Multiple sequence alignment - TraesCS6B01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G236600 chr6B 100.000 4644 0 0 1 4644 408239993 408244636 0.000000e+00 8576
1 TraesCS6B01G236600 chr6D 97.125 2748 54 13 1908 4639 264445265 264448003 0.000000e+00 4614
2 TraesCS6B01G236600 chr6D 94.702 1510 57 15 411 1913 264443738 264445231 0.000000e+00 2324
3 TraesCS6B01G236600 chr6D 87.968 374 25 9 1 357 264443387 264443757 1.540000e-114 424
4 TraesCS6B01G236600 chr6A 97.277 2387 46 12 1908 4282 373116131 373118510 0.000000e+00 4030
5 TraesCS6B01G236600 chr6A 95.082 1525 46 10 399 1913 373114594 373116099 0.000000e+00 2374
6 TraesCS6B01G236600 chr6A 91.355 428 28 6 4221 4642 373118480 373118904 1.120000e-160 577
7 TraesCS6B01G236600 chr6A 89.262 298 19 6 7 292 373114195 373114491 1.230000e-95 361
8 TraesCS6B01G236600 chr6A 93.976 83 5 0 278 360 373114511 373114593 4.880000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G236600 chr6B 408239993 408244636 4643 False 8576.0 8576 100.0000 1 4644 1 chr6B.!!$F1 4643
1 TraesCS6B01G236600 chr6D 264443387 264448003 4616 False 2454.0 4614 93.2650 1 4639 3 chr6D.!!$F1 4638
2 TraesCS6B01G236600 chr6A 373114195 373118904 4709 False 1493.6 4030 93.3904 7 4642 5 chr6A.!!$F1 4635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.170339 CGACCTGTAGATGTGACGCA 59.830 55.000 0.00 0.00 0.00 5.24 F
1173 1229 0.034476 CTGCCAAGACACTGAGCTCA 59.966 55.000 17.19 17.19 0.00 4.26 F
1240 1296 1.212751 GATGGCTCCGGTGCAAAAC 59.787 57.895 28.14 13.15 34.04 2.43 F
2530 2646 0.829990 CCCATTGTATTGTTGGGGCC 59.170 55.000 0.00 0.00 45.37 5.80 F
2731 2847 7.086376 TGAGAAAACAAGATATCTTTGCAAGC 58.914 34.615 15.49 4.42 33.11 4.01 F
2833 2949 7.990886 TCTACTAACCATGTTTCACTTCAGTTT 59.009 33.333 0.00 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1265 1321 0.385029 CTCTGACAGCTCGGATCCTG 59.615 60.000 10.75 3.48 30.95 3.86 R
2530 2646 0.035176 CCAGCCCAAAACCAACCATG 59.965 55.000 0.00 0.00 0.00 3.66 R
2833 2949 0.871722 GATTTGGTGCGCTGTACACA 59.128 50.000 9.73 0.00 39.87 3.72 R
3415 3531 1.597854 CAAGACCACAGAAGCGGCA 60.598 57.895 1.45 0.00 0.00 5.69 R
3565 3681 1.956477 GCACCAACTGGAATTGTGACT 59.044 47.619 1.86 0.00 38.94 3.41 R
3994 4112 6.408206 GGCATAATTACAAGGGTAGTGAGACT 60.408 42.308 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.896479 TAGCAGTGTGCCGACCTGTA 60.896 55.000 0.00 0.00 46.52 2.74
35 36 0.532573 AGTGTGCCGACCTGTAGATG 59.467 55.000 0.00 0.00 0.00 2.90
40 41 0.525668 GCCGACCTGTAGATGTGACG 60.526 60.000 0.00 0.00 0.00 4.35
42 43 0.170339 CGACCTGTAGATGTGACGCA 59.830 55.000 0.00 0.00 0.00 5.24
59 60 1.661821 CAGGCGCCGTAGCTGATAC 60.662 63.158 23.20 0.00 36.60 2.24
69 70 4.158764 GCCGTAGCTGATACTATGAAGGAT 59.841 45.833 0.00 0.00 35.50 3.24
89 96 2.710902 CCTCCGAGACATGGACGCA 61.711 63.158 0.00 0.00 0.00 5.24
