AutoCloner

Multiple sequence alignment - TraesCS6B01G235700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G235700	chr6B	100.000	4830	0	0	1	4830	403191837	403187008	0.000000e+00	8920.0
1	TraesCS6B01G235700	chr6B	92.453	106	8	0	2582	2687	538057626	538057731	8.370000e-33	152.0
2	TraesCS6B01G235700	chr6B	95.652	46	0	2	675	719	45804032	45803988	6.710000e-09	73.1
3	TraesCS6B01G235700	chr6B	97.059	34	0	1	2222	2254	149467112	149467079	6.750000e-04	56.5
4	TraesCS6B01G235700	chr6D	97.521	3913	75	12	84	3977	245268897	245272806	0.000000e+00	6669.0
5	TraesCS6B01G235700	chr6D	90.487	904	41	16	3962	4830	245272867	245273760	0.000000e+00	1151.0
6	TraesCS6B01G235700	chr6D	86.520	319	35	6	234	546	271609576	271609892	1.290000e-90	344.0
7	TraesCS6B01G235700	chr6D	95.050	101	4	1	1	100	245268089	245268189	1.800000e-34	158.0
8	TraesCS6B01G235700	chr6D	73.860	329	67	13	4451	4766	311249721	311249399	3.950000e-21	113.0
9	TraesCS6B01G235700	chr6D	89.855	69	6	1	2273	2340	344172532	344172600	2.390000e-13	87.9
10	TraesCS6B01G235700	chr6D	100.000	33	0	0	2582	2614	356723178	356723210	1.450000e-05	62.1
11	TraesCS6B01G235700	chr6A	93.072	1530	57	19	2477	3980	362715192	362713686	0.000000e+00	2193.0
12	TraesCS6B01G235700	chr6A	91.771	717	45	6	988	1691	362730769	362730054	0.000000e+00	985.0
13	TraesCS6B01G235700	chr6A	90.123	729	49	8	4123	4830	362713409	362712683	0.000000e+00	926.0
14	TraesCS6B01G235700	chr6A	89.796	539	50	3	1692	2226	362729929	362729392	0.000000e+00	686.0
15	TraesCS6B01G235700	chr6A	92.364	275	19	1	719	993	362731200	362730928	1.630000e-104	390.0
16	TraesCS6B01G235700	chr6A	86.792	318	34	5	234	546	88856504	88856190	9.950000e-92	348.0
17	TraesCS6B01G235700	chr6A	90.230	174	7	2	3962	4125	362713622	362713449	8.140000e-53	219.0
18	TraesCS6B01G235700	chr6A	94.286	140	7	1	547	685	362731435	362731296	3.790000e-51	213.0
19	TraesCS6B01G235700	chr6A	89.844	128	11	1	109	236	362731553	362731428	3.870000e-36	163.0
20	TraesCS6B01G235700	chr6A	91.453	117	6	2	2336	2448	362729396	362729280	1.800000e-34	158.0
21	TraesCS6B01G235700	chr6A	95.714	70	3	0	234	303	153353122	153353191	3.950000e-21	113.0
22	TraesCS6B01G235700	chr1B	83.354	799	126	6	3045	3838	674808987	674808191	0.000000e+00	732.0
23	TraesCS6B01G235700	chr1B	88.333	60	5	1	656	715	194375664	194375607	2.410000e-08	71.3
24	TraesCS6B01G235700	chr2D	89.164	323	24	5	233	546	218034301	218034621	4.530000e-105	392.0
25	TraesCS6B01G235700	chr2D	88.968	281	25	1	233	507	386492451	386492171	4.630000e-90	342.0
26	TraesCS6B01G235700	chr2D	85.938	64	9	0	4365	4428	571886572	571886509	8.670000e-08	69.4
