Multiple sequence alignment - TraesCS6B01G235300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G235300 chr6B 100.000 2291 0 0 1 2291 399208443 399206153 0.000000e+00 4231
1 TraesCS6B01G235300 chr6B 96.322 2175 57 7 1 2153 617028641 617030814 0.000000e+00 3552
2 TraesCS6B01G235300 chr6B 94.964 139 7 0 2153 2291 381004158 381004020 3.830000e-53 219
3 TraesCS6B01G235300 chr6B 92.857 140 10 0 2151 2290 348294596 348294457 1.070000e-48 204
4 TraesCS6B01G235300 chr6B 92.857 140 10 0 2151 2290 415693607 415693746 1.070000e-48 204
5 TraesCS6B01G235300 chr1B 97.680 2155 46 3 1 2152 651731944 651729791 0.000000e+00 3699
6 TraesCS6B01G235300 chr1B 95.614 1938 59 9 1 1914 17134818 17136753 0.000000e+00 3085
7 TraesCS6B01G235300 chr1B 95.223 1528 50 6 136 1643 656439715 656441239 0.000000e+00 2396
8 TraesCS6B01G235300 chr1B 95.208 793 16 4 1382 2152 672837445 672836653 0.000000e+00 1234
9 TraesCS6B01G235300 chr1B 92.857 140 10 0 2151 2290 630189610 630189471 1.070000e-48 204
10 TraesCS6B01G235300 chr4A 96.731 2172 48 6 1 2152 602465080 602462912 0.000000e+00 3596
11 TraesCS6B01G235300 chr5A 96.455 2172 55 6 1 2152 692979279 692981448 0.000000e+00 3565
12 TraesCS6B01G235300 chr5A 96.202 2001 53 10 174 2152 693957649 693959648 0.000000e+00 3253
13 TraesCS6B01G235300 chr5A 92.449 874 30 6 710 1548 629866321 629867193 0.000000e+00 1216
14 TraesCS6B01G235300 chr5A 89.312 945 53 10 1255 2152 516607171 516608114 0.000000e+00 1142
15 TraesCS6B01G235300 chr2B 96.140 2176 60 8 1 2153 435353246 435351072 0.000000e+00 3531
16 TraesCS6B01G235300 chr2B 93.571 140 8 1 2151 2289 233218826 233218687 8.290000e-50 207
17 TraesCS6B01G235300 chr2B 92.857 140 10 0 2151 2290 114296184 114296323 1.070000e-48 204
18 TraesCS6B01G235300 chr2B 92.857 140 10 0 2151 2290 150507839 150507978 1.070000e-48 204
19 TraesCS6B01G235300 chr5B 95.586 2175 72 7 1 2152 576501507 576503680 0.000000e+00 3463
20 TraesCS6B01G235300 chr5B 93.571 140 9 0 2151 2290 365688407 365688546 2.310000e-50 209
21 TraesCS6B01G235300 chr7B 95.882 2040 61 7 136 2153 709654254 709656292 0.000000e+00 3280
22 TraesCS6B01G235300 chr4B 92.857 140 10 0 2151 2290 440802116 440801977 1.070000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G235300 chr6B 399206153 399208443 2290 True 4231 4231 100.000 1 2291 1 chr6B.!!$R3 2290
1 TraesCS6B01G235300 chr6B 617028641 617030814 2173 False 3552 3552 96.322 1 2153 1 chr6B.!!$F2 2152
2 TraesCS6B01G235300 chr1B 651729791 651731944 2153 True 3699 3699 97.680 1 2152 1 chr1B.!!$R2 2151
3 TraesCS6B01G235300 chr1B 17134818 17136753 1935 False 3085 3085 95.614 1 1914 1 chr1B.!!$F1 1913
4 TraesCS6B01G235300 chr1B 656439715 656441239 1524 False 2396 2396 95.223 136 1643 1 chr1B.!!$F2 1507
5 TraesCS6B01G235300 chr1B 672836653 672837445 792 True 1234 1234 95.208 1382 2152 1 chr1B.!!$R3 770
