACACAT 59.109 43.478 0.00 0.00 34.67 3.21
35 36 4.022849 CCTTTGTCCTTTGGAGAACACATC 60.023 45.833 0.00 0.00 34.67 3.06
36 37 4.437682 TTGTCCTTTGGAGAACACATCT 57.562 40.909 0.00 0.00 42.61 2.90
62 63 9.745880 TCTAATAATTTACTCATGTCGTTCTCC 57.254 33.333 0.00 0.00 0.00 3.71
63 64 9.529325 CTAATAATTTACTCATGTCGTTCTCCA 57.471 33.333 0.00 0.00 0.00 3.86
64 65 7.772332 ATAATTTACTCATGTCGTTCTCCAC 57.228 36.000 0.00 0.00 0.00 4.02
65 66 3.587797 TTACTCATGTCGTTCTCCACC 57.412 47.619 0.00 0.00 0.00 4.61
66 67 0.608640 ACTCATGTCGTTCTCCACCC 59.391 55.000 0.00 0.00 0.00 4.61
67 68 0.108138 CTCATGTCGTTCTCCACCCC 60.108 60.000 0.00 0.00 0.00 4.95
68 69 0.834261 TCATGTCGTTCTCCACCCCA 60.834 55.000 0.00 0.00 0.00 4.96
69 70 0.253044 CATGTCGTTCTCCACCCCAT 59.747 55.000 0.00 0.00 0.00 4.00
70 71 0.253044 ATGTCGTTCTCCACCCCATG 59.747 55.000 0.00 0.00 0.00 3.66
71 72 1.125093 TGTCGTTCTCCACCCCATGT 61.125 55.000 0.00 0.00 0.00 3.21
72 73 0.899720 GTCGTTCTCCACCCCATGTA 59.100 55.000 0.00 0.00 0.00 2.29
73 74 1.485066 GTCGTTCTCCACCCCATGTAT 59.515 52.381 0.00 0.00 0.00 2.29
74 75 1.760613 TCGTTCTCCACCCCATGTATC 59.239 52.381 0.00 0.00 0.00 2.24
75 76 1.762957 CGTTCTCCACCCCATGTATCT 59.237 52.381 0.00 0.00 0.00 1.98
76 77 2.224066 CGTTCTCCACCCCATGTATCTC 60.224 54.545 0.00 0.00 0.00 2.75
77 78 2.103153 TCTCCACCCCATGTATCTCC 57.897 55.000 0.00 0.00 0.00 3.71
78 79 1.293763 TCTCCACCCCATGTATCTCCA 59.706 52.381 0.00 0.00 0.00 3.86
79 80 2.126882 CTCCACCCCATGTATCTCCAA 58.873 52.381 0.00 0.00 0.00 3.53
80 81 2.105477 CTCCACCCCATGTATCTCCAAG 59.895 54.545 0.00 0.00 0.00 3.61
81 82 2.126882 CCACCCCATGTATCTCCAAGA 58.873 52.381 0.00 0.00 0.00 3.02
82 83 2.713167 CCACCCCATGTATCTCCAAGAT 59.287 50.000 0.00 0.00 38.70 2.40
83 84 3.139025 CCACCCCATGTATCTCCAAGATT 59.861 47.826 0.00 0.00 36.20 2.40
84 85 4.350816 CCACCCCATGTATCTCCAAGATTA 59.649 45.833 0.00 0.00 36.20 1.75
85 86 5.014544 CCACCCCATGTATCTCCAAGATTAT 59.985 44.000 0.00 0.00 36.20 1.28
86 87 6.467775 CCACCCCATGTATCTCCAAGATTATT 60.468 42.308 0.00 0.00 36.20 1.40
87 88 7.006509 CACCCCATGTATCTCCAAGATTATTT 58.993 38.462 0.00 0.00 36.20 1.40
88 89 7.506938 CACCCCATGTATCTCCAAGATTATTTT 59.493 37.037 0.00 0.00 36.20 1.82
89 90 7.725844 ACCCCATGTATCTCCAAGATTATTTTC 59.274 37.037 0.00 0.00 36.20 2.29
90 91 7.946776 CCCCATGTATCTCCAAGATTATTTTCT 59.053 37.037 0.00 0.00 36.20 2.52
91 92 9.359653 CCCATGTATCTCCAAGATTATTTTCTT 57.640 33.333 0.00 0.00 36.20 2.52
100 101 9.933723 CTCCAAGATTATTTTCTTCCATTTTGT 57.066 29.630 0.00 0.00 33.69 2.83
101 102 9.709495 TCCAAGATTATTTTCTTCCATTTTGTG 57.291 29.630 0.00 0.00 33.69 3.33
102 103 9.709495 CCAAGATTATTTTCTTCCATTTTGTGA 57.291 29.630 0.00 0.00 33.69 3.58
106 107 9.874205 GATTATTTTCTTCCATTTTGTGATCCA 57.126 29.630 0.00 0.00 0.00 3.41
108 109 9.709495 TTATTTTCTTCCATTTTGTGATCCAAG 57.291 29.630 0.00 0.00 33.75 3.61
109 110 6.975196 TTTCTTCCATTTTGTGATCCAAGA 57.025 33.333 0.00 0.00 33.75 3.02
110 111 6.975196 TTCTTCCATTTTGTGATCCAAGAA 57.025 33.333 0.00 0.00 33.75 2.52
111 112 6.975196 TCTTCCATTTTGTGATCCAAGAAA 57.025 33.333 0.00 0.00 33.75 2.52
112 113 7.358770 TCTTCCATTTTGTGATCCAAGAAAA 57.641 32.000 0.00 0.00 33.75 2.29
113 114 7.790027 TCTTCCATTTTGTGATCCAAGAAAAA 58.210 30.769 0.00 0.00 33.75 1.94
149 150 9.479549 AAAAATGTCCTGTCCATCTATACAATT 57.520 29.630 0.00 0.00 0.00 2.32
150 151 9.479549 AAAATGTCCTGTCCATCTATACAATTT 57.520 29.630 0.00 0.00 0.00 1.82
151 152 9.479549 AAATGTCCTGTCCATCTATACAATTTT 57.520 29.630 0.00 0.00 0.00 1.82
152 153 8.682936 ATGTCCTGTCCATCTATACAATTTTC 57.317 34.615 0.00 0.00 0.00 2.29
153 154 7.861629 TGTCCTGTCCATCTATACAATTTTCT 58.138 34.615 0.00 0.00 0.00 2.52
154 155 8.328758 TGTCCTGTCCATCTATACAATTTTCTT 58.671 33.333 0.00 0.00 0.00 2.52
155 156 9.832445 GTCCTGTCCATCTATACAATTTTCTTA 57.168 33.333 0.00 0.00 0.00 2.10
167 168 6.843069 ACAATTTTCTTAACAACATGTGCC 57.157 33.333 0.00 0.00 0.00 5.01
168 169 6.344500 ACAATTTTCTTAACAACATGTGCCA 58.656 32.000 0.00 0.00 0.00 4.92
169 170 6.991531 ACAATTTTCTTAACAACATGTGCCAT 59.008 30.769 0.00 0.00 0.00 4.40
170 171 7.041916 ACAATTTTCTTAACAACATGTGCCATG 60.042 33.333 0.00 12.06 0.00 3.66
171 172 5.528043 TTTCTTAACAACATGTGCCATGT 57.472 34.783 13.17 13.17 0.00 3.21
172 173 5.528043 TTCTTAACAACATGTGCCATGTT 57.472 34.783 20.95 20.95 42.38 2.71
173 174 5.528043 TCTTAACAACATGTGCCATGTTT 57.472 34.783 22.94 15.69 39.94 2.83
174 175 5.288015 TCTTAACAACATGTGCCATGTTTG 58.712 37.500 22.94 20.04 39.94 2.93
175 176 3.540314 AACAACATGTGCCATGTTTGT 57.460 38.095 22.94 20.47 39.94 2.83
176 177 3.540314 ACAACATGTGCCATGTTTGTT 57.460 38.095 22.94 12.53 39.94 2.83
177 178 3.456280 ACAACATGTGCCATGTTTGTTC 58.544 40.909 22.94 0.00 39.94 3.18
178 179 3.118847 ACAACATGTGCCATGTTTGTTCA 60.119 39.130 22.94 0.00 39.94 3.18
179 180 3.815856 ACATGTGCCATGTTTGTTCAA 57.184 38.095 13.17 0.00 0.00 2.69
180 181 4.339872 ACATGTGCCATGTTTGTTCAAT 57.660 36.364 13.17 0.00 0.00 2.57
181 182 4.309099 ACATGTGCCATGTTTGTTCAATC 58.691 39.130 13.17 0.00 0.00 2.67
182 183 4.039488 ACATGTGCCATGTTTGTTCAATCT 59.961 37.500 13.17 0.00 0.00 2.40
183 184 4.669206 TGTGCCATGTTTGTTCAATCTT 57.331 36.364 0.00 0.00 0.00 2.40
184 185 4.619973 TGTGCCATGTTTGTTCAATCTTC 58.380 39.130 0.00 0.00 0.00 2.87
185 186 4.341806 TGTGCCATGTTTGTTCAATCTTCT 59.658 37.500 0.00 0.00 0.00 2.85
186 187 5.163426 TGTGCCATGTTTGTTCAATCTTCTT 60.163 36.000 0.00 0.00 0.00 2.52
187 188 5.754890 GTGCCATGTTTGTTCAATCTTCTTT 59.245 36.000 0.00 0.00 0.00 2.52
188 189 6.258507 GTGCCATGTTTGTTCAATCTTCTTTT 59.741 34.615 0.00 0.00 0.00 2.27
189 190 6.479660 TGCCATGTTTGTTCAATCTTCTTTTC 59.520 34.615 0.00 0.00 0.00 2.29
190 191 6.479660 GCCATGTTTGTTCAATCTTCTTTTCA 59.520 34.615 0.00 0.00 0.00 2.69
191 192 7.517259 GCCATGTTTGTTCAATCTTCTTTTCAC 60.517 37.037 0.00 0.00 0.00 3.18
192 193 7.492020 CCATGTTTGTTCAATCTTCTTTTCACA 59.508 33.333 0.00 0.00 0.00 3.58
193 194 8.871862 CATGTTTGTTCAATCTTCTTTTCACAA 58.128 29.630 0.00 0.00 0.00 3.33
194 195 8.824159 TGTTTGTTCAATCTTCTTTTCACAAA 57.176 26.923 0.00 0.00 32.02 2.83
195 196 9.265901 TGTTTGTTCAATCTTCTTTTCACAAAA 57.734 25.926 0.00 0.00 35.32 2.44