27	TraesCS6B01G235700	chr2D	85.294	68	5	3	655	719	406969929	406969864	1.120000e-06	65.8
28	TraesCS6B01G235700	chr2D	97.059	34	0	1	2222	2254	580239955	580239988	6.750000e-04	56.5
29	TraesCS6B01G235700	chr7A	88.450	329	27	4	230	549	503428502	503428828	2.110000e-103	387.0
30	TraesCS6B01G235700	chr7A	89.855	69	6	1	2272	2339	375877966	375878034	2.390000e-13	87.9
31	TraesCS6B01G235700	chr7A	92.157	51	4	0	671	721	94491413	94491363	6.710000e-09	73.1
32	TraesCS6B01G235700	chr7A	97.059	34	0	1	2222	2254	429738577	429738610	6.750000e-04	56.5
33	TraesCS6B01G235700	chr7A	94.286	35	0	2	2222	2255	269297199	269297166	9.000000e-03	52.8
34	TraesCS6B01G235700	chr2A	87.736	318	31	4	233	544	522502305	522501990	9.880000e-97	364.0
35	TraesCS6B01G235700	chr2A	89.286	56	4	2	667	720	4835192	4835137	8.670000e-08	69.4
36	TraesCS6B01G235700	chr2A	85.938	64	9	0	4365	4428	710375003	710374940	8.670000e-08	69.4
37	TraesCS6B01G235700	chr4B	86.111	324	31	8	232	547	103805571	103805254	2.150000e-88	337.0
38	TraesCS6B01G235700	chr4B	88.298	282	22	4	234	507	347377075	347377353	1.300000e-85	327.0
39	TraesCS6B01G235700	chr7D	84.036	332	41	7	230	551	199026809	199026480	4.690000e-80	309.0
40	TraesCS6B01G235700	chr7D	86.957	69	9	0	4360	4428	46412110	46412178	1.440000e-10	78.7
41	TraesCS6B01G235700	chr7D	85.507	69	10	0	4360	4428	638272878	638272810	6.710000e-09	73.1
42	TraesCS6B01G235700	chr5D	91.429	70	5	1	2272	2340	272145958	272146027	1.430000e-15	95.3
43	TraesCS6B01G235700	chr5D	90.625	64	6	0	4129	4192	425035860	425035923	8.610000e-13	86.1
44	TraesCS6B01G235700	chr5D	85.507	69	10	0	4360	4428	379407506	379407438	6.710000e-09	73.1
45	TraesCS6B01G235700	chr5D	88.136	59	6	1	658	715	483556648	483556590	8.670000e-08	69.4
46	TraesCS6B01G235700	chr7B	91.304	69	5	1	2272	2339	296324259	296324327	5.150000e-15	93.5
47	TraesCS6B01G235700	chr7B	89.091	55	3	3	4138	4192	489773114	489773063	1.120000e-06	65.8
48	TraesCS6B01G235700	chr1D	91.304	69	5	1	2272	2339	50710645	50710577	5.150000e-15	93.5
49	TraesCS6B01G235700	chr1D	85.507	69	10	0	4360	4428	347050955	347051023	6.710000e-09	73.1
50	TraesCS6B01G235700	chr5B	89.855	69	6	1	2273	2340	22817742	22817674	2.390000e-13	87.9
51	TraesCS6B01G235700	chr2B	89.855	69	6	1	2272	2339	59218004	59217936	2.390000e-13	87.9
52	TraesCS6B01G235700	chr2B	96.970	33	1	0	2223	2255	715343131	715343099	6.750000e-04	56.5
53	TraesCS6B01G235700	chr1A	89.855	69	6	1	2272	2339	49892469	49892401	2.390000e-13	87.9
54	TraesCS6B01G235700	chr1A	100.000	30	0	0	2220	2249	363005919	363005948	6.750000e-04	56.5