6 TraesCS6B01G235300 chr4A 602462912 602465080 2168 True 3596 3596 96.731 1 2152 1 chr4A.!!$R1 2151
7 TraesCS6B01G235300 chr5A 692979279 692981448 2169 False 3565 3565 96.455 1 2152 1 chr5A.!!$F3 2151
8 TraesCS6B01G235300 chr5A 693957649 693959648 1999 False 3253 3253 96.202 174 2152 1 chr5A.!!$F4 1978
9 TraesCS6B01G235300 chr5A 629866321 629867193 872 False 1216 1216 92.449 710 1548 1 chr5A.!!$F2 838
10 TraesCS6B01G235300 chr5A 516607171 516608114 943 False 1142 1142 89.312 1255 2152 1 chr5A.!!$F1 897
11 TraesCS6B01G235300 chr2B 435351072 435353246 2174 True 3531 3531 96.140 1 2153 1 chr2B.!!$R2 2152
12 TraesCS6B01G235300 chr5B 576501507 576503680 2173 False 3463 3463 95.586 1 2152 1 chr5B.!!$F2 2151
13 TraesCS6B01G235300 chr7B 709654254 709656292 2038 False 3280 3280 95.882 136 2153 1 chr7B.!!$F1 2017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 1.131638 AGGGTGAAGAGTTGACTGCA 58.868 50.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1319 1.411977 CCAAAGCCAACATCAACCACA 59.588 47.619 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.131638 AGGGTGAAGAGTTGACTGCA 58.868 50.000 0.00 0.00 0.00 4.41
268 269 3.746045 TGTACCAGTCCTCTGTTTCAC 57.254 47.619 0.00 0.00 39.82 3.18
364 365 5.116180 CAGGTATTGCTTATCGTTGGAGAA 58.884 41.667 0.00 0.00 0.00 2.87
474 475 8.539544 TGGAGAAACTCTGTCATTTCATATACA 58.460 33.333 0.00 0.00 37.30 2.29
617 618 5.862924 TTAAGCTAAACAGAGATGCACAC 57.137 39.130 0.00 0.00 0.00 3.82
1161 1163 0.610174 TGCGAGAGGAGCTTGTTGAT 59.390 50.000 0.00 0.00 35.28 2.57
1256 1279 0.461870 ACCGATGCTAGATTTGCGCA 60.462 50.000 5.66 5.66 38.14 6.09
1296 1319 7.826690 TCGAAGGTAAAATAGTTTAGTACGGT 58.173 34.615 0.00 0.00 29.74 4.83
1317 1340 1.412343 GTGGTTGATGTTGGCTTTGGT 59.588 47.619 0.00 0.00 0.00 3.67
1449 1494 5.242434 TGGTTGATGTTGTGTACTGATACC 58.758 41.667 0.00 0.00 0.00 2.73
1601 1675 2.683362 GAGCTACTGTTGGTTATTGGCC 59.317 50.000 0.00 0.00 0.00 5.36
2155 2238 9.950680 AATTGACAGTATTTCTTGTAGTGTTTG 57.049 29.630 0.00 0.00 36.21 2.93
2156 2239 7.490962 TGACAGTATTTCTTGTAGTGTTTGG 57.509 36.000 0.00 0.00 36.21 3.28
2157 2240 7.276658 TGACAGTATTTCTTGTAGTGTTTGGA 58.723 34.615 0.00 0.00 36.21 3.53
2158 2241 7.936847 TGACAGTATTTCTTGTAGTGTTTGGAT 59.063 33.333 0.00 0.00 36.21 3.41
2159 2242 9.431887 GACAGTATTTCTTGTAGTGTTTGGATA 57.568 33.333 0.00 0.00 36.21 2.59
2160 2243 9.216117 ACAGTATTTCTTGTAGTGTTTGGATAC 57.784 33.333 0.00 0.00 33.14 2.24
2178 2261 7.320443 TGGATACATTTGCTCACAATCTAAC 57.680 36.000 0.00 0.00 46.17 2.34
2179 2262 6.318648 TGGATACATTTGCTCACAATCTAACC 59.681 38.462 0.00 0.00 46.17 2.85
2180 2263 6.238759 GGATACATTTGCTCACAATCTAACCC 60.239 42.308 0.00 0.00 35.21 4.11
2181 2264 4.666512 ACATTTGCTCACAATCTAACCCT 58.333 39.130 0.00 0.00 35.21 4.34
2182 2265 4.460382 ACATTTGCTCACAATