Multiple sequence alignment - TraesCS6B01G236100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G236100 chr6B 100.000 4207 0 0 1 4207 404992801 404988595 0.000000e+00 7769.0
1 TraesCS6B01G236100 chr6B 88.028 142 14 2 3788 3929 468734596 468734458 9.360000e-37 165.0
2 TraesCS6B01G236100 chr6B 95.122 41 0 2 442 481 467666247 467666286 3.510000e-06 63.9
3 TraesCS6B01G236100 chr6B 95.122 41 0 2 442 481 467731108 467731147 3.510000e-06 63.9
4 TraesCS6B01G236100 chr6D 94.335 3513 124 25 486 3977 263942814 263939356 0.000000e+00 5315.0
5 TraesCS6B01G236100 chr6D 90.000 400 36 4 1 399 263943311 263942915 8.070000e-142 514.0
6 TraesCS6B01G236100 chr6D 94.468 235 5 3 3973 4207 263933862 263933636 5.170000e-94 355.0
7 TraesCS6B01G236100 chr6D 78.866 194 27 9 1 181 150500492 150500300 7.390000e-23 119.0
8 TraesCS6B01G236100 chr6D 82.143 84 10 5 401 481 194359938 194359857 2.710000e-07 67.6
9 TraesCS6B01G236100 chr6A 93.559 1863 76 22 486 2334 371724302 371726134 0.000000e+00 2736.0
10 TraesCS6B01G236100 chr6A 93.230 1477 88 6 2395 3860 371726135 371727610 0.000000e+00 2163.0
11 TraesCS6B01G236100 chr6A 92.771 249 16 2 1 248 371723886 371724133 4.000000e-95 359.0
12 TraesCS6B01G236100 chr6A 86.066 244 13 9 3858 4086 371728083 371727846 4.200000e-60 243.0
13 TraesCS6B01G236100 chr6A 87.395 119 7 6 4086 4204 371732946 371733056 3.410000e-26 130.0
14 TraesCS6B01G236100 chr2D 84.354 294 30 3 1 278 233394528 233394821 1.490000e-69 274.0
15 TraesCS6B01G236100 chr2D 86.316 95 12 1 398 491 161904911 161905005 7.440000e-18 102.0
16 TraesCS6B01G236100 chr2D 91.429 70 6 0 2342 2411 61023779 61023710 3.460000e-16 97.1
17 TraesCS6B01G236100 chr2D 91.429 70 6 0 2342 2411 78530076 78530007 3.460000e-16 97.1
18 TraesCS6B01G236100 chr2A 84.091 220 20 2 1 205 286439334 286439553 9.230000e-47 198.0
19 TraesCS6B01G236100 chr2A 87.023 131 17 0 3788 3918 330080203 330080073 9.420000e-32 148.0
20 TraesCS6B01G236100 chr2A 94.737 38 0 2 678 715 160133276 160133241 1.630000e-04 58.4
21 TraesCS6B01G236100 chr4D 88.806 134 14 1 3788 3920 74079482 74079349 3.370000e-36 163.0
22 TraesCS6B01G236100 chr4D 86.395 147 20 0 3772 3918 428587940 428587794 1.210000e-35 161.0
23 TraesCS6B01G236100 chr4D 83.516 91 13 1 2323 2411 450202795 450202705 2.700000e-12 84.2
24 TraesCS6B01G236100 chr4D 95.122 41 0 2 442 481 151420498 151420459 3.510000e-06 63.9
25 TraesCS6B01G236100 chr5D 88.636 132 14 1 3788 3918 175300035 175299904 4.350000e-35 159.0
26 TraesCS6B01G236100 chr5D 84.314 153 22 2 123 274 126515300 126515451 9.420000e-32 148.0
27 TraesCS6B01G236100 chr1B 88.550 131 15 0 3788 3918 667230496 667230626 4.350000e-35 159.0
28 TraesCS6B01G236100 chr1B 83.871 124 9 6 2290 2411 332084694 332084808 1.600000e-19 108.0
29 TraesCS6B01G236100 chr3A 85.430 151 20 2 125 274 308797099 308797248 5.630000e-34 156.0
30 TraesCS6B01G236100 chr3A 88.235 85 9 1 398 481 530204851 530204767 2.680000e-17 100.0
31 TraesCS6B01G236100 chr1D 84.967 153 21 2 123 274 138145526 138145677 2.030000e-33 154.0
32 TraesCS6B01G236100 chr1D 84.314 153 22 2 123 274 354658006 354658157 9.420000e-32 148.0
33 TraesCS6B01G236100 chr4A 85.034 147 22 0 3772 3918 37806912 37807058 2.620000e-32 150.0
34 TraesCS6B01G236100 chr4A 84.043 94 13 1 2320 2411 16470310 16470403 5.790000e-14 89.8
35 TraesCS6B01G236100 chrUn 84.314 153 22 2 123 274 477221828 477221677 9.420000e-32 148.0
36 TraesCS6B01G236100 chrUn 97.143 35 1 0 395 429 49212443 49212477 4.540000e-05 60.2
37 TraesCS6B01G236100 chrUn 97.143 35 1 0 395 429 273542835 273542869 4.540000e-05 60.2
38 TraesCS6B01G236100 chr5A 84.314 153 22 2 123 274 359569628 359569477 9.420000e-32 148.0
39 TraesCS6B01G236100 chr5A 92.683 41 3 0 398 438 644112494 644112454 4.540000e-05 60.2
40 TraesCS6B01G236100 chr1A 94.286 70 4 0 2342 2411 307036809 307036740 1.600000e-19 108.0
41 TraesCS6B01G236100 chr5B 88.506 87 5 3 398 481 40880215 40880299 2.680000e-17 100.0
42 TraesCS6B01G236100 chr2B 91.429 70 6 0 2342 2411 121669461 121669392 3.460000e-16 97.1
43 TraesCS6B01G236100 chr2B 94.286 35 1 1 398 432 539937168 539937201 8.000000e-03 52.8
44 TraesCS6B01G236100 chr4B 81.416 113 20 1 1 112 399747913 399747801 1.610000e-14 91.6
45 TraesCS6B01G236100 chr4B 83.516 91 13 1 2323 2411 563209615 563209525 2.700000e-12 84.2
46 TraesCS6B01G236100 chr3B 86.047 86 10 2 270 354 456606577 456606661 1.610000e-14 91.6
47 TraesCS6B01G236100 chr3B 95.122 41 0 2 442 481 529344072 529344111 3.510000e-06 63.9
48 TraesCS6B01G236100 chr3B 96.970 33 1 0 398 430 816313626 816313594 5.880000e-04 56.5
49 TraesCS6B01G236100 chr7A 95.122 41 0 2 442 481 68488580 68488619 3.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G236100 chr6B 404988595 404992801 4206 True 7769.000000 7769 100.000000 1 4207 1 chr6B.!!$R1 4206
1 TraesCS6B01G236100 chr6D 263939356 263943311 3955 True 2914.500000 5315 92.167500 1 3977 2 chr6D.!!$R4 3976
2 TraesCS6B01G236100 chr6A 371723886 371727610 3724 False 1752.666667 2736 93.186667 1 3860 3 chr6A.!!$F2 3859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 1.314730 TTCCTTGGTTGAACGAAGCC 58.685 50.0 13.65 0.0 33.35 4.35 F
1126 1184 0.468226 TTCTGGTGATCCCATACGCC 59.532 55.0 3.70 0.0 44.15 5.68 F
1561 1620 0.904649 TTCTGCCGATCACAGGACAT 59.095 50.0 11.68 0.0 35.78 3.06 F
1804 1870 2.029380 GCACAACCAAAAGGGGTATGTC 60.029 50.0 0.00 0.0 41.32 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1870 0.179029 AACCGTCCACCAGGTGAAAG 60.179 55.000 22.37 2.23 41.21 2.62 R