55	TraesCS6B01G235700	chr5A	95.833	48	1	1	672	719	580803828	580803874	5.180000e-10	76.8
56	TraesCS6B01G235700	chr5A	81.481	81	10	4	643	719	519845626	519845705	1.450000e-05	62.1
57	TraesCS6B01G235700	chr4D	85.507	69	10	0	4360	4428	67337961	67337893	6.710000e-09	73.1
58	TraesCS6B01G235700	chrUn	96.970	33	1	0	2221	2253	301350795	301350827	6.750000e-04	56.5
59	TraesCS6B01G235700	chrUn	100.000	30	0	0	2224	2253	348117437	348117408	6.750000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G235700	chr6B	403187008	403191837	4829	True	8920.000000	8920	100.000000	1	4830	1	chr6B.!!$R3	4829
1	TraesCS6B01G235700	chr6D	245268089	245273760	5671	False	2659.333333	6669	94.352667	1	4830	3	chr6D.!!$F4	4829
2	TraesCS6B01G235700	chr6A	362712683	362715192	2509	True	1112.666667	2193	91.141667	2477	4830	3	chr6A.!!$R2	2353
3	TraesCS6B01G235700	chr6A	362729280	362731553	2273	True	432.500000	985	91.585667	109	2448	6	chr6A.!!$R3	2339
4	TraesCS6B01G235700	chr1B	674808191	674808987	796	True	732.000000	732	83.354000	3045	3838	1	chr1B.!!$R2	793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
34	36	2.299013	TCGTAAAAGGCAAGAGCTCTGA	59.701	45.455	19.06	2.76	41.70	3.27	F
183	909	2.583472	GCCAAAACAGCAGGCCTAT	58.417	52.632	3.98	0.00	42.58	2.57	F
953	1742	2.614057	GCCATACATGTGTCAAGCTACC	59.386	50.000	9.11	0.00	0.00	3.18	F
2000	3094	1.673168	GGTGAGATGGCATGGACTTC	58.327	55.000	3.81	0.00	0.00	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1105	2061	2.151202	GCATCCAAGTTTGACGGAGAA	58.849	47.619	0.00	0.00	30.84	2.87	R
1790	2884	4.116961	GCGGAAATGTAAATAAAAGCCCC	58.883	43.478	0.00	0.00	0.00	5.80	R
2600	3708	0.704076	AGAGGCTCTGAGAGTGTCCT	59.296	55.000	17.96	9.02	31.39	3.85	R
3902	5017	1.354337	CCTGTGCACCGACAGATTCG	61.354	60.000	15.69	0.00	45.39	3.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	36	2.299013	TCGTAAAAGGCAAGAGCTCTGA	59.701	45.455	19.06	2.76	41.70	3.27
183	909	2.583472	GCCAAAACAGCAGGCCTAT	58.417	52.632	3.98	0.00	42.58	2.57
278	1004	6.040391	CCAACTCATCCAAAAGTCCAAACTTA	59.960	38.462	0.00	0.00	45.07	2.24
361	1087	5.066634	ACACGTGAATAGACTCAGAGGTATG	59.933	44.000	25.01	0.00	0.00	2.39
431	1157	6.662865	TTTGATAAATTGTGAAAGCCAGGA	57.337	33.333	0.00	0.00	0.00	3.86
602	1328	6.038985	TGTCTCTTCGATCTCTAATGCAAAG	58.961	40.000	0.00	0.00	0.00	2.77
691	1418	7.451731	AAAATCTAATGACATACTCCCTCCA	57.548	36.000	0.00	0.00	0.00	3.86
715	1442	7.393234	CCATCCCAAAATAAGTGTCTCAACTTA	59.607	37.037	0.00	0.00	44.52	2.24
756	1545	4.876679	TGTTTGTTCTGACGACACCAAATA	59.123	37.500	0.00	0.00	0.00	1.40
852	1641	4.021229	TGAGAAATAAGCTACCGTGGAGA	58.979	43.478	0.00	0.00	0.00	3.71