90 97 1.215382 CTCCGAGACATGGACGCAA 59.785 57.895 0.00 0.00 0.00 4.85
205 214 5.239744 TCTGCTATAACAAAACGGCAAAAGA 59.760 36.000 0.00 0.00 0.00 2.52
256 274 1.324383 TACCACAAGACTGACGCTGA 58.676 50.000 0.00 0.00 0.00 4.26
258 276 1.143305 CCACAAGACTGACGCTGAAG 58.857 55.000 0.00 0.00 0.00 3.02
265 283 3.357203 AGACTGACGCTGAAGGAATCTA 58.643 45.455 0.00 0.00 0.00 1.98
299 351 5.147162 CGTTCTTGCAAGAGGAAACAATAC 58.853 41.667 27.02 18.03 36.22 1.89
376 428 7.901874 ATTATACAACAACAACGACAACAAC 57.098 32.000 0.00 0.00 0.00 3.32
377 429 3.627732 ACAACAACAACGACAACAACA 57.372 38.095 0.00 0.00 0.00 3.33
378 430 3.966154 ACAACAACAACGACAACAACAA 58.034 36.364 0.00 0.00 0.00 2.83
379 431 3.731717 ACAACAACAACGACAACAACAAC 59.268 39.130 0.00 0.00 0.00 3.32
380 432 3.627732 ACAACAACGACAACAACAACA 57.372 38.095 0.00 0.00 0.00 3.33
381 433 3.966154 ACAACAACGACAACAACAACAA 58.034 36.364 0.00 0.00 0.00 2.83
382 434 3.731717 ACAACAACGACAACAACAACAAC 59.268 39.130 0.00 0.00 0.00 3.32
383 435 3.627732 ACAACGACAACAACAACAACA 57.372 38.095 0.00 0.00 0.00 3.33
384 436 3.966154 ACAACGACAACAACAACAACAA 58.034 36.364 0.00 0.00 0.00 2.83
385 437 3.731717 ACAACGACAACAACAACAACAAC 59.268 39.130 0.00 0.00 0.00 3.32
386 438 3.627732 ACGACAACAACAACAACAACA 57.372 38.095 0.00 0.00 0.00 3.33
387 439 3.966154 ACGACAACAACAACAACAACAA 58.034 36.364 0.00 0.00 0.00 2.83
388 440 3.731717 ACGACAACAACAACAACAACAAC 59.268 39.130 0.00 0.00 0.00 3.32
389 441 3.731216 CGACAACAACAACAACAACAACA 59.269 39.130 0.00 0.00 0.00 3.33
390 442 4.207224 CGACAACAACAACAACAACAACAA 59.793 37.500 0.00 0.00 0.00 2.83
391 443 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
392 444 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
393 445 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
394 446 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
395 447 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
396 448 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
397 449 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
413 465 1.185315 AGCCTTGTTGCTGTTGTTGT 58.815 45.000 0.00 0.00 40.90 3.32
426 478 7.686438 TGCTGTTGTTGTCATCAGTAATAAT 57.314 32.000 7.71 0.00 41.08 1.28
433 485 8.744568 TGTTGTCATCAGTAATAATTATGGCA 57.255 30.769 0.00 0.00 30.78 4.92
450 502 4.422073 TGGCACAGGAAATCCTATAGTG 57.578 45.455 11.96 11.96 46.65 2.74
451 503 3.780294 TGGCACAGGAAATCCTATAGTGT 59.220 43.478 15.71 3.66 46.65 3.55
550 602 4.561606 GGTTACTCTACACAGTGCATAACG 59.438 45.833 0.00 0.00 0.00 3.18
601 654 8.145767 AGAAGAAACATCATTTTGCTTCAATCA 58.854 29.630 6.98 0.00 34.33 2.57
626 679 9.681062 CAAAAATCCAACTACCCTAAGAAGATA 57.319 33.333 0.00 0.00 0.00 1.98
1116 1172 0.179062 CTCAGCTGCCACCTACCATC 60.179 60.000 9.47 0.00 0.00 3.51
1125 1181 2.367202 ACCTACCATCCACTGCCCG 61.367 63.158 0.00 0.00 0.00 6.13
1152 1208 1.334160 TCCGTCTGGCTAAAGTGTCA 58.666 50.000 0.00 0.00 34.14 3.58