2448 2514 1.148310 AGCCACAACAGATTTCGACG 58.852 50.000 0.00 0.00 0.00 5.12 R
3103 3171 1.471684 CCTCTCTTTTGCTGCACATCC 59.528 52.381 0.00 0.00 0.00 3.51 R
3515 3587 2.987149 ACGAAATAGTTGAGCGTCAGTG 59.013 45.455 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.314730 TTCCTTGGTTGAACGAAGCC 58.685 50.000 13.65 0.00 33.35 4.35
54 56 2.989840 CTCGTGTGAGTTCCAAGTGATC 59.010 50.000 0.00 0.00 37.46 2.92
60 62 5.809562 GTGTGAGTTCCAAGTGATCTCATAG 59.190 44.000 6.31 0.00 46.35 2.23
66 68 6.656693 AGTTCCAAGTGATCTCATAGGTTTTG 59.343 38.462 0.00 0.00 0.00 2.44
97 99 5.600908 ACTTTGCATGCAATTTGTGAATC 57.399 34.783 32.27 0.00 35.70 2.52
98 100 5.302360 ACTTTGCATGCAATTTGTGAATCT 58.698 33.333 32.27 7.45 35.70 2.40
140 142 6.024552 TCTTTAATTTTGTGCCACTCATCC 57.975 37.500 0.00 0.00 0.00 3.51
194 196 5.408299 TGTAGGTGTGAAATTGACAAGATCG 59.592 40.000 0.00 0.00 0.00 3.69
196 198 3.751175 GGTGTGAAATTGACAAGATCGGA 59.249 43.478 0.00 0.00 0.00 4.55
211 213 5.776173 AGATCGGACACCAATTCTAGTAG 57.224 43.478 0.00 0.00 0.00 2.57
214 216 4.338012 TCGGACACCAATTCTAGTAGTCA 58.662 43.478 0.00 0.00 0.00 3.41
250 252 5.536260 TCGAGTGATCATTGATCCATCTTC 58.464 41.667 21.08 11.49 38.20 2.87
253 255 6.292757 CGAGTGATCATTGATCCATCTTCAAC 60.293 42.308 21.08 11.39 38.20 3.18
288 290 4.618378 AATTTGGATTGGGGTTAGGCTA 57.382 40.909 0.00 0.00 0.00 3.93
310 312 9.000486 GGCTAATACCATGTAAAAGGAATAGAC 58.000 37.037 0.00 0.00 0.00 2.59
321 323 4.510167 AAGGAATAGACAGGGATTGGTG 57.490 45.455 0.00 0.00 0.00 4.17
323 325 4.111577 AGGAATAGACAGGGATTGGTGAA 58.888 43.478 0.00 0.00 0.00 3.18
327 329 6.183360 GGAATAGACAGGGATTGGTGAAATTG 60.183 42.308 0.00 0.00 0.00 2.32
333 335 5.047092 ACAGGGATTGGTGAAATTGTTGATC 60.047 40.000 0.00 0.00 0.00 2.92
363 365 4.424566 CCTTGTGGGCATGCACGC 62.425 66.667 26.53 26.53 0.00 5.34
364 366 4.764336 CTTGTGGGCATGCACGCG 62.764 66.667 27.18 11.37 31.48 6.01
411 453 4.841246 AGTACAAGATACTCCATCCATCCC 59.159 45.833 0.00 0.00 33.75 3.85
413 455 4.246143 ACAAGATACTCCATCCATCCCAT 58.754 43.478 0.00 0.00 33.75 4.00
414 456 5.415065 ACAAGATACTCCATCCATCCCATA 58.585 41.667 0.00 0.00 33.75 2.74
420 462 9.973880 AGATACTCCATCCATCCCATAATATAA 57.026 33.333 0.00 0.00 33.75 0.98
422 464 9.973880 ATACTCCATCCATCCCATAATATAAGA 57.026 33.333 0.00 0.00 0.00 2.10
424 466 7.124573 TCCATCCATCCCATAATATAAGACG 57.875 40.000 0.00 0.00 0.00 4.18
454 499 9.705471 TTTGTTACTACATTAGTGTCAAAAACG 57.295 29.630 0.00 0.00 38.44 3.60
457 502 9.706846 GTTACTACATTAGTGTCAAAAACGTTT 57.293 29.630 7.96 7.96 39.81 3.60
460 505 9.706846 ACTACATTAGTGTCAAAAACGTTTTAC 57.293 29.630 25.44 20.33 39.77 2.01
461 506 9.705471 CTACATTAGTGTCAAAAACGTTTTACA 57.295 29.630 25.44 22.48 39.77 2.41
463 508 9.575783 ACATTAGTGTCAAAAACGTTTTACATT 57.424 25.926 25.44 22.80 34.31 2.71
468 513 9.015577 AGTGTCAAAAACGTTTTACATTATGTG 57.984 29.630 25.44 16.90 34.31 3.21
469 514 9.011407 GTGTCAAAAACGTTTTACATTATGTGA 57.989 29.630 25.44 18.73 34.31 3.58
470 515 9.011407 TGTCAAAAACGTTTTACATTATGTGAC 57.989 29.630 27.72 27.72 28.22 3.67
471 516 8.196241 GTCAAAAACGTTTTACATTATGTGACG 58.804 33.333 25.44 20.43 37.96 4.35
472 517 7.376336 TCAAAAACGTTTTACATTATGTGACGG 59.624 33.333 25.44 12.50 37.06 4.79
473 518 6.542574 AAACGTTTTACATTATGTGACGGA 57.457 33.333 23.43 0.00 37.06 4.69
474 519 5.773239 ACGTTTTACATTATGTGACGGAG 57.227 39.130 23.43 9.75 37.06 4.63
475 520 4.628333 ACGTTTTACATTATGTGACGGAGG 59.372 41.667 23.43 9.14 37.06 4.30
476 521 4.033587 CGTTTTACATTATGTGACGGAGGG 59.966 45.833 8.26 0.00 32.73 4.30
477 522 5.180271 GTTTTACATTATGTGACGGAGGGA 58.820 41.667 8.26 0.00 0.00 4.20
478 523 4.665833 TTACATTATGTGACGGAGGGAG 57.334 45.455 8.26 0.00 0.00 4.30
479 524 2.467880 ACATTATGTGACGGAGGGAGT 58.532 47.619 0.00 0.00 0.00 3.85
480 525 3.638860 ACATTATGTGACGGAGGGAGTA 58.361 45.455 0.00 0.00 0.00 2.59
481 526 4.028131 ACATTATGTGACGGAGGGAGTAA 58.972 43.478 0.00 0.00 0.00 2.24
482 527 4.468510 ACATTATGTGACGGAGGGAGTAAA 59.531 41.667 0.00 0.00 0.00 2.01
483 528 5.046159 ACATTATGTGACGGAGGGAGTAAAA 60.046 40.000 0.00 0.00 0.00 1.52
484 529 2.825861 TGTGACGGAGGGAGTAAAAC 57.174 50.000 0.00 0.00 0.00 2.43
561 606 9.243637 GACACAAAACATTTTCTAAACTATGCA 57.756 29.630 0.00 0.00 0.00 3.96
633 681 3.054276 TGCGTGAACGTGTTTTAAAGG 57.946 42.857 4.59 0.00 42.22 3.11
764 817 7.224362 TGCATAAACATTTTTCCAAAGTCACAG 59.776 33.333 0.00 0.00 0.00 3.66
806 859 2.494471 CGTGTACTGGACCCTAATGTCA 59.506 50.000 0.00 0.00 36.97 3.58
808 861 4.382685 CGTGTACTGGACCCTAATGTCATT 60.383 45.833 3.06 3.06 36.97 2.57
1126 1184 0.468226 TTCTGGTGATCCCATACGCC 59.532 55.000 3.70 0.00 44.15 5.68
1183 1241 5.637809 TGTTATCGATGATATACGTGAGCC 58.362 41.667 8.54 0.00 0.00 4.70
1196 1254 9.903682 GATATACGTGAGCCTTTTAGTTATGTA 57.096 33.333 0.00 0.00 0.00 2.29
1288 1346 7.876582 GGAATTGTTGTGTAGGTAGTTAGTCTT 59.123 37.037 0.00 0.00 0.00 3.01
1352 1411 1.915141 ATTGCTGGAAGGTGGTTCAG 58.085 50.000 0.00 0.00 36.82 3.02
1376 1435 2.825205 TGACCGTGATCTATGTGCATG 58.175 47.619 0.00 0.00 0.00 4.06
1410 1469 1.605710 CCCATCCATGACAAGCGATTC 59.394 52.381 0.00 0.00 0.00 2.52
1431 1490 9.613957 CGATTCTATGAATTATCAGTTCGTACT 57.386 33.333 0.00 0.00 39.39 2.73
1456 1515 7.220030 TGCAAAGGATAGGAAGATCTGTTATC 58.780 38.462 0.00 4.59 0.00 1.75
1458 1517 7.172361 GCAAAGGATAGGAAGATCTGTTATCAC 59.828 40.741 16.79 10.12 0.00 3.06
1459 1518 6.926630 AGGATAGGAAGATCTGTTATCACC 57.073 41.667 16.79 8.42 0.00 4.02
1461 1520 5.544176 GGATAGGAAGATCTGTTATCACCCA 59.456 44.000 16.79 0.00 0.00 4.51
1462 1521 6.214412 GGATAGGAAGATCTGTTATCACCCAT 59.786 42.308 16.79 2.16 0.00 4.00