853	1642	4.464951	TGAGAAATAAGCTACCGTGGAGAA	59.535	41.667	0.00	0.00	0.00	2.87
953	1742	2.614057	GCCATACATGTGTCAAGCTACC	59.386	50.000	9.11	0.00	0.00	3.18
1105	2061	4.566987	CGGAGGAGTTTTACTAAGCACTT	58.433	43.478	0.00	0.00	0.00	3.16
1222	2178	6.213195	TGAAACCTTTATCCCCTTTCGTACTA	59.787	38.462	0.00	0.00	0.00	1.82
1411	2370	7.942341	TCCACTGAACCTTTAGTCAAATTGTAT	59.058	33.333	0.00	0.00	0.00	2.29
1531	2490	3.063861	TGATCAAATCGTCATCTTTGCCG	59.936	43.478	0.00	0.00	33.40	5.69
1596	2555	8.274322	TCCATTTGGAGATGATAAGTTACACAT	58.726	33.333	0.00	4.68	39.78	3.21
1597	2556	8.347771	CCATTTGGAGATGATAAGTTACACATG	58.652	37.037	8.51	0.00	37.39	3.21
1598	2557	7.864108	TTTGGAGATGATAAGTTACACATGG	57.136	36.000	0.00	0.00	0.00	3.66
1790	2884	9.394477	GCAAACAAAGTTCTACCTTATAGTTTG	57.606	33.333	0.00	0.00	40.34	2.93
1793	2887	7.173032	ACAAAGTTCTACCTTATAGTTTGGGG	58.827	38.462	0.00	0.00	35.99	4.96
1794	2888	5.369409	AGTTCTACCTTATAGTTTGGGGC	57.631	43.478	0.00	0.00	0.00	5.80
1802	2896	9.197306	CTACCTTATAGTTTGGGGCTTTTATTT	57.803	33.333	0.00	0.00	0.00	1.40
1821	2915	7.633193	TTATTTACATTTCCGCATGGTAACT	57.367	32.000	0.00	0.00	36.30	2.24
2000	3094	1.673168	GGTGAGATGGCATGGACTTC	58.327	55.000	3.81	0.00	0.00	3.01
2038	3132	8.598075	CATATGGCTTTTAAATTTGTCAAGAGC	58.402	33.333	0.00	3.76	0.00	4.09
2080	3174	4.036498	AGTGTACGGAAATCTACAGATCCG	59.964	45.833	16.16	16.16	43.45	4.18
2116	3210	1.909302	GTCCCCAGGTCAGATTTCAGA	59.091	52.381	0.00	0.00	0.00	3.27
2235	3329	2.604912	TCAGAAGTACTCCCTCTGCA	57.395	50.000	15.43	5.18	0.00	4.41
2792	3900	8.473358	TTGTCATAGATTCGACTTCCCTATTA	57.527	34.615	0.00	0.00	33.18	0.98
2818	3926	1.372087	GAGCACCGGGATCTGCAAAG	61.372	60.000	16.21	0.00	35.73	2.77
3265	4380	2.262423	ACTCAAACAGTTCTGGCTCC	57.738	50.000	4.82	0.00	26.56	4.70
3851	4966	5.903810	AGGATCTACTGGTAATGTTCGTTC	58.096	41.667	0.00	0.00	0.00	3.95
3936	5061	1.338136	ACAGGCCGAACATCCTAGGG	61.338	60.000	9.46	0.00	0.00	3.53
3955	5080	3.954258	AGGGTATTTGCAGAATGTTAGGC	59.046	43.478	4.89	0.00	39.31	3.93
3977	5102	5.923114	GGCTGATTGGTTTCTTTCTTTCTTC	59.077	40.000	0.00	0.00	0.00	2.87
3978	5103	6.239148	GGCTGATTGGTTTCTTTCTTTCTTCT	60.239	38.462	0.00	0.00	0.00	2.85
4224	5489	2.484264	GACTAGGATGCACACAACCAAC	59.516	50.000	0.00	0.00	41.12	3.77
4225	5490	1.812571	CTAGGATGCACACAACCAACC	59.187	52.381	0.00	0.00	41.12	3.77
4227	5492	0.827507	GGATGCACACAACCAACCCT	60.828	55.000	0.00	0.00	38.58	4.34
4302	5567	9.547279	AAAGTTATGGATAGGTGAGGAAAAATT	57.453	29.630	0.00	0.00	0.00	1.82
4464	5737	1.119684	TCGATGTCACCCGATCCAAT	58.880	50.000	0.00	0.00	0.00	3.16
