Multiple sequence alignment - TraesCS6B01G236300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G236300 chr6B 100.000 5139 0 0 3210 8348 405089877 405084739 0.000000e+00 9491.0
1 TraesCS6B01G236300 chr6B 100.000 1511 0 0 1538 3048 405091549 405090039 0.000000e+00 2791.0
2 TraesCS6B01G236300 chr6B 100.000 1314 0 0 1 1314 405093086 405091773 0.000000e+00 2427.0
3 TraesCS6B01G236300 chr6B 93.617 282 17 1 7042 7322 687969608 687969327 3.600000e-113 420.0
4 TraesCS6B01G236300 chr6B 93.262 282 18 1 7042 7322 157882879 157882598 1.680000e-111 414.0
5 TraesCS6B01G236300 chr6B 92.174 115 4 3 7339 7449 157882612 157882499 3.120000e-34 158.0
6 TraesCS6B01G236300 chr6B 94.872 78 4 0 7481 7558 687969234 687969157 1.140000e-23 122.0
7 TraesCS6B01G236300 chr6B 86.957 115 3 4 7339 7449 687969341 687969235 1.470000e-22 119.0
8 TraesCS6B01G236300 chr6A 95.351 2280 65 13 3233 5511 371233911 371236150 0.000000e+00 3585.0
9 TraesCS6B01G236300 chr6A 95.813 1027 23 4 7339 8348 371237876 371238899 0.000000e+00 1640.0
10 TraesCS6B01G236300 chr6A 93.059 1095 33 11 6262 7322 371236805 371237890 0.000000e+00 1561.0
11 TraesCS6B01G236300 chr6A 93.688 903 40 9 2147 3048 371232942 371233828 0.000000e+00 1336.0
12 TraesCS6B01G236300 chr6A 93.438 701 29 8 631 1314 371231554 371232254 0.000000e+00 1024.0
13 TraesCS6B01G236300 chr6A 96.025 629 23 2 5512 6139 371236180 371236807 0.000000e+00 1022.0
14 TraesCS6B01G236300 chr6A 89.181 647 22 9 1540 2172 371232310 371232922 0.000000e+00 763.0
15 TraesCS6B01G236300 chr6D 93.496 2260 101 19 3254 5511 264008240 264006025 0.000000e+00 3317.0
16 TraesCS6B01G236300 chr6D 90.613 1044 21 24 7339 8348 264004338 264003338 0.000000e+00 1314.0
17 TraesCS6B01G236300 chr6D 88.748 1102 75 24 6262 7322 264005417 264004324 0.000000e+00 1303.0
18 TraesCS6B01G236300 chr6D 94.894 705 28 6 2309 3005 264009158 264008454 0.000000e+00 1096.0
19 TraesCS6B01G236300 chr6D 94.343 601 15 6 590 1181 264011762 264011172 0.000000e+00 904.0
20 TraesCS6B01G236300 chr6D 94.932 513 22 4 5628 6139 264005924 264005415 0.000000e+00 800.0
21 TraesCS6B01G236300 chr6D 90.530 623 20 17 1538 2159 264010818 264010234 0.000000e+00 787.0
22 TraesCS6B01G236300 chr6D 95.429 350 15 1 3522 3871 264009683 264009335 2.630000e-154 556.0
23 TraesCS6B01G236300 chr6D 93.939 132 8 0 6133 6264 289890248 289890379 5.110000e-47 200.0
24 TraesCS6B01G236300 chr6D 97.059 34 0 1 517 550 8255961 8255929 1.000000e-03 56.5
25 TraesCS6B01G236300 chr7B 94.182 550 30 1 1 550 619436813 619437360 0.000000e+00 837.0
26 TraesCS6B01G236300 chr7B 76.294 367 59 17 81 423 42402441 42402079 4.010000e-38 171.0
27 TraesCS6B01G236300 chr7B 92.857 42 2 1 513 554 726742805 726742845 9.050000e-05 60.2
28 TraesCS6B01G236300 chr2B 94.259 540 30 1 19 558 154753096 154753634 0.000000e+00 824.0
29 TraesCS6B01G236300 chr2B 80.562 890 131 29 4493 5369 505499242 505498382 0.000000e+00 647.0
30 TraesCS6B01G236300 chr2B 93.727 271 17 0 7052 7322 560726821 560727091 2.810000e-109 407.0
31 TraesCS6B01G236300 chr2B 88.718 195 22 0 6367 6561 505497765 505497571 1.080000e-58 239.0
32 TraesCS6B01G236300 chr2B 92.174 115 4 3 7339 7449 560727077 560727190 3.120000e-34 158.0
33 TraesCS6B01G236300 chr2B 92.500 80 4 2 7478 7555 560727188 560727267 6.850000e-21 113.0
34 TraesCS6B01G236300 chr2B 100.000 29 0 0 1 29 154727102 154727130 4.000000e-03 54.7
35 TraesCS6B01G236300 chr2D 80.449 890 133 29 4493 5369 428561866 428561005 7.060000e-180 641.0
36 TraesCS6B01G236300 chr2D 89.175 194 21 0 6368 6561 428560549 428560356 8.370000e-60 243.0
37 TraesCS6B01G236300 chr2A 80.090 889 138 28 4493 5369 559112564 559113425 7.110000e-175 625.0
38 TraesCS6B01G236300 chr2A 88.889 198 22 0 6364 6561 559113882 559114079 2.330000e-60 244.0
39 TraesCS6B01G236300 chr2A 91.216 148 13 0 6129 6276 579680606 579680459 1.420000e-47 202.0
40 TraesCS6B01G236300 chr2A 93.939 132 8 0 6133 6264 223772813 223772944 5.110000e-47 200.0
41 TraesCS6B01G236300 chr4A 90.347 404 33 4 1 400 290414990 290415391 7.420000e-145 525.0
42 TraesCS6B01G236300 chr4A 100.000 28 0 0 7774 7801 730277222 730277249 1.500000e-02 52.8
43 TraesCS6B01G236300 chr4A 100.000 28 0 0 7774 7801 730883594 730883621 1.500000e-02 52.8
44 TraesCS6B01G236300 chr1A 90.071 282 24 3 7042 7322 425074064 425073786 6.160000e-96 363.0
45 TraesCS6B01G236300 chr1A 89.716 282 25 3 7042 7322 406654393 406654671 2.870000e-94 357.0
46 TraesCS6B01G236300 chr1A 91.667 144 12 0 6133 6276 165453994 165454137 5.110000e-47 200.0
47 TraesCS6B01G236300 chr1A 93.694 111 7 0 7339 7449 406654657 406654767 5.180000e-37 167.0
48 TraesCS6B01G236300 chr1A 100.000 29 0 0 522 550 250064488 250064516 4.000000e-03 54.7
49 TraesCS6B01G236300 chr1A 100.000 28 0 0 7774 7801 138320910 138320937 1.500000e-02 52.8
50 TraesCS6B01G236300 chr1A 100.000 28 0 0 7774 7801 575361729 575361756 1.500000e-02 52.8
51 TraesCS6B01G236300 chr4B 94.776 134 7 0 6135 6268 55925902 55926035 8.490000e-50 209.0
52 TraesCS6B01G236300 chr4D 91.667 144 12 0 6133 6276 127647634 127647491 5.110000e-47 200.0
53 TraesCS6B01G236300 chr4D 100.000 30 0 0 7772 7801 462840885 462840856 1.000000e-03 56.5
54 TraesCS6B01G236300 chr3D 93.939 132 8 0 6133 6264 70929716 70929847 5.110000e-47 200.0
55 TraesCS6B01G236300 chr3D 100.000 32 0 0 519 550 520355338 520355307 9.050000e-05 60.2
56 TraesCS6B01G236300 chr1D 91.667 144 12 0 6133 6276 336626989 336626846 5.110000e-47 200.0
57 TraesCS6B01G236300 chr1D 83.333 120 20 0 431 550 468337091 468337210 2.460000e-20 111.0
58 TraesCS6B01G236300 chr1B 89.308 159 13 4 6130 6288 430146374 430146220 6.610000e-46 196.0
59 TraesCS6B01G236300 chr1B 96.774 31 1 0 7774 7804 636877243 636877213 1.500000e-02 52.8
60 TraesCS6B01G236300 chr5B 83.616 177 25 4 248 423 491062765 491062592 6.700000e-36 163.0
61 TraesCS6B01G236300 chr5B 100.000 31 0 0 7774 7804 101418294 101418264 3.250000e-04 58.4
62 TraesCS6B01G236300 chr5B 100.000 31 0 0 520 550 236273893 236273923 3.250000e-04 58.4
63 TraesCS6B01G236300 chr5D 78.363 171 29 5 248 413 486927456 486927623 4.120000e-18 104.0
64 TraesCS6B01G236300 chr5A 75.287 174 35 5 253 419 211609088 211608916 8.990000e-10 76.8
65 TraesCS6B01G236300 chr3A 100.000 29 0 0 521 549 53741565 53741537 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G236300 chr6B 405084739 405093086 8347 True 4903.000000 9491 100.000000 1 8348 3 chr6B.!!$R2 8347
1 TraesCS6B01G236300 chr6A 371231554 371238899 7345 False 1561.571429 3585 93.793571 631 8348 7 chr6A.!!$F1 7717
2 TraesCS6B01G236300 chr6D 264003338 264011762 8424 True 1259.625000 3317 92.873125 590 8348 8 chr6D.!!$R2 7758
3 TraesCS6B01G236300 chr7B 619436813 619437360 547 False 837.000000 837 94.182000 1 550 1 chr7B.!!$F1 549
4 TraesCS6B01G236300 chr2B 154753096 154753634 538 False 824.000000 824 94.259000 19 558 1 chr2B.!!$F2 539
5 TraesCS6B01G236300 chr2B 505497571 505499242 1671 True 443.000000 647 84.640000 4493 6561 2 chr2B.!!$R1 2068
6 TraesCS6B01G236300 chr2D 428560356 428561866 1510 True 442.000000 641 84.812000 4493 6561 2 chr2D.!!$R1 2068
7 TraesCS6B01G236300 chr2A 559112564 559114079 1515 False 434.500000 625 84.489500 4493 6561 2 chr2A.!!$F2 2068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 532 0.100503 AATATTTCCCGCAGCAACGC 59.899 50.000 0.00 0.00 0.00 4.84 F
546 547 0.179094 AACGCGCGGGAAATCATCTA 60.179 50.000 35.22 0.00 0.00 1.98 F
722 738 0.253207 ACCCACCCAAAACCCCAAAA 60.253 50.000 0.00 0.00 0.00 2.44 F
723 739 0.919710 CCCACCCAAAACCCCAAAAA 59.080 50.000 0.00 0.00 0.00 1.94 F
1229 1247 1.002033 GCATTCACTTGGATCCGATGC 60.002 52.381 7.39 8.00 0.00 3.91 F
1747 1786 1.213537 CAAACAATGCCTGCCCTCG 59.786 57.895 0.00 0.00 0.00 4.63 F
2187 2269 1.804396 TTTGCATGGAAGGTGGCACG 61.804 55.000 12.17 0.00 35.74 5.34 F
3548 4562 1.580845 GCTGTGGCTGTAGCAACTGG 61.581 60.000 16.76 9.43 45.12 4.00 F
4130 5145 1.002430 GACTCCATTCTGCTGTGGACA 59.998 52.381 0.00 0.00 39.51 4.02 F
4141 5156 1.337823 GCTGTGGACAGACGTACCAAT 60.338 52.381 11.06 0.00 46.59 3.16 F
5573 6700 0.662085 GCTAGCATTTCCTCTGCAGC 59.338 55.000 10.63 0.00 42.15 5.25 F
6152 7351 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1807 0.039472 CCATGGATCCACAACCACCA 59.961 55.000 18.99 0.00 39.06 4.17 R
1769 1808 0.331278 TCCATGGATCCACAACCACC 59.669 55.000 18.99 0.00 39.06 4.61 R
2357 3326 1.134367 AGCACACATCTCAATGCATGC 59.866 47.619 11.82 11.82 42.91 4.06 R
2675 3647 1.212935 GCACATTACCAGTCCCTCCAT 59.787 52.381 0.00 0.00 0.00 3.41 R
3016 3992 1.132643 CCGCTGTGTGTAGACCTCTAC 59.867 57.143 5.63 5.63 46.78 2.59 R
3019 3995 1.446272 GCCGCTGTGTGTAGACCTC 60.446 63.158 0.00 0.00 0.00 3.85 R
3904 4919 0.250727 TAACCTTGCCTCTGTGGTGC 60.251 55.000 0.00 0.00 38.35 5.01 R
4375 5390 2.376808 AAGAGTCAGTCATTCAGGCG 57.623 50.000 0.00 0.00 0.00 5.52 R
5554 6681 0.662085 GCTGCAGAGGAAATGCTAGC 59.338 55.000 20.43 8.10 44.17 3.42 R
6136 7335 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73 R
7203 8533 1.134491 GGCTGCCCAGTACGATTTACT 60.134 52.381 7.66 0.00 0.00 2.24 R
8117 9475 0.880278 TGGCAACTTCAGTGCGAGTC 60.880 55.000 0.00 0.00 37.61 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 9.811995 GTTTTGTAGGGTTATTTTATCCAATCC 57.188 33.333 0.00 0.00 0.00 3.01
178 179 9.548631 TTTTGTAGGGTTATTTTATCCAATCCA 57.451 29.630 0.00 0.00 0.00 3.41
179 180 9.722317 TTTGTAGGGTTATTTTATCCAATCCAT 57.278 29.630 0.00 0.00 0.00 3.41
184 185 9.897040 AGGGTTATTTTATCCAATCCATAATGT 57.103 29.630 0.00 0.00 0.00 2.71
250 251 9.886132 ACTAATGATATTTGTTTACCTTCGACT 57.114 29.630 0.00 0.00 0.00 4.18
255 256 8.609176 TGATATTTGTTTACCTTCGACTAATGC 58.391 33.333 0.00 0.00 0.00 3.56
256 257 5.616488 TTTGTTTACCTTCGACTAATGCC 57.384 39.130 0.00 0.00 0.00 4.40
257 258 4.274602 TGTTTACCTTCGACTAATGCCA 57.725 40.909 0.00 0.00 0.00 4.92
258 259 4.839121 TGTTTACCTTCGACTAATGCCAT 58.161 39.130 0.00 0.00 0.00 4.40
259 260 5.250200 TGTTTACCTTCGACTAATGCCATT 58.750 37.500 0.00 0.00 0.00 3.16
260 261 5.708230 TGTTTACCTTCGACTAATGCCATTT 59.292 36.000 0.00 0.00 0.00 2.32
261 262 5.811399 TTACCTTCGACTAATGCCATTTG 57.189 39.130 0.00 0.00 0.00 2.32
262 263 3.686016 ACCTTCGACTAATGCCATTTGT 58.314 40.909 4.17 4.17 0.00 2.83
263 264 4.079253 ACCTTCGACTAATGCCATTTGTT 58.921 39.130 5.99 0.00 0.00 2.83
264 265 4.522789 ACCTTCGACTAATGCCATTTGTTT 59.477 37.500 5.99 0.00 0.00 2.83
265 266 5.708230 ACCTTCGACTAATGCCATTTGTTTA 59.292 36.000 5.99 0.00 0.00 2.01
266 267 6.027749 CCTTCGACTAATGCCATTTGTTTAC 58.972 40.000 5.99 0.00 0.00 2.01
267 268 5.554822 TCGACTAATGCCATTTGTTTACC 57.445 39.130 5.99 0.00 0.00 2.85
268 269 5.250200 TCGACTAATGCCATTTGTTTACCT 58.750 37.500 5.99 0.00 0.00 3.08
269 270 5.708230 TCGACTAATGCCATTTGTTTACCTT 59.292 36.000 5.99 0.00 0.00 3.50
270 271 6.027749 CGACTAATGCCATTTGTTTACCTTC 58.972 40.000 5.99 0.00 0.00 3.46
271 272 6.128007 CGACTAATGCCATTTGTTTACCTTCT 60.128 38.462 5.99 0.00 0.00 2.85
272 273 7.065324 CGACTAATGCCATTTGTTTACCTTCTA 59.935 37.037 5.99 0.00 0.00 2.10
273 274 8.051901 ACTAATGCCATTTGTTTACCTTCTAC 57.948 34.615 0.00 0.00 0.00 2.59
274 275 7.888546 ACTAATGCCATTTGTTTACCTTCTACT 59.111 33.333 0.00 0.00 0.00 2.57
275 276 5.957842 TGCCATTTGTTTACCTTCTACTG 57.042 39.130 0.00 0.00 0.00 2.74
276 277 5.381757 TGCCATTTGTTTACCTTCTACTGT 58.618 37.500 0.00 0.00 0.00 3.55
277 278 5.240623 TGCCATTTGTTTACCTTCTACTGTG 59.759 40.000 0.00 0.00 0.00 3.66
278 279 5.335661 GCCATTTGTTTACCTTCTACTGTGG 60.336 44.000 0.00 0.00 0.00 4.17
279 280 5.183140 CCATTTGTTTACCTTCTACTGTGGG 59.817 44.000 0.00 0.00 0.00 4.61
280 281 5.633655 TTTGTTTACCTTCTACTGTGGGA 57.366 39.130 0.00 0.00 0.00 4.37
281 282 5.836024 TTGTTTACCTTCTACTGTGGGAT 57.164 39.130 0.00 0.00 0.00 3.85
282 283 5.160607 TGTTTACCTTCTACTGTGGGATG 57.839 43.478 0.00 0.00 0.00 3.51
283 284 4.841813 TGTTTACCTTCTACTGTGGGATGA 59.158 41.667 0.00 0.00 0.00 2.92
284 285 5.308497 TGTTTACCTTCTACTGTGGGATGAA 59.692 40.000 0.00 0.00 0.00 2.57
285 286 6.012858 TGTTTACCTTCTACTGTGGGATGAAT 60.013 38.462 0.00 0.00 0.00 2.57
286 287 4.762289 ACCTTCTACTGTGGGATGAATC 57.238 45.455 0.00 0.00 0.00 2.52
287 288 4.104086 ACCTTCTACTGTGGGATGAATCA 58.896 43.478 0.00 0.00 0.00 2.57
288 289 4.536090 ACCTTCTACTGTGGGATGAATCAA 59.464 41.667 0.00 0.00 0.00 2.57
289 290 5.014123 ACCTTCTACTGTGGGATGAATCAAA 59.986 40.000 0.00 0.00 0.00 2.69
290 291 5.587844 CCTTCTACTGTGGGATGAATCAAAG 59.412 44.000 0.00 0.00 0.00 2.77
291 292 5.762179 TCTACTGTGGGATGAATCAAAGT 57.238 39.130 0.00 0.00 0.00 2.66
292 293 6.867519 TCTACTGTGGGATGAATCAAAGTA 57.132 37.500 0.00 0.00 0.00 2.24
293 294 7.252612 TCTACTGTGGGATGAATCAAAGTAA 57.747 36.000 0.00 0.00 0.00 2.24
294 295 7.685481 TCTACTGTGGGATGAATCAAAGTAAA 58.315 34.615 0.00 0.00 0.00 2.01
295 296 8.328758 TCTACTGTGGGATGAATCAAAGTAAAT 58.671 33.333 0.00 0.00 0.00 1.40
296 297 7.161773 ACTGTGGGATGAATCAAAGTAAATG 57.838 36.000 0.00 0.00 0.00 2.32
297 298 6.721208 ACTGTGGGATGAATCAAAGTAAATGT 59.279 34.615 0.00 0.00 0.00 2.71
298 299 7.888021 ACTGTGGGATGAATCAAAGTAAATGTA 59.112 33.333 0.00 0.00 0.00 2.29
299 300 8.050778 TGTGGGATGAATCAAAGTAAATGTAC 57.949 34.615 0.00 0.00 0.00 2.90
300 301 7.667635 TGTGGGATGAATCAAAGTAAATGTACA 59.332 33.333 0.00 0.00 32.12 2.90
301 302 7.968405 GTGGGATGAATCAAAGTAAATGTACAC 59.032 37.037 0.00 0.00 32.12 2.90
302 303 7.148323 TGGGATGAATCAAAGTAAATGTACACG 60.148 37.037 0.00 0.00 32.12 4.49
303 304 7.186804 GGATGAATCAAAGTAAATGTACACGG 58.813 38.462 0.00 0.00 32.12 4.94
304 305 6.489127 TGAATCAAAGTAAATGTACACGGG 57.511 37.500 0.00 0.00 32.12 5.28
305 306 6.231951 TGAATCAAAGTAAATGTACACGGGA 58.768 36.000 0.00 0.00 32.12 5.14
306 307 6.370442 TGAATCAAAGTAAATGTACACGGGAG 59.630 38.462 0.00 0.00 32.12 4.30
308 309 5.613329 TCAAAGTAAATGTACACGGGAGTT 58.387 37.500 0.00 0.00 44.67 3.01
309 310 5.697633 TCAAAGTAAATGTACACGGGAGTTC 59.302 40.000 0.00 0.00 44.67 3.01
310 311 5.479124 AAGTAAATGTACACGGGAGTTCT 57.521 39.130 0.00 0.00 44.67 3.01
311 312 5.479124 AGTAAATGTACACGGGAGTTCTT 57.521 39.130 0.00 0.00 44.67 2.52
312 313 6.594788 AGTAAATGTACACGGGAGTTCTTA 57.405 37.500 0.00 0.00 44.67 2.10
313 314 7.179076 AGTAAATGTACACGGGAGTTCTTAT 57.821 36.000 0.00 0.00 44.67 1.73
314 315 7.039882 AGTAAATGTACACGGGAGTTCTTATG 58.960 38.462 0.00 0.00 44.67 1.90
315 316 3.880047 TGTACACGGGAGTTCTTATGG 57.120 47.619 0.00 0.00 44.67 2.74
316 317 3.433343 TGTACACGGGAGTTCTTATGGA 58.567 45.455 0.00 0.00 44.67 3.41
317 318 3.446161 TGTACACGGGAGTTCTTATGGAG 59.554 47.826 0.00 0.00 44.67 3.86
318 319 2.816411 ACACGGGAGTTCTTATGGAGA 58.184 47.619 0.00 0.00 44.67 3.71
319 320 3.375699 ACACGGGAGTTCTTATGGAGAT 58.624 45.455 0.00 0.00 44.67 2.75
320 321 3.775316 ACACGGGAGTTCTTATGGAGATT 59.225 43.478 0.00 0.00 44.67 2.40
321 322 4.960469 ACACGGGAGTTCTTATGGAGATTA 59.040 41.667 0.00 0.00 44.67 1.75
322 323 5.163437 ACACGGGAGTTCTTATGGAGATTAC 60.163 44.000 0.00 0.00 44.67 1.89
323 324 4.960469 ACGGGAGTTCTTATGGAGATTACA 59.040 41.667 0.00 0.00 43.33 2.41
324 325 5.163437 ACGGGAGTTCTTATGGAGATTACAC 60.163 44.000 0.00 0.00 43.33 2.90
325 326 5.163447 CGGGAGTTCTTATGGAGATTACACA 60.163 44.000 0.00 0.00 33.49 3.72
326 327 6.463049 CGGGAGTTCTTATGGAGATTACACAT 60.463 42.308 0.00 0.00 33.49 3.21
327 328 7.255836 CGGGAGTTCTTATGGAGATTACACATA 60.256 40.741 0.00 0.00 33.49 2.29
328 329 8.091449 GGGAGTTCTTATGGAGATTACACATAG 58.909 40.741 0.00 0.00 33.49 2.23
329 330 8.643324 GGAGTTCTTATGGAGATTACACATAGT 58.357 37.037 0.00 0.00 33.49 2.12
330 331 9.685828 GAGTTCTTATGGAGATTACACATAGTC 57.314 37.037 0.00 0.00 33.49 2.59
331 332 9.201989 AGTTCTTATGGAGATTACACATAGTCA 57.798 33.333 0.00 0.00 33.49 3.41
332 333 9.817809 GTTCTTATGGAGATTACACATAGTCAA 57.182 33.333 0.00 0.00 33.49 3.18
334 335 8.642432 TCTTATGGAGATTACACATAGTCAAGG 58.358 37.037 0.00 0.00 0.00 3.61
335 336 5.023533 TGGAGATTACACATAGTCAAGGC 57.976 43.478 0.00 0.00 0.00 4.35
336 337 4.716784 TGGAGATTACACATAGTCAAGGCT 59.283 41.667 0.00 0.00 0.00 4.58
337 338 5.163405 TGGAGATTACACATAGTCAAGGCTC 60.163 44.000 0.00 0.00 0.00 4.70
338 339 4.938080 AGATTACACATAGTCAAGGCTCG 58.062 43.478 0.00 0.00 0.00 5.03
339 340 3.520290 TTACACATAGTCAAGGCTCGG 57.480 47.619 0.00 0.00 0.00 4.63
340 341 0.537188 ACACATAGTCAAGGCTCGGG 59.463 55.000 0.00 0.00 0.00 5.14
341 342 0.537188 CACATAGTCAAGGCTCGGGT 59.463 55.000 0.00 0.00 0.00 5.28
342 343 0.824759 ACATAGTCAAGGCTCGGGTC 59.175 55.000 0.00 0.00 0.00 4.46
343 344 0.824109 CATAGTCAAGGCTCGGGTCA 59.176 55.000 0.00 0.00 0.00 4.02
344 345 1.414181 CATAGTCAAGGCTCGGGTCAT 59.586 52.381 0.00 0.00 0.00 3.06
345 346 2.447408 TAGTCAAGGCTCGGGTCATA 57.553 50.000 0.00 0.00 0.00 2.15
346 347 1.568504 AGTCAAGGCTCGGGTCATAA 58.431 50.000 0.00 0.00 0.00 1.90
347 348 1.207329 AGTCAAGGCTCGGGTCATAAC 59.793 52.381 0.00 0.00 0.00 1.89
348 349 1.207329 GTCAAGGCTCGGGTCATAACT 59.793 52.381 0.00 0.00 0.00 2.24
349 350 1.906574 TCAAGGCTCGGGTCATAACTT 59.093 47.619 0.00 0.00 0.00 2.66
350 351 2.304761 TCAAGGCTCGGGTCATAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
351 352 3.081804 CAAGGCTCGGGTCATAACTTTT 58.918 45.455 0.00 0.00 0.00 2.27
352 353 2.711542 AGGCTCGGGTCATAACTTTTG 58.288 47.619 0.00 0.00 0.00 2.44
353 354 2.039879 AGGCTCGGGTCATAACTTTTGT 59.960 45.455 0.00 0.00 0.00 2.83
354 355 2.161609 GGCTCGGGTCATAACTTTTGTG 59.838 50.000 0.00 0.00 0.00 3.33
355 356 3.071479 GCTCGGGTCATAACTTTTGTGA 58.929 45.455 0.00 0.00 0.00 3.58
356 357 3.689649 GCTCGGGTCATAACTTTTGTGAT 59.310 43.478 0.00 0.00 33.30 3.06
357 358 4.437390 GCTCGGGTCATAACTTTTGTGATG 60.437 45.833 0.00 0.00 41.64 3.07
358 359 4.900684 TCGGGTCATAACTTTTGTGATGA 58.099 39.130 0.00 0.00 45.56 2.92