1463 1522 5.301835 AGGAAGATCTGTTATCACCCATG 57.698 43.478 0.00 0.00 0.00 3.66
1464 1523 4.723789 AGGAAGATCTGTTATCACCCATGT 59.276 41.667 0.00 0.00 0.00 3.21
1465 1524 5.192522 AGGAAGATCTGTTATCACCCATGTT 59.807 40.000 0.00 0.00 0.00 2.71
1466 1525 5.888161 GGAAGATCTGTTATCACCCATGTTT 59.112 40.000 0.00 0.00 0.00 2.83
1467 1526 7.054124 GGAAGATCTGTTATCACCCATGTTTA 58.946 38.462 0.00 0.00 0.00 2.01
1468 1527 7.721399 GGAAGATCTGTTATCACCCATGTTTAT 59.279 37.037 0.00 0.00 0.00 1.40
1469 1528 9.778741 GAAGATCTGTTATCACCCATGTTTATA 57.221 33.333 0.00 0.00 0.00 0.98
1473 1532 9.672673 ATCTGTTATCACCCATGTTTATATAGC 57.327 33.333 0.00 0.00 0.00 2.97
1474 1533 8.100791 TCTGTTATCACCCATGTTTATATAGCC 58.899 37.037 0.00 0.00 0.00 3.93
1513 1572 5.184892 AGAAGCATTGTTGTCCTATCCTT 57.815 39.130 0.00 0.00 0.00 3.36
1533 1592 4.501921 CCTTATGCTTTACTAACGTCGGTC 59.498 45.833 0.00 0.00 0.00 4.79
1556 1615 3.911989 GCATTTCTGCCGATCACAG 57.088 52.632 6.43 6.43 42.88 3.66
1561 1620 0.904649 TTCTGCCGATCACAGGACAT 59.095 50.000 11.68 0.00 35.78 3.06
1572 1631 5.812127 CGATCACAGGACATATGAACAAAGA 59.188 40.000 10.38 1.17 0.00 2.52
1577 1636 8.154203 TCACAGGACATATGAACAAAGAACTTA 58.846 33.333 10.38 0.00 0.00 2.24
1630 1689 5.449177 GCTTGTATATGAGCCTTGTGGTTTC 60.449 44.000 0.18 0.00 35.27 2.78
1632 1691 5.185454 TGTATATGAGCCTTGTGGTTTCAG 58.815 41.667 0.00 0.00 34.38 3.02
1642 1701 3.940209 TGTGGTTTCAGATTGAATGGC 57.060 42.857 0.00 0.00 36.11 4.40
1804 1870 2.029380 GCACAACCAAAAGGGGTATGTC 60.029 50.000 0.00 0.00 41.32 3.06
2411 2477 7.985476 ACATTTAATATTGAACGAAGGGAGTG 58.015 34.615 0.00 0.00 0.00 3.51
2422 2488 5.881923 ACGAAGGGAGTGGCTATTAATAA 57.118 39.130 0.00 0.00 0.00 1.40
2448 2514 8.406172 TGCAGAAATTAGTTTTTCTTGTGTTC 57.594 30.769 0.00 0.00 41.95 3.18
2464 2530 3.000825 TGTGTTCGTCGAAATCTGTTGTG 59.999 43.478 9.70 0.00 0.00 3.33
2470 2536 3.185594 CGTCGAAATCTGTTGTGGCTAAA 59.814 43.478 0.00 0.00 0.00 1.85
2524 2590 8.664079 AGTTTGATTACTGATATGCTCCCTTAT 58.336 33.333 0.00 0.00 0.00 1.73
2713 2779 4.015084 AGCAAGTTTGGATTCCATCTCTG 58.985 43.478 6.15 9.89 31.53 3.35
2804 2870 3.194968 CAGAGATGGGCAAAAGAAATGCT 59.805 43.478 0.00 0.00 43.34 3.79
3103 3171 7.510549 TGAACCTAAACTTTTCTTCATCTGG 57.489 36.000 0.00 0.00 0.00 3.86
3251 3319 5.927115 GGCACCTGTAGCATTACTAATAGAC 59.073 44.000 0.00 0.00 30.90 2.59
3348 3416 0.469331 CCTCCCTATCCTGGTGCGTA 60.469 60.000 0.00 0.00 0.00 4.42
3409 3480 5.669477 AGCTGAAGAGGTCTATGAATTGTC 58.331 41.667 0.00 0.00 0.00 3.18
3410 3481 4.505922 GCTGAAGAGGTCTATGAATTGTCG 59.494 45.833 0.00 0.00 0.00 4.35
3411 3482 5.655488 CTGAAGAGGTCTATGAATTGTCGT 58.345 41.667 0.00 0.00 0.00 4.34
3451 3523 3.422217 GCAGTTTTTACTTTTGCTCGAGC 59.578 43.478 30.42 30.42 42.50 5.03
3465 3537 4.703645 GCTCGAGCATCTGTATATACCA 57.296 45.455 31.91 0.00 41.59 3.25
3471 3543 6.094186 TCGAGCATCTGTATATACCATCAGAC 59.906 42.308 10.38 0.00 39.27 3.51
3510 3582 1.810151 GCAGAGGTTATTCCGCAAACA 59.190 47.619 0.00 0.00 41.99 2.83
3515 3587 4.636206 AGAGGTTATTCCGCAAACATCTTC 59.364 41.667 0.00 0.00 42.30 2.87
3525 3597 2.412065 GCAAACATCTTCACTGACGCTC 60.412 50.000 0.00 0.00 0.00 5.03
3537 3609 4.083164 TCACTGACGCTCAACTATTTCGTA 60.083 41.667 0.00 0.00 33.21 3.43
3551 3623 5.924825 ACTATTTCGTACAAAGTCTGTCCAC 59.075 40.000 0.00 0.00 39.64 4.02
3671 3745 5.186198 AGTTGTACACTTGAAGAGTTGCTT 58.814 37.500 0.00 0.00 36.10 3.91
3721 3795 4.521639 AGACAATGACACAATGACAATGCT 59.478 37.500 0.00 0.00 28.54 3.79
3779 3853 4.340950 ACAAACACAAAATGGTACTCCCTG 59.659 41.667 0.00 0.00 0.00 4.45
3812 3892 8.875803 CAAGATGTTTTGGATATTTCAACATGG 58.124 33.333 0.00 0.00 38.02 3.66
3813 3893 7.558604 AGATGTTTTGGATATTTCAACATGGG 58.441 34.615 0.00 0.00 38.02 4.00
3827 3907 4.941263 TCAACATGGGCTACATACAAACTC 59.059 41.667 0.00 0.00 37.84 3.01
3891 3971 5.049954 TCCGATTCACAAAAAGGTTAGAACG 60.050 40.000 0.00 0.00 0.00 3.95
3896 3976 6.114221 TCACAAAAAGGTTAGAACGTCTTG 57.886 37.500 0.00 7.68 0.00 3.02
3902 3982 8.953990 CAAAAAGGTTAGAACGTCTTGTATTTG 58.046 33.333 0.00 0.00 0.00 2.32
3907 3987 7.042254 AGGTTAGAACGTCTTGTATTTGTGAAC 60.042 37.037 0.00 0.00 0.00 3.18
3923 4003 5.057843 TGTGAACGGAGGGAGTAGTATAT 57.942 43.478 0.00 0.00 0.00 0.86
3924 4004 5.068636 TGTGAACGGAGGGAGTAGTATATC 58.931 45.833 0.00 0.00 0.00 1.63
3958 4038 4.139786 CACACCCAGATGCAAAGCTATAT 58.860 43.478 0.00 0.00 0.00 0.86
3965 4045 7.561356 ACCCAGATGCAAAGCTATATTTTTAGT 59.439 33.333 0.00 0.00 0.00 2.24
3986 4066 6.305693 AGTCTTTGTAAAGATGTGAGTTGC 57.694 37.500 9.98 0.00 45.83 4.17
3987 4067 5.050091 AGTCTTTGTAAAGATGTGAGTTGCG 60.050 40.000 9.98 0.00 45.83 4.85
3988 4068 5.050363 GTCTTTGTAAAGATGTGAGTTGCGA 60.050 40.000 9.98 0.00 45.83 5.10
3989 4069 4.725556 TTGTAAAGATGTGAGTTGCGAC 57.274 40.909 0.00 0.00 0.00 5.19
3990 4070 2.729360 TGTAAAGATGTGAGTTGCGACG 59.271 45.455 0.00 0.00 0.00 5.12
3991 4071 1.148310 AAAGATGTGAGTTGCGACGG 58.852 50.000 0.00 0.00 0.00 4.79
3992 4072 0.033504 AAGATGTGAGTTGCGACGGT 59.966 50.000 0.00 0.00 0.00 4.83
3993 4073 0.388649 AGATGTGAGTTGCGACGGTC 60.389 55.000 0.00 0.00 0.00 4.79
3994 4074 0.388649 GATGTGAGTTGCGACGGTCT 60.389 55.000 6.57 0.00 0.00 3.85
3995 4075 0.667487 ATGTGAGTTGCGACGGTCTG 60.667 55.000 6.57 1.33 0.00 3.51
3996 4076 1.299926 GTGAGTTGCGACGGTCTGT 60.300 57.895 6.57 0.00 0.00 3.41
3997 4077 0.874607 GTGAGTTGCGACGGTCTGTT 60.875 55.000 6.57 0.00 0.00 3.16
3998 4078 0.596600 TGAGTTGCGACGGTCTGTTC 60.597 55.000 6.57 0.00 0.00 3.18
3999 4079 0.596600 GAGTTGCGACGGTCTGTTCA 60.597 55.000 6.57 0.00 0.00 3.18