4475	5748	1.202855	CCGATCCAATCATCCAAGGCT	60.203	52.381	0.00	0.00	0.00	4.58
4491	5764	3.169512	AGGCTAGAATCTAGGCTCTCC	57.830	52.381	32.49	18.29	45.72	3.71
4531	5821	9.299963	CAATGTTTTCAACAAGACAATGACTTA	57.700	29.630	0.00	0.00	45.86	2.24
4569	5859	1.142262	GGTATAACCAACTCGGGCCAT	59.858	52.381	4.39	0.00	38.42	4.40
4570	5860	2.422377	GGTATAACCAACTCGGGCCATT	60.422	50.000	4.39	0.00	38.42	3.16
4576	5866	1.209504	CCAACTCGGGCCATTCTTAGA	59.790	52.381	4.39	0.00	0.00	2.10
4608	5898	2.100197	TCGAGACCCGATGATTGAGTT	58.900	47.619	0.00	0.00	43.23	3.01
4629	5919	1.402456	GCACTATCGTGGACGTCACTT	60.402	52.381	18.91	6.76	43.94	3.16
4637	5927	2.154963	CGTGGACGTCACTTATGTGTTG	59.845	50.000	18.91	5.36	43.94	3.33
4639	5929	3.059868	GTGGACGTCACTTATGTGTTGTG	60.060	47.826	18.91	0.00	44.14	3.33
4759	6049	3.698289	TCTCTCCACCGAAGTCAACTAT	58.302	45.455	0.00	0.00	0.00	2.12
4778	6068	7.346698	TCAACTATCAGATCTGGAGGAAGAAAT	59.653	37.037	22.42	7.81	0.00	2.17
4803	6093	3.607370	GAAGACCTGTCGGTGGCCC	62.607	68.421	0.00	0.00	45.73	5.80
4813	6103	2.675242	CGGTGGCCCCTACAATCCA	61.675	63.158	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	19	2.645838	TGTCAGAGCTCTTGCCTTTT	57.354	45.000	15.27	0.00	40.80	2.27
34	36	8.956426	CGTATTATTTCCCCTTATATTGCATGT	58.044	33.333	0.00	0.00	0.00	3.21
183	909	5.610398	TCCTACGGTTACGAGTATATGACA	58.390	41.667	0.00	0.00	44.60	3.58
278	1004	1.133356	GGATTGCCTAGCCCTTTCCAT	60.133	52.381	0.00	0.00	0.00	3.41
484	1210	2.997303	GTTTGGACTTTTGGTTGCGTTT	59.003	40.909	0.00	0.00	0.00	3.60
554	1280	2.490115	ACAAGACCTCATCACTCGAGAC	59.510	50.000	21.68	0.00	31.84	3.36
602	1328	2.463876	GTTGGAAACTGCAGTCAAAGC	58.536	47.619	21.95	7.75	45.32	3.51
691	1418	8.164070	ACTAAGTTGAGACACTTATTTTGGGAT	58.836	33.333	0.00	0.00	38.34	3.85
756	1545	8.618677	CAATGAATAAGCAGATACAACACTGAT	58.381	33.333	0.00	0.00	36.38	2.90
852	1641	4.906747	AAAACATGTGGCATATGGGTTT	57.093	36.364	25.13	20.47	0.00	3.27
853	1642	5.022787	ACTAAAACATGTGGCATATGGGTT	58.977	37.500	25.13	19.69	0.00	4.11
953	1742	8.479280	GTTTATTCAGCCAAATGTATAAATGCG	58.521	33.333	0.00	0.00	35.91	4.73
1105	2061	2.151202	GCATCCAAGTTTGACGGAGAA	58.849	47.619	0.00	0.00	30.84	2.87
1177	2133	7.598869	GGTTTCAACTGAAAATGGGAGAATTAC	59.401	37.037	6.46	0.00	44.58	1.89
1182	2138	4.803452	AGGTTTCAACTGAAAATGGGAGA	58.197	39.130	6.46	0.00	44.58	3.71
1531	2490	4.579340	AGACCAAGATCATGATCAATGCAC	59.421	41.667	31.99	23.21	40.22	4.57
1790	2884	4.116961	GCGGAAATGTAAATAAAAGCCCC	58.883	43.478	0.00	0.00	0.00	5.80
1793	2887	5.810074	ACCATGCGGAAATGTAAATAAAAGC	59.190	36.000	0.00	0.00	35.59	3.51
1794	2888	8.803799	GTTACCATGCGGAAATGTAAATAAAAG	58.196	33.333	0.00	0.00	35.59	2.27