198 199 9.434420 TTGTTCAATCTTCTTTTCACAAAATGT 57.566 25.926 0.00 0.00 0.00 2.71
217 218 3.619938 CCATGCATGGTTCCCCAC 58.380 61.111 33.68 0.00 45.65 4.61
218 219 1.000739 CCATGCATGGTTCCCCACT 59.999 57.895 33.68 0.00 45.65 4.00
219 220 1.039233 CCATGCATGGTTCCCCACTC 61.039 60.000 33.68 0.00 45.65 3.51
220 221 0.033796 CATGCATGGTTCCCCACTCT 60.034 55.000 19.40 0.00 45.65 3.24
221 222 0.033796 ATGCATGGTTCCCCACTCTG 60.034 55.000 0.00 0.00 45.65 3.35
222 223 1.379044 GCATGGTTCCCCACTCTGG 60.379 63.158 0.00 0.00 45.65 3.86
223 224 2.078452 CATGGTTCCCCACTCTGGT 58.922 57.895 0.00 0.00 45.65 4.00
224 225 0.035056 CATGGTTCCCCACTCTGGTC 60.035 60.000 0.00 0.00 45.65 4.02
225 226 0.475632 ATGGTTCCCCACTCTGGTCA 60.476 55.000 0.00 0.00 45.65 4.02
226 227 0.475632 TGGTTCCCCACTCTGGTCAT 60.476 55.000 0.00 0.00 35.17 3.06
227 228 0.698818 GGTTCCCCACTCTGGTCATT 59.301 55.000 0.00 0.00 35.17 2.57
228 229 1.340114 GGTTCCCCACTCTGGTCATTC 60.340 57.143 0.00 0.00 35.17 2.67
229 230 1.351017 GTTCCCCACTCTGGTCATTCA 59.649 52.381 0.00 0.00 35.17 2.57
230 231 0.984230 TCCCCACTCTGGTCATTCAC 59.016 55.000 0.00 0.00 35.17 3.18
231 232 0.692476 CCCCACTCTGGTCATTCACA 59.308 55.000 0.00 0.00 35.17 3.58
232 233 1.283029 CCCCACTCTGGTCATTCACAT 59.717 52.381 0.00 0.00 35.17 3.21
233 234 2.362736 CCCACTCTGGTCATTCACATG 58.637 52.381 0.00 0.00 35.17 3.21
234 235 2.026915 CCCACTCTGGTCATTCACATGA 60.027 50.000 0.00 0.00 35.17 3.07
255 256 5.368256 GACATGTGTCATCTTTGCTCTTT 57.632 39.130 1.15 0.00 44.18 2.52
256 257 5.766222 GACATGTGTCATCTTTGCTCTTTT 58.234 37.500 1.15 0.00 44.18 2.27
257 258 5.526115 ACATGTGTCATCTTTGCTCTTTTG 58.474 37.500 0.00 0.00 0.00 2.44
258 259 5.068198 ACATGTGTCATCTTTGCTCTTTTGT 59.932 36.000 0.00 0.00 0.00 2.83
259 260 6.262944 ACATGTGTCATCTTTGCTCTTTTGTA 59.737 34.615 0.00 0.00 0.00 2.41
260 261 6.304356 TGTGTCATCTTTGCTCTTTTGTAG 57.696 37.500 0.00 0.00 0.00 2.74
261 262 5.822519 TGTGTCATCTTTGCTCTTTTGTAGT 59.177 36.000 0.00 0.00 0.00 2.73
262 263 6.989759 TGTGTCATCTTTGCTCTTTTGTAGTA 59.010 34.615 0.00 0.00 0.00 1.82
263 264 7.042051 TGTGTCATCTTTGCTCTTTTGTAGTAC 60.042 37.037 0.00 0.00 0.00 2.73
264 265 7.171678 GTGTCATCTTTGCTCTTTTGTAGTACT 59.828 37.037 0.00 0.00 0.00 2.73
265 266 7.385205 TGTCATCTTTGCTCTTTTGTAGTACTC 59.615 37.037 0.00 0.00 0.00 2.59
266 267 6.874134 TCATCTTTGCTCTTTTGTAGTACTCC 59.126 38.462 0.00 0.00 0.00 3.85
267 268 5.548406 TCTTTGCTCTTTTGTAGTACTCCC 58.452 41.667 0.00 0.00 0.00 4.30
268 269 5.307196 TCTTTGCTCTTTTGTAGTACTCCCT 59.693 40.000 0.00 0.00 0.00 4.20
269 270 4.803098 TGCTCTTTTGTAGTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
270 271 4.417437 TGCTCTTTTGTAGTACTCCCTCT 58.583 43.478 0.00 0.00 0.00 3.69
271 272 4.220821 TGCTCTTTTGTAGTACTCCCTCTG 59.779 45.833 0.00 0.00 0.00 3.35
272 273 4.221041 GCTCTTTTGTAGTACTCCCTCTGT 59.779 45.833 0.00 0.00 0.00 3.41
273 274 5.418209 GCTCTTTTGTAGTACTCCCTCTGTA 59.582 44.000 0.00 0.00 0.00 2.74
274 275 6.071503 GCTCTTTTGTAGTACTCCCTCTGTAA 60.072 42.308 0.00 0.00 0.00 2.41
275 276 7.363968 GCTCTTTTGTAGTACTCCCTCTGTAAT 60.364 40.741 0.00 0.00 0.00 1.89
276 277 8.431910 TCTTTTGTAGTACTCCCTCTGTAATT 57.568 34.615 0.00 0.00 0.00 1.40
277 278 8.311836 TCTTTTGTAGTACTCCCTCTGTAATTG 58.688 37.037 0.00 0.00 0.00 2.32
278 279 7.786046 TTTGTAGTACTCCCTCTGTAATTGA 57.214 36.000 0.00 0.00 0.00 2.57
279 280 7.973048 TTGTAGTACTCCCTCTGTAATTGAT 57.027 36.000 0.00 0.00 0.00 2.57
280 281 7.973048 TGTAGTACTCCCTCTGTAATTGATT 57.027 36.000 0.00 0.00 0.00 2.57
281 282 7.782049 TGTAGTACTCCCTCTGTAATTGATTG 58.218 38.462 0.00 0.00 0.00 2.67
282 283 7.618117 TGTAGTACTCCCTCTGTAATTGATTGA 59.382 37.037 0.00 0.00 0.00 2.57
283 284 7.496346 AGTACTCCCTCTGTAATTGATTGAA 57.504 36.000 0.00 0.00 0.00 2.69
284 285 8.095452 AGTACTCCCTCTGTAATTGATTGAAT 57.905 34.615 0.00 0.00 0.00 2.57
285 286 7.989741 AGTACTCCCTCTGTAATTGATTGAATG 59.010 37.037 0.00 0.00 0.00 2.67
286 287 6.962182 ACTCCCTCTGTAATTGATTGAATGA 58.038 36.000 0.00 0.00 0.00 2.57
287 288 7.052873 ACTCCCTCTGTAATTGATTGAATGAG 58.947 38.462 0.00 0.00 0.00 2.90
288 289 6.962182 TCCCTCTGTAATTGATTGAATGAGT 58.038 36.000 0.00 0.00 0.00 3.41
289 290 7.405292 TCCCTCTGTAATTGATTGAATGAGTT 58.595 34.615 0.00 0.00 0.00 3.01
290 291 7.890127 TCCCTCTGTAATTGATTGAATGAGTTT 59.110 33.333 0.00 0.00 0.00 2.66
291 292 8.526147 CCCTCTGTAATTGATTGAATGAGTTTT 58.474 33.333 0.00 0.00 0.00 2.43
292 293 9.565213 CCTCTGTAATTGATTGAATGAGTTTTC 57.435 33.333 0.00 0.00 0.00 2.29
300 301 8.422973 TTGATTGAATGAGTTTTCTTTTGTGG 57.577 30.769 0.00 0.00 0.00 4.17
301 302 7.555087 TGATTGAATGAGTTTTCTTTTGTGGT 58.445 30.769 0.00 0.00 0.00 4.16
302 303 8.040132 TGATTGAATGAGTTTTCTTTTGTGGTT 58.960 29.630 0.00 0.00 0.00 3.67
303 304 8.791327 ATTGAATGAGTTTTCTTTTGTGGTTT 57.209 26.923 0.00 0.00 0.00 3.27
304 305 7.826260 TGAATGAGTTTTCTTTTGTGGTTTC 57.174 32.000 0.00 0.00 0.00 2.78
305 306 7.382110 TGAATGAGTTTTCTTTTGTGGTTTCA 58.618 30.769 0.00 0.00 0.00 2.69
306 307 8.040132 TGAATGAGTTTTCTTTTGTGGTTTCAT 58.960 29.630 0.00 0.00 0.00 2.57
307 308 9.528018 GAATGAGTTTTCTTTTGTGGTTTCATA 57.472 29.630 0.00 0.00 0.00 2.15
309 310 8.870160 TGAGTTTTCTTTTGTGGTTTCATATG 57.130 30.769 0.00 0.00 0.00 1.78
310 311 8.690884 TGAGTTTTCTTTTGTGGTTTCATATGA 58.309 29.630 0.00 0.00 0.00 2.15
311 312 9.696917 GAGTTTTCTTTTGTGGTTTCATATGAT 57.303 29.630 6.17 0.00 0.00 2.45
312 313 9.480053 AGTTTTCTTTTGTGGTTTCATATGATG 57.520 29.630 6.17 0.00 0.00 3.07
313 314 9.474920 GTTTTCTTTTGTGGTTTCATATGATGA 57.525 29.630 6.17 0.00 37.55 2.92
314 315 9.695526 TTTTCTTTTGTGGTTTCATATGATGAG 57.304 29.630 6.17 0.00 40.94 2.90
315 316 8.408043 TTCTTTTGTGGTTTCATATGATGAGT 57.592 30.769 6.17 0.00 40.94 3.41
316 317 8.408043 TCTTTTGTGGTTTCATATGATGAGTT 57.592 30.769 6.17 0.00 40.94 3.01
317 318 8.859090 TCTTTTGTGGTTTCATATGATGAGTTT 58.141 29.630 6.17 0.00 40.94 2.66
318 319 8.815141 TTTTGTGGTTTCATATGATGAGTTTG 57.185 30.769 6.17 0.00 40.94 2.93
319 320 7.523293 TTGTGGTTTCATATGATGAGTTTGT 57.477 32.000 6.17 0.00 40.94 2.83
320 321 7.144722 TGTGGTTTCATATGATGAGTTTGTC 57.855 36.000 6.17 0.00 40.94 3.18