4000 4080 0.033504 AGTTGCGACGGTCTGTTCAT 59.966 50.000 6.57 0.00 0.00 2.57
4001 4081 0.865769 GTTGCGACGGTCTGTTCATT 59.134 50.000 6.57 0.00 0.00 2.57
4002 4082 1.263217 GTTGCGACGGTCTGTTCATTT 59.737 47.619 6.57 0.00 0.00 2.32
4003 4083 1.144969 TGCGACGGTCTGTTCATTTC 58.855 50.000 6.57 0.00 0.00 2.17
4004 4084 1.144969 GCGACGGTCTGTTCATTTCA 58.855 50.000 6.57 0.00 0.00 2.69
4005 4085 1.732259 GCGACGGTCTGTTCATTTCAT 59.268 47.619 6.57 0.00 0.00 2.57
4006 4086 2.159627 GCGACGGTCTGTTCATTTCATT 59.840 45.455 6.57 0.00 0.00 2.57
4007 4087 3.369756 GCGACGGTCTGTTCATTTCATTA 59.630 43.478 6.57 0.00 0.00 1.90
4008 4088 4.492570 GCGACGGTCTGTTCATTTCATTAG 60.493 45.833 6.57 0.00 0.00 1.73
4009 4089 4.625742 CGACGGTCTGTTCATTTCATTAGT 59.374 41.667 6.57 0.00 0.00 2.24
4010 4090 5.120208 CGACGGTCTGTTCATTTCATTAGTT 59.880 40.000 6.57 0.00 0.00 2.24
4011 4091 6.241207 ACGGTCTGTTCATTTCATTAGTTG 57.759 37.500 0.00 0.00 0.00 3.16
4012 4092 5.088739 CGGTCTGTTCATTTCATTAGTTGC 58.911 41.667 0.00 0.00 0.00 4.17
4013 4093 5.106555 CGGTCTGTTCATTTCATTAGTTGCT 60.107 40.000 0.00 0.00 0.00 3.91
4014 4094 6.092122 CGGTCTGTTCATTTCATTAGTTGCTA 59.908 38.462 0.00 0.00 0.00 3.49
4015 4095 7.467623 GGTCTGTTCATTTCATTAGTTGCTAG 58.532 38.462 0.00 0.00 0.00 3.42
4016 4096 7.414540 GGTCTGTTCATTTCATTAGTTGCTAGG 60.415 40.741 0.00 0.00 0.00 3.02
4017 4097 7.334421 GTCTGTTCATTTCATTAGTTGCTAGGA 59.666 37.037 0.00 0.00 0.00 2.94
4018 4098 7.882791 TCTGTTCATTTCATTAGTTGCTAGGAA 59.117 33.333 0.00 0.00 0.00 3.36
4019 4099 8.402798 TGTTCATTTCATTAGTTGCTAGGAAA 57.597 30.769 0.00 0.00 31.17 3.13
4020 4100 9.023962 TGTTCATTTCATTAGTTGCTAGGAAAT 57.976 29.630 1.75 1.75 34.87 2.17
4023 4103 9.342308 TCATTTCATTAGTTGCTAGGAAATAGG 57.658 33.333 4.35 2.37 33.87 2.57
4024 4104 9.342308 CATTTCATTAGTTGCTAGGAAATAGGA 57.658 33.333 4.35 4.48 33.87 2.94
4025 4105 9.920946 ATTTCATTAGTTGCTAGGAAATAGGAA 57.079 29.630 12.92 12.92 39.29 3.36
4026 4106 9.920946 TTTCATTAGTTGCTAGGAAATAGGAAT 57.079 29.630 15.74 4.16 42.90 3.01
4027 4107 9.920946 TTCATTAGTTGCTAGGAAATAGGAATT 57.079 29.630 12.92 0.00 42.90 2.17
4028 4108 9.920946 TCATTAGTTGCTAGGAAATAGGAATTT 57.079 29.630 4.35 0.00 42.90 1.82
4042 4122 9.921637 GAAATAGGAATTTCCACATGTGTTAAA 57.078 29.630 23.79 21.50 43.49 1.52
4044 4124 9.874205 AATAGGAATTTCCACATGTGTTAAATG 57.126 29.630 25.29 12.24 39.61 2.32
4045 4125 6.700352 AGGAATTTCCACATGTGTTAAATGG 58.300 36.000 25.29 11.92 39.61 3.16
4046 4126 5.351189 GGAATTTCCACATGTGTTAAATGGC 59.649 40.000 25.29 21.10 36.28 4.40
4047 4127 5.743636 ATTTCCACATGTGTTAAATGGCT 57.256 34.783 24.54 10.38 0.00 4.75
4048 4128 4.517952 TTCCACATGTGTTAAATGGCTG 57.482 40.909 23.79 5.19 0.00 4.85
4049 4129 2.230992 TCCACATGTGTTAAATGGCTGC 59.769 45.455 23.79 0.00 0.00 5.25
4050 4130 2.029200 CCACATGTGTTAAATGGCTGCA 60.029 45.455 23.79 0.00 0.00 4.41
4051 4131 3.554544 CCACATGTGTTAAATGGCTGCAA 60.555 43.478 23.79 0.00 0.00 4.08
4052 4132 3.429543 CACATGTGTTAAATGGCTGCAAC 59.570 43.478 18.03 0.00 0.00 4.17
4053 4133 3.069300 ACATGTGTTAAATGGCTGCAACA 59.931 39.130 0.00 0.00 0.00 3.33
4054 4134 4.247258 CATGTGTTAAATGGCTGCAACAT 58.753 39.130 0.50 0.00 33.79 2.71
4055 4135 3.911868 TGTGTTAAATGGCTGCAACATC 58.088 40.909 0.50 0.00 33.79 3.06
4056 4136 3.320256 TGTGTTAAATGGCTGCAACATCA 59.680 39.130 0.50 2.24 33.79 3.07
4057 4137 4.021280 TGTGTTAAATGGCTGCAACATCAT 60.021 37.500 0.50 0.00 33.79 2.45
4058 4138 4.931002 GTGTTAAATGGCTGCAACATCATT 59.069 37.500 0.50 0.00 33.79 2.57
4059 4139 5.409214 GTGTTAAATGGCTGCAACATCATTT 59.591 36.000 14.91 14.91 41.11 2.32
4060 4140 5.408909 TGTTAAATGGCTGCAACATCATTTG 59.591 36.000 18.03 0.00 39.32 2.32
4061 4141 3.688694 AATGGCTGCAACATCATTTGT 57.311 38.095 0.50 0.00 41.53 2.83
4063 4143 3.472283 TGGCTGCAACATCATTTGTTT 57.528 38.095 0.50 0.00 46.51 2.83
4064 4144 3.132160 TGGCTGCAACATCATTTGTTTG 58.868 40.909 0.50 0.00 46.51 2.93
4065 4145 3.181468 TGGCTGCAACATCATTTGTTTGA 60.181 39.130 0.50 0.00 46.51 2.69
4066 4146 3.184986 GGCTGCAACATCATTTGTTTGAC 59.815 43.478 0.50 0.00 46.51 3.18
4067 4147 3.803231 GCTGCAACATCATTTGTTTGACA 59.197 39.130 0.00 0.00 46.51 3.58
4068 4148 4.449743 GCTGCAACATCATTTGTTTGACAT 59.550 37.500 0.00 0.00 46.51 3.06
4069 4149 5.389098 GCTGCAACATCATTTGTTTGACATC 60.389 40.000 0.00 0.00 46.51 3.06
4070 4150 4.680567 TGCAACATCATTTGTTTGACATCG 59.319 37.500 0.00 0.00 46.51 3.84
4071 4151 4.681025 GCAACATCATTTGTTTGACATCGT 59.319 37.500 0.00 0.00 46.51 3.73
4072 4152 5.855925 GCAACATCATTTGTTTGACATCGTA 59.144 36.000 0.00 0.00 46.51 3.43
4073 4153 6.362016 GCAACATCATTTGTTTGACATCGTAA 59.638 34.615 0.00 0.00 46.51 3.18
4074 4154 7.096271 GCAACATCATTTGTTTGACATCGTAAA 60.096 33.333 0.00 0.00 46.51 2.01
4075 4155 8.750416 CAACATCATTTGTTTGACATCGTAAAA 58.250 29.630 0.00 0.00 46.51 1.52
4076 4156 9.474920 AACATCATTTGTTTGACATCGTAAAAT 57.525 25.926 0.00 0.00 46.51 1.82
4102 4182 8.696043 AATCAATAATATATGGCTGTGTGTGT 57.304 30.769 0.00 0.00 0.00 3.72
4103 4183 7.728847 TCAATAATATATGGCTGTGTGTGTC 57.271 36.000 0.00 0.00 0.00 3.67
4104 4184 7.278875 TCAATAATATATGGCTGTGTGTGTCA 58.721 34.615 0.00 0.00 0.00 3.58
4105 4185 7.226523 TCAATAATATATGGCTGTGTGTGTCAC 59.773 37.037 0.00 0.00 46.31 3.67
4106 4186 4.760530 ATATATGGCTGTGTGTGTCACT 57.239 40.909 4.27 0.00 46.27 3.41
4107 4187 2.455674 TATGGCTGTGTGTGTCACTC 57.544 50.000 4.27 0.91 46.27 3.51
4108 4188 0.469494 ATGGCTGTGTGTGTCACTCA 59.531 50.000 4.27 3.93 46.27 3.41
4109 4189 0.251634 TGGCTGTGTGTGTCACTCAA 59.748 50.000 9.22 0.80 46.27 3.02