372 373 9.950680 ACTTTTGTGATGATGTTTTAGTTGTAG 57.049 29.630 0.00 0.00 0.00 2.74
373 374 8.795786 TTTTGTGATGATGTTTTAGTTGTAGC 57.204 30.769 0.00 0.00 0.00 3.58
374 375 7.744087 TTGTGATGATGTTTTAGTTGTAGCT 57.256 32.000 0.00 0.00 0.00 3.32
375 376 7.744087 TGTGATGATGTTTTAGTTGTAGCTT 57.256 32.000 0.00 0.00 0.00 3.74
376 377 7.584108 TGTGATGATGTTTTAGTTGTAGCTTG 58.416 34.615 0.00 0.00 0.00 4.01
377 378 7.443879 TGTGATGATGTTTTAGTTGTAGCTTGA 59.556 33.333 0.00 0.00 0.00 3.02
378 379 8.289618 GTGATGATGTTTTAGTTGTAGCTTGAA 58.710 33.333 0.00 0.00 0.00 2.69
379 380 8.845227 TGATGATGTTTTAGTTGTAGCTTGAAA 58.155 29.630 0.00 0.00 0.00 2.69
380 381 9.334693 GATGATGTTTTAGTTGTAGCTTGAAAG 57.665 33.333 0.00 0.00 0.00 2.62
381 382 8.220755 TGATGTTTTAGTTGTAGCTTGAAAGT 57.779 30.769 0.00 0.00 0.00 2.66
382 383 8.682710 TGATGTTTTAGTTGTAGCTTGAAAGTT 58.317 29.630 0.00 0.00 0.00 2.66
383 384 9.516314 GATGTTTTAGTTGTAGCTTGAAAGTTT 57.484 29.630 0.00 0.00 0.00 2.66
384 385 9.869757 ATGTTTTAGTTGTAGCTTGAAAGTTTT 57.130 25.926 0.00 0.00 0.00 2.43
385 386 9.349145 TGTTTTAGTTGTAGCTTGAAAGTTTTC 57.651 29.630 0.00 0.00 37.69 2.29
386 387 9.569167 GTTTTAGTTGTAGCTTGAAAGTTTTCT 57.431 29.630 0.00 0.00 38.02 2.52
388 389 9.783256 TTTAGTTGTAGCTTGAAAGTTTTCTTC 57.217 29.630 0.00 0.00 39.48 2.87
389 390 7.631717 AGTTGTAGCTTGAAAGTTTTCTTCT 57.368 32.000 0.00 3.64 39.48 2.85
390 391 8.732746 AGTTGTAGCTTGAAAGTTTTCTTCTA 57.267 30.769 0.00 2.87 39.48 2.10
391 392 9.343539 AGTTGTAGCTTGAAAGTTTTCTTCTAT 57.656 29.630 0.00 0.00 39.48 1.98
392 393 9.952188 GTTGTAGCTTGAAAGTTTTCTTCTATT 57.048 29.630 0.00 0.00 39.48 1.73
393 394 9.950680 TTGTAGCTTGAAAGTTTTCTTCTATTG 57.049 29.630 0.00 0.00 39.48 1.90
394 395 8.076178 TGTAGCTTGAAAGTTTTCTTCTATTGC 58.924 33.333 0.00 0.00 39.48 3.56
395 396 7.042797 AGCTTGAAAGTTTTCTTCTATTGCA 57.957 32.000 6.21 0.00 39.48 4.08
396 397 7.144000 AGCTTGAAAGTTTTCTTCTATTGCAG 58.856 34.615 6.21 0.00 39.48 4.41
397 398 7.013655 AGCTTGAAAGTTTTCTTCTATTGCAGA 59.986 33.333 6.21 0.00 39.48 4.26
398 399 7.649306 GCTTGAAAGTTTTCTTCTATTGCAGAA 59.351 33.333 6.21 0.00 41.27 3.02
406 407 3.610040 TTCTATTGCAGAAGAAGCGGA 57.390 42.857 8.33 0.00 38.39 5.54
407 408 3.170791 TCTATTGCAGAAGAAGCGGAG 57.829 47.619 0.00 0.00 33.85 4.63
408 409 2.159043 TCTATTGCAGAAGAAGCGGAGG 60.159 50.000 0.00 0.00 33.85 4.30
409 410 0.326264 ATTGCAGAAGAAGCGGAGGT 59.674 50.000 0.00 0.00 44.60 3.85
410 411 0.603707 TTGCAGAAGAAGCGGAGGTG 60.604 55.000 0.00 0.00 39.47 4.00
411 412 1.743252 GCAGAAGAAGCGGAGGTGG 60.743 63.158 0.00 0.00 39.47 4.61
412 413 1.674057 CAGAAGAAGCGGAGGTGGT 59.326 57.895 0.00 0.00 39.47 4.16
413 414 0.895530 CAGAAGAAGCGGAGGTGGTA 59.104 55.000 0.00 0.00 39.47 3.25
414 415 1.134965 CAGAAGAAGCGGAGGTGGTAG 60.135 57.143 0.00 0.00 39.47 3.18
415 416 0.460459 GAAGAAGCGGAGGTGGTAGC 60.460 60.000 0.00 0.00 39.47 3.58
416 417 1.900545 AAGAAGCGGAGGTGGTAGCC 61.901 60.000 0.00 0.00 39.47 3.93
417 418 2.284699 AAGCGGAGGTGGTAGCCT 60.285 61.111 0.00 0.00 42.53 4.58
418 419 1.001248 AAGCGGAGGTGGTAGCCTA 59.999 57.895 0.00 0.00 39.34 3.93
419 420 0.616679 AAGCGGAGGTGGTAGCCTAA 60.617 55.000 0.00 0.00 39.34 2.69
420 421 0.616679 AGCGGAGGTGGTAGCCTAAA 60.617 55.000 0.00 0.00 39.34 1.85
421 422 0.468648 GCGGAGGTGGTAGCCTAAAT 59.531 55.000 0.00 0.00 39.34 1.40
422 423 1.690352 GCGGAGGTGGTAGCCTAAATA 59.310 52.381 0.00 0.00 39.34 1.40
423 424 2.547430 GCGGAGGTGGTAGCCTAAATAC 60.547 54.545 0.00 0.00 39.34 1.89
424 425 2.963782 CGGAGGTGGTAGCCTAAATACT 59.036 50.000 0.00 0.00 39.34 2.12
425 426 4.147321 CGGAGGTGGTAGCCTAAATACTA 58.853 47.826 0.00 0.00 39.34 1.82
426 427 4.771054 CGGAGGTGGTAGCCTAAATACTAT 59.229 45.833 0.00 0.00 39.34 2.12
427 428 5.245526 CGGAGGTGGTAGCCTAAATACTATT 59.754 44.000 0.00 0.00 39.34 1.73
428 429 6.465084 GGAGGTGGTAGCCTAAATACTATTG 58.535 44.000 0.00 0.00 39.34 1.90
429 430 6.042897 GGAGGTGGTAGCCTAAATACTATTGT 59.957 42.308 0.00 0.00 39.34 2.71
430 431 7.419865 GGAGGTGGTAGCCTAAATACTATTGTT 60.420 40.741 0.00 0.00 39.34 2.83
431 432 7.280356 AGGTGGTAGCCTAAATACTATTGTTG 58.720 38.462 0.00 0.00 37.04 3.33
432 433 7.052248 GGTGGTAGCCTAAATACTATTGTTGT 58.948 38.462 0.00 0.00 0.00 3.32
433 434 7.226128 GGTGGTAGCCTAAATACTATTGTTGTC 59.774 40.741 0.00 0.00 0.00 3.18
434 435 7.767198 GTGGTAGCCTAAATACTATTGTTGTCA 59.233 37.037 0.00 0.00 0.00 3.58
435 436 8.322828 TGGTAGCCTAAATACTATTGTTGTCAA 58.677 33.333 0.00 0.00 37.98 3.18
436 437 9.169592 GGTAGCCTAAATACTATTGTTGTCAAA 57.830 33.333 0.00 0.00 37.11 2.69
499 500 9.945904 AAAAGGGTAAATTTGTGAAGTAAAACA 57.054 25.926 0.00 0.00 0.00 2.83
500 501 8.936070 AAGGGTAAATTTGTGAAGTAAAACAC 57.064 30.769 0.00 0.00 37.51 3.32
501 502 8.301252 AGGGTAAATTTGTGAAGTAAAACACT 57.699 30.769 0.00 0.00 40.05 3.55
502 503 9.411189 AGGGTAAATTTGTGAAGTAAAACACTA 57.589 29.630 0.00 0.00 36.04 2.74
511 512 8.795786 TGTGAAGTAAAACACTAATTTCATGC 57.204 30.769 0.00 0.00 36.04 4.06
512 513 8.409371 TGTGAAGTAAAACACTAATTTCATGCA 58.591 29.630 0.00 0.00 36.04 3.96
513 514 9.243637 GTGAAGTAAAACACTAATTTCATGCAA 57.756 29.630 0.00 0.00 36.04 4.08
514 515 9.979578 TGAAGTAAAACACTAATTTCATGCAAT 57.020 25.926 0.00 0.00 36.04 3.56
521 522 8.947055 AACACTAATTTCATGCAATATTTCCC 57.053 30.769 0.00 0.00 0.00 3.97
522 523 7.202526 ACACTAATTTCATGCAATATTTCCCG 58.797 34.615 0.00 0.00 0.00 5.14
523 524 6.144402 CACTAATTTCATGCAATATTTCCCGC 59.856 38.462 0.00 0.00 0.00 6.13
524 525 4.669206 ATTTCATGCAATATTTCCCGCA 57.331 36.364 0.00 1.16 39.01 5.69
525 526 3.713858 TTCATGCAATATTTCCCGCAG 57.286 42.857 0.00 0.00 37.88 5.18
526 527 1.337703 TCATGCAATATTTCCCGCAGC 59.662 47.619 0.00 0.00 37.88 5.25
527 528 1.067364 CATGCAATATTTCCCGCAGCA 59.933 47.619 0.00 1.40 37.88 4.41
528 529 1.180907 TGCAATATTTCCCGCAGCAA 58.819 45.000 0.00 0.00 0.00 3.91
529 530 1.135141 TGCAATATTTCCCGCAGCAAC 60.135 47.619 0.00 0.00 0.00 4.17
530 531 1.826327 CAATATTTCCCGCAGCAACG 58.174 50.000 0.00 0.00 0.00 4.10
531 532 0.100503 AATATTTCCCGCAGCAACGC 59.899 50.000 0.00 0.00 0.00 4.84
542 543 4.096558 GCAACGCGCGGGAAATCA 62.097 61.111 35.22 0.00 0.00 2.57
543 544 2.791256 CAACGCGCGGGAAATCAT 59.209 55.556 35.22 7.19 0.00 2.45
544 545 1.297598 CAACGCGCGGGAAATCATC 60.298 57.895 35.22 0.00 0.00 2.92
545 546 1.449601 AACGCGCGGGAAATCATCT 60.450 52.632 35.22 5.42 0.00 2.90
546 547 0.179094 AACGCGCGGGAAATCATCTA 60.179 50.000 35.22 0.00 0.00 1.98
547 548 0.597637 ACGCGCGGGAAATCATCTAG 60.598 55.000 35.22 0.47 0.00 2.43
548 549 0.597637 CGCGCGGGAAATCATCTAGT 60.598 55.000 24.84 0.00 0.00 2.57
549 550 1.583054 GCGCGGGAAATCATCTAGTT 58.417 50.000 8.83 0.00 0.00 2.24
550 551 2.750948 GCGCGGGAAATCATCTAGTTA 58.249 47.619 8.83 0.00 0.00 2.24
551 552 3.128349 GCGCGGGAAATCATCTAGTTAA 58.872 45.455 8.83 0.00 0.00 2.01
552 553 3.746492 GCGCGGGAAATCATCTAGTTAAT 59.254 43.478 8.83 0.00 0.00 1.40
553 554 4.213482 GCGCGGGAAATCATCTAGTTAATT 59.787 41.667 8.83 0.00 0.00 1.40
554 555 5.277828 GCGCGGGAAATCATCTAGTTAATTT 60.278 40.000 8.83 0.00 0.00 1.82
555 556 6.073440 GCGCGGGAAATCATCTAGTTAATTTA 60.073 38.462 8.83 0.00 0.00 1.40
556 557 7.519328 GCGCGGGAAATCATCTAGTTAATTTAA 60.519 37.037 8.83 0.00 0.00 1.52
557 558 8.339714 CGCGGGAAATCATCTAGTTAATTTAAA 58.660 33.333 0.00 0.00 0.00 1.52
558 559 9.665264 GCGGGAAATCATCTAGTTAATTTAAAG 57.335 33.333 0.00 0.00 0.00 1.85
559 560 9.665264 CGGGAAATCATCTAGTTAATTTAAAGC 57.335 33.333 0.00 0.00 0.00 3.51
560 561 9.665264 GGGAAATCATCTAGTTAATTTAAAGCG 57.335 33.333 0.00 0.00 0.00 4.68
561 562 9.665264 GGAAATCATCTAGTTAATTTAAAGCGG 57.335 33.333 0.00 0.00 0.00 5.52
562 563 9.665264 GAAATCATCTAGTTAATTTAAAGCGGG 57.335 33.333 0.00 0.00 0.00 6.13
563 564 8.974060 AATCATCTAGTTAATTTAAAGCGGGA 57.026 30.769 0.00 0.00 0.00 5.14
564 565 8.608844 ATCATCTAGTTAATTTAAAGCGGGAG 57.391 34.615 0.00 0.00 0.00 4.30
565 566 6.990349 TCATCTAGTTAATTTAAAGCGGGAGG 59.010 38.462 0.00 0.00 0.00 4.30
566 567 5.121105 TCTAGTTAATTTAAAGCGGGAGGC 58.879 41.667 0.00 0.00 44.05 4.70
576 577 2.934083 GCGGGAGGCTATTTGGATC 58.066 57.895 0.00 0.00 39.11 3.36
577 578 0.398318 GCGGGAGGCTATTTGGATCT 59.602 55.000 0.00 0.00 39.11 2.75
578 579 1.609320 GCGGGAGGCTATTTGGATCTC 60.609 57.143 0.00 0.00 39.11 2.75
579 580 1.974236 CGGGAGGCTATTTGGATCTCT 59.026 52.381 0.00 0.00 0.00 3.10
580 581 2.028567 CGGGAGGCTATTTGGATCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
581 582 3.247162 GGGAGGCTATTTGGATCTCTCT 58.753 50.000 0.00 0.00 0.00 3.10
582 583 3.260632 GGGAGGCTATTTGGATCTCTCTC 59.739 52.174 0.00 0.00 0.00 3.20
583 584 4.159557 GGAGGCTATTTGGATCTCTCTCT 58.840 47.826 0.00 0.00 0.00 3.10
584 585 5.329399 GGAGGCTATTTGGATCTCTCTCTA 58.671 45.833 0.00 0.00 0.00 2.43
585 586 5.777732 GGAGGCTATTTGGATCTCTCTCTAA 59.222 44.000 0.00 0.00 0.00 2.10
586 587 6.268847 GGAGGCTATTTGGATCTCTCTCTAAA 59.731 42.308 0.00 0.00 31.37 1.85