321 322 6.714356 TGTGGTTTCATATGATGAGTTTGTCA 59.286 34.615 6.17 0.00 40.94 3.58
322 323 7.230309 TGTGGTTTCATATGATGAGTTTGTCAA 59.770 33.333 6.17 0.00 40.94 3.18
323 324 8.246180 GTGGTTTCATATGATGAGTTTGTCAAT 58.754 33.333 6.17 0.00 40.94 2.57
324 325 9.460019 TGGTTTCATATGATGAGTTTGTCAATA 57.540 29.630 6.17 0.00 40.94 1.90
329 330 9.498176 TCATATGATGAGTTTGTCAATATCAGG 57.502 33.333 0.00 0.00 39.19 3.86
330 331 9.498176 CATATGATGAGTTTGTCAATATCAGGA 57.502 33.333 0.00 0.00 39.19 3.86
332 333 8.991783 ATGATGAGTTTGTCAATATCAGGATT 57.008 30.769 6.44 0.00 39.19 3.01
334 335 9.551734 TGATGAGTTTGTCAATATCAGGATTAG 57.448 33.333 6.44 0.00 39.19 1.73
335 336 8.915057 ATGAGTTTGTCAATATCAGGATTAGG 57.085 34.615 6.44 0.00 39.19 2.69
336 337 7.861629 TGAGTTTGTCAATATCAGGATTAGGT 58.138 34.615 0.00 0.00 29.64 3.08
337 338 8.988060 TGAGTTTGTCAATATCAGGATTAGGTA 58.012 33.333 0.00 0.00 29.64 3.08
342 343 8.079211 TGTCAATATCAGGATTAGGTATAGGC 57.921 38.462 0.00 0.00 0.00 3.93
343 344 7.678171 TGTCAATATCAGGATTAGGTATAGGCA 59.322 37.037 0.00 0.00 0.00 4.75
344 345 8.709308 GTCAATATCAGGATTAGGTATAGGCAT 58.291 37.037 0.00 0.00 0.00 4.40
345 346 8.708378 TCAATATCAGGATTAGGTATAGGCATG 58.292 37.037 0.00 0.00 0.00 4.06
346 347 4.826274 TCAGGATTAGGTATAGGCATGC 57.174 45.455 9.90 9.90 0.00 4.06
347 348 3.195610 TCAGGATTAGGTATAGGCATGCG 59.804 47.826 12.44 0.00 0.00 4.73
348 349 2.501723 AGGATTAGGTATAGGCATGCGG 59.498 50.000 12.44 0.00 0.00 5.69
349 350 2.236395 GGATTAGGTATAGGCATGCGGT 59.764 50.000 12.44 3.79 0.00 5.68
350 351 3.449737 GGATTAGGTATAGGCATGCGGTA 59.550 47.826 12.44 6.22 0.00 4.02
351 352 4.101119 GGATTAGGTATAGGCATGCGGTAT 59.899 45.833 12.44 13.32 0.00 2.73
352 353 5.396436 GGATTAGGTATAGGCATGCGGTATT 60.396 44.000 12.44 0.00 0.00 1.89
353 354 6.183360 GGATTAGGTATAGGCATGCGGTATTA 60.183 42.308 12.44 0.00 0.00 0.98
354 355 4.737855 AGGTATAGGCATGCGGTATTAG 57.262 45.455 12.44 0.00 0.00 1.73
355 356 3.451178 AGGTATAGGCATGCGGTATTAGG 59.549 47.826 12.44 0.00 0.00 2.69
356 357 3.197116 GGTATAGGCATGCGGTATTAGGT 59.803 47.826 12.44 0.00 0.00 3.08
357 358 4.403432 GGTATAGGCATGCGGTATTAGGTA 59.597 45.833 12.44 0.00 0.00 3.08
358 359 5.070047 GGTATAGGCATGCGGTATTAGGTAT 59.930 44.000 12.44 0.46 0.00 2.73
359 360 3.611766 AGGCATGCGGTATTAGGTATC 57.388 47.619 12.44 0.00 0.00 2.24
360 361 2.903784 AGGCATGCGGTATTAGGTATCA 59.096 45.455 12.44 0.00 0.00 2.15
361 362 3.000727 GGCATGCGGTATTAGGTATCAC 58.999 50.000 12.44 0.00 0.00 3.06
362 363 3.000727 GCATGCGGTATTAGGTATCACC 58.999 50.000 0.00 0.00 38.99 4.02
379 380 8.863872 GGTATCACCTGCTATTAAATAACCAT 57.136 34.615 0.00 0.00 34.73 3.55
380 381 9.297037 GGTATCACCTGCTATTAAATAACCATT 57.703 33.333 0.00 0.00 34.73 3.16
382 383 8.995027 ATCACCTGCTATTAAATAACCATTCA 57.005 30.769 0.00 0.00 0.00 2.57
383 384 8.995027 TCACCTGCTATTAAATAACCATTCAT 57.005 30.769 0.00 0.00 0.00 2.57
384 385 8.849168 TCACCTGCTATTAAATAACCATTCATG 58.151 33.333 0.00 0.00 0.00 3.07
385 386 8.632679 CACCTGCTATTAAATAACCATTCATGT 58.367 33.333 0.00 0.00 0.00 3.21
386 387 8.632679 ACCTGCTATTAAATAACCATTCATGTG 58.367 33.333 0.00 0.00 0.00 3.21
387 388 8.849168 CCTGCTATTAAATAACCATTCATGTGA 58.151 33.333 0.00 0.00 0.00 3.58
396 397 9.754382 AAATAACCATTCATGTGATCTAAATGC 57.246 29.630 0.00 0.00 0.00 3.56
397 398 8.701908 ATAACCATTCATGTGATCTAAATGCT 57.298 30.769 0.00 0.00 0.00 3.79
398 399 6.630444 ACCATTCATGTGATCTAAATGCTC 57.370 37.500 0.00 0.00 0.00 4.26
399 400 6.363065 ACCATTCATGTGATCTAAATGCTCT 58.637 36.000 0.00 0.00 0.00 4.09
400 401 6.832384 ACCATTCATGTGATCTAAATGCTCTT 59.168 34.615 0.00 0.00 0.00 2.85
401 402 7.994911 ACCATTCATGTGATCTAAATGCTCTTA 59.005 33.333 0.00 0.00 0.00 2.10
402 403 9.011095 CCATTCATGTGATCTAAATGCTCTTAT 57.989 33.333 0.00 0.00 0.00 1.73
418 419 9.950496 AATGCTCTTATATTACATAACAGAGGG 57.050 33.333 0.00 0.00 30.91 4.30
419 420 8.721133 TGCTCTTATATTACATAACAGAGGGA 57.279 34.615 0.00 0.00 30.91 4.20
420 421 8.807118 TGCTCTTATATTACATAACAGAGGGAG 58.193 37.037 0.00 0.00 30.91 4.30
421 422 8.808092 GCTCTTATATTACATAACAGAGGGAGT 58.192 37.037 0.00 0.00 30.91 3.85
435 436 8.644374 AACAGAGGGAGTATATAATCTCTGAC 57.356 38.462 24.66 11.56 46.42 3.51
436 437 7.760607 ACAGAGGGAGTATATAATCTCTGACA 58.239 38.462 24.66 0.00 46.42 3.58
437 438 8.397957 ACAGAGGGAGTATATAATCTCTGACAT 58.602 37.037 24.66 9.34 46.42 3.06
438 439 9.253832 CAGAGGGAGTATATAATCTCTGACATT 57.746 37.037 17.02 0.00 46.42 2.71
439 440 9.836179 AGAGGGAGTATATAATCTCTGACATTT 57.164 33.333 17.02 0.00 30.18 2.32
440 441 9.868277 GAGGGAGTATATAATCTCTGACATTTG 57.132 37.037 17.02 0.00 30.18 2.32
441 442 8.317679 AGGGAGTATATAATCTCTGACATTTGC 58.682 37.037 11.71 0.00 28.66 3.68
442 443 7.550906 GGGAGTATATAATCTCTGACATTTGCC 59.449 40.741 9.85 0.00 0.00 4.52
443 444 8.097038 GGAGTATATAATCTCTGACATTTGCCA 58.903 37.037 9.85 0.00 0.00 4.92
444 445 9.494271 GAGTATATAATCTCTGACATTTGCCAA 57.506 33.333 2.94 0.00 0.00 4.52
445 446 9.851686 AGTATATAATCTCTGACATTTGCCAAA 57.148 29.630 0.00 0.00 0.00 3.28
448 449 9.976511 ATATAATCTCTGACATTTGCCAAATTG 57.023 29.630 0.00 0.00 0.00 2.32
449 450 5.988310 ATCTCTGACATTTGCCAAATTGA 57.012 34.783 0.00 0.00 0.00 2.57
450 451 5.988310 TCTCTGACATTTGCCAAATTGAT 57.012 34.783 0.00 0.00 0.00 2.57
451 452 5.716094 TCTCTGACATTTGCCAAATTGATG 58.284 37.500 0.00 0.00 0.00 3.07
452 453 5.477637 TCTCTGACATTTGCCAAATTGATGA 59.522 36.000 0.00 0.00 0.00 2.92
453 454 6.015265 TCTCTGACATTTGCCAAATTGATGAA 60.015 34.615 0.00 0.00 0.00 2.57
454 455 6.160684 TCTGACATTTGCCAAATTGATGAAG 58.839 36.000 0.00 0.00 0.00 3.02
455 456 5.856156 TGACATTTGCCAAATTGATGAAGT 58.144 33.333 0.00 0.00 0.00 3.01
456 457 6.990798 TGACATTTGCCAAATTGATGAAGTA 58.009 32.000 0.00 0.00 0.00 2.24
457 458 6.867816 TGACATTTGCCAAATTGATGAAGTAC 59.132 34.615 0.00 0.00 0.00 2.73
458 459 6.996509 ACATTTGCCAAATTGATGAAGTACT 58.003 32.000 0.00 0.00 0.00 2.73
459 460 7.092716 ACATTTGCCAAATTGATGAAGTACTC 58.907 34.615 0.00 0.00 0.00 2.59
460 461 5.643379 TTGCCAAATTGATGAAGTACTCC 57.357 39.130 0.00 0.00 0.00 3.85
461 462 4.016444 TGCCAAATTGATGAAGTACTCCC 58.984 43.478 0.00 0.00 0.00 4.30
462 463 4.263905 TGCCAAATTGATGAAGTACTCCCT 60.264 41.667 0.00 0.00 0.00 4.20
463 464 4.336713 GCCAAATTGATGAAGTACTCCCTC 59.663 45.833 0.00 0.00 0.00 4.30
464 465 5.500234 CCAAATTGATGAAGTACTCCCTCA 58.500 41.667 0.00 0.00 0.00 3.86
465 466 5.945784 CCAAATTGATGAAGTACTCCCTCAA 59.054 40.000 2.49 2.49 32.39 3.02
466 467 6.604795 CCAAATTGATGAAGTACTCCCTCAAT 59.395 38.462 6.77 6.77 37.17 2.57
467 468 7.201767 CCAAATTGATGAAGTACTCCCTCAATC 60.202 40.741 11.89 6.04 35.74 2.67
468 469 5.359194 TTGATGAAGTACTCCCTCAATCC 57.641 43.478 0.00 0.00 0.00 3.01
469 470 3.711704 TGATGAAGTACTCCCTCAATCCC 59.288 47.826 0.00 0.00 0.00 3.85
470 471 3.199442 TGAAGTACTCCCTCAATCCCA 57.801 47.619 0.00 0.00 0.00 4.37
471 472 3.526899 TGAAGTACTCCCTCAATCCCAA 58.473 45.455 0.00 0.00 0.00 4.12
472 473 3.913799 TGAAGTACTCCCTCAATCCCAAA 59.086 43.478 0.00 0.00 0.00 3.28
473 474 4.352595 TGAAGTACTCCCTCAATCCCAAAA 59.647 41.667 0.00 0.00 0.00 2.44
474 475 5.015178 TGAAGTACTCCCTCAATCCCAAAAT 59.985 40.000 0.00 0.00 0.00 1.82
475 476 6.216662 TGAAGTACTCCCTCAATCCCAAAATA 59.783 38.462 0.00 0.00 0.00 1.40
476 477 6.652205 AGTACTCCCTCAATCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
477 478 6.663734 AGTACTCCCTCAATCCCAAAATAAG 58.336 40.000 0.00 0.00 0.00 1.73
478 479 5.536497 ACTCCCTCAATCCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
479 480 5.264395 ACTCCCTCAATCCCAAAATAAGTG 58.736 41.667 0.00 0.00 0.00 3.16
480 481 5.222337 ACTCCCTCAATCCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
481 482 5.261216 TCCCTCAATCCCAAAATAAGTGTC 58.739 41.667 0.00 0.00 0.00 3.67
482 483 5.015178 TCCCTCAATCCCAAAATAAGTGTCT 59.985 40.000 0.00 0.00 0.00 3.41
483 484 5.358160 CCCTCAATCCCAAAATAAGTGTCTC 59.642 44.000 0.00 0.00 0.00 3.36
484 485 5.945784 CCTCAATCCCAAAATAAGTGTCTCA 59.054 40.000 0.00 0.00 0.00 3.27
485 486 6.434028 CCTCAATCCCAAAATAAGTGTCTCAA 59.566 38.462 0.00 0.00 0.00 3.02
486 487 7.214467 TCAATCCCAAAATAAGTGTCTCAAC 57.786 36.000 0.00 0.00 0.00 3.18
487 488 7.004086 TCAATCCCAAAATAAGTGTCTCAACT 58.996 34.615 0.00 0.00 0.00 3.16
488 489 7.505585 TCAATCCCAAAATAAGTGTCTCAACTT 59.494 33.333 0.00 0.00 42.89 2.66
489 490 7.839680 ATCCCAAAATAAGTGTCTCAACTTT 57.160 32.000 0.00 0.00 40.77 2.66
490 491 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
491 492 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
492 493 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
493 494 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
494 495 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
498 499 9.915629 AATAAGTGTCTCAACTTTGTACTAGAG 57.084 33.333 0.00 0.00 40.77 2.43
499 500 5.774630 AGTGTCTCAACTTTGTACTAGAGC 58.225 41.667 0.00 0.00 0.00 4.09
500 501 5.536916 AGTGTCTCAACTTTGTACTAGAGCT 59.463 40.000 0.00 0.00 0.00 4.09
501 502 6.715718 AGTGTCTCAACTTTGTACTAGAGCTA 59.284 38.462 0.00 0.00 0.00 3.32
502 503 7.024768 GTGTCTCAACTTTGTACTAGAGCTAG 58.975 42.308 0.00 3.06 39.04 3.42
504 505 7.881751 TGTCTCAACTTTGTACTAGAGCTAGTA 59.118 37.037 12.18 12.18 43.98 1.82
527 528 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
528 529 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
529 530 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
530 531 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
531 532 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
532 533 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
533 534 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
534 535 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
535 536 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
536 537 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
537 538 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
538 539 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
539 540 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
540 541 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
541 542 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
542 543 4.518970 GCTTGAGACACTTATTTTGGGACA 59.481 41.667 0.00 0.00 0.00 4.02
543 544 5.335191 GCTTGAGACACTTATTTTGGGACAG 60.335 44.000 0.00 0.00 42.39 3.51
544 545 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
545 546 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
546 547 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
547 548 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
548 549 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
549 550 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
550 551 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
551 552 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
552 553 5.731678 ACTTATTTTGGGACAGAGGGAGTAT 59.268 40.000 0.00 0.00 42.39 2.12
553 554 6.217693 ACTTATTTTGGGACAGAGGGAGTATT 59.782 38.462 0.00 0.00 42.39 1.89
554 555 5.536497 ATTTTGGGACAGAGGGAGTATTT 57.464 39.130 0.00 0.00 42.39 1.40
860 961 2.554775 CTCAACGTGCTGCTGCTG 59.445 61.111 17.00 11.40 40.48 4.41
861 962 3.590443 CTCAACGTGCTGCTGCTGC 62.590 63.158 22.51 22.51 40.48 5.25
879 980 1.786582 CTCTTCAACGAGCTGCTGC 59.213 57.895 7.01 7.62 40.05 5.25
1511 1621 0.968901 AAGGAGATGTCGGCGGTGTA 60.969 55.000 7.21 0.00 0.00 2.90
1533 1643 0.394899 GCCAATTGGACTCTCTGGGG 60.395 60.000 29.02 0.00 37.39 4.96
1642 1752 1.587054 CCGGAGTTCGAGCAGAGTT 59.413 57.895 0.00 0.00 42.43 3.01
1823 1933 1.829533 CACAGGTGGCAGCAACCTT 60.830 57.895 20.15 8.22 46.14 3.50
1942 2053 0.536460 GACTCGGGAGGCTCCTCTAG 60.536 65.000 31.39 25.38 42.38 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027837 AGGACAAAGGGCATTTTGATGC 60.028 45.455 17.19 2.87 46.27 3.91
1 2 3.967332 AGGACAAAGGGCATTTTGATG 57.033 42.857 17.19 0.83 39.79 3.07
2 3 4.505390 CCAAAGGACAAAGGGCATTTTGAT 60.505 41.667 17.19 5.16 39.79 2.57
3 4 3.181456 CCAAAGGACAAAGGGCATTTTGA 60.181 43.478 17.19 0.00 39.79 2.69
4 5 3.140623 CCAAAGGACAAAGGGCATTTTG 58.859 45.455 10.88 10.88 42.38 2.44
5 6 3.044894 TCCAAAGGACAAAGGGCATTTT 58.955 40.909 0.00 0.00 0.00 1.82
6 7 2.634453 CTCCAAAGGACAAAGGGCATTT 59.366 45.455 0.00 0.00 0.00 2.32