4110 4190 1.134128 TGGCTGTGTGTGTCACTCAAT 60.134 47.619 9.22 0.00 46.27 2.57
4111 4191 1.265095 GGCTGTGTGTGTCACTCAATG 59.735 52.381 9.22 6.71 46.27 2.82
4112 4192 1.334419 GCTGTGTGTGTCACTCAATGC 60.334 52.381 9.22 11.97 46.27 3.56
4113 4193 1.941975 CTGTGTGTGTCACTCAATGCA 59.058 47.619 9.22 0.00 46.27 3.96
4114 4194 1.941975 TGTGTGTGTCACTCAATGCAG 59.058 47.619 9.22 0.00 46.27 4.41
4115 4195 2.212652 GTGTGTGTCACTCAATGCAGA 58.787 47.619 9.22 0.00 43.13 4.26
4116 4196 2.222678 GTGTGTGTCACTCAATGCAGAG 59.777 50.000 9.22 1.57 43.13 3.35
4117 4197 1.802960 GTGTGTCACTCAATGCAGAGG 59.197 52.381 4.27 0.00 39.97 3.69
4118 4198 0.801251 GTGTCACTCAATGCAGAGGC 59.199 55.000 7.77 0.00 39.97 4.70
4119 4199 0.321919 TGTCACTCAATGCAGAGGCC 60.322 55.000 7.77 0.00 39.97 5.19
4120 4200 0.321919 GTCACTCAATGCAGAGGCCA 60.322 55.000 5.01 0.00 39.97 5.36
4121 4201 0.401356 TCACTCAATGCAGAGGCCAA 59.599 50.000 5.01 0.00 39.97 4.52
4122 4202 0.809385 CACTCAATGCAGAGGCCAAG 59.191 55.000 5.01 0.00 39.97 3.61
4123 4203 0.323178 ACTCAATGCAGAGGCCAAGG 60.323 55.000 5.01 0.00 39.97 3.61
4124 4204 1.000521 TCAATGCAGAGGCCAAGGG 60.001 57.895 5.01 0.00 40.13 3.95
4140 4220 2.193248 GGCCATCCCCTCTTTCCG 59.807 66.667 0.00 0.00 0.00 4.30
4141 4221 2.375345 GGCCATCCCCTCTTTCCGA 61.375 63.158 0.00 0.00 0.00 4.55
4142 4222 1.607612 GCCATCCCCTCTTTCCGAA 59.392 57.895 0.00 0.00 0.00 4.30
4143 4223 0.034477 GCCATCCCCTCTTTCCGAAA 60.034 55.000 0.00 0.00 0.00 3.46
4144 4224 1.410224 GCCATCCCCTCTTTCCGAAAT 60.410 52.381 0.00 0.00 0.00 2.17
4145 4225 2.158667 GCCATCCCCTCTTTCCGAAATA 60.159 50.000 0.00 0.00 0.00 1.40
4146 4226 3.687264 GCCATCCCCTCTTTCCGAAATAA 60.687 47.826 0.00 0.00 0.00 1.40
4147 4227 4.532834 CCATCCCCTCTTTCCGAAATAAA 58.467 43.478 0.00 0.00 0.00 1.40
4148 4228 4.953579 CCATCCCCTCTTTCCGAAATAAAA 59.046 41.667 0.00 0.00 0.00 1.52
4149 4229 5.420739 CCATCCCCTCTTTCCGAAATAAAAA 59.579 40.000 0.00 0.00 0.00 1.94
4166 4246 1.605753 AAAAGAACCTCCGTGAAGGC 58.394 50.000 0.00 0.00 40.34 4.35
4167 4247 0.472471 AAAGAACCTCCGTGAAGGCA 59.528 50.000 0.00 0.00 40.34 4.75
4168 4248 0.693049 AAGAACCTCCGTGAAGGCAT 59.307 50.000 0.00 0.00 40.34 4.40
4169 4249 0.036010 AGAACCTCCGTGAAGGCATG 60.036 55.000 0.00 0.00 40.34 4.06
4170 4250 0.321653 GAACCTCCGTGAAGGCATGT 60.322 55.000 0.00 0.00 40.34 3.21
4171 4251 0.981183 AACCTCCGTGAAGGCATGTA 59.019 50.000 0.00 0.00 40.34 2.29
4172 4252 1.204146 ACCTCCGTGAAGGCATGTAT 58.796 50.000 0.00 0.00 40.34 2.29
4173 4253 1.139058 ACCTCCGTGAAGGCATGTATC 59.861 52.381 0.00 0.00 40.34 2.24
4174 4254 1.414181 CCTCCGTGAAGGCATGTATCT 59.586 52.381 0.00 0.00 40.77 1.98
4175 4255 2.477825 CTCCGTGAAGGCATGTATCTG 58.522 52.381 0.00 0.00 40.77 2.90
4176 4256 0.940126 CCGTGAAGGCATGTATCTGC 59.060 55.000 0.00 0.00 41.53 4.26
4177 4257 1.473965 CCGTGAAGGCATGTATCTGCT 60.474 52.381 0.00 0.00 41.95 4.24
4178 4258 1.863454 CGTGAAGGCATGTATCTGCTC 59.137 52.381 0.00 0.00 41.95 4.26
4179 4259 2.482664 CGTGAAGGCATGTATCTGCTCT 60.483 50.000 0.00 0.00 41.95 4.09
4180 4260 3.243535 CGTGAAGGCATGTATCTGCTCTA 60.244 47.826 0.00 0.00 41.95 2.43
4181 4261 4.560311 CGTGAAGGCATGTATCTGCTCTAT 60.560 45.833 0.00 0.00 41.95 1.98
4182 4262 4.928615 GTGAAGGCATGTATCTGCTCTATC 59.071 45.833 0.00 0.00 41.95 2.08
4183 4263 4.020751 TGAAGGCATGTATCTGCTCTATCC 60.021 45.833 0.00 0.00 41.95 2.59
4184 4264 3.514539 AGGCATGTATCTGCTCTATCCA 58.485 45.455 0.00 0.00 41.95 3.41
4185 4265 4.102598 AGGCATGTATCTGCTCTATCCAT 58.897 43.478 0.00 0.00 41.95 3.41
4186 4266 4.161942 AGGCATGTATCTGCTCTATCCATC 59.838 45.833 0.00 0.00 41.95 3.51
4187 4267 4.081254 GGCATGTATCTGCTCTATCCATCA 60.081 45.833 0.00 0.00 41.95 3.07
4188 4268 5.110598 GCATGTATCTGCTCTATCCATCAG 58.889 45.833 0.00 0.00 39.12 2.90
4189 4269 4.797800 TGTATCTGCTCTATCCATCAGC 57.202 45.455 0.00 0.00 0.00 4.26
4190 4270 3.513119 TGTATCTGCTCTATCCATCAGCC 59.487 47.826 0.00 0.00 31.68 4.85
4191 4271 1.346062 TCTGCTCTATCCATCAGCCC 58.654 55.000 0.00 0.00 31.68 5.19
4192 4272 1.132913 TCTGCTCTATCCATCAGCCCT 60.133 52.381 0.00 0.00 31.68 5.19
4193 4273 1.698532 CTGCTCTATCCATCAGCCCTT 59.301 52.381 0.00 0.00 31.68 3.95
4194 4274 1.419012 TGCTCTATCCATCAGCCCTTG 59.581 52.381 0.00 0.00 31.68 3.61
4195 4275 1.696336 GCTCTATCCATCAGCCCTTGA 59.304 52.381 0.00 0.00 40.85 3.02
4196 4276 2.549778 GCTCTATCCATCAGCCCTTGAC 60.550 54.545 0.00 0.00 38.99 3.18
4197 4277 2.702478 CTCTATCCATCAGCCCTTGACA 59.298 50.000 0.00 0.00 38.99 3.58
4198 4278 3.114606 TCTATCCATCAGCCCTTGACAA 58.885 45.455 0.00 0.00 38.99 3.18
4199 4279 2.431954 ATCCATCAGCCCTTGACAAG 57.568 50.000 8.31 8.31 38.99 3.16
4200 4280 0.322816 TCCATCAGCCCTTGACAAGC 60.323 55.000 9.85 0.25 38.99 4.01
4201 4281 0.323178 CCATCAGCCCTTGACAAGCT 60.323 55.000 9.85 2.83 38.99 3.74
4202 4282 1.065199 CCATCAGCCCTTGACAAGCTA 60.065 52.381 9.85 0.00 38.99 3.32
4203 4283 2.422519 CCATCAGCCCTTGACAAGCTAT 60.423 50.000 9.85 0.00 38.99 2.97
4204 4284 3.181451 CCATCAGCCCTTGACAAGCTATA 60.181 47.826 9.85 0.00 38.99 1.31
4205 4285 4.454678 CATCAGCCCTTGACAAGCTATAA 58.545 43.478 9.85 0.00 38.99 0.98
4206 4286 4.142609 TCAGCCCTTGACAAGCTATAAG 57.857 45.455 9.85 0.00 34.38 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.614057 CACACGAGGAAGATAAATGGGC 59.386 50.000 0.00 0.00 0.00 5.36
21 22 4.759782 ACTCACACGAGGAAGATAAATGG 58.240 43.478 0.00 0.00 44.17 3.16
60 62 7.545265 TGCATGCAAAGTAAATAGATCAAAACC 59.455 33.333 20.30 0.00 0.00 3.27
66 68 9.090692 ACAAATTGCATGCAAAGTAAATAGATC 57.909 29.630 34.84 0.00 39.55 2.75
75 77 5.302360 AGATTCACAAATTGCATGCAAAGT 58.698 33.333 34.84 27.92 39.55 2.66