587 588 7.202047 GGAGGCTATTTGGATCTCTCTCTAAAA 60.202 40.741 0.00 0.00 30.73 1.52
588 589 8.095452 AGGCTATTTGGATCTCTCTCTAAAAA 57.905 34.615 0.00 0.00 30.73 1.94
610 611 0.381801 CACTTGCGCAGTCAAAAGGT 59.618 50.000 11.31 0.00 30.92 3.50
612 613 1.873591 ACTTGCGCAGTCAAAAGGTAG 59.126 47.619 11.31 3.19 0.00 3.18
674 675 4.526770 TGAGCATCACGGCATCAG 57.473 55.556 0.00 0.00 42.56 2.90
722 738 0.253207 ACCCACCCAAAACCCCAAAA 60.253 50.000 0.00 0.00 0.00 2.44
723 739 0.919710 CCCACCCAAAACCCCAAAAA 59.080 50.000 0.00 0.00 0.00 1.94
739 755 2.108250 CAAAAACCCCTCCTCCTCTTCA 59.892 50.000 0.00 0.00 0.00 3.02
896 912 4.029809 GGCAGGTAAGGCCGTGGT 62.030 66.667 0.00 0.00 42.39 4.16
1224 1242 1.133790 GCTGTGCATTCACTTGGATCC 59.866 52.381 4.20 4.20 43.49 3.36
1225 1243 1.399440 CTGTGCATTCACTTGGATCCG 59.601 52.381 7.39 0.00 43.49 4.18
1226 1244 1.003003 TGTGCATTCACTTGGATCCGA 59.997 47.619 7.39 3.96 43.49 4.55
1227 1245 2.292267 GTGCATTCACTTGGATCCGAT 58.708 47.619 7.39 0.00 40.03 4.18
1228 1246 2.032550 GTGCATTCACTTGGATCCGATG 59.967 50.000 7.39 5.31 40.03 3.84
1229 1247 1.002033 GCATTCACTTGGATCCGATGC 60.002 52.381 7.39 8.00 0.00 3.91
1230 1248 2.569059 CATTCACTTGGATCCGATGCT 58.431 47.619 7.39 0.00 0.00 3.79
1231 1249 3.732212 CATTCACTTGGATCCGATGCTA 58.268 45.455 7.39 0.00 0.00 3.49
1232 1250 2.890808 TCACTTGGATCCGATGCTAC 57.109 50.000 7.39 0.00 0.00 3.58
1233 1251 2.388735 TCACTTGGATCCGATGCTACT 58.611 47.619 7.39 0.00 0.00 2.57
1238 1257 1.221414 GGATCCGATGCTACTTGTGC 58.779 55.000 0.00 0.00 0.00 4.57
1261 1280 2.187351 CGTTGCCGGATTTGGTAATG 57.813 50.000 5.05 0.00 35.99 1.90
1273 1292 2.526304 TGGTAATGCGAGATACCTGC 57.474 50.000 10.89 0.00 41.76 4.85
1278 1297 1.689243 ATGCGAGATACCTGCTGCCA 61.689 55.000 0.00 0.00 0.00 4.92
1296 1315 4.316645 TGCCATGAATTTGTGACCATTTG 58.683 39.130 0.00 0.00 0.00 2.32
1600 1619 2.868583 CTCATGAAATCCGATTCGTGCT 59.131 45.455 5.20 0.00 43.10 4.40
1653 1674 2.799126 TTTGGGGCATGAATCGTAGT 57.201 45.000 0.00 0.00 0.00 2.73
1654 1675 3.916359 TTTGGGGCATGAATCGTAGTA 57.084 42.857 0.00 0.00 0.00 1.82
1655 1676 3.469008 TTGGGGCATGAATCGTAGTAG 57.531 47.619 0.00 0.00 0.00 2.57
1665 1686 8.827677 GGCATGAATCGTAGTAGAACTTAAAAT 58.172 33.333 0.00 0.00 0.00 1.82
1700 1731 8.797266 AAAGGTTCAGTTTGAATTTATCGTTC 57.203 30.769 0.00 0.00 38.79 3.95
1747 1786 1.213537 CAAACAATGCCTGCCCTCG 59.786 57.895 0.00 0.00 0.00 4.63
1748 1787 2.639327 AAACAATGCCTGCCCTCGC 61.639 57.895 0.00 0.00 0.00 5.03
1751 1790 4.365111 AATGCCTGCCCTCGCCAA 62.365 61.111 0.00 0.00 0.00 4.52
1752 1791 3.884704 AATGCCTGCCCTCGCCAAA 62.885 57.895 0.00 0.00 0.00 3.28
1753 1792 3.884704 ATGCCTGCCCTCGCCAAAA 62.885 57.895 0.00 0.00 0.00 2.44
1754 1793 3.302344 GCCTGCCCTCGCCAAAAA 61.302 61.111 0.00 0.00 0.00 1.94
1812 1851 8.122952 GGATGCACTTGACATGTAAATTACTAC 58.877 37.037 0.00 0.00 0.00 2.73
2054 2094 6.014070 TGTTTACCCAGCAACTATCTACTTGA 60.014 38.462 0.00 0.00 0.00 3.02
2103 2143 8.854979 TTTTCTTTTTGGACATATGCGATATG 57.145 30.769 1.58 12.02 46.26 1.78
2182 2264 4.261578 AGAATGTTTTGCATGGAAGGTG 57.738 40.909 0.00 0.00 37.96 4.00
2187 2269 1.804396 TTTGCATGGAAGGTGGCACG 61.804 55.000 12.17 0.00 35.74 5.34
2217 2299 6.536582 GCTATACAGATGACTCAAACACATGT 59.463 38.462 0.00 0.00 0.00 3.21
2344 3313 7.255277 GCCCTGTGGATTAGTCTTTTCATAATC 60.255 40.741 0.00 0.00 35.90 1.75
2357 3326 4.422073 TTCATAATCACCTACCTGCTGG 57.578 45.455 8.29 8.29 39.83 4.85
2631 3603 7.280876 GCTATATCTGTCAATTCACTGGTTTCA 59.719 37.037 0.00 0.00 0.00 2.69
2674 3646 9.807649 CCCTGAAAAGACCAAATTCTATATTTG 57.192 33.333 0.00 0.00 38.39 2.32
2684 3656 7.725844 ACCAAATTCTATATTTGATGGAGGGAC 59.274 37.037 10.84 0.00 40.42 4.46
2824 3797 6.560253 TTCTTCTCTTACATTGTTCCTTGC 57.440 37.500 0.00 0.00 0.00 4.01
2960 3936 5.409214 TGCATTGATACGATGACATGTATGG 59.591 40.000 0.00 0.00 31.67 2.74
3029 4005 3.747099 TTTACGCGTAGAGGTCTACAC 57.253 47.619 19.61 6.54 46.92 2.90
3231 4207 4.322057 ACAGCCTTGGGATATTTTCTGT 57.678 40.909 0.00 0.00 0.00 3.41
3313 4327 2.846193 TCTTGCACCTACCACAAGTTC 58.154 47.619 0.00 0.00 41.22 3.01
3374 4388 2.817844 CCTTGGTGTTTAGCCAGGTTAC 59.182 50.000 0.00 0.00 37.31 2.50
3432 4446 7.948278 AGAGTGTAATGTTCTGTCTTGTTAC 57.052 36.000 0.00 0.00 0.00 2.50
3442 4456 7.414436 TGTTCTGTCTTGTTACAAAGTATTGC 58.586 34.615 0.00 0.00 40.34 3.56
3548 4562 1.580845 GCTGTGGCTGTAGCAACTGG 61.581 60.000 16.76 9.43 45.12 4.00
3590 4604 4.597507 TCCTGAAGTTGGTCAACCTATTCT 59.402 41.667 9.90 0.00 42.06 2.40
3904 4919 1.056700 ATGCTGCTACTAGGGGTGGG 61.057 60.000 0.00 0.00 0.00 4.61
4031 5046 6.903883 TCTTTCGTAATCCTTGCTCAATAC 57.096 37.500 0.00 0.00 0.00 1.89
4054 5069 1.151450 CCCACCATATGCTCACCCC 59.849 63.158 0.00 0.00 0.00 4.95
4069 5084 2.640826 TCACCCCGAAAAGTCTACCAAT 59.359 45.455 0.00 0.00 0.00 3.16
4130 5145 1.002430 GACTCCATTCTGCTGTGGACA 59.998 52.381 0.00 0.00 39.51 4.02
4141 5156 1.337823 GCTGTGGACAGACGTACCAAT 60.338 52.381 11.06 0.00 46.59 3.16
4163 5178 8.873144 CCAATTCTGGTATGGAAAATGGAATAT 58.127 33.333 0.00 0.00 38.00 1.28
4175 5190 6.406961 GGAAAATGGAATATGGGAGTTGAACC 60.407 42.308 0.00 0.00 0.00 3.62
4200 5215 2.554564 GGAGGTCGAATCCACCCTTTTT 60.555 50.000 12.05 0.00 36.79 1.94
4237 5252 9.289782 AGACACTCTTTTATTACTTGAGCATTT 57.710 29.630 0.00 0.00 0.00 2.32
4288 5303 4.772100 AGGGCAGCAAGTTTATTGTGTAAT 59.228 37.500 0.00 0.00 0.00 1.89
4289 5304 4.864247 GGGCAGCAAGTTTATTGTGTAATG 59.136 41.667 0.00 0.00 0.00 1.90
4290 5305 5.336372 GGGCAGCAAGTTTATTGTGTAATGA 60.336 40.000 0.00 0.00 0.00 2.57
4291 5306 6.155827 GGCAGCAAGTTTATTGTGTAATGAA 58.844 36.000 0.00 0.00 0.00 2.57
4292 5307 6.089417 GGCAGCAAGTTTATTGTGTAATGAAC 59.911 38.462 0.00 0.00 40.90 3.18
4294 5309 8.020819 GCAGCAAGTTTATTGTGTAATGAACTA 58.979 33.333 9.60 0.00 46.34 2.24
4295 5310 9.891828 CAGCAAGTTTATTGTGTAATGAACTAA 57.108 29.630 9.60 0.00 46.34 2.24
4375 5390 6.677781 TCTTGCACTAACATTAGCATAACC 57.322 37.500 0.00 0.00 36.80 2.85
4385 5400 3.552132 TTAGCATAACCGCCTGAATGA 57.448 42.857 0.00 0.00 0.00 2.57
4440 5455 2.094234 GGTGGTGGTGCATCATAAAACC 60.094 50.000 1.27 5.25 0.00 3.27
4449 5464 3.055963 TGCATCATAAAACCTTTGCCCTG 60.056 43.478 0.00 0.00 0.00 4.45
4631 5646 7.970384 TGGTAAGCTATGTCTAAATTGTTTCG 58.030 34.615 0.00 0.00 0.00 3.46
4672 5687 8.395633 TCTTTAGCATTATCTTTTTACGCCTTC 58.604 33.333 0.00 0.00 0.00 3.46
5426 6512 8.700145 TTTGATTCTGGGGGATATATAGACAT 57.300 34.615 0.00 0.00 0.00 3.06
5482 6568 9.264719 GTCAAATCAACTTGGAATTTTCTGAAT 57.735 29.630 0.00 0.00 0.00 2.57
5573 6700 0.662085 GCTAGCATTTCCTCTGCAGC 59.338 55.000 10.63 0.00 42.15 5.25
5611 6738 7.293018 CACTTACCGTGTTCCTTTGTTTATAC 58.707 38.462 0.00 0.00 38.84 1.47
5618 6745 7.197703 CGTGTTCCTTTGTTTATACTTTTGGT 58.802 34.615 0.00 0.00 0.00 3.67
5621 6748 9.589111 TGTTCCTTTGTTTATACTTTTGGTTTC 57.411 29.630 0.00 0.00 0.00 2.78
5713 6841 2.031508 GGTTGGTTGATTACACCGTGTG 60.032 50.000 14.66 0.50 39.75 3.82
5725 6853 4.846779 ACACCGTGTGCTAATCAAAATT 57.153 36.364 2.57 0.00 36.98 1.82
5758 6886 1.603326 CATTTGGTTTTGTGCCCTTGC 59.397 47.619 0.00 0.00 38.26 4.01
5774 6902 3.469739 CCTTGCCAAGAAGTTTTTGCAT 58.530 40.909 5.89 0.00 0.00 3.96
6131 7264 5.314923 TGAGCATCAGCATTACCTTTTTC 57.685 39.130 0.00 0.00 42.56 2.29
6136 7335 6.647895 AGCATCAGCATTACCTTTTTCTTTTG 59.352 34.615 0.00 0.00 45.49 2.44
6149 7348 3.672767 TTCTTTTGTACTCCCTCCGTC 57.327 47.619 0.00 0.00 0.00 4.79
6151 7350 0.604578 TTTTGTACTCCCTCCGTCCG 59.395 55.000 0.00 0.00 0.00 4.79
6152 7351 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
6158 7357 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6164 7363 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
6166 7365 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
6167 7366 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
6168 7367 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
6170 7369 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
6171 7370 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
6172 7371 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
6173 7372 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
6174 7373 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
6175 7374 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
6176 7375 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
6177 7376 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
6181 7380 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
6183 7382 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
6185 7384 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
6186 7385 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
6187 7386 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
6189 7388 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
6191 7390 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