7 8 2.158325 TCTCCAAAGGACAAAGGGCATT 60.158 45.455 0.00 0.00 0.00 3.56
8 9 1.428912 TCTCCAAAGGACAAAGGGCAT 59.571 47.619 0.00 0.00 0.00 4.40
9 10 0.850100 TCTCCAAAGGACAAAGGGCA 59.150 50.000 0.00 0.00 0.00 5.36
10 11 1.613925 GTTCTCCAAAGGACAAAGGGC 59.386 52.381 0.00 0.00 30.54 5.19
11 12 2.623416 GTGTTCTCCAAAGGACAAAGGG 59.377 50.000 0.00 0.00 42.80 3.95
12 13 3.287222 TGTGTTCTCCAAAGGACAAAGG 58.713 45.455 0.00 0.00 42.80 3.11
13 14 4.823989 AGATGTGTTCTCCAAAGGACAAAG 59.176 41.667 0.00 0.00 42.80 2.77
14 15 4.792068 AGATGTGTTCTCCAAAGGACAAA 58.208 39.130 0.00 0.00 42.80 2.83
15 16 4.389374 GAGATGTGTTCTCCAAAGGACAA 58.611 43.478 0.00 0.00 42.80 3.18
16 17 4.008074 GAGATGTGTTCTCCAAAGGACA 57.992 45.455 0.00 0.00 44.46 4.02
36 37 9.745880 GGAGAACGACATGAGTAAATTATTAGA 57.254 33.333 0.00 0.00 0.00 2.10
37 38 9.529325 TGGAGAACGACATGAGTAAATTATTAG 57.471 33.333 0.00 0.00 0.00 1.73
38 39 9.309516 GTGGAGAACGACATGAGTAAATTATTA 57.690 33.333 0.00 0.00 0.00 0.98
39 40 7.280205 GGTGGAGAACGACATGAGTAAATTATT 59.720 37.037 0.00 0.00 0.00 1.40
40 41 6.761714 GGTGGAGAACGACATGAGTAAATTAT 59.238 38.462 0.00 0.00 0.00 1.28
41 42 6.103997 GGTGGAGAACGACATGAGTAAATTA 58.896 40.000 0.00 0.00 0.00 1.40
42 43 4.935808 GGTGGAGAACGACATGAGTAAATT 59.064 41.667 0.00 0.00 0.00 1.82
43 44 4.504858 GGTGGAGAACGACATGAGTAAAT 58.495 43.478 0.00 0.00 0.00 1.40
44 45 3.306502 GGGTGGAGAACGACATGAGTAAA 60.307 47.826 0.00 0.00 0.00 2.01
45 46 2.232941 GGGTGGAGAACGACATGAGTAA 59.767 50.000 0.00 0.00 0.00 2.24
46 47 1.822990 GGGTGGAGAACGACATGAGTA 59.177 52.381 0.00 0.00 0.00 2.59
47 48 0.608640 GGGTGGAGAACGACATGAGT 59.391 55.000 0.00 0.00 0.00 3.41
48 49 0.108138 GGGGTGGAGAACGACATGAG 60.108 60.000 0.00 0.00 0.00 2.90
49 50 0.834261 TGGGGTGGAGAACGACATGA 60.834 55.000 0.00 0.00 0.00 3.07
50 51 0.253044 ATGGGGTGGAGAACGACATG 59.747 55.000 0.00 0.00 0.00 3.21
51 52 0.253044 CATGGGGTGGAGAACGACAT 59.747 55.000 0.00 0.00 0.00 3.06
52 53 1.125093 ACATGGGGTGGAGAACGACA 61.125 55.000 0.00 0.00 0.00 4.35
53 54 0.899720 TACATGGGGTGGAGAACGAC 59.100 55.000 0.00 0.00 0.00 4.34
54 55 1.760613 GATACATGGGGTGGAGAACGA 59.239 52.381 0.00 0.00 0.00 3.85
55 56 1.762957 AGATACATGGGGTGGAGAACG 59.237 52.381 0.00 0.00 0.00 3.95
56 57 2.104963 GGAGATACATGGGGTGGAGAAC 59.895 54.545 0.00 0.00 0.00 3.01
57 58 2.293519 TGGAGATACATGGGGTGGAGAA 60.294 50.000 0.00 0.00 0.00 2.87
58 59 1.293763 TGGAGATACATGGGGTGGAGA 59.706 52.381 0.00 0.00 0.00 3.71
59 60 1.806496 TGGAGATACATGGGGTGGAG 58.194 55.000 0.00 0.00 0.00 3.86
60 61 2.126882 CTTGGAGATACATGGGGTGGA 58.873 52.381 0.00 0.00 0.00 4.02
61 62 2.126882 TCTTGGAGATACATGGGGTGG 58.873 52.381 0.00 0.00 0.00 4.61
62 63 4.443978 AATCTTGGAGATACATGGGGTG 57.556 45.455 0.00 0.00 32.89 4.61
63 64 6.786843 AATAATCTTGGAGATACATGGGGT 57.213 37.500 0.00 0.00 32.89 4.95
64 65 7.946776 AGAAAATAATCTTGGAGATACATGGGG 59.053 37.037 0.00 0.00 32.89 4.96
65 66 8.930846 AGAAAATAATCTTGGAGATACATGGG 57.069 34.615 0.00 0.00 32.89 4.00
74 75 9.933723 ACAAAATGGAAGAAAATAATCTTGGAG 57.066 29.630 0.00 0.00 39.70 3.86
75 76 9.709495 CACAAAATGGAAGAAAATAATCTTGGA 57.291 29.630 0.00 0.00 39.70 3.53
76 77 9.709495 TCACAAAATGGAAGAAAATAATCTTGG 57.291 29.630 0.00 0.00 39.70 3.61
80 81 9.874205 TGGATCACAAAATGGAAGAAAATAATC 57.126 29.630 0.00 0.00 0.00 1.75
82 83 9.709495 CTTGGATCACAAAATGGAAGAAAATAA 57.291 29.630 0.00 0.00 38.91 1.40
83 84 9.087871 TCTTGGATCACAAAATGGAAGAAAATA 57.912 29.630 0.00 0.00 38.91 1.40
84 85 7.965718 TCTTGGATCACAAAATGGAAGAAAAT 58.034 30.769 0.00 0.00 38.91 1.82
85 86 7.358770 TCTTGGATCACAAAATGGAAGAAAA 57.641 32.000 0.00 0.00 38.91 2.29
86 87 6.975196 TCTTGGATCACAAAATGGAAGAAA 57.025 33.333 0.00 0.00 38.91 2.52
87 88 6.975196 TTCTTGGATCACAAAATGGAAGAA 57.025 33.333 0.00 0.00 38.91 2.52
88 89 6.975196 TTTCTTGGATCACAAAATGGAAGA 57.025 33.333 0.00 0.00 38.91 2.87
123 124 9.479549 AATTGTATAGATGGACAGGACATTTTT 57.520 29.630 0.00 0.00 0.00 1.94
124 125 9.479549 AAATTGTATAGATGGACAGGACATTTT 57.520 29.630 0.00 0.00 0.00 1.82
125 126 9.479549 AAAATTGTATAGATGGACAGGACATTT 57.520 29.630 0.00 0.00 0.00 2.32
126 127 9.125026 GAAAATTGTATAGATGGACAGGACATT 57.875 33.333 0.00 0.00 0.00 2.71
127 128 8.497745 AGAAAATTGTATAGATGGACAGGACAT 58.502 33.333 0.00 0.00 0.00 3.06
128 129 7.861629 AGAAAATTGTATAGATGGACAGGACA 58.138 34.615 0.00 0.00 0.00 4.02
129 130 8.738645 AAGAAAATTGTATAGATGGACAGGAC 57.261 34.615 0.00 0.00 0.00 3.85
141 142 9.632807 GGCACATGTTGTTAAGAAAATTGTATA 57.367 29.630 0.00 0.00 0.00 1.47
142 143 8.147058 TGGCACATGTTGTTAAGAAAATTGTAT 58.853 29.630 0.00 0.00 0.00 2.29
143 144 7.492524 TGGCACATGTTGTTAAGAAAATTGTA 58.507 30.769 0.00 0.00 0.00 2.41
144 145 6.344500 TGGCACATGTTGTTAAGAAAATTGT 58.656 32.000 0.00 0.00 0.00 2.71
145 146 6.841443 TGGCACATGTTGTTAAGAAAATTG 57.159 33.333 0.00 0.00 0.00 2.32
163 164 4.874970 AGAAGATTGAACAAACATGGCAC 58.125 39.130 0.00 0.00 0.00 5.01
164 165 5.534207 AAGAAGATTGAACAAACATGGCA 57.466 34.783 0.00 0.00 0.00 4.92
165 166 6.479660 TGAAAAGAAGATTGAACAAACATGGC 59.520 34.615 0.00 0.00 0.00 4.40
166 167 7.492020 TGTGAAAAGAAGATTGAACAAACATGG 59.508 33.333 0.00 0.00 0.00 3.66
167 168 8.410030 TGTGAAAAGAAGATTGAACAAACATG 57.590 30.769 0.00 0.00 0.00 3.21
168 169 9.434420 TTTGTGAAAAGAAGATTGAACAAACAT 57.566 25.926 0.00 0.00 32.89 2.71
169 170 8.824159 TTTGTGAAAAGAAGATTGAACAAACA 57.176 26.923 0.00 0.00 32.89 2.83
172 173 9.434420 ACATTTTGTGAAAAGAAGATTGAACAA 57.566 25.926 0.00 0.00 33.22 2.83
209 210 1.351017 TGAATGACCAGAGTGGGGAAC 59.649 52.381 0.00 0.00 43.37 3.62
210 211 1.351017 GTGAATGACCAGAGTGGGGAA 59.649 52.381 0.00 0.00 43.37 3.97
211 212 0.984230 GTGAATGACCAGAGTGGGGA 59.016 55.000 0.00 0.00 43.37 4.81
212 213 0.692476 TGTGAATGACCAGAGTGGGG 59.308 55.000 0.00 0.00 43.37 4.96
213 214 2.026915 TCATGTGAATGACCAGAGTGGG 60.027 50.000 0.00 0.00 43.37 4.61
214 215 3.005554 GTCATGTGAATGACCAGAGTGG 58.994 50.000 7.47 0.00 43.75 4.00
233 234 5.368256 AAAGAGCAAAGATGACACATGTC 57.632 39.130 5.02 5.02 44.97 3.06
234 235 5.068198 ACAAAAGAGCAAAGATGACACATGT 59.932 36.000 0.00 0.00 0.00 3.21
235 236 5.526115 ACAAAAGAGCAAAGATGACACATG 58.474 37.500 0.00 0.00 0.00 3.21