140 142 3.181475 TGCTTATCGAGGAGCTTGGTTAG 60.181 47.826 19.61 0.00 39.60 2.34
194 196 5.401531 TGTGACTACTAGAATTGGTGTCC 57.598 43.478 0.00 0.00 0.00 4.02
211 213 8.244113 TGATCACTCGATATGGTATTATGTGAC 58.756 37.037 0.00 0.00 35.26 3.67
214 216 9.591792 CAATGATCACTCGATATGGTATTATGT 57.408 33.333 0.00 0.00 29.66 2.29
228 230 5.295152 TGAAGATGGATCAATGATCACTCG 58.705 41.667 22.93 0.00 40.50 4.18
231 233 6.688637 TGTTGAAGATGGATCAATGATCAC 57.311 37.500 22.93 13.48 40.50 3.06
250 252 4.931002 CCAAATTTACCTTGCCTGATGTTG 59.069 41.667 0.00 0.00 0.00 3.33
253 255 5.603170 ATCCAAATTTACCTTGCCTGATG 57.397 39.130 0.00 0.00 0.00 3.07
288 290 7.998964 CCCTGTCTATTCCTTTTACATGGTATT 59.001 37.037 0.00 0.00 0.00 1.89
310 312 4.870123 TCAACAATTTCACCAATCCCTG 57.130 40.909 0.00 0.00 0.00 4.45
321 323 7.044052 GGCTTAAGCAATACGATCAACAATTTC 60.044 37.037 27.83 0.79 44.36 2.17
323 325 6.095440 AGGCTTAAGCAATACGATCAACAATT 59.905 34.615 27.83 0.00 44.36 2.32
327 329 5.163754 ACAAGGCTTAAGCAATACGATCAAC 60.164 40.000 27.83 6.79 44.36 3.18
333 335 2.097466 CCCACAAGGCTTAAGCAATACG 59.903 50.000 27.83 13.59 44.36 3.06
363 365 1.487452 AAGGTATATGTGCGTGCGCG 61.487 55.000 16.86 16.86 45.51 6.86
364 366 0.232303 GAAGGTATATGTGCGTGCGC 59.768 55.000 9.85 9.85 42.35 6.09
365 367 1.852942 AGAAGGTATATGTGCGTGCG 58.147 50.000 0.00 0.00 0.00 5.34
367 369 3.792401 TCCAAGAAGGTATATGTGCGTG 58.208 45.455 0.00 0.00 39.02 5.34
368 370 3.451178 ACTCCAAGAAGGTATATGTGCGT 59.549 43.478 0.00 0.00 39.02 5.24
369 371 4.060038 ACTCCAAGAAGGTATATGTGCG 57.940 45.455 0.00 0.00 39.02 5.34
370 372 5.914033 TGTACTCCAAGAAGGTATATGTGC 58.086 41.667 0.00 0.00 39.02 4.57
399 401 7.147655 ACGTCTTATATTATGGGATGGATGGAG 60.148 40.741 0.00 0.00 0.00 3.86
400 402 6.672218 ACGTCTTATATTATGGGATGGATGGA 59.328 38.462 0.00 0.00 0.00 3.41
401 403 6.889198 ACGTCTTATATTATGGGATGGATGG 58.111 40.000 0.00 0.00 0.00 3.51
430 472 8.422973 ACGTTTTTGACACTAATGTAGTAACA 57.577 30.769 0.00 0.00 39.95 2.41
431 473 9.706846 AAACGTTTTTGACACTAATGTAGTAAC 57.293 29.630 7.96 0.00 39.95 2.50
442 487 9.015577 CACATAATGTAAAACGTTTTTGACACT 57.984 29.630 29.42 20.40 38.66 3.55
443 488 9.011407 TCACATAATGTAAAACGTTTTTGACAC 57.989 29.630 29.42 21.20 38.66 3.67
445 490 8.196241 CGTCACATAATGTAAAACGTTTTTGAC 58.804 33.333 29.42 27.40 30.49 3.18
447 492 7.376336 TCCGTCACATAATGTAAAACGTTTTTG 59.624 33.333 29.42 21.72 32.03 2.44
449 494 6.957150 TCCGTCACATAATGTAAAACGTTTT 58.043 32.000 27.65 27.65 32.03 2.43
450 495 6.347888 CCTCCGTCACATAATGTAAAACGTTT 60.348 38.462 7.96 7.96 32.03 3.60
453 498 4.033587 CCCTCCGTCACATAATGTAAAACG 59.966 45.833 0.00 0.00 33.01 3.60
454 499 5.180271 TCCCTCCGTCACATAATGTAAAAC 58.820 41.667 0.00 0.00 0.00 2.43
457 502 4.028131 ACTCCCTCCGTCACATAATGTAA 58.972 43.478 0.00 0.00 0.00 2.41
458 503 3.638860 ACTCCCTCCGTCACATAATGTA 58.361 45.455 0.00 0.00 0.00 2.29
459 504 2.467880 ACTCCCTCCGTCACATAATGT 58.532 47.619 0.00 0.00 0.00 2.71
460 505 4.665833 TTACTCCCTCCGTCACATAATG 57.334 45.455 0.00 0.00 0.00 1.90
461 506 5.046159 TGTTTTACTCCCTCCGTCACATAAT 60.046 40.000 0.00 0.00 0.00 1.28
462 507 4.283978 TGTTTTACTCCCTCCGTCACATAA 59.716 41.667 0.00 0.00 0.00 1.90
463 508 3.833650 TGTTTTACTCCCTCCGTCACATA 59.166 43.478 0.00 0.00 0.00 2.29
464 509 2.635915 TGTTTTACTCCCTCCGTCACAT 59.364 45.455 0.00 0.00 0.00 3.21
465 510 2.040939 TGTTTTACTCCCTCCGTCACA 58.959 47.619 0.00 0.00 0.00 3.58
466 511 2.825861 TGTTTTACTCCCTCCGTCAC 57.174 50.000 0.00 0.00 0.00 3.67
467 512 4.468510 ACATATGTTTTACTCCCTCCGTCA 59.531 41.667 1.41 0.00 0.00 4.35
468 513 4.809426 CACATATGTTTTACTCCCTCCGTC 59.191 45.833 5.37 0.00 0.00 4.79
469 514 4.224370 ACACATATGTTTTACTCCCTCCGT 59.776 41.667 5.37 0.00 34.46 4.69
470 515 4.766375 ACACATATGTTTTACTCCCTCCG 58.234 43.478 5.37 0.00 34.46 4.63
764 817 3.492313 GGCATCAGAAAAATGTCGTGTC 58.508 45.455 0.00 0.00 0.00 3.67
806 859 0.677842 GACGTAGATGGGCCGGTAAT 59.322 55.000 1.90 0.00 0.00 1.89
808 861 2.188829 CGACGTAGATGGGCCGGTA 61.189 63.158 1.90 0.00 0.00 4.02
1018 1071 1.642037 TAAGTGAGAGTCGGACGCGG 61.642 60.000 12.47 0.00 0.00 6.46
1031 1084 2.111384 GCAGGAGGAGGATGTAAGTGA 58.889 52.381 0.00 0.00 0.00 3.41
1111 1169 2.567615 AGAATAGGCGTATGGGATCACC 59.432 50.000 0.00 0.00 40.81 4.02
1183 1241 9.593134 AGAATCACTCAGCTACATAACTAAAAG 57.407 33.333 0.00 0.00 0.00 2.27
1319 1378 9.700831 ACCTTCCAGCAATATAAAGATTTAACT 57.299 29.630 0.00 0.00 0.00 2.24
1352 1411 3.871006 TGCACATAGATCACGGTCATTTC 59.129 43.478 0.00 0.00 0.00 2.17
1376 1435 1.692411 GATGGGAATGTGGCCCTAAC 58.308 55.000 0.00 0.00 46.19 2.34
1431 1490 5.441718 AACAGATCTTCCTATCCTTTGCA 57.558 39.130 0.00 0.00 0.00 4.08
1471 1530 9.681062 TGCTTCTTACTGTAAAATATAAAGGCT 57.319 29.630 1.46 0.00 0.00 4.58
1487 1546 6.069963 AGGATAGGACAACAATGCTTCTTACT 60.070 38.462 0.00 0.00 0.00 2.24
1490 1549 5.184892 AGGATAGGACAACAATGCTTCTT 57.815 39.130 0.00 0.00 0.00 2.52
1499 1558 7.195374 AGTAAAGCATAAGGATAGGACAACA 57.805 36.000 0.00 0.00 0.00 3.33
1513 1572 3.696051 AGGACCGACGTTAGTAAAGCATA 59.304 43.478 0.00 0.00 0.00 3.14
1556 1615 8.230486 CACAGTAAGTTCTTTGTTCATATGTCC 58.770 37.037 1.90 0.00 0.00 4.02
1572 1631 9.066892 TCAAAGCTATTGATTTCACAGTAAGTT 57.933 29.630 7.09 0.00 28.28 2.66
1577 1636 7.516198 AACTCAAAGCTATTGATTTCACAGT 57.484 32.000 10.45 3.21 28.28 3.55
1630 1689 4.451629 AAAGAAGCAGCCATTCAATCTG 57.548 40.909 0.00 0.00 0.00 2.90
1632 1691 6.199937 TCTTAAAGAAGCAGCCATTCAATC 57.800 37.500 0.00 0.00 32.21 2.67
1642 1701 8.646900 ACCTCCTATTCTATCTTAAAGAAGCAG 58.353 37.037 0.00 0.00 36.46 4.24