1802	2896	9.426837	GTTATATAGTTACCATGCGGAAATGTA	57.573	33.333	0.00	0.00	35.59	2.29
2038	3132	4.463186	ACACTGTAGAACCTAAGGTGCTAG	59.537	45.833	0.00	0.00	43.87	3.42
2080	3174	4.803452	TGGGGACAATTCCTATCATTTCC	58.197	43.478	0.00	0.00	42.38	3.13
2116	3210	9.762933	AACACAATGATTTTGTTAAGTAGCAAT	57.237	25.926	7.84	0.00	31.65	3.56
2311	3407	9.710818	ACTCCCTCTGTAAACTAATATAAGACA	57.289	33.333	0.00	0.00	0.00	3.41
2341	3437	5.035443	CAGCAGAATGATTTTGCTCTAAGC	58.965	41.667	18.86	0.00	45.75	3.09
2600	3708	0.704076	AGAGGCTCTGAGAGTGTCCT	59.296	55.000	17.96	9.02	31.39	3.85
2776	3884	5.128827	TCAACAGCTAATAGGGAAGTCGAAT	59.871	40.000	0.00	0.00	0.00	3.34
2780	3888	4.123506	GCTCAACAGCTAATAGGGAAGTC	58.876	47.826	0.00	0.00	43.09	3.01
2818	3926	7.934457	ACAATAATGCAATCATCCTGACTAAC	58.066	34.615	0.00	0.00	31.27	2.34
3265	4380	1.502231	CTGACTCTGAAACACGTGGG	58.498	55.000	21.57	4.58	0.00	4.61
3340	4455	4.343239	TCCATGATCATCTCATCACGTCTT	59.657	41.667	4.86	0.00	42.91	3.01
3851	4966	4.112341	GCTGCTGCTCCTTTGGCG	62.112	66.667	8.53	0.00	36.03	5.69
3902	5017	1.354337	CCTGTGCACCGACAGATTCG	61.354	60.000	15.69	0.00	45.39	3.34
3936	5061	5.818136	TCAGCCTAACATTCTGCAAATAC	57.182	39.130	0.00	0.00	0.00	1.89
3955	5080	7.650903	CCAAGAAGAAAGAAAGAAACCAATCAG	59.349	37.037	0.00	0.00	0.00	2.90
3977	5102	5.632034	AATTTAGCTACCCTAGGTCCAAG	57.368	43.478	8.29	0.41	37.09	3.61
3978	5103	7.420913	CCATTAATTTAGCTACCCTAGGTCCAA	60.421	40.741	8.29	0.00	37.09	3.53
4093	5313	2.565391	TGTCACCGACCACACATTAGAT	59.435	45.455	0.00	0.00	0.00	1.98
4150	5412	6.788598	TGATGCTCCATTTTAAGCCAATAA	57.211	33.333	0.00	0.00	37.73	1.40
4224	5489	2.884012	TGTTCTTGTGCATGTGTTAGGG	59.116	45.455	0.00	0.00	0.00	3.53
4225	5490	3.314913	TGTGTTCTTGTGCATGTGTTAGG	59.685	43.478	0.00	0.00	0.00	2.69
4227	5492	3.944650	AGTGTGTTCTTGTGCATGTGTTA	59.055	39.130	0.00	0.00	0.00	2.41
4464	5737	3.580458	GCCTAGATTCTAGCCTTGGATGA	59.420	47.826	14.23	0.00	0.00	2.92
4475	5748	1.781529	ACGGGGAGAGCCTAGATTCTA	59.218	52.381	0.00	0.00	0.00	2.10
4491	5764	1.651987	ACATTGCTCGAATACACGGG	58.348	50.000	0.00	0.00	36.78	5.28
4569	5859	3.258872	TCGACGGGGTGAAAATCTAAGAA	59.741	43.478	0.00	0.00	0.00	2.52
4570	5860	2.827322	TCGACGGGGTGAAAATCTAAGA	59.173	45.455	0.00	0.00	0.00	2.10
4576	5866	0.036671	GGTCTCGACGGGGTGAAAAT	60.037	55.000	0.00	0.00	0.00	1.82
4639	5929	3.017442	GGATCTAGAAAAAGTGGTGGCC	58.983	50.000	0.00	0.00	0.00	5.36
4778	6068	1.186200	CCGACAGGTCTTCATGAGGA	58.814	55.000	2.91	2.91	32.34	3.71
4803	6093	2.895372	GCCGCCGTGGATTGTAGG	60.895	66.667	0.88	0.00	42.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.