236 237 5.779529 ACAAAAGAGCAAAGATGACACAT 57.220 34.783 0.00 0.00 0.00 3.21
237 238 5.822519 ACTACAAAAGAGCAAAGATGACACA 59.177 36.000 0.00 0.00 0.00 3.72
238 239 6.305693 ACTACAAAAGAGCAAAGATGACAC 57.694 37.500 0.00 0.00 0.00 3.67
239 240 7.217200 AGTACTACAAAAGAGCAAAGATGACA 58.783 34.615 0.00 0.00 0.00 3.58
240 241 7.148557 GGAGTACTACAAAAGAGCAAAGATGAC 60.149 40.741 0.00 0.00 0.00 3.06
241 242 6.874134 GGAGTACTACAAAAGAGCAAAGATGA 59.126 38.462 0.00 0.00 0.00 2.92
242 243 6.092807 GGGAGTACTACAAAAGAGCAAAGATG 59.907 42.308 7.57 0.00 0.00 2.90
243 244 6.013293 AGGGAGTACTACAAAAGAGCAAAGAT 60.013 38.462 7.57 0.00 0.00 2.40
244 245 5.307196 AGGGAGTACTACAAAAGAGCAAAGA 59.693 40.000 7.57 0.00 0.00 2.52
245 246 5.552178 AGGGAGTACTACAAAAGAGCAAAG 58.448 41.667 7.57 0.00 0.00 2.77
246 247 5.307196 AGAGGGAGTACTACAAAAGAGCAAA 59.693 40.000 7.57 0.00 0.00 3.68
247 248 4.838986 AGAGGGAGTACTACAAAAGAGCAA 59.161 41.667 7.57 0.00 0.00 3.91
248 249 4.220821 CAGAGGGAGTACTACAAAAGAGCA 59.779 45.833 7.57 0.00 0.00 4.26
249 250 4.221041 ACAGAGGGAGTACTACAAAAGAGC 59.779 45.833 7.57 0.00 0.00 4.09
250 251 5.986501 ACAGAGGGAGTACTACAAAAGAG 57.013 43.478 7.57 0.00 0.00 2.85
251 252 8.311836 CAATTACAGAGGGAGTACTACAAAAGA 58.688 37.037 7.57 0.00 0.00 2.52
252 253 8.311836 TCAATTACAGAGGGAGTACTACAAAAG 58.688 37.037 7.57 0.00 0.00 2.27
253 254 8.197592 TCAATTACAGAGGGAGTACTACAAAA 57.802 34.615 7.57 0.00 0.00 2.44
254 255 7.786046 TCAATTACAGAGGGAGTACTACAAA 57.214 36.000 7.57 0.00 0.00 2.83
255 256 7.973048 ATCAATTACAGAGGGAGTACTACAA 57.027 36.000 7.57 0.00 0.00 2.41
256 257 7.618117 TCAATCAATTACAGAGGGAGTACTACA 59.382 37.037 7.57 0.00 0.00 2.74
257 258 8.008513 TCAATCAATTACAGAGGGAGTACTAC 57.991 38.462 0.00 0.00 0.00 2.73
258 259 8.603898 TTCAATCAATTACAGAGGGAGTACTA 57.396 34.615 0.00 0.00 0.00 1.82
259 260 7.496346 TTCAATCAATTACAGAGGGAGTACT 57.504 36.000 0.00 0.00 0.00 2.73
260 261 7.987458 TCATTCAATCAATTACAGAGGGAGTAC 59.013 37.037 0.00 0.00 0.00 2.73
261 262 8.089625 TCATTCAATCAATTACAGAGGGAGTA 57.910 34.615 0.00 0.00 0.00 2.59
262 263 6.962182 TCATTCAATCAATTACAGAGGGAGT 58.038 36.000 0.00 0.00 0.00 3.85
263 264 7.052873 ACTCATTCAATCAATTACAGAGGGAG 58.947 38.462 0.00 0.00 0.00 4.30
264 265 6.962182 ACTCATTCAATCAATTACAGAGGGA 58.038 36.000 0.00 0.00 0.00 4.20
265 266 7.636150 AACTCATTCAATCAATTACAGAGGG 57.364 36.000 0.00 0.00 0.00 4.30
266 267 9.565213 GAAAACTCATTCAATCAATTACAGAGG 57.435 33.333 0.00 0.00 0.00 3.69
274 275 9.048446 CCACAAAAGAAAACTCATTCAATCAAT 57.952 29.630 0.00 0.00 0.00 2.57
275 276 8.040132 ACCACAAAAGAAAACTCATTCAATCAA 58.960 29.630 0.00 0.00 0.00 2.57
276 277 7.555087 ACCACAAAAGAAAACTCATTCAATCA 58.445 30.769 0.00 0.00 0.00 2.57
277 278 8.424274 AACCACAAAAGAAAACTCATTCAATC 57.576 30.769 0.00 0.00 0.00 2.67
278 279 8.791327 AAACCACAAAAGAAAACTCATTCAAT 57.209 26.923 0.00 0.00 0.00 2.57
279 280 7.875041 TGAAACCACAAAAGAAAACTCATTCAA 59.125 29.630 0.00 0.00 0.00 2.69
280 281 7.382110 TGAAACCACAAAAGAAAACTCATTCA 58.618 30.769 0.00 0.00 0.00 2.57
281 282 7.826260 TGAAACCACAAAAGAAAACTCATTC 57.174 32.000 0.00 0.00 0.00 2.67
283 284 9.480053 CATATGAAACCACAAAAGAAAACTCAT 57.520 29.630 0.00 0.00 0.00 2.90
284 285 8.690884 TCATATGAAACCACAAAAGAAAACTCA 58.309 29.630 1.98 0.00 0.00 3.41
285 286 9.696917 ATCATATGAAACCACAAAAGAAAACTC 57.303 29.630 9.99 0.00 0.00 3.01
286 287 9.480053 CATCATATGAAACCACAAAAGAAAACT 57.520 29.630 9.99 0.00 0.00 2.66
287 288 9.474920 TCATCATATGAAACCACAAAAGAAAAC 57.525 29.630 9.99 0.00 36.11 2.43
288 289 9.695526 CTCATCATATGAAACCACAAAAGAAAA 57.304 29.630 9.99 0.00 39.11 2.29
289 290 8.859090 ACTCATCATATGAAACCACAAAAGAAA 58.141 29.630 9.99 0.00 39.11 2.52
290 291 8.408043 ACTCATCATATGAAACCACAAAAGAA 57.592 30.769 9.99 0.00 39.11 2.52
291 292 8.408043 AACTCATCATATGAAACCACAAAAGA 57.592 30.769 9.99 0.00 39.11 2.52
292 293 8.918658 CAAACTCATCATATGAAACCACAAAAG 58.081 33.333 9.99 0.38 39.11 2.27
293 294 8.420222 ACAAACTCATCATATGAAACCACAAAA 58.580 29.630 9.99 0.00 39.11 2.44
294 295 7.950512 ACAAACTCATCATATGAAACCACAAA 58.049 30.769 9.99 0.00 39.11 2.83
295 296 7.230309 TGACAAACTCATCATATGAAACCACAA 59.770 33.333 9.99 0.00 39.11 3.33
296 297 6.714356 TGACAAACTCATCATATGAAACCACA 59.286 34.615 9.99 0.00 39.11 4.17
297 298 7.144722 TGACAAACTCATCATATGAAACCAC 57.855 36.000 9.99 0.00 39.11 4.16
298 299 7.757941 TTGACAAACTCATCATATGAAACCA 57.242 32.000 9.99 0.00 39.11 3.67
303 304 9.498176 CCTGATATTGACAAACTCATCATATGA 57.502 33.333 8.10 8.10 37.76 2.15
304 305 9.498176 TCCTGATATTGACAAACTCATCATATG 57.502 33.333 0.00 0.00 0.00 1.78
307 308 8.991783 AATCCTGATATTGACAAACTCATCAT 57.008 30.769 0.00 0.00 0.00 2.45
308 309 9.551734 CTAATCCTGATATTGACAAACTCATCA 57.448 33.333 0.00 0.00 0.00 3.07
309 310 8.997323 CCTAATCCTGATATTGACAAACTCATC 58.003 37.037 0.00 0.00 0.00 2.92
310 311 8.497745 ACCTAATCCTGATATTGACAAACTCAT 58.502 33.333 0.00 0.00 0.00 2.90
311 312 7.861629 ACCTAATCCTGATATTGACAAACTCA 58.138 34.615 0.00 0.00 0.00 3.41
316 317 8.540388 GCCTATACCTAATCCTGATATTGACAA 58.460 37.037 0.00 0.00 0.00 3.18
317 318 7.678171 TGCCTATACCTAATCCTGATATTGACA 59.322 37.037 0.00 0.00 0.00 3.58
318 319 8.079211 TGCCTATACCTAATCCTGATATTGAC 57.921 38.462 0.00 0.00 0.00 3.18
319 320 8.708378 CATGCCTATACCTAATCCTGATATTGA 58.292 37.037 0.00 0.00 0.00 2.57
320 321 7.443575 GCATGCCTATACCTAATCCTGATATTG 59.556 40.741 6.36 0.00 0.00 1.90
321 322 7.512992 GCATGCCTATACCTAATCCTGATATT 58.487 38.462 6.36 0.00 0.00 1.28
322 323 6.239430 CGCATGCCTATACCTAATCCTGATAT 60.239 42.308 13.15 0.00 0.00 1.63
323 324 5.069119 CGCATGCCTATACCTAATCCTGATA 59.931 44.000 13.15 0.00 0.00 2.15
324 325 4.141846 CGCATGCCTATACCTAATCCTGAT 60.142 45.833 13.15 0.00 0.00 2.90
325 326 3.195610 CGCATGCCTATACCTAATCCTGA 59.804 47.826 13.15 0.00 0.00 3.86
326 327 3.525537 CGCATGCCTATACCTAATCCTG 58.474 50.000 13.15 0.00 0.00 3.86
327 328 2.501723 CCGCATGCCTATACCTAATCCT 59.498 50.000 13.15 0.00 0.00 3.24
328 329 2.236395 ACCGCATGCCTATACCTAATCC 59.764 50.000 13.15 0.00 0.00 3.01
329 330 3.611766 ACCGCATGCCTATACCTAATC 57.388 47.619 13.15 0.00 0.00 1.75