6192 7391 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
6194 7393 8.893563 AATGGACAAAAAGGGATGTATCTAAA 57.106 30.769 0.00 0.00 0.00 1.85
6196 7395 8.117813 TGGACAAAAAGGGATGTATCTAAAAC 57.882 34.615 0.00 0.00 0.00 2.43
6197 7396 7.947890 TGGACAAAAAGGGATGTATCTAAAACT 59.052 33.333 0.00 0.00 0.00 2.66
6198 7397 9.457436 GGACAAAAAGGGATGTATCTAAAACTA 57.543 33.333 0.00 0.00 0.00 2.24
6252 7533 9.465199 TTCATTTTGATGATGAGTATTTCCAGA 57.535 29.630 0.00 0.00 35.17 3.86
6253 7534 8.896744 TCATTTTGATGATGAGTATTTCCAGAC 58.103 33.333 0.00 0.00 0.00 3.51
6254 7535 6.908870 TTTGATGATGAGTATTTCCAGACG 57.091 37.500 0.00 0.00 0.00 4.18
6255 7536 4.948847 TGATGATGAGTATTTCCAGACGG 58.051 43.478 0.00 0.00 0.00 4.79
6256 7537 4.649218 TGATGATGAGTATTTCCAGACGGA 59.351 41.667 0.00 0.00 40.60 4.69
6257 7538 4.655762 TGATGAGTATTTCCAGACGGAG 57.344 45.455 0.00 0.00 44.10 4.63
6260 7541 2.291996 TGAGTATTTCCAGACGGAGGGA 60.292 50.000 0.00 0.00 44.10 4.20
6261 7542 2.362717 GAGTATTTCCAGACGGAGGGAG 59.637 54.545 0.00 0.00 44.10 4.30
6262 7543 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
6263 7544 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
6264 7545 1.848652 TTTCCAGACGGAGGGAGTAG 58.151 55.000 0.00 0.00 44.10 2.57
6482 7770 1.933853 GCTCCTAGTTTGTATGCACCG 59.066 52.381 0.00 0.00 0.00 4.94
6602 7891 5.065474 GTGTAAGCCTTTTATGCGGTGATAA 59.935 40.000 0.00 0.00 0.00 1.75
6632 7921 4.321750 CCTTGCTTTCATGATCTTGCAGTT 60.322 41.667 0.00 0.00 0.00 3.16
6635 7924 5.603596 TGCTTTCATGATCTTGCAGTTTTT 58.396 33.333 0.00 0.00 0.00 1.94
6723 8017 4.335315 GCATCATTTCATTGTCTTACCGGA 59.665 41.667 9.46 0.00 0.00 5.14
6737 8031 8.086851 TGTCTTACCGGACATTACTTAAAAAC 57.913 34.615 9.46 0.00 40.72 2.43
6813 8107 9.031360 CATTTCTTTGAATTATCATCTGGCTTG 57.969 33.333 0.00 0.00 34.96 4.01
7003 8298 1.473258 TGGATTGTAAGGGTGCATGC 58.527 50.000 11.82 11.82 0.00 4.06
7004 8299 1.005805 TGGATTGTAAGGGTGCATGCT 59.994 47.619 20.33 0.00 0.00 3.79
7005 8300 2.240921 TGGATTGTAAGGGTGCATGCTA 59.759 45.455 20.33 2.15 0.00 3.49
7006 8301 3.287222 GGATTGTAAGGGTGCATGCTAA 58.713 45.455 20.33 0.00 0.00 3.09
7007 8302 3.699038 GGATTGTAAGGGTGCATGCTAAA 59.301 43.478 20.33 0.00 0.00 1.85
7008 8303 4.440112 GGATTGTAAGGGTGCATGCTAAAC 60.440 45.833 20.33 8.76 0.00 2.01
7009 8304 3.147553 TGTAAGGGTGCATGCTAAACA 57.852 42.857 20.33 11.32 0.00 2.83
7010 8305 3.696045 TGTAAGGGTGCATGCTAAACAT 58.304 40.909 20.33 0.00 40.66 2.71
7046 8341 4.684703 CCTAAGTCCTAAGTTCGTTGTGTG 59.315 45.833 0.00 0.00 0.00 3.82
7164 8494 6.152492 TGCCTGCATATGTTGTTTTGATAAGA 59.848 34.615 4.29 0.00 0.00 2.10
7203 8533 3.042682 TCAGGTAAGGAACACAAGGACA 58.957 45.455 0.00 0.00 0.00 4.02
7306 8636 3.902881 TCCTGAGAAGAGCTGGATTTC 57.097 47.619 0.00 0.00 0.00 2.17
7322 8652 8.975295 AGCTGGATTTCTAAAGCATAATCTTTT 58.025 29.630 0.00 0.00 38.14 2.27
7323 8653 9.591792 GCTGGATTTCTAAAGCATAATCTTTTT 57.408 29.630 0.00 0.00 37.46 1.94
7372 8702 7.461182 TCTTTGGGTTACATCATACAAAAGG 57.539 36.000 0.00 0.00 0.00 3.11
7534 8864 6.397272 TGGTATTGATTTGCAGGTTCATTTC 58.603 36.000 0.00 0.00 0.00 2.17
7697 9027 6.370166 GGTAGTGCATCAGCCTTTAGATATTC 59.630 42.308 0.00 0.00 41.13 1.75
7757 9087 7.769044 AGTTCTCTCTACTAGATCAACTCAGAC 59.231 40.741 0.00 0.00 34.39 3.51
7772 9102 6.876789 TCAACTCAGACTCTCAGACTACTTAG 59.123 42.308 0.00 0.00 0.00 2.18
7824 9182 1.810755 GGGATCTCACAAACGAAACCC 59.189 52.381 0.00 0.00 0.00 4.11
8021 9379 0.611200 ACATGCTGTGTACGCCCTTA 59.389 50.000 3.51 0.00 39.91 2.69
8065 9423 3.814842 TGTCGTGAGCTGAATTCAATGTT 59.185 39.130 9.88 0.00 0.00 2.71
8117 9475 5.309323 TGTTTTTCTGATTGGCGATTAGG 57.691 39.130 6.67 0.00 0.00 2.69
8137 9495 1.160329 ACTCGCACTGAAGTTGCCAC 61.160 55.000 0.00 0.00 0.00 5.01
8174 9539 1.005924 GGAATGGACATGAGTTGGGGT 59.994 52.381 0.00 0.00 0.00 4.95
8175 9540 2.241176 GGAATGGACATGAGTTGGGGTA 59.759 50.000 0.00 0.00 0.00 3.69
8176 9541 3.279434 GAATGGACATGAGTTGGGGTAC 58.721 50.000 0.00 0.00 0.00 3.34
8211 9582 4.611355 CGTCAGCGTTGTCTCATCAAAATT 60.611 41.667 0.00 0.00 0.00 1.82
8239 9610 1.421268 ACTTGGTCACTTGCCAGATGA 59.579 47.619 0.00 0.00 37.31 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 225 9.886132 AGTCGAAGGTAAACAAATATCATTAGT 57.114 29.630 0.00 0.00 0.00 2.24
229 230 8.609176 GCATTAGTCGAAGGTAAACAAATATCA 58.391 33.333 0.00 0.00 0.00 2.15
230 231 8.068380 GGCATTAGTCGAAGGTAAACAAATATC 58.932 37.037 0.00 0.00 0.00 1.63
231 232 7.554835 TGGCATTAGTCGAAGGTAAACAAATAT 59.445 33.333 0.00 0.00 0.00 1.28
232 233 6.879993 TGGCATTAGTCGAAGGTAAACAAATA 59.120 34.615 0.00 0.00 0.00 1.40
233 234 5.708230 TGGCATTAGTCGAAGGTAAACAAAT 59.292 36.000 0.00 0.00 0.00 2.32
234 235 5.064558 TGGCATTAGTCGAAGGTAAACAAA 58.935 37.500 0.00 0.00 0.00 2.83
235 236 4.643463 TGGCATTAGTCGAAGGTAAACAA 58.357 39.130 0.00 0.00 0.00 2.83
236 237 4.274602 TGGCATTAGTCGAAGGTAAACA 57.725 40.909 0.00 0.00 0.00 2.83
237 238 5.813080 AATGGCATTAGTCGAAGGTAAAC 57.187 39.130 11.81 0.00 0.00 2.01
238 239 5.708230 ACAAATGGCATTAGTCGAAGGTAAA 59.292 36.000 14.05 0.00 0.00 2.01
239 240 5.250200 ACAAATGGCATTAGTCGAAGGTAA 58.750 37.500 14.05 0.00 0.00 2.85
240 241 4.839121 ACAAATGGCATTAGTCGAAGGTA 58.161 39.130 14.05 0.00 0.00 3.08
241 242 3.686016 ACAAATGGCATTAGTCGAAGGT 58.314 40.909 14.05 0.00 0.00 3.50
242 243 4.701956 AACAAATGGCATTAGTCGAAGG 57.298 40.909 14.05 0.00 0.00 3.46
243 244 6.027749 GGTAAACAAATGGCATTAGTCGAAG 58.972 40.000 14.05 0.93 0.00 3.79
244 245 5.708230 AGGTAAACAAATGGCATTAGTCGAA 59.292 36.000 14.05 0.00 0.00 3.71
245 246 5.250200 AGGTAAACAAATGGCATTAGTCGA 58.750 37.500 14.05 0.00 0.00 4.20
246 247 5.560966 AGGTAAACAAATGGCATTAGTCG 57.439 39.130 14.05 5.33 0.00 4.18
247 248 7.158099 AGAAGGTAAACAAATGGCATTAGTC 57.842 36.000 14.05 1.79 0.00 2.59
248 249 7.888546 AGTAGAAGGTAAACAAATGGCATTAGT 59.111 33.333 14.05 0.00 0.00 2.24
249 250 8.184192 CAGTAGAAGGTAAACAAATGGCATTAG 58.816 37.037 14.05 0.00 0.00 1.73
250 251 7.668052 ACAGTAGAAGGTAAACAAATGGCATTA 59.332 33.333 14.05 0.00 0.00 1.90
251 252 6.493458 ACAGTAGAAGGTAAACAAATGGCATT 59.507 34.615 6.96 6.96 0.00 3.56
252 253 6.010219 ACAGTAGAAGGTAAACAAATGGCAT 58.990 36.000 0.00 0.00 0.00 4.40
253 254 5.240623 CACAGTAGAAGGTAAACAAATGGCA 59.759 40.000 0.00 0.00 0.00 4.92
254 255 5.335661 CCACAGTAGAAGGTAAACAAATGGC 60.336 44.000 0.00 0.00 0.00 4.40
255 256 5.183140 CCCACAGTAGAAGGTAAACAAATGG 59.817 44.000 0.00 0.00 0.00 3.16
256 257 6.001460 TCCCACAGTAGAAGGTAAACAAATG 58.999 40.000 0.00 0.00 0.00 2.32
257 258 6.195600 TCCCACAGTAGAAGGTAAACAAAT 57.804 37.500 0.00 0.00 0.00 2.32
258 259 5.633655 TCCCACAGTAGAAGGTAAACAAA 57.366 39.130 0.00 0.00 0.00 2.83
259 260 5.308497 TCATCCCACAGTAGAAGGTAAACAA 59.692 40.000 0.00 0.00 0.00 2.83
260 261 4.841813 TCATCCCACAGTAGAAGGTAAACA 59.158 41.667 0.00 0.00 0.00 2.83
261 262 5.416271 TCATCCCACAGTAGAAGGTAAAC 57.584 43.478 0.00 0.00 0.00 2.01
262 263 6.214615 TGATTCATCCCACAGTAGAAGGTAAA 59.785 38.462 0.00 0.00 0.00 2.01
263 264 5.724370 TGATTCATCCCACAGTAGAAGGTAA 59.276 40.000 0.00 0.00 0.00 2.85
264 265 5.277250 TGATTCATCCCACAGTAGAAGGTA 58.723 41.667 0.00 0.00 0.00 3.08
265 266 4.104086 TGATTCATCCCACAGTAGAAGGT 58.896 43.478 0.00 0.00 0.00 3.50
266 267 4.760530 TGATTCATCCCACAGTAGAAGG 57.239 45.455 0.00 0.00 0.00 3.46
267 268 6.176183 ACTTTGATTCATCCCACAGTAGAAG 58.824 40.000 0.00 0.00 0.00 2.85
268 269 6.126863 ACTTTGATTCATCCCACAGTAGAA 57.873 37.500 0.00 0.00 0.00 2.10
269 270 5.762179 ACTTTGATTCATCCCACAGTAGA 57.238 39.130 0.00 0.00 0.00 2.59
270 271 7.921786 TTTACTTTGATTCATCCCACAGTAG 57.078 36.000 0.00 0.00 0.00 2.57
271 272 7.888021 ACATTTACTTTGATTCATCCCACAGTA 59.112 33.333 0.00 0.00 0.00 2.74
272 273 6.721208 ACATTTACTTTGATTCATCCCACAGT 59.279 34.615 0.00 0.00 0.00 3.55
273 274 7.161773 ACATTTACTTTGATTCATCCCACAG 57.838 36.000 0.00 0.00 0.00 3.66
274 275 7.667635 TGTACATTTACTTTGATTCATCCCACA 59.332 33.333 0.00 0.00 0.00 4.17
275 276 7.968405 GTGTACATTTACTTTGATTCATCCCAC 59.032 37.037 0.00 0.00 0.00 4.61
276 277 7.148323 CGTGTACATTTACTTTGATTCATCCCA 60.148 37.037 0.00 0.00 0.00 4.37
277 278 7.186804 CGTGTACATTTACTTTGATTCATCCC 58.813 38.462 0.00 0.00 0.00 3.85
278 279 7.186804 CCGTGTACATTTACTTTGATTCATCC 58.813 38.462 0.00 0.00 0.00 3.51
279 280 7.065324 TCCCGTGTACATTTACTTTGATTCATC 59.935 37.037 0.00 0.00 0.00 2.92
280 281 6.882140 TCCCGTGTACATTTACTTTGATTCAT 59.118 34.615 0.00 0.00 0.00 2.57
281 282 6.231951 TCCCGTGTACATTTACTTTGATTCA 58.768 36.000 0.00 0.00 0.00 2.57
282 283 6.370718 ACTCCCGTGTACATTTACTTTGATTC 59.629 38.462 0.00 0.00 0.00 2.52
283 284 6.235664 ACTCCCGTGTACATTTACTTTGATT 58.764 36.000 0.00 0.00 0.00 2.57
284 285 5.801380 ACTCCCGTGTACATTTACTTTGAT 58.199 37.500 0.00 0.00 0.00 2.57
285 286 5.217978 ACTCCCGTGTACATTTACTTTGA 57.782 39.130 0.00 0.00 0.00 2.69
286 287 5.699458 AGAACTCCCGTGTACATTTACTTTG 59.301 40.000 0.00 0.00 0.00 2.77
287 288 5.861727 AGAACTCCCGTGTACATTTACTTT 58.138 37.500 0.00 0.00 0.00 2.66
288 289 5.479124 AGAACTCCCGTGTACATTTACTT 57.521 39.130 0.00 0.00 0.00 2.24
289 290 5.479124 AAGAACTCCCGTGTACATTTACT 57.521 39.130 0.00 0.00 0.00 2.24
290 291 6.257193 CCATAAGAACTCCCGTGTACATTTAC 59.743 42.308 0.00 0.00 0.00 2.01
291 292 6.154877 TCCATAAGAACTCCCGTGTACATTTA 59.845 38.462 0.00 0.00 0.00 1.40
292 293 5.046159 TCCATAAGAACTCCCGTGTACATTT 60.046 40.000 0.00 0.00 0.00 2.32
293 294 4.468510 TCCATAAGAACTCCCGTGTACATT 59.531 41.667 0.00 0.00 0.00 2.71
294 295 4.028131 TCCATAAGAACTCCCGTGTACAT 58.972 43.478 0.00 0.00 0.00 2.29
295 296 3.433343 TCCATAAGAACTCCCGTGTACA 58.567 45.455 0.00 0.00 0.00 2.90
296 297 3.698040 TCTCCATAAGAACTCCCGTGTAC 59.302 47.826 0.00 0.00 0.00 2.90
297 298 3.972133 TCTCCATAAGAACTCCCGTGTA 58.028 45.455 0.00 0.00 0.00 2.90
298 299 2.816411 TCTCCATAAGAACTCCCGTGT 58.184 47.619 0.00 0.00 0.00 4.49
299 300 4.408182 AATCTCCATAAGAACTCCCGTG 57.592 45.455 0.00 0.00 37.61 4.94
300 301 4.960469 TGTAATCTCCATAAGAACTCCCGT 59.040 41.667 0.00 0.00 37.61 5.28
301 302 5.163447 TGTGTAATCTCCATAAGAACTCCCG 60.163 44.000 0.00 0.00 37.61 5.14
302 303 6.235231 TGTGTAATCTCCATAAGAACTCCC 57.765 41.667 0.00 0.00 37.61 4.30
303 304 8.643324 ACTATGTGTAATCTCCATAAGAACTCC 58.357 37.037 0.00 0.00 37.61 3.85
304 305 9.685828 GACTATGTGTAATCTCCATAAGAACTC 57.314 37.037 0.00 0.00 37.61 3.01
305 306 9.201989 TGACTATGTGTAATCTCCATAAGAACT 57.798 33.333 0.00 0.00 37.61 3.01
306 307 9.817809 TTGACTATGTGTAATCTCCATAAGAAC 57.182 33.333 0.00 0.00 37.61 3.01
308 309 8.642432 CCTTGACTATGTGTAATCTCCATAAGA 58.358 37.037 0.00 0.00 38.72 2.10
309 310 7.386299 GCCTTGACTATGTGTAATCTCCATAAG 59.614 40.741 0.00 0.00 0.00 1.73
310 311 7.071196 AGCCTTGACTATGTGTAATCTCCATAA 59.929 37.037 0.00 0.00 0.00 1.90
311 312 6.554982 AGCCTTGACTATGTGTAATCTCCATA 59.445 38.462 0.00 0.00 0.00 2.74
312 313 5.367937 AGCCTTGACTATGTGTAATCTCCAT 59.632 40.000 0.00 0.00 0.00 3.41
313 314 4.716784 AGCCTTGACTATGTGTAATCTCCA 59.283 41.667 0.00 0.00 0.00 3.86
314 315 5.283457 AGCCTTGACTATGTGTAATCTCC 57.717 43.478 0.00 0.00 0.00 3.71
315 316 4.979197 CGAGCCTTGACTATGTGTAATCTC 59.021 45.833 0.00 0.00 0.00 2.75
316 317 4.202161 CCGAGCCTTGACTATGTGTAATCT 60.202 45.833 0.00 0.00 0.00 2.40
317 318 4.051922 CCGAGCCTTGACTATGTGTAATC 58.948 47.826 0.00 0.00 0.00 1.75
318 319 3.181465 CCCGAGCCTTGACTATGTGTAAT 60.181 47.826 0.00 0.00 0.00 1.89
319 320 2.167693 CCCGAGCCTTGACTATGTGTAA 59.832 50.000 0.00 0.00 0.00 2.41
320 321 1.754803 CCCGAGCCTTGACTATGTGTA 59.245 52.381 0.00 0.00 0.00 2.90
321 322 0.537188 CCCGAGCCTTGACTATGTGT 59.463 55.000 0.00 0.00 0.00 3.72
322 323 0.537188 ACCCGAGCCTTGACTATGTG 59.463 55.000 0.00 0.00 0.00 3.21
323 324 0.824759 GACCCGAGCCTTGACTATGT 59.175 55.000 0.00 0.00 0.00 2.29
324 325 0.824109 TGACCCGAGCCTTGACTATG 59.176 55.000 0.00 0.00 0.00 2.23
325 326 1.794714 ATGACCCGAGCCTTGACTAT 58.205 50.000 0.00 0.00 0.00 2.12
326 327 2.429610 GTTATGACCCGAGCCTTGACTA 59.570 50.000 0.00 0.00 0.00 2.59
327 328 1.207329 GTTATGACCCGAGCCTTGACT 59.793 52.381 0.00 0.00 0.00 3.41
328 329 1.207329 AGTTATGACCCGAGCCTTGAC 59.793 52.381 0.00 0.00 0.00 3.18
329 330 1.568504 AGTTATGACCCGAGCCTTGA 58.431 50.000 0.00 0.00 0.00 3.02
330 331 2.403252 AAGTTATGACCCGAGCCTTG 57.597 50.000 0.00 0.00 0.00 3.61
331 332 3.081804 CAAAAGTTATGACCCGAGCCTT 58.918 45.455 0.00 0.00 0.00 4.35
332 333 2.039879 ACAAAAGTTATGACCCGAGCCT 59.960 45.455 0.00 0.00 0.00 4.58
333 334 2.161609 CACAAAAGTTATGACCCGAGCC 59.838 50.000 0.00 0.00 0.00 4.70
334 335 3.071479 TCACAAAAGTTATGACCCGAGC 58.929 45.455 0.00 0.00 0.00 5.03
335 336 4.935205 TCATCACAAAAGTTATGACCCGAG 59.065 41.667 0.00 0.00 0.00 4.63
336 337 4.900684 TCATCACAAAAGTTATGACCCGA 58.099 39.130 0.00 0.00 0.00 5.14
337 338 5.123820 ACATCATCACAAAAGTTATGACCCG 59.876 40.000 0.00 0.00 31.56 5.28
338 339 6.515272 ACATCATCACAAAAGTTATGACCC 57.485 37.500 0.00 0.00 31.56 4.46
339 340 8.816640 AAAACATCATCACAAAAGTTATGACC 57.183 30.769 0.00 0.00 31.56 4.02
346 347 9.950680 CTACAACTAAAACATCATCACAAAAGT 57.049 29.630 0.00 0.00 0.00 2.66
347 348 8.905702 GCTACAACTAAAACATCATCACAAAAG 58.094 33.333 0.00 0.00 0.00 2.27
348 349 8.629158 AGCTACAACTAAAACATCATCACAAAA 58.371 29.630 0.00 0.00 0.00 2.44
349 350 8.165239 AGCTACAACTAAAACATCATCACAAA 57.835 30.769 0.00 0.00 0.00 2.83
350 351 7.744087 AGCTACAACTAAAACATCATCACAA 57.256 32.000 0.00 0.00 0.00 3.33
351 352 7.443879 TCAAGCTACAACTAAAACATCATCACA 59.556 33.333 0.00 0.00 0.00 3.58
352 353 7.806690 TCAAGCTACAACTAAAACATCATCAC 58.193 34.615 0.00 0.00 0.00 3.06
353 354 7.977789 TCAAGCTACAACTAAAACATCATCA 57.022 32.000 0.00 0.00 0.00 3.07
354 355 9.334693 CTTTCAAGCTACAACTAAAACATCATC 57.665 33.333 0.00 0.00 0.00 2.92
355 356 8.850156 ACTTTCAAGCTACAACTAAAACATCAT 58.150 29.630 0.00 0.00 0.00 2.45
356 357 8.220755 ACTTTCAAGCTACAACTAAAACATCA 57.779 30.769 0.00 0.00 0.00 3.07
357 358 9.516314 AAACTTTCAAGCTACAACTAAAACATC 57.484 29.630 0.00 0.00 0.00 3.06
358 359 9.869757 AAAACTTTCAAGCTACAACTAAAACAT 57.130 25.926 0.00 0.00 0.00 2.71
359 360 9.349145 GAAAACTTTCAAGCTACAACTAAAACA 57.651 29.630 0.00 0.00 37.15 2.83
360 361 9.569167 AGAAAACTTTCAAGCTACAACTAAAAC 57.431 29.630 5.07 0.00 39.61 2.43
362 363 9.783256 GAAGAAAACTTTCAAGCTACAACTAAA 57.217 29.630 5.07 0.00 39.61 1.85
363 364 9.174166 AGAAGAAAACTTTCAAGCTACAACTAA 57.826 29.630 5.07 0.00 39.61 2.24
364 365 8.732746 AGAAGAAAACTTTCAAGCTACAACTA 57.267 30.769 5.07 0.00 39.61 2.24
365 366 7.631717 AGAAGAAAACTTTCAAGCTACAACT 57.368 32.000 5.07 0.00 39.61 3.16
366 367 9.952188 AATAGAAGAAAACTTTCAAGCTACAAC 57.048 29.630 5.07 0.00 39.61 3.32
367 368 9.950680 CAATAGAAGAAAACTTTCAAGCTACAA 57.049 29.630 5.07 0.00 39.61 2.41
368 369 8.076178 GCAATAGAAGAAAACTTTCAAGCTACA 58.924 33.333 5.07 0.00 39.61 2.74
369 370 8.076178 TGCAATAGAAGAAAACTTTCAAGCTAC 58.924 33.333 5.07 0.00 39.61 3.58
370 371 8.165239 TGCAATAGAAGAAAACTTTCAAGCTA 57.835 30.769 5.07 3.87 39.61 3.32
371 372 7.013655 TCTGCAATAGAAGAAAACTTTCAAGCT 59.986 33.333 5.07 0.00 39.61 3.74
372 373 7.141363 TCTGCAATAGAAGAAAACTTTCAAGC 58.859 34.615 5.07 0.00 39.61 4.01
386 387 3.525537 CTCCGCTTCTTCTGCAATAGAA 58.474 45.455 9.18 9.18 43.01 2.10
387 388 2.159043 CCTCCGCTTCTTCTGCAATAGA 60.159 50.000 0.00 0.00 0.00 1.98
388 389 2.208431 CCTCCGCTTCTTCTGCAATAG 58.792 52.381 0.00 0.00 0.00 1.73
389 390 1.555075 ACCTCCGCTTCTTCTGCAATA 59.445 47.619 0.00 0.00 0.00 1.90
390 391 0.326264 ACCTCCGCTTCTTCTGCAAT 59.674 50.000 0.00 0.00 0.00 3.56
391 392 0.603707 CACCTCCGCTTCTTCTGCAA 60.604 55.000 0.00 0.00 0.00 4.08
392 393 1.004560 CACCTCCGCTTCTTCTGCA 60.005 57.895 0.00 0.00 0.00 4.41
393 394 1.743252 CCACCTCCGCTTCTTCTGC 60.743 63.158 0.00 0.00 0.00 4.26
394 395 0.895530 TACCACCTCCGCTTCTTCTG 59.104 55.000 0.00 0.00 0.00 3.02
395 396 1.187087 CTACCACCTCCGCTTCTTCT 58.813 55.000 0.00 0.00 0.00 2.85
396 397 0.460459 GCTACCACCTCCGCTTCTTC 60.460 60.000 0.00 0.00 0.00 2.87
397 398 1.597461 GCTACCACCTCCGCTTCTT 59.403 57.895 0.00 0.00 0.00 2.52
398 399 2.359967 GGCTACCACCTCCGCTTCT 61.360 63.158 0.00 0.00 0.00 2.85
399 400 1.041447 TAGGCTACCACCTCCGCTTC 61.041 60.000 0.00 0.00 41.50 3.86
400 401 0.616679 TTAGGCTACCACCTCCGCTT 60.617 55.000 0.00 0.00 41.50 4.68
401 402 0.616679 TTTAGGCTACCACCTCCGCT 60.617 55.000 0.00 0.00 41.50 5.52
402 403 0.468648 ATTTAGGCTACCACCTCCGC 59.531 55.000 0.00 0.00 41.50 5.54
403 404 2.963782 AGTATTTAGGCTACCACCTCCG 59.036 50.000 0.00 0.00 41.50 4.63
404 405 6.042897 ACAATAGTATTTAGGCTACCACCTCC 59.957 42.308 0.00 0.00 41.50 4.30
405 406 7.063934 ACAATAGTATTTAGGCTACCACCTC 57.936 40.000 0.00 0.00 41.50 3.85
406 407 7.092578 ACAACAATAGTATTTAGGCTACCACCT 60.093 37.037 0.00 0.00 44.31 4.00
407 408 7.052248 ACAACAATAGTATTTAGGCTACCACC 58.948 38.462 0.00 0.00 0.00 4.61
408 409 7.767198 TGACAACAATAGTATTTAGGCTACCAC 59.233 37.037 0.00 0.00 0.00 4.16
409 410 7.853299 TGACAACAATAGTATTTAGGCTACCA 58.147 34.615 0.00 0.00 0.00 3.25
410 411 8.726870 TTGACAACAATAGTATTTAGGCTACC 57.273 34.615 0.00 0.00 0.00 3.18
473 474 9.945904 TGTTTTACTTCACAAATTTACCCTTTT 57.054 25.926 0.00 0.00 0.00 2.27
474 475 9.373603 GTGTTTTACTTCACAAATTTACCCTTT 57.626 29.630 0.00 0.00 35.04 3.11
475 476 8.755028 AGTGTTTTACTTCACAAATTTACCCTT 58.245 29.630 0.00 0.00 35.67 3.95
476 477 8.301252 AGTGTTTTACTTCACAAATTTACCCT 57.699 30.769 0.00 0.00 35.67 4.34
485 486 9.243637 GCATGAAATTAGTGTTTTACTTCACAA 57.756 29.630 0.00 0.00 40.89 3.33
486 487 8.409371 TGCATGAAATTAGTGTTTTACTTCACA 58.591 29.630 0.00 0.00 40.89 3.58
487 488 8.795786 TGCATGAAATTAGTGTTTTACTTCAC 57.204 30.769 0.00 0.00 40.89 3.18
488 489 9.979578 ATTGCATGAAATTAGTGTTTTACTTCA 57.020 25.926 0.00 0.00 40.89 3.02
495 496 9.382275 GGGAAATATTGCATGAAATTAGTGTTT 57.618 29.630 3.68 0.00 0.00 2.83
496 497 7.706179 CGGGAAATATTGCATGAAATTAGTGTT 59.294 33.333 3.68 0.00 0.00 3.32
497 498 7.202526 CGGGAAATATTGCATGAAATTAGTGT 58.797 34.615 3.68 0.00 0.00 3.55
498 499 6.144402 GCGGGAAATATTGCATGAAATTAGTG 59.856 38.462 3.68 0.00 0.00 2.74
499 500 6.183360 TGCGGGAAATATTGCATGAAATTAGT 60.183 34.615 3.68 0.00 31.31 2.24
500 501 6.215121 TGCGGGAAATATTGCATGAAATTAG 58.785 36.000 3.68 0.00 31.31 1.73
501 502 6.154203 TGCGGGAAATATTGCATGAAATTA 57.846 33.333 3.68 0.00 31.31 1.40
502 503 5.021033 TGCGGGAAATATTGCATGAAATT 57.979 34.783 3.68 0.00 31.31 1.82
503 504 4.624015 CTGCGGGAAATATTGCATGAAAT 58.376 39.130 3.88 3.88 36.64 2.17
504 505 3.737663 GCTGCGGGAAATATTGCATGAAA 60.738 43.478 0.00 0.00 36.64 2.69
505 506 2.223782 GCTGCGGGAAATATTGCATGAA 60.224 45.455 0.00 0.00 36.64 2.57
506 507 1.337703 GCTGCGGGAAATATTGCATGA 59.662 47.619 0.00 0.00 36.64 3.07
507 508 1.067364 TGCTGCGGGAAATATTGCATG 59.933 47.619 0.00 0.00 36.64 4.06
508 509 1.401761 TGCTGCGGGAAATATTGCAT 58.598 45.000 0.00 0.00 36.64 3.96
509 510 1.135141 GTTGCTGCGGGAAATATTGCA 60.135 47.619 0.00 0.00 35.75 4.08
510 511 1.559831 GTTGCTGCGGGAAATATTGC 58.440 50.000 0.00 0.00 0.00 3.56
511 512 1.826327 CGTTGCTGCGGGAAATATTG 58.174 50.000 0.00 0.00 0.00 1.90
512 513 0.100503 GCGTTGCTGCGGGAAATATT 59.899 50.000 0.00 0.00 0.00 1.28
513 514 1.727467 GCGTTGCTGCGGGAAATAT 59.273 52.632 0.00 0.00 0.00 1.28
514 515 3.183259 GCGTTGCTGCGGGAAATA 58.817 55.556 0.00 0.00 0.00 1.40
523 524 4.101790 ATTTCCCGCGCGTTGCTG 62.102 61.111 29.95 12.82 43.27 4.41
524 525 3.799755 GATTTCCCGCGCGTTGCT 61.800 61.111 29.95 9.03 43.27 3.91
525 526 3.395470 ATGATTTCCCGCGCGTTGC 62.395 57.895 29.95 11.83 41.47 4.17
526 527 1.297598 GATGATTTCCCGCGCGTTG 60.298 57.895 29.95 19.43 0.00 4.10
527 528 0.179094 TAGATGATTTCCCGCGCGTT 60.179 50.000 29.95 7.63 0.00 4.84
528 529 0.597637 CTAGATGATTTCCCGCGCGT 60.598 55.000 29.95 9.79 0.00 6.01
529 530 0.597637 ACTAGATGATTTCCCGCGCG 60.598 55.000 25.67 25.67 0.00 6.86
530 531 1.583054 AACTAGATGATTTCCCGCGC 58.417 50.000 0.00 0.00 0.00 6.86
531 532 5.924475 AATTAACTAGATGATTTCCCGCG 57.076 39.130 0.00 0.00 0.00 6.46
532 533 9.665264 CTTTAAATTAACTAGATGATTTCCCGC 57.335 33.333 6.09 0.00 0.00 6.13
533 534 9.665264 GCTTTAAATTAACTAGATGATTTCCCG 57.335 33.333 6.09 0.00 0.00 5.14
534 535 9.665264 CGCTTTAAATTAACTAGATGATTTCCC 57.335 33.333 6.09 0.00 0.00 3.97
535 536 9.665264 CCGCTTTAAATTAACTAGATGATTTCC 57.335 33.333 6.09 0.00 0.00 3.13
536 537 9.665264 CCCGCTTTAAATTAACTAGATGATTTC 57.335 33.333 6.09 0.00 0.00 2.17
537 538 9.403583 TCCCGCTTTAAATTAACTAGATGATTT 57.596 29.630 7.69 7.69 0.00 2.17
538 539 8.974060 TCCCGCTTTAAATTAACTAGATGATT 57.026 30.769 0.00 0.00 0.00 2.57
539 540 7.661847 CCTCCCGCTTTAAATTAACTAGATGAT 59.338 37.037 0.00 0.00 0.00 2.45
540 541 6.990349 CCTCCCGCTTTAAATTAACTAGATGA 59.010 38.462 0.00 0.00 0.00 2.92
541 542 6.293462 GCCTCCCGCTTTAAATTAACTAGATG 60.293 42.308 0.00 0.00 0.00 2.90
542 543 5.763698 GCCTCCCGCTTTAAATTAACTAGAT 59.236 40.000 0.00 0.00 0.00 1.98
543 544 5.121105 GCCTCCCGCTTTAAATTAACTAGA 58.879 41.667 0.00 0.00 0.00 2.43
544 545 5.419760 GCCTCCCGCTTTAAATTAACTAG 57.580 43.478 0.00 0.00 0.00 2.57
558 559 0.398318 AGATCCAAATAGCCTCCCGC 59.602 55.000 0.00 0.00 37.98 6.13
559 560 1.974236 AGAGATCCAAATAGCCTCCCG 59.026 52.381 0.00 0.00 0.00 5.14
560 561 3.247162 AGAGAGATCCAAATAGCCTCCC 58.753 50.000 0.00 0.00 0.00 4.30
561 562 4.159557 AGAGAGAGATCCAAATAGCCTCC 58.840 47.826 0.00 0.00 0.00 4.30
562 563 6.909550 TTAGAGAGAGATCCAAATAGCCTC 57.090 41.667 0.00 0.00 0.00 4.70
563 564 7.682787 TTTTAGAGAGAGATCCAAATAGCCT 57.317 36.000 0.00 0.00 0.00 4.58
586 587 2.645730 TTGACTGCGCAAGTGTTTTT 57.354 40.000 13.05 0.00 40.07 1.94
587 588 2.645730 TTTGACTGCGCAAGTGTTTT 57.354 40.000 13.05 0.00 40.07 2.43
588 589 2.529151 CTTTTGACTGCGCAAGTGTTT 58.471 42.857 13.05 0.00 40.07 2.83
589 590 1.202290 CCTTTTGACTGCGCAAGTGTT 60.202 47.619 13.05 0.00 40.07 3.32
590 591 0.381801 CCTTTTGACTGCGCAAGTGT 59.618 50.000 13.05 5.89 40.07 3.55
591 592 0.381801 ACCTTTTGACTGCGCAAGTG 59.618 50.000 13.05 1.71 40.07 3.16
592 593 1.873591 CTACCTTTTGACTGCGCAAGT 59.126 47.619 13.05 12.11 43.85 3.16
593 594 1.197721 CCTACCTTTTGACTGCGCAAG 59.802 52.381 13.05 8.51 43.44 4.01
594 595 1.234821 CCTACCTTTTGACTGCGCAA 58.765 50.000 13.05 0.00 0.00 4.85
595 596 1.234615 GCCTACCTTTTGACTGCGCA 61.235 55.000 10.98 10.98 0.00 6.09
674 675 2.126463 GCTTCGCTTTTTCGGGGC 60.126 61.111 0.00 0.00 0.00 5.80
679 685 1.268743 ACTGCTGTGCTTCGCTTTTTC 60.269 47.619 0.00 0.00 0.00 2.29
722 738 0.905337 CGTGAAGAGGAGGAGGGGTT 60.905 60.000 0.00 0.00 0.00 4.11
723 739 1.305381 CGTGAAGAGGAGGAGGGGT 60.305 63.158 0.00 0.00 0.00 4.95
739 755 1.757699 GGGCAATCTAAGGAGAGACGT 59.242 52.381 0.00 0.00 34.35 4.34
837 853 0.541063 TCTACTTCCTCGTGTGGGCA 60.541 55.000 0.00 0.00 0.00 5.36
1211 1229 3.389329 AGTAGCATCGGATCCAAGTGAAT 59.611 43.478 13.41 2.61 0.00 2.57
1224 1242 2.703409 GGCGCACAAGTAGCATCG 59.297 61.111 10.83 0.00 0.00 3.84
1225 1243 2.813179 CGGGCGCACAAGTAGCATC 61.813 63.158 11.77 0.00 0.00 3.91
1226 1244 2.819595 CGGGCGCACAAGTAGCAT 60.820 61.111 11.77 0.00 0.00 3.79
1227 1245 3.818121 AACGGGCGCACAAGTAGCA 62.818 57.895 11.77 0.00 0.00 3.49
1228 1246 3.047877 AACGGGCGCACAAGTAGC 61.048 61.111 11.77 0.00 0.00 3.58
1229 1247 2.860293 CAACGGGCGCACAAGTAG 59.140 61.111 11.77 0.00 0.00 2.57
1230 1248 3.350612 GCAACGGGCGCACAAGTA 61.351 61.111 11.77 0.00 0.00 2.24
1248 1267 3.432252 GGTATCTCGCATTACCAAATCCG 59.568 47.826 0.00 0.00 38.20 4.18
1250 1269 4.083802 GCAGGTATCTCGCATTACCAAATC 60.084 45.833 9.29 0.00 40.33 2.17
1261 1280 1.070445 ATGGCAGCAGGTATCTCGC 59.930 57.895 0.00 0.00 0.00 5.03
1273 1292 3.880047 ATGGTCACAAATTCATGGCAG 57.120 42.857 0.00 0.00 0.00 4.85
1278 1297 6.819284 AGTTCACAAATGGTCACAAATTCAT 58.181 32.000 0.00 0.00 0.00 2.57
1577 1596 3.302740 GCACGAATCGGATTTCATGAGAC 60.303 47.826 7.80 0.00 0.00 3.36
1600 1619 5.448496 GCAACCGTATGCAACATATCTTCAA 60.448 40.000 4.93 0.00 45.70 2.69
1654 1675 9.955102 ACCTTTAAGATCCGTATTTTAAGTTCT 57.045 29.630 0.00 0.00 0.00 3.01
1665 1686 6.761312 TCAAACTGAACCTTTAAGATCCGTA 58.239 36.000 0.00 0.00 0.00 4.02
1700 1731 1.091537 AACAACACAACCACAGACCG 58.908 50.000 0.00 0.00 0.00 4.79
1756 1795 2.238395 ACAACCACCAGGCATTGTTTTT 59.762 40.909 0.00 0.00 39.06 1.94
1757 1796 1.836802 ACAACCACCAGGCATTGTTTT 59.163 42.857 0.00 0.00 39.06 2.43
1758 1797 1.138661 CACAACCACCAGGCATTGTTT 59.861 47.619 1.56 0.00 33.27 2.83
1759 1798 0.752054 CACAACCACCAGGCATTGTT 59.248 50.000 1.56 0.00 33.27 2.83
1760 1799 1.114722 CCACAACCACCAGGCATTGT 61.115 55.000 0.00 0.00 35.23 2.71
1761 1800 0.827089 TCCACAACCACCAGGCATTG 60.827 55.000 0.00 0.00 39.06 2.82
1762 1801 0.114954 ATCCACAACCACCAGGCATT 59.885 50.000 0.00 0.00 39.06 3.56
1763 1802 0.323725 GATCCACAACCACCAGGCAT 60.324 55.000 0.00 0.00 39.06 4.40
1764 1803 1.074775 GATCCACAACCACCAGGCA 59.925 57.895 0.00 0.00 39.06 4.75
1765 1804 1.678970 GGATCCACAACCACCAGGC 60.679 63.158 6.95 0.00 39.06 4.85
1766 1805 0.332632 ATGGATCCACAACCACCAGG 59.667 55.000 18.99 0.00 39.06 4.45
1767 1806 1.466856 CATGGATCCACAACCACCAG 58.533 55.000 18.99 0.00 39.06 4.00
1768 1807 0.039472 CCATGGATCCACAACCACCA 59.961 55.000 18.99 0.00 39.06 4.17
1769 1808 0.331278 TCCATGGATCCACAACCACC 59.669 55.000 18.99 0.00 39.06 4.61
1812 1851 6.761242 TCGGGTTATCACACAATTATCTGAAG 59.239 38.462 0.00 0.00 0.00 3.02
2091 2131 4.100035 TCTTCCTAGCCCATATCGCATATG 59.900 45.833 0.00 0.00 41.75 1.78
2103 2143 3.161866 CAGATAGTCCTCTTCCTAGCCC 58.838 54.545 0.00 0.00 0.00 5.19
2187 2269 8.119226 GTGTTTGAGTCATCTGTATAGCATTTC 58.881 37.037 0.00 0.00 0.00 2.17
2193 2275 8.385858 CAACATGTGTTTGAGTCATCTGTATAG 58.614 37.037 0.00 0.00 35.83 1.31
2196 2278 6.018016 CACAACATGTGTTTGAGTCATCTGTA 60.018 38.462 0.00 0.00 43.08 2.74
2217 2299 7.492344 CACTACACTGATAGAATATGTGCACAA 59.508 37.037 25.72 13.64 32.49 3.33
2230 2312 3.131223 CCCCACACTCACTACACTGATAG 59.869 52.174 0.00 0.00 0.00 2.08
2295 2378 4.273480 CCTCGTCTAATTAAGCAACCATGG 59.727 45.833 11.19 11.19 0.00 3.66
2344 3313 2.117156 GCATGCCAGCAGGTAGGTG 61.117 63.158 6.36 0.00 45.23 4.00
2357 3326 1.134367 AGCACACATCTCAATGCATGC 59.866 47.619 11.82 11.82 42.91 4.06
2618 3590 6.549364 TCCAAACATAGTTGAAACCAGTGAAT 59.451 34.615 0.00 0.00 0.00 2.57
2631 3603 8.893563 TTTTCAGGGATAATCCAAACATAGTT 57.106 30.769 0.00 0.00 38.64 2.24
2674 3646 2.746472 GCACATTACCAGTCCCTCCATC 60.746 54.545 0.00 0.00 0.00 3.51
2675 3647 1.212935 GCACATTACCAGTCCCTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
2824 3797 6.228258 TCAGTGCAAAGTTAAAGTAGGGTAG 58.772 40.000 0.00 0.00 0.00 3.18
2960 3936 1.946768 TGATAAGCTAAATGGGCGCAC 59.053 47.619 10.83 6.04 34.52 5.34
3016 3992 1.132643 CCGCTGTGTGTAGACCTCTAC 59.867 57.143 5.63 5.63 46.78 2.59
3019 3995 1.446272 GCCGCTGTGTGTAGACCTC 60.446 63.158 0.00 0.00 0.00 3.85
3029 4005 2.963854 CATAGCTCCGCCGCTGTG 60.964 66.667 6.90 6.71 41.56 3.66
3210 4186 4.322057 ACAGAAAATATCCCAAGGCTGT 57.678 40.909 0.00 0.00 0.00 4.40
3211 4187 5.529060 GTCTACAGAAAATATCCCAAGGCTG 59.471 44.000 0.00 0.00 0.00 4.85
3212 4188 5.430089 AGTCTACAGAAAATATCCCAAGGCT 59.570 40.000 0.00 0.00 0.00 4.58
3213 4189 5.685728 AGTCTACAGAAAATATCCCAAGGC 58.314 41.667 0.00 0.00 0.00 4.35
3231 4207 4.759953 ACTCTTGGAGGGGTAAAAGTCTA 58.240 43.478 0.00 0.00 33.35 2.59
3280 4294 2.223340 GGTGCAAGAAATGGCATACGAG 60.223 50.000 0.00 0.00 42.75 4.18
3374 4388 5.687285 GCAGTGAAGTAGGTGTTGATTTTTG 59.313 40.000 0.00 0.00 0.00 2.44
3442 4456 9.674824 GATTCCTGCAATTTAAGATAGACATTG 57.325 33.333 0.00 0.00 0.00 2.82
3548 4562 2.418060 GGAGTTCTTCCAGCAGCTCTAC 60.418 54.545 0.00 0.00 46.01 2.59
3577 4591 5.923733 TGAGAGAAGAGAATAGGTTGACC 57.076 43.478 0.00 0.00 0.00 4.02
3847 4862 2.699954 ACAACCCAAATGCTAGTCTCG 58.300 47.619 0.00 0.00 0.00 4.04
3904 4919 0.250727 TAACCTTGCCTCTGTGGTGC 60.251 55.000 0.00 0.00 38.35 5.01
4007 5022 6.201044 CGTATTGAGCAAGGATTACGAAAGAT 59.799 38.462 7.84 0.00 32.22 2.40
4031 5046 2.612972 GGTGAGCATATGGTGGGTATCG 60.613 54.545 13.10 0.00 0.00 2.92
4054 5069 7.905493 GCAAATAAGAGATTGGTAGACTTTTCG 59.095 37.037 0.00 0.00 0.00 3.46
4141 5156 6.782000 CCCATATTCCATTTTCCATACCAGAA 59.218 38.462 0.00 0.00 0.00 3.02
4163 5178 2.266279 CCTCCTAAGGTTCAACTCCCA 58.734 52.381 0.00 0.00 37.94 4.37
4175 5190 1.413077 GGGTGGATTCGACCTCCTAAG 59.587 57.143 16.27 0.00 41.62 2.18
4200 5215 1.996798 AGAGTGTCTCCTTCGGTTCA 58.003 50.000 0.00 0.00 0.00 3.18
4248 5263 5.616488 TGCCCTAAATTGACGTTCTAAAC 57.384 39.130 0.00 0.00 0.00 2.01
4268 5283 6.863126 AGTTCATTACACAATAAACTTGCTGC 59.137 34.615 0.00 0.00 29.69 5.25
4375 5390 2.376808 AAGAGTCAGTCATTCAGGCG 57.623 50.000 0.00 0.00 0.00 5.52
4440 5455 6.357367 ACCAATATAAGTAGACAGGGCAAAG 58.643 40.000 0.00 0.00 0.00 2.77
4560 5575 6.395629 CATGTCATCAATGCCTCTTTTCTTT 58.604 36.000 0.00 0.00 0.00 2.52
5344 6429 5.241662 ACCTTCTTAAGAGAGTGTGCATTC 58.758 41.667 5.12 0.00 32.44 2.67
5430 6516 6.389091 TGCAACCAAGATGATTTGATTGTAC 58.611 36.000 0.00 0.00 0.00 2.90
5482 6568 8.963725 TGCTATAGTACACTGAAGCTAAAGTTA 58.036 33.333 14.85 0.00 36.57 2.24
5485 6571 7.043059 GCTTGCTATAGTACACTGAAGCTAAAG 60.043 40.741 14.85 12.43 36.57 1.85
5554 6681 0.662085 GCTGCAGAGGAAATGCTAGC 59.338 55.000 20.43 8.10 44.17 3.42
5573 6700 6.575083 CACGGTAAGTGTATCATCAGAAAG 57.425 41.667 0.00 0.00 45.51 2.62
5693 6820 2.603652 GCACACGGTGTAATCAACCAAC 60.604 50.000 14.30 0.00 35.75 3.77
5725 6853 9.403110 CACAAAACCAAATGAAAATTCAACAAA 57.597 25.926 0.00 0.00 41.13 2.83
5758 6886 4.461992 CAAGCATGCAAAAACTTCTTGG 57.538 40.909 21.98 0.00 0.00 3.61
5774 6902 3.372730 GCCCGTTGGATGCAAGCA 61.373 61.111 0.00 0.00 0.00 3.91
5855 6983 4.458989 TCACATCCCTACACAAAGCAATTC 59.541 41.667 0.00 0.00 0.00 2.17
6131 7264 1.403780 CGGACGGAGGGAGTACAAAAG 60.404 57.143 0.00 0.00 0.00 2.27
6136 7335 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
6149 7348 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
6151 7350 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
6152 7351 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
6158 7357 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
6164 7363 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
6166 7365 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
6167 7366 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
6168 7367 8.893563 TTAGATACATCCCTTTTTGTCCATTT 57.106 30.769 0.00 0.00 0.00 2.32
6170 7369 8.749354 GTTTTAGATACATCCCTTTTTGTCCAT 58.251 33.333 0.00 0.00 0.00 3.41
6171 7370 7.947890 AGTTTTAGATACATCCCTTTTTGTCCA 59.052 33.333 0.00 0.00 0.00 4.02
6172 7371 8.349568 AGTTTTAGATACATCCCTTTTTGTCC 57.650 34.615 0.00 0.00 0.00 4.02
6232 7513 5.128663 TCCGTCTGGAAATACTCATCATCAA 59.871 40.000 0.00 0.00 42.85 2.57
6234 7515 5.201713 TCCGTCTGGAAATACTCATCATC 57.798 43.478 0.00 0.00 42.85 2.92
6238 7519 2.700897 CCCTCCGTCTGGAAATACTCAT 59.299 50.000 0.00 0.00 45.87 2.90
6240 7521 2.362717 CTCCCTCCGTCTGGAAATACTC 59.637 54.545 0.00 0.00 45.87 2.59
6242 7523 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
6243 7524 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
6248 7529 1.212441 ACTACTACTCCCTCCGTCTGG 59.788 57.143 0.00 0.00 0.00 3.86
6249 7530 2.290464 CACTACTACTCCCTCCGTCTG 58.710 57.143 0.00 0.00 0.00 3.51
6250 7531 1.914798 ACACTACTACTCCCTCCGTCT 59.085 52.381 0.00 0.00 0.00 4.18
6251 7532 2.416680 ACACTACTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
6252 7533 4.516652 AATACACTACTACTCCCTCCGT 57.483 45.455 0.00 0.00 0.00 4.69
6253 7534 8.804912 ATATAAATACACTACTACTCCCTCCG 57.195 38.462 0.00 0.00 0.00 4.63
6602 7891 5.082425 AGATCATGAAAGCAAGGTTCCTTT 58.918 37.500 0.00 0.00 34.22 3.11
6632 7921 6.814954 AGCTGATAGAAGTGGATAGGAAAA 57.185 37.500 0.00 0.00 0.00 2.29
6635 7924 5.710646 AGAAGCTGATAGAAGTGGATAGGA 58.289 41.667 0.00 0.00 0.00 2.94
6760 8054 2.556622 TCTTCATGCAGAGTACACGTCA 59.443 45.455 0.00 0.00 0.00 4.35
6803 8097 6.446781 AGTATCAAAATCACAAGCCAGATG 57.553 37.500 0.00 0.00 0.00 2.90
7003 8298 5.728637 AGGAAAAGGAAAGCCATGTTTAG 57.271 39.130 0.00 0.00 36.29 1.85
7004 8299 6.780522 ACTTAGGAAAAGGAAAGCCATGTTTA 59.219 34.615 0.00 0.00 36.29 2.01
7005 8300 5.602561 ACTTAGGAAAAGGAAAGCCATGTTT 59.397 36.000 0.00 0.00 36.29 2.83
7006 8301 5.147767 ACTTAGGAAAAGGAAAGCCATGTT 58.852 37.500 0.00 0.00 36.29 2.71
7007 8302 4.740902 ACTTAGGAAAAGGAAAGCCATGT 58.259 39.130 0.00 0.00 36.29 3.21
7008 8303 4.158579 GGACTTAGGAAAAGGAAAGCCATG 59.841 45.833 0.00 0.00 36.29 3.66
7009 8304 4.044698 AGGACTTAGGAAAAGGAAAGCCAT 59.955 41.667 0.00 0.00 36.29 4.40
7010 8305 3.397955 AGGACTTAGGAAAAGGAAAGCCA 59.602 43.478 0.00 0.00 36.29 4.75
7011 8306 4.035612 AGGACTTAGGAAAAGGAAAGCC 57.964 45.455 0.00 0.00 0.00 4.35
7046 8341 3.217599 TGTCGTACATGCTCTCTTCAC 57.782 47.619 0.00 0.00 0.00 3.18
7164 8494 4.525487 ACCTGATCAACATGCAAAGAACAT 59.475 37.500 0.00 0.00 0.00 2.71
7203 8533 1.134491 GGCTGCCCAGTACGATTTACT 60.134 52.381 7.66 0.00 0.00 2.24
7328 8658 9.487790 CCAAAGATTATGCTTTAGGTTTCAAAA 57.512 29.630 0.00 0.00 36.39 2.44
7329 8659 8.093927 CCCAAAGATTATGCTTTAGGTTTCAAA 58.906 33.333 0.00 0.00 36.39 2.69
7330 8660 7.234577 ACCCAAAGATTATGCTTTAGGTTTCAA 59.765 33.333 0.00 0.00 44.01 2.69
7331 8661 6.723977 ACCCAAAGATTATGCTTTAGGTTTCA 59.276 34.615 0.00 0.00 44.01 2.69
7332 8662 7.170393 ACCCAAAGATTATGCTTTAGGTTTC 57.830 36.000 0.00 0.00 44.01 2.78
7335 8665 7.179269 TGTAACCCAAAGATTATGCTTTAGGT 58.821 34.615 0.00 0.00 46.90 3.08
7336 8666 7.639113 TGTAACCCAAAGATTATGCTTTAGG 57.361 36.000 0.00 0.00 40.86 2.69
7337 8667 8.902806 TGATGTAACCCAAAGATTATGCTTTAG 58.097 33.333 0.00 0.00 36.39 1.85
7338 8668 8.815565 TGATGTAACCCAAAGATTATGCTTTA 57.184 30.769 0.00 0.00 36.39 1.85
7339 8669 7.716799 TGATGTAACCCAAAGATTATGCTTT 57.283 32.000 0.00 0.00 38.57 3.51
7340 8670 7.902920 ATGATGTAACCCAAAGATTATGCTT 57.097 32.000 0.00 0.00 0.00 3.91
7341 8671 7.998383 TGTATGATGTAACCCAAAGATTATGCT 59.002 33.333 0.00 0.00 0.00 3.79
7342 8672 8.165239 TGTATGATGTAACCCAAAGATTATGC 57.835 34.615 0.00 0.00 0.00 3.14
7346 8676 8.531146 CCTTTTGTATGATGTAACCCAAAGATT 58.469 33.333 0.00 0.00 0.00 2.40
7347 8677 7.124147 CCCTTTTGTATGATGTAACCCAAAGAT 59.876 37.037 0.00 0.00 0.00 2.40
7348 8678 6.435904 CCCTTTTGTATGATGTAACCCAAAGA 59.564 38.462 0.00 0.00 0.00 2.52
7349 8679 6.435904 TCCCTTTTGTATGATGTAACCCAAAG 59.564 38.462 0.00 0.00 0.00 2.77
7350 8680 6.315714 TCCCTTTTGTATGATGTAACCCAAA 58.684 36.000 0.00 0.00 0.00 3.28
7351 8681 5.893500 TCCCTTTTGTATGATGTAACCCAA 58.106 37.500 0.00 0.00 0.00 4.12
7352 8682 5.522315 TCCCTTTTGTATGATGTAACCCA 57.478 39.130 0.00 0.00 0.00 4.51
7372 8702 3.774216 CTCCTCCAGGGAATATCTCATCC 59.226 52.174 0.00 0.00 44.58 3.51
7534 8864 2.161609 GGCAGATAGGTGTTTCAAACCG 59.838 50.000 0.00 0.00 42.89 4.44
7697 9027 3.201290 ACGCTCAAGAGAATAATGCAGG 58.799 45.455 0.32 0.00 0.00 4.85
7713 9043 7.422399 AGAGAACTATCTATCTCAAAACGCTC 58.578 38.462 5.67 0.00 43.62 5.03
7757 9087 9.575783 GTTCCAAAATACTAAGTAGTCTGAGAG 57.424 37.037 0.00 0.00 37.73 3.20
7772 9102 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
7824 9182 2.259618 GCTGCACAATCAAAGCATCAG 58.740 47.619 0.00 0.00 37.68 2.90
8117 9475 0.880278 TGGCAACTTCAGTGCGAGTC 60.880 55.000 0.00 0.00 37.61 3.36
8137 9495 1.803334 TCCCGGACACAAAATTCGAG 58.197 50.000 0.73 0.00 0.00 4.04
8167 9532 3.072211 GCTGAACAAGTAGTACCCCAAC 58.928 50.000 0.00 0.00 0.00 3.77
8174 9539 2.667448 CGCTGACGCTGAACAAGTAGTA 60.667 50.000 0.00 0.00 0.00 1.82
8175 9540 1.784525 GCTGACGCTGAACAAGTAGT 58.215 50.000 0.00 0.00 0.00 2.73
8176 9541 0.710567 CGCTGACGCTGAACAAGTAG 59.289 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.