1173 1229 0.034476 CTGCCAAGACACTGAGCTCA 59.966 55.000 17.19 17.19 0.00 4.26
1191 1247 4.988598 CACCTGGTGCTTCCGCGT 62.989 66.667 14.87 0.00 39.65 6.01
1239 1295 2.331893 CGATGGCTCCGGTGCAAAA 61.332 57.895 28.14 14.46 34.04 2.44
1240 1296 1.212751 GATGGCTCCGGTGCAAAAC 59.787 57.895 28.14 13.15 34.04 2.43
1503 1559 2.443390 ATGGGGACGTCGGTAGGG 60.443 66.667 9.92 0.00 0.00 3.53
1563 1619 1.738700 GCTGTGCTAGAGTTCTCTGGC 60.739 57.143 24.36 24.36 43.31 4.85
1695 1751 1.678728 GCTGCTGCTGGTACATGGTTA 60.679 52.381 8.53 0.00 38.20 2.85
1720 1776 7.577303 ACAGGTAACATTCCATCACAGATAAT 58.423 34.615 0.00 0.00 41.41 1.28
1721 1777 8.055181 ACAGGTAACATTCCATCACAGATAATT 58.945 33.333 0.00 0.00 41.41 1.40
1752 1808 7.667635 TGAGGTTTGTTATACCATGTCAATCAA 59.332 33.333 0.00 0.00 38.16 2.57
1812 1873 2.879103 TCAAGATCCCCACAGTTTCC 57.121 50.000 0.00 0.00 0.00 3.13
1813 1874 2.061848 TCAAGATCCCCACAGTTTCCA 58.938 47.619 0.00 0.00 0.00 3.53
1814 1875 2.649312 TCAAGATCCCCACAGTTTCCAT 59.351 45.455 0.00 0.00 0.00 3.41
1815 1876 3.019564 CAAGATCCCCACAGTTTCCATC 58.980 50.000 0.00 0.00 0.00 3.51
1816 1877 2.566746 AGATCCCCACAGTTTCCATCT 58.433 47.619 0.00 0.00 0.00 2.90
1817 1878 3.736094 AGATCCCCACAGTTTCCATCTA 58.264 45.455 0.00 0.00 0.00 1.98
1818 1879 4.310740 AGATCCCCACAGTTTCCATCTAT 58.689 43.478 0.00 0.00 0.00 1.98
1819 1880 5.476983 AGATCCCCACAGTTTCCATCTATA 58.523 41.667 0.00 0.00 0.00 1.31
1823 1884 6.980577 TCCCCACAGTTTCCATCTATAAAAT 58.019 36.000 0.00 0.00 0.00 1.82
2204 2310 7.013942 GGGAAAGTACAGAAACAACAAATAGGT 59.986 37.037 0.00 0.00 0.00 3.08
2205 2311 8.410912 GGAAAGTACAGAAACAACAAATAGGTT 58.589 33.333 0.00 0.00 0.00 3.50
2309 2424 9.874215 CATCTATTTATGCAACAGTGTTGATAG 57.126 33.333 34.65 27.93 0.00 2.08
2458 2573 6.484364 TCATAAGCATCTGTCTGGATTACA 57.516 37.500 0.00 0.00 0.00 2.41
2530 2646 0.829990 CCCATTGTATTGTTGGGGCC 59.170 55.000 0.00 0.00 45.37 5.80
2719 2835 7.599998 GCAACATGGTAAATGAGAAAACAAGAT 59.400 33.333 0.00 0.00 0.00 2.40
2731 2847 7.086376 TGAGAAAACAAGATATCTTTGCAAGC 58.914 34.615 15.49 4.42 33.11 4.01
2833 2949 7.990886 TCTACTAACCATGTTTCACTTCAGTTT 59.009 33.333 0.00 0.00 0.00 2.66
3565 3681 2.983192 TGAAATTGTGGTCTCCTGGGTA 59.017 45.455 0.00 0.00 0.00 3.69
4027 4145 9.466497 CTACCCTTGTAATTATGCCATATTGAT 57.534 33.333 0.00 0.00 0.00 2.57
4429 4582 4.305989 TGAGAAGATGGTTTTTGCACAC 57.694 40.909 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.532573 CATCTACAGGTCGGCACACT 59.467 55.000 0.00 0.00 0.00 3.55
18 19 0.246360 CACATCTACAGGTCGGCACA 59.754 55.000 0.00 0.00 0.00 4.57
40 41 3.499929 TATCAGCTACGGCGCCTGC 62.500 63.158 26.68 24.22 44.37 4.85
42 43 0.536687 TAGTATCAGCTACGGCGCCT 60.537 55.000 26.68 14.27 44.37 5.52
59 60 2.029470 GTCTCGGAGGCATCCTTCATAG 60.029 54.545 16.60 5.18 44.22 2.23
69 70 2.710902 CGTCCATGTCTCGGAGGCA 61.711 63.158 15.54 15.54 32.55 4.75