330 331 5.693769 AATACCGCATGCCTATACCTAAT 57.306 39.130 13.15 0.00 0.00 1.73
331 332 5.128171 CCTAATACCGCATGCCTATACCTAA 59.872 44.000 13.15 0.00 0.00 2.69
332 333 4.647853 CCTAATACCGCATGCCTATACCTA 59.352 45.833 13.15 0.00 0.00 3.08
333 334 3.451178 CCTAATACCGCATGCCTATACCT 59.549 47.826 13.15 0.00 0.00 3.08
334 335 3.197116 ACCTAATACCGCATGCCTATACC 59.803 47.826 13.15 0.00 0.00 2.73
335 336 4.467198 ACCTAATACCGCATGCCTATAC 57.533 45.455 13.15 0.00 0.00 1.47
336 337 5.894964 TGATACCTAATACCGCATGCCTATA 59.105 40.000 13.15 2.19 0.00 1.31
337 338 4.714802 TGATACCTAATACCGCATGCCTAT 59.285 41.667 13.15 4.38 0.00 2.57
338 339 4.081862 GTGATACCTAATACCGCATGCCTA 60.082 45.833 13.15 1.82 0.00 3.93
339 340 2.903784 TGATACCTAATACCGCATGCCT 59.096 45.455 13.15 0.00 0.00 4.75
340 341 3.000727 GTGATACCTAATACCGCATGCC 58.999 50.000 13.15 0.00 0.00 4.40
341 342 3.000727 GGTGATACCTAATACCGCATGC 58.999 50.000 7.91 7.91 34.73 4.06
354 355 8.863872 ATGGTTATTTAATAGCAGGTGATACC 57.136 34.615 1.58 0.00 38.99 2.73
357 358 8.995027 TGAATGGTTATTTAATAGCAGGTGAT 57.005 30.769 1.58 0.00 0.00 3.06
358 359 8.849168 CATGAATGGTTATTTAATAGCAGGTGA 58.151 33.333 1.58 0.00 0.00 4.02
359 360 8.632679 ACATGAATGGTTATTTAATAGCAGGTG 58.367 33.333 0.00 0.00 0.00 4.00
360 361 8.632679 CACATGAATGGTTATTTAATAGCAGGT 58.367 33.333 0.00 0.00 0.00 4.00
361 362 8.849168 TCACATGAATGGTTATTTAATAGCAGG 58.151 33.333 0.00 0.00 0.00 4.85
370 371 9.754382 GCATTTAGATCACATGAATGGTTATTT 57.246 29.630 0.00 0.00 0.00 1.40
371 372 9.139734 AGCATTTAGATCACATGAATGGTTATT 57.860 29.630 0.00 0.00 35.60 1.40
372 373 8.701908 AGCATTTAGATCACATGAATGGTTAT 57.298 30.769 0.00 0.00 35.60 1.89
373 374 7.994911 AGAGCATTTAGATCACATGAATGGTTA 59.005 33.333 0.00 0.00 38.21 2.85
374 375 6.832384 AGAGCATTTAGATCACATGAATGGTT 59.168 34.615 0.00 0.00 38.21 3.67
375 376 6.363065 AGAGCATTTAGATCACATGAATGGT 58.637 36.000 0.00 2.36 40.05 3.55
376 377 6.879276 AGAGCATTTAGATCACATGAATGG 57.121 37.500 0.00 0.00 34.30 3.16
392 393 9.950496 CCCTCTGTTATGTAATATAAGAGCATT 57.050 33.333 0.00 0.00 37.39 3.56
393 394 9.326489 TCCCTCTGTTATGTAATATAAGAGCAT 57.674 33.333 0.00 0.00 37.39 3.79
394 395 8.721133 TCCCTCTGTTATGTAATATAAGAGCA 57.279 34.615 0.00 0.00 37.39 4.26
395 396 8.808092 ACTCCCTCTGTTATGTAATATAAGAGC 58.192 37.037 0.00 0.00 37.39 4.09
409 410 9.742144 GTCAGAGATTATATACTCCCTCTGTTA 57.258 37.037 18.99 7.67 44.59 2.41
410 411 8.228206 TGTCAGAGATTATATACTCCCTCTGTT 58.772 37.037 18.99 0.00 44.59 3.16
411 412 7.760607 TGTCAGAGATTATATACTCCCTCTGT 58.239 38.462 18.99 2.05 44.59 3.41
412 413 8.821686 ATGTCAGAGATTATATACTCCCTCTG 57.178 38.462 16.23 16.23 45.24 3.35
413 414 9.836179 AAATGTCAGAGATTATATACTCCCTCT 57.164 33.333 0.00 0.00 34.13 3.69
414 415 9.868277 CAAATGTCAGAGATTATATACTCCCTC 57.132 37.037 0.00 0.00 34.13 4.30
415 416 8.317679 GCAAATGTCAGAGATTATATACTCCCT 58.682 37.037 0.00 0.00 34.13 4.20
416 417 7.550906 GGCAAATGTCAGAGATTATATACTCCC 59.449 40.741 0.00 0.00 34.13 4.30
417 418 8.097038 TGGCAAATGTCAGAGATTATATACTCC 58.903 37.037 0.00 0.00 34.13 3.85
418 419 9.494271 TTGGCAAATGTCAGAGATTATATACTC 57.506 33.333 0.00 0.00 0.00 2.59
419 420 9.851686 TTTGGCAAATGTCAGAGATTATATACT 57.148 29.630 8.93 0.00 0.00 2.12
422 423 9.976511 CAATTTGGCAAATGTCAGAGATTATAT 57.023 29.630 24.96 2.42 0.00 0.86
423 424 9.187996 TCAATTTGGCAAATGTCAGAGATTATA 57.812 29.630 24.96 0.00 0.00 0.98
424 425 8.070034 TCAATTTGGCAAATGTCAGAGATTAT 57.930 30.769 24.96 3.06 0.00 1.28
425 426 7.465353 TCAATTTGGCAAATGTCAGAGATTA 57.535 32.000 24.96 0.00 0.00 1.75
426 427 6.349243 TCAATTTGGCAAATGTCAGAGATT 57.651 33.333 24.96 5.11 0.00 2.40
427 428 5.988310 TCAATTTGGCAAATGTCAGAGAT 57.012 34.783 24.96 5.02 0.00 2.75
428 429 5.477637 TCATCAATTTGGCAAATGTCAGAGA 59.522 36.000 24.96 15.14 0.00 3.10
429 430 5.716094 TCATCAATTTGGCAAATGTCAGAG 58.284 37.500 24.96 13.33 0.00 3.35
430 431 5.725325 TCATCAATTTGGCAAATGTCAGA 57.275 34.783 24.96 19.22 0.00 3.27
431 432 5.929992 ACTTCATCAATTTGGCAAATGTCAG 59.070 36.000 24.96 16.35 0.00 3.51
432 433 5.856156 ACTTCATCAATTTGGCAAATGTCA 58.144 33.333 24.96 12.69 0.00 3.58
433 434 7.092716 AGTACTTCATCAATTTGGCAAATGTC 58.907 34.615 24.96 10.81 0.00 3.06
434 435 6.996509 AGTACTTCATCAATTTGGCAAATGT 58.003 32.000 24.96 17.83 0.00 2.71
435 436 6.532657 GGAGTACTTCATCAATTTGGCAAATG 59.467 38.462 24.96 18.02 0.00 2.32
436 437 6.351286 GGGAGTACTTCATCAATTTGGCAAAT 60.351 38.462 19.39 19.39 0.00 2.32
437 438 5.047377 GGGAGTACTTCATCAATTTGGCAAA 60.047 40.000 16.01 16.01 0.00 3.68
438 439 4.462483 GGGAGTACTTCATCAATTTGGCAA 59.538 41.667 2.92 0.00 0.00 4.52
439 440 4.016444 GGGAGTACTTCATCAATTTGGCA 58.984 43.478 2.92 0.00 0.00 4.92
440 441 4.273318 AGGGAGTACTTCATCAATTTGGC 58.727 43.478 2.92 0.00 0.00 4.52
441 442 5.500234 TGAGGGAGTACTTCATCAATTTGG 58.500 41.667 16.06 0.00 0.00 3.28
442 443 7.201767 GGATTGAGGGAGTACTTCATCAATTTG 60.202 40.741 33.52 0.00 40.74 2.32
443 444 6.830838 GGATTGAGGGAGTACTTCATCAATTT 59.169 38.462 33.52 20.65 40.74 1.82
444 445 6.360618 GGATTGAGGGAGTACTTCATCAATT 58.639 40.000 33.52 22.13 40.74 2.32
445 446 5.163152 GGGATTGAGGGAGTACTTCATCAAT 60.163 44.000 33.62 33.62 42.10 2.57
446 447 4.164221 GGGATTGAGGGAGTACTTCATCAA 59.836 45.833 28.33 28.33 37.41 2.57
447 448 3.711704 GGGATTGAGGGAGTACTTCATCA 59.288 47.826 14.50 14.50 0.00 3.07
448 449 3.711704 TGGGATTGAGGGAGTACTTCATC 59.288 47.826 8.95 8.95 0.00 2.92
449 450 3.736094 TGGGATTGAGGGAGTACTTCAT 58.264 45.455 2.92 0.00 0.00 2.57
450 451 3.199442 TGGGATTGAGGGAGTACTTCA 57.801 47.619 2.92 0.00 0.00 3.02
451 452 4.569719 TTTGGGATTGAGGGAGTACTTC 57.430 45.455 0.00 0.00 0.00 3.01
452 453 5.536497 ATTTTGGGATTGAGGGAGTACTT 57.464 39.130 0.00 0.00 0.00 2.24
453 454 6.217693 ACTTATTTTGGGATTGAGGGAGTACT 59.782 38.462 0.00 0.00 0.00 2.73
454 455 6.318900 CACTTATTTTGGGATTGAGGGAGTAC 59.681 42.308 0.00 0.00 0.00 2.73
455 456 6.011981 ACACTTATTTTGGGATTGAGGGAGTA 60.012 38.462 0.00 0.00 0.00 2.59
456 457 5.222337 ACACTTATTTTGGGATTGAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
457 458 5.264395 ACACTTATTTTGGGATTGAGGGAG 58.736 41.667 0.00 0.00 0.00 4.30
458 459 5.015178 AGACACTTATTTTGGGATTGAGGGA 59.985 40.000 0.00 0.00 0.00 4.20
459 460 5.264395 AGACACTTATTTTGGGATTGAGGG 58.736 41.667 0.00 0.00 0.00 4.30
460 461 5.945784 TGAGACACTTATTTTGGGATTGAGG 59.054 40.000 0.00 0.00 0.00 3.86
461 462 7.175641 AGTTGAGACACTTATTTTGGGATTGAG 59.824 37.037 0.00 0.00 0.00 3.02
462 463 7.004086 AGTTGAGACACTTATTTTGGGATTGA 58.996 34.615 0.00 0.00 0.00 2.57
463 464 7.219484 AGTTGAGACACTTATTTTGGGATTG 57.781 36.000 0.00 0.00 0.00 2.67
464 465 7.839680 AAGTTGAGACACTTATTTTGGGATT 57.160 32.000 0.00 0.00 35.10 3.01
465 466 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
466 467 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
467 468 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
468 469 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
472 473 9.915629 CTCTAGTACAAAGTTGAGACACTTATT 57.084 33.333 0.00 0.00 35.87 1.40
473 474 8.030106 GCTCTAGTACAAAGTTGAGACACTTAT 58.970 37.037 0.00 0.00 35.87 1.73
474 475 7.230913 AGCTCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
475 476 6.041069 AGCTCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
476 477 5.536916 AGCTCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 31.74 3.55
477 478 5.774630 AGCTCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 31.74 3.67
478 479 6.715718 ACTAGCTCTAGTACAAAGTTGAGACA 59.284 38.462 7.73 0.00 43.98 3.41
479 480 7.148355 ACTAGCTCTAGTACAAAGTTGAGAC 57.852 40.000 7.73 0.00 43.98 3.36
503 504 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
504 505 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
505 506 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
506 507 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
507 508 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
508 509 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
509 510 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
510 511 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
511 512 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
512 513 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
513 514 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
514 515 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
515 516 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
516 517 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
517 518 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
518 519 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
519 520 4.518970 TGTCCCAAAATAAGTGTCTCAAGC 59.481 41.667 0.00 0.00 0.00 4.01
520 521 5.997746 TCTGTCCCAAAATAAGTGTCTCAAG 59.002 40.000 0.00 0.00 0.00 3.02
521 522 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
522 523 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
523 524 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
524 525 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
525 526 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
526 527 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
527 528 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
528 529 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
529 530 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
530 531 6.652205 AATACTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
531 532 6.652205 AAATACTCCCTCTGTCCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
532 533 5.536497 AAATACTCCCTCTGTCCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
533 534 6.457159 TTAAATACTCCCTCTGTCCCAAAA 57.543 37.500 0.00 0.00 0.00 2.44
534 535 6.011981 ACATTAAATACTCCCTCTGTCCCAAA 60.012 38.462 0.00 0.00 0.00 3.28
535 536 5.491078 ACATTAAATACTCCCTCTGTCCCAA 59.509 40.000 0.00 0.00 0.00 4.12
536 537 5.036916 ACATTAAATACTCCCTCTGTCCCA 58.963 41.667 0.00 0.00 0.00 4.37
537 538 5.632034 ACATTAAATACTCCCTCTGTCCC 57.368 43.478 0.00 0.00 0.00 4.46
538 539 8.019656 TCTAACATTAAATACTCCCTCTGTCC 57.980 38.462 0.00 0.00 0.00 4.02
539 540 9.315525 GTTCTAACATTAAATACTCCCTCTGTC 57.684 37.037 0.00 0.00 0.00 3.51
540 541 8.822805 TGTTCTAACATTAAATACTCCCTCTGT 58.177 33.333 0.00 0.00 33.17 3.41
541 542 9.319143 CTGTTCTAACATTAAATACTCCCTCTG 57.681 37.037 0.00 0.00 38.41 3.35
542 543 8.487028 CCTGTTCTAACATTAAATACTCCCTCT 58.513 37.037 0.00 0.00 38.41 3.69
543 544 7.715686 CCCTGTTCTAACATTAAATACTCCCTC 59.284 40.741 0.00 0.00 38.41 4.30
544 545 7.184022 ACCCTGTTCTAACATTAAATACTCCCT 59.816 37.037 0.00 0.00 38.41 4.20
545 546 7.344134 ACCCTGTTCTAACATTAAATACTCCC 58.656 38.462 0.00 0.00 38.41 4.30
546 547 8.674607 CAACCCTGTTCTAACATTAAATACTCC 58.325 37.037 0.00 0.00 38.41 3.85
547 548 9.227777 ACAACCCTGTTCTAACATTAAATACTC 57.772 33.333 0.00 0.00 38.41 2.59
548 549 9.010029 CACAACCCTGTTCTAACATTAAATACT 57.990 33.333 0.00 0.00 38.41 2.12
549 550 7.753580 GCACAACCCTGTTCTAACATTAAATAC 59.246 37.037 0.00 0.00 38.41 1.89
550 551 7.668052 AGCACAACCCTGTTCTAACATTAAATA 59.332 33.333 0.00 0.00 38.41 1.40
551 552 6.493458 AGCACAACCCTGTTCTAACATTAAAT 59.507 34.615 0.00 0.00 38.41 1.40
552 553 5.830991 AGCACAACCCTGTTCTAACATTAAA 59.169 36.000 0.00 0.00 38.41 1.52
553 554 5.240623 CAGCACAACCCTGTTCTAACATTAA 59.759 40.000 0.00 0.00 38.41 1.40
554 555 4.759693 CAGCACAACCCTGTTCTAACATTA 59.240 41.667 0.00 0.00 38.41 1.90
650 651 2.834549 AGTGAGCCTATATTCCATCGGG 59.165 50.000 0.00 0.00 0.00 5.14
861 962 1.786582 GCAGCAGCTCGTTGAAGAG 59.213 57.895 0.00 0.00 41.03 2.85
879 980 1.069159 CACTTTGAAGAGCAGCAGCAG 60.069 52.381 3.17 0.00 45.49 4.24
880 981 0.949397 CACTTTGAAGAGCAGCAGCA 59.051 50.000 3.17 0.00 45.49 4.41
881 982 0.386985 GCACTTTGAAGAGCAGCAGC 60.387 55.000 8.05 0.00 41.43 5.25
1511 1621 0.392193 CAGAGAGTCCAATTGGCGCT 60.392 55.000 20.33 19.82 34.44 5.92
1533 1643 1.089920 ATCTGCGACAAACATCAGCC 58.910 50.000 0.00 0.00 0.00 4.85
1642 1752 1.020861 CGTGCCAATAGCTGAGCACA 61.021 55.000 23.18 0.00 45.27 4.57
1942 2053 1.985116 AGGGAGCCCTCACGAGAAC 60.985 63.158 1.14 0.00 44.43 3.01
2197 2317 2.213499 CGGCAACAGAAAGAGAAGTGT 58.787 47.619 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.