1804 1870 0.179029 AACCGTCCACCAGGTGAAAG 60.179 55.000 22.37 2.23 41.21 2.62
2422 2488 8.947055 AACACAAGAAAAACTAATTTCTGCAT 57.053 26.923 3.30 0.00 46.25 3.96
2448 2514 1.148310 AGCCACAACAGATTTCGACG 58.852 50.000 0.00 0.00 0.00 5.12
2484 2550 8.729756 CAGTAATCAAACTGTGAAATCATACCA 58.270 33.333 0.00 0.00 41.63 3.25
2524 2590 5.165652 AGGAGATAAGGCCTGGAATAATCA 58.834 41.667 5.69 0.00 32.06 2.57
2713 2779 6.291849 CGATCTTTTGAAGACGTCCATGTATC 60.292 42.308 13.01 5.00 41.01 2.24
2804 2870 3.002862 CCACGAAATTCTTTCACCGACAA 59.997 43.478 0.00 0.00 39.63 3.18
3012 3080 3.276857 CAATCTAGCAAGCCATGACAGT 58.723 45.455 0.00 0.00 0.00 3.55
3103 3171 1.471684 CCTCTCTTTTGCTGCACATCC 59.528 52.381 0.00 0.00 0.00 3.51
3251 3319 6.473455 GGCAAAAATACAAATCCAAGAGATCG 59.527 38.462 0.00 0.00 32.47 3.69
3409 3480 5.289675 ACTGCATTAAGAAAGAATCTCGACG 59.710 40.000 0.00 0.00 37.42 5.12
3410 3481 6.654793 ACTGCATTAAGAAAGAATCTCGAC 57.345 37.500 0.00 0.00 37.42 4.20
3411 3482 7.672983 AAACTGCATTAAGAAAGAATCTCGA 57.327 32.000 0.00 0.00 37.42 4.04
3465 3537 9.798994 GCAGAATTCATTTTTGAATAGTCTGAT 57.201 29.630 22.51 2.23 41.26 2.90
3471 3543 8.248945 ACCTCTGCAGAATTCATTTTTGAATAG 58.751 33.333 18.85 0.00 37.52 1.73
3478 3550 7.550712 GGAATAACCTCTGCAGAATTCATTTT 58.449 34.615 27.78 14.10 35.41 1.82
3510 3582 4.727507 ATAGTTGAGCGTCAGTGAAGAT 57.272 40.909 10.48 2.87 0.00 2.40
3515 3587 2.987149 ACGAAATAGTTGAGCGTCAGTG 59.013 45.455 0.00 0.00 0.00 3.66
3525 3597 6.422701 TGGACAGACTTTGTACGAAATAGTTG 59.577 38.462 0.00 0.00 44.17 3.16
3537 3609 7.048512 GCTTATAATAGGTGGACAGACTTTGT 58.951 38.462 0.00 0.00 44.55 2.83
3551 3623 8.213518 ACTGTCAACATTGTGCTTATAATAGG 57.786 34.615 0.00 0.00 0.00 2.57
3634 3707 8.737175 CAAGTGTACAACTCTGGTACTAGATAA 58.263 37.037 9.62 0.00 41.27 1.75
3671 3745 9.097257 CATTGATGAACACATACACACTGTATA 57.903 33.333 0.00 0.00 41.28 1.47
3779 3853 8.483307 AAATATCCAAAACATCTTGTGAATGC 57.517 30.769 0.00 0.00 0.00 3.56
3812 3892 5.123820 TGCTCATTTGAGTTTGTATGTAGCC 59.876 40.000 9.21 0.00 43.85 3.93
3813 3893 6.182039 TGCTCATTTGAGTTTGTATGTAGC 57.818 37.500 9.21 0.00 43.85 3.58
3827 3907 9.848172 GTTTTAGTGTGTTTATTTGCTCATTTG 57.152 29.630 0.00 0.00 0.00 2.32
3869 3949 5.744490 ACGTTCTAACCTTTTTGTGAATCG 58.256 37.500 0.00 0.00 0.00 3.34
3891 3971 3.435671 CCCTCCGTTCACAAATACAAGAC 59.564 47.826 0.00 0.00 0.00 3.01
3896 3976 3.329929 ACTCCCTCCGTTCACAAATAC 57.670 47.619 0.00 0.00 0.00 1.89
3902 3982 5.315348 AGATATACTACTCCCTCCGTTCAC 58.685 45.833 0.00 0.00 0.00 3.18
3907 3987 2.937799 GCGAGATATACTACTCCCTCCG 59.062 54.545 0.00 0.00 0.00 4.63
3923 4003 2.028484 GTGTGTTCCCACGCGAGA 59.972 61.111 15.93 3.14 44.92 4.04
3971 4051 2.288579 ACCGTCGCAACTCACATCTTTA 60.289 45.455 0.00 0.00 0.00 1.85
3977 4057 1.299850 CAGACCGTCGCAACTCACA 60.300 57.895 0.00 0.00 0.00 3.58
3978 4058 0.874607 AACAGACCGTCGCAACTCAC 60.875 55.000 0.00 0.00 0.00 3.51
3979 4059 0.596600 GAACAGACCGTCGCAACTCA 60.597 55.000 0.00 0.00 0.00 3.41
3980 4060 0.596600 TGAACAGACCGTCGCAACTC 60.597 55.000 0.00 0.00 0.00 3.01
3981 4061 0.033504 ATGAACAGACCGTCGCAACT 59.966 50.000 0.00 0.00 0.00 3.16
3982 4062 0.865769 AATGAACAGACCGTCGCAAC 59.134 50.000 0.00 0.00 0.00 4.17
3983 4063 1.529438 GAAATGAACAGACCGTCGCAA 59.471 47.619 0.00 0.00 0.00 4.85
3984 4064 1.144969 GAAATGAACAGACCGTCGCA 58.855 50.000 0.00 0.00 0.00 5.10
3985 4065 1.144969 TGAAATGAACAGACCGTCGC 58.855 50.000 0.00 0.00 0.00 5.19
3986 4066 4.625742 ACTAATGAAATGAACAGACCGTCG 59.374 41.667 0.00 0.00 0.00 5.12
3987 4067 6.307155 CAACTAATGAAATGAACAGACCGTC 58.693 40.000 0.00 0.00 0.00 4.79
3988 4068 5.334879 GCAACTAATGAAATGAACAGACCGT 60.335 40.000 0.00 0.00 0.00 4.83
3989 4069 5.088739 GCAACTAATGAAATGAACAGACCG 58.911 41.667 0.00 0.00 0.00 4.79
3990 4070 6.259550 AGCAACTAATGAAATGAACAGACC 57.740 37.500 0.00 0.00 0.00 3.85
3991 4071 7.334421 TCCTAGCAACTAATGAAATGAACAGAC 59.666 37.037 0.00 0.00 0.00 3.51
3992 4072 7.394016 TCCTAGCAACTAATGAAATGAACAGA 58.606 34.615 0.00 0.00 0.00 3.41
3993 4073 7.615582 TCCTAGCAACTAATGAAATGAACAG 57.384 36.000 0.00 0.00 0.00 3.16
3994 4074 7.994425 TTCCTAGCAACTAATGAAATGAACA 57.006 32.000 0.00 0.00 0.00 3.18
3997 4077 9.342308 CCTATTTCCTAGCAACTAATGAAATGA 57.658 33.333 15.31 5.83 33.54 2.57
3998 4078 9.342308 TCCTATTTCCTAGCAACTAATGAAATG 57.658 33.333 15.31 9.37 33.54 2.32
3999 4079 9.920946 TTCCTATTTCCTAGCAACTAATGAAAT 57.079 29.630 12.58 12.58 34.67 2.17
4000 4080 9.920946 ATTCCTATTTCCTAGCAACTAATGAAA 57.079 29.630 0.00 0.00 0.00 2.69
4001 4081 9.920946 AATTCCTATTTCCTAGCAACTAATGAA 57.079 29.630 0.00 0.00 0.00 2.57
4002 4082 9.920946 AAATTCCTATTTCCTAGCAACTAATGA 57.079 29.630 0.00 0.00 27.57 2.57
4016 4096 9.921637 TTTAACACATGTGGAAATTCCTATTTC 57.078 29.630 28.64 0.00 45.81 2.17
4018 4098 9.874205 CATTTAACACATGTGGAAATTCCTATT 57.126 29.630 28.64 12.55 37.46 1.73
4019 4099 8.477256 CCATTTAACACATGTGGAAATTCCTAT 58.523 33.333 28.64 10.11 37.46 2.57
4020 4100 7.578571 GCCATTTAACACATGTGGAAATTCCTA 60.579 37.037 28.64 8.20 37.46 2.94
4021 4101 6.700352 CCATTTAACACATGTGGAAATTCCT 58.300 36.000 28.64 11.04 37.46 3.36
4022 4102 5.351189 GCCATTTAACACATGTGGAAATTCC 59.649 40.000 28.64 19.08 36.96 3.01
4023 4103 6.091169 CAGCCATTTAACACATGTGGAAATTC 59.909 38.462 28.64 21.91 31.90 2.17
4024 4104 5.933463 CAGCCATTTAACACATGTGGAAATT 59.067 36.000 28.64 16.30 31.90 1.82
4025 4105 5.481105 CAGCCATTTAACACATGTGGAAAT 58.519 37.500 28.64 26.13 33.41 2.17
4026 4106 4.798924 GCAGCCATTTAACACATGTGGAAA 60.799 41.667 28.64 25.25 34.19 3.13
4027 4107 3.305950 GCAGCCATTTAACACATGTGGAA 60.306 43.478 28.64 19.03 34.19 3.53
4028 4108 2.230992 GCAGCCATTTAACACATGTGGA 59.769 45.455 28.64 14.19 34.19 4.02
4029 4109 2.029200 TGCAGCCATTTAACACATGTGG 60.029 45.455 28.64 11.12 34.19 4.17
4030 4110 3.300852 TGCAGCCATTTAACACATGTG 57.699 42.857 24.25 24.25 0.00 3.21
4031 4111 3.069300 TGTTGCAGCCATTTAACACATGT 59.931 39.130 0.00 0.00 0.00 3.21
4032 4112 3.651206 TGTTGCAGCCATTTAACACATG 58.349 40.909 0.00 0.00 0.00 3.21
4033 4113 4.021280 TGATGTTGCAGCCATTTAACACAT 60.021 37.500 0.00 0.00 36.05 3.21
4034 4114 3.320256 TGATGTTGCAGCCATTTAACACA 59.680 39.130 0.00 0.00 36.05 3.72
4035 4115 3.911868 TGATGTTGCAGCCATTTAACAC 58.088 40.909 0.00 0.00 36.05 3.32
4036 4116 4.804868 ATGATGTTGCAGCCATTTAACA 57.195 36.364 0.00 0.00 37.43 2.41
4037 4117 5.409214 ACAAATGATGTTGCAGCCATTTAAC 59.591 36.000 14.22 0.00 40.06 2.01
4038 4118 5.549347 ACAAATGATGTTGCAGCCATTTAA 58.451 33.333 14.22 1.62 40.06 1.52
4039 4119 5.149973 ACAAATGATGTTGCAGCCATTTA 57.850 34.783 14.22 4.12 40.06 1.40
4040 4120 4.010667 ACAAATGATGTTGCAGCCATTT 57.989 36.364 10.50 10.50 40.06 2.32
4041 4121 3.688694 ACAAATGATGTTGCAGCCATT 57.311 38.095 0.00 0.00 40.06 3.16
4076 4156 9.791801 ACACACACAGCCATATATTATTGATTA 57.208 29.630 0.00 0.00 0.00 1.75
4077 4157 8.696043 ACACACACAGCCATATATTATTGATT 57.304 30.769 0.00 0.00 0.00 2.57
4078 4158 7.938490 TGACACACACAGCCATATATTATTGAT 59.062 33.333 0.00 0.00 0.00 2.57
4079 4159 7.278875 TGACACACACAGCCATATATTATTGA 58.721 34.615 0.00 0.00 0.00 2.57
4080 4160 7.495135 TGACACACACAGCCATATATTATTG 57.505 36.000 0.00 0.00 0.00 1.90
4096 4176 2.486918 CTCTGCATTGAGTGACACACA 58.513 47.619 8.59 4.81 36.74 3.72
4097 4177 1.802960 CCTCTGCATTGAGTGACACAC 59.197 52.381 8.59 1.67 32.50 3.82
4098 4178 1.879372 GCCTCTGCATTGAGTGACACA 60.879 52.381 8.59 0.00 37.47 3.72
4099 4179 0.801251 GCCTCTGCATTGAGTGACAC 59.199 55.000 0.00 0.00 37.47 3.67
4100 4180 0.321919 GGCCTCTGCATTGAGTGACA 60.322 55.000 0.00 0.00 40.13 3.58
4101 4181 0.321919 TGGCCTCTGCATTGAGTGAC 60.322 55.000 3.32 0.00 40.13 3.67
4102 4182 0.401356 TTGGCCTCTGCATTGAGTGA 59.599 50.000 3.32 0.00 40.13 3.41
4103 4183 0.809385 CTTGGCCTCTGCATTGAGTG 59.191 55.000 3.32 0.00 40.13 3.51
4104 4184 0.323178 CCTTGGCCTCTGCATTGAGT 60.323 55.000 3.32 0.00 40.13 3.41
4105 4185 1.035932 CCCTTGGCCTCTGCATTGAG 61.036 60.000 3.32 0.00 40.13 3.02
4106 4186 1.000521 CCCTTGGCCTCTGCATTGA 60.001 57.895 3.32 0.00 40.13 2.57
4107 4187 2.718073 GCCCTTGGCCTCTGCATTG 61.718 63.158 3.32 0.00 44.06 2.82
4108 4188 2.363406 GCCCTTGGCCTCTGCATT 60.363 61.111 3.32 0.00 44.06 3.56
4123 4203 1.921869 TTCGGAAAGAGGGGATGGCC 61.922 60.000 0.00 0.00 0.00 5.36
4124 4204 0.034477 TTTCGGAAAGAGGGGATGGC 60.034 55.000 0.00 0.00 0.00 4.40
4125 4205 2.736670 ATTTCGGAAAGAGGGGATGG 57.263 50.000 9.30 0.00 0.00 3.51
4126 4206 6.524101 TTTTTATTTCGGAAAGAGGGGATG 57.476 37.500 9.30 0.00 0.00 3.51
4146 4226 1.954382 GCCTTCACGGAGGTTCTTTTT 59.046 47.619 0.00 0.00 39.11 1.94
4147 4227 1.133915 TGCCTTCACGGAGGTTCTTTT 60.134 47.619 0.00 0.00 39.11 2.27
4148 4228 0.472471 TGCCTTCACGGAGGTTCTTT 59.528 50.000 0.00 0.00 39.11 2.52
4149 4229 0.693049 ATGCCTTCACGGAGGTTCTT 59.307 50.000 0.00 0.00 39.11 2.52
4150 4230 0.036010 CATGCCTTCACGGAGGTTCT 60.036 55.000 0.00 0.00 39.11 3.01
4151 4231 0.321653 ACATGCCTTCACGGAGGTTC 60.322 55.000 0.00 0.00 39.11 3.62
4152 4232 0.981183 TACATGCCTTCACGGAGGTT 59.019 50.000 0.00 0.00 39.11 3.50
4153 4233 1.139058 GATACATGCCTTCACGGAGGT 59.861 52.381 0.00 0.00 39.11 3.85
4154 4234 1.414181 AGATACATGCCTTCACGGAGG 59.586 52.381 0.00 0.00 39.93 4.30
4155 4235 2.477825 CAGATACATGCCTTCACGGAG 58.522 52.381 0.00 0.00 33.16 4.63
4156 4236 1.473257 GCAGATACATGCCTTCACGGA 60.473 52.381 0.00 0.00 40.43 4.69
4157 4237 0.940126 GCAGATACATGCCTTCACGG 59.060 55.000 0.00 0.00 40.43 4.94
4165 4245 5.082251 TGATGGATAGAGCAGATACATGC 57.918 43.478 0.00 0.00 46.88 4.06
4166 4246 5.110598 GCTGATGGATAGAGCAGATACATG 58.889 45.833 0.00 0.00 27.37 3.21
4167 4247 4.161942 GGCTGATGGATAGAGCAGATACAT 59.838 45.833 0.00 0.00 34.20 2.29
4168 4248 3.513119 GGCTGATGGATAGAGCAGATACA 59.487 47.826 0.00 0.00 34.20 2.29
4169 4249 3.118811 GGGCTGATGGATAGAGCAGATAC 60.119 52.174 0.00 0.00 34.20 2.24
4170 4250 3.102972 GGGCTGATGGATAGAGCAGATA 58.897 50.000 0.00 0.00 34.20 1.98
4171 4251 1.907936 GGGCTGATGGATAGAGCAGAT 59.092 52.381 0.00 0.00 34.20 2.90
4172 4252 1.132913 AGGGCTGATGGATAGAGCAGA 60.133 52.381 0.00 0.00 34.20 4.26
4173 4253 1.350071 AGGGCTGATGGATAGAGCAG 58.650 55.000 0.00 0.00 34.20 4.24
4174 4254 1.419012 CAAGGGCTGATGGATAGAGCA 59.581 52.381 0.00 0.00 34.20 4.26
4175 4255 1.696336 TCAAGGGCTGATGGATAGAGC 59.304 52.381 0.00 0.00 0.00 4.09
4176 4256 2.702478 TGTCAAGGGCTGATGGATAGAG 59.298 50.000 0.00 0.00 36.14 2.43
4177 4257 2.763039 TGTCAAGGGCTGATGGATAGA 58.237 47.619 0.00 0.00 36.14 1.98
4178 4258 3.474600 CTTGTCAAGGGCTGATGGATAG 58.525 50.000 4.52 0.00 36.14 2.08
4179 4259 2.421952 GCTTGTCAAGGGCTGATGGATA 60.422 50.000 14.40 0.00 36.14 2.59
4180 4260 1.684248 GCTTGTCAAGGGCTGATGGAT 60.684 52.381 14.40 0.00 36.14 3.41
4181 4261 0.322816 GCTTGTCAAGGGCTGATGGA 60.323 55.000 14.40 0.00 36.14 3.41
4182 4262 0.323178 AGCTTGTCAAGGGCTGATGG 60.323 55.000 14.40 0.00 36.14 3.51
4183 4263 2.408271 TAGCTTGTCAAGGGCTGATG 57.592 50.000 14.40 0.00 36.14 3.07
4184 4264 4.712476 CTTATAGCTTGTCAAGGGCTGAT 58.288 43.478 14.40 4.94 36.14 2.90
4185 4265 4.142609 CTTATAGCTTGTCAAGGGCTGA 57.857 45.455 14.40 0.00 37.50 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.