89 96 3.629398 CGGCTGCTGAGAGGAATTATTTT 59.371 43.478 1.17 0.00 0.00 1.82
90 97 3.209410 CGGCTGCTGAGAGGAATTATTT 58.791 45.455 1.17 0.00 0.00 1.40
168 177 2.487746 TAGCAGATGGGATGGTACCA 57.512 50.000 18.99 18.99 43.22 3.25
205 214 4.890088 AGCTGCATTGTGATTGTGATTTT 58.110 34.783 1.02 0.00 0.00 1.82
256 274 1.840635 GGCTGTGGTCCTAGATTCCTT 59.159 52.381 0.00 0.00 0.00 3.36
258 276 0.105039 CGGCTGTGGTCCTAGATTCC 59.895 60.000 0.00 0.00 0.00 3.01
265 283 1.071471 CAAGAACGGCTGTGGTCCT 59.929 57.895 0.00 0.00 0.00 3.85
299 351 1.415659 GAGTGGAGGACATCTCATGGG 59.584 57.143 0.00 0.00 44.19 4.00
360 412 3.627732 TGTTGTTGTTGTCGTTGTTGT 57.372 38.095 0.00 0.00 0.00 3.32
361 413 3.731216 TGTTGTTGTTGTTGTCGTTGTTG 59.269 39.130 0.00 0.00 0.00 3.33
362 414 3.966154 TGTTGTTGTTGTTGTCGTTGTT 58.034 36.364 0.00 0.00 0.00 2.83
363 415 3.627732 TGTTGTTGTTGTTGTCGTTGT 57.372 38.095 0.00 0.00 0.00 3.32
364 416 3.731216 TGTTGTTGTTGTTGTTGTCGTTG 59.269 39.130 0.00 0.00 0.00 4.10
365 417 3.966154 TGTTGTTGTTGTTGTTGTCGTT 58.034 36.364 0.00 0.00 0.00 3.85
366 418 3.627732 TGTTGTTGTTGTTGTTGTCGT 57.372 38.095 0.00 0.00 0.00 4.34
367 419 3.731216 TGTTGTTGTTGTTGTTGTTGTCG 59.269 39.130 0.00 0.00 0.00 4.35
368 420 5.005779 TGTTGTTGTTGTTGTTGTTGTTGTC 59.994 36.000 0.00 0.00 0.00 3.18
369 421 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
370 422 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
371 423 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
372 424 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
373 425 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
374 426 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
375 427 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
376 428 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
377 429 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
378 430 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
379 431 3.745458 ACAAGGCTTTGTTGTTGTTGTTG 59.255 39.130 8.63 0.00 45.01 3.33
380 432 4.001618 ACAAGGCTTTGTTGTTGTTGTT 57.998 36.364 8.63 0.00 45.01 2.83
381 433 3.676291 ACAAGGCTTTGTTGTTGTTGT 57.324 38.095 8.63 0.00 45.01 3.32
391 443 2.298411 ACAACAGCAACAAGGCTTTG 57.702 45.000 7.07 7.07 42.71 2.77
392 444 2.028203 ACAACAACAGCAACAAGGCTTT 60.028 40.909 0.00 0.00 42.71 3.51
393 445 1.550072 ACAACAACAGCAACAAGGCTT 59.450 42.857 0.00 0.00 42.71 4.35
395 447 1.135141 TGACAACAACAGCAACAAGGC 60.135 47.619 0.00 0.00 0.00 4.35
396 448 2.937469 TGACAACAACAGCAACAAGG 57.063 45.000 0.00 0.00 0.00 3.61
397 449 4.031418 TGATGACAACAACAGCAACAAG 57.969 40.909 0.00 0.00 30.79 3.16
413 465 7.744733 TCCTGTGCCATAATTATTACTGATGA 58.255 34.615 0.00 0.00 0.00 2.92
448 500 7.751348 TCACTGTTTTTGTTAATACACACACAC 59.249 33.333 0.00 0.00 32.98 3.82
449 501 7.817641 TCACTGTTTTTGTTAATACACACACA 58.182 30.769 0.00 0.00 32.98 3.72
450 502 8.178964 TCTCACTGTTTTTGTTAATACACACAC 58.821 33.333 0.00 0.00 32.98 3.82
451 503 8.270080 TCTCACTGTTTTTGTTAATACACACA 57.730 30.769 0.00 0.00 32.98 3.72
480 532 9.793252 GACATCATGCATTTTTAGTGTTCTTAT 57.207 29.630 0.00 0.00 0.00 1.73
481 533 8.243426 GGACATCATGCATTTTTAGTGTTCTTA 58.757 33.333 0.00 0.00 0.00 2.10
489 541 6.238676 CCTCTCAGGACATCATGCATTTTTAG 60.239 42.308 0.00 0.00 37.67 1.85
550 602 2.032979 CCTTTTGCCGTTTCATGTTTGC 60.033 45.455 0.00 0.00 0.00 3.68
601 654 9.682465 GTATCTTCTTAGGGTAGTTGGATTTTT 57.318 33.333 0.00 0.00 0.00 1.94
1116 1172 1.218316 GAAGTACCTCGGGCAGTGG 59.782 63.158 4.15 4.15 39.33 4.00
1152 1208 1.072159 GCTCAGTGTCTTGGCAGGT 59.928 57.895 0.00 0.00 0.00 4.00
1191 1247 0.397941 CAAAGGAGGAGAGTGTGGCA 59.602 55.000 0.00 0.00 0.00 4.92
1239 1295 4.414956 TCCCCCGAGGCATCTGGT 62.415 66.667 8.06 0.00 34.51 4.00
1240 1296 3.554342 CTCCCCCGAGGCATCTGG 61.554 72.222 1.31 1.31 34.51 3.86
1265 1321 0.385029 CTCTGACAGCTCGGATCCTG 59.615 60.000 10.75 3.48 30.95 3.86
1503 1559 1.802069 GGAGAGTCAAAGCACCAGAC 58.198 55.000 0.00 0.00 0.00 3.51
1563 1619 1.455383 GGGTGCCCATAAGGAATGCG 61.455 60.000 1.66 0.00 38.24 4.73
1695 1751 4.908601 TCTGTGATGGAATGTTACCTGT 57.091 40.909 0.00 0.00 0.00 4.00
1720 1776 8.472007 ACATGGTATAACAAACCTCAAAAGAA 57.528 30.769 0.00 0.00 37.91 2.52
1721 1777 7.721842 TGACATGGTATAACAAACCTCAAAAGA 59.278 33.333 0.00 0.00 37.91 2.52
1752 1808 1.003233 GAACCAAGGGACCTCGTCATT 59.997 52.381 0.00 0.00 33.68 2.57
1759 1815 1.657804 CTAGTGGAACCAAGGGACCT 58.342 55.000 0.00 0.00 37.80 3.85
1800 1860 8.760980 TTATTTTATAGATGGAAACTGTGGGG 57.239 34.615 0.00 0.00 0.00 4.96
1994 2100 6.790285 ACCAAATGTTGAATTTGAATCTGC 57.210 33.333 11.41 0.00 40.42 4.26
2204 2310 8.629158 AGCATTAACATTGTCTGTTCAGTTAAA 58.371 29.630 0.00 0.00 44.99 1.52
2205 2311 8.075574 CAGCATTAACATTGTCTGTTCAGTTAA 58.924 33.333 0.00 0.00 44.99 2.01
2309 2424 9.003112 CATTGAATTTTCACTCGATTGTATCAC 57.997 33.333 2.44 0.00 36.83 3.06
2530 2646 0.035176 CCAGCCCAAAACCAACCATG 59.965 55.000 0.00 0.00 0.00 3.66
2719 2835 8.040727 TGTCTGACTAATAAGCTTGCAAAGATA 58.959 33.333 9.86 0.00 45.10 1.98
2731 2847 9.755804 TGCTCAATAAGATGTCTGACTAATAAG 57.244 33.333 9.51 0.00 0.00 1.73
2833 2949 0.871722 GATTTGGTGCGCTGTACACA 59.128 50.000 9.73 0.00 39.87 3.72
3037 3153 5.942236 TGTTGCTATCTTTTCTGCTTCTGAT 59.058 36.000 0.00 0.00 0.00 2.90
3415 3531 1.597854 CAAGACCACAGAAGCGGCA 60.598 57.895 1.45 0.00 0.00 5.69
3565 3681 1.956477 GCACCAACTGGAATTGTGACT 59.044 47.619 1.86 0.00 38.94 3.41
3907 4023 9.991906 CACCTTCCGGTAGAAAATATAAAGATA 57.008 33.333 10.07 0.00 43.24 1.98
3994 4112 6.408206 GGCATAATTACAAGGGTAGTGAGACT 60.408 42.308 0.00 0.00 0.00 3.24
4380 4533 9.743057 AGACTAATTAGAGAAACAGAATGATCG 57.257 33.333 19.38 0.00 39.69 3.69
4429 4582 9.784680 AGTTAGTCATCATACAGTTAGTAAACG 57.215 33.333 0.00 0.00 40.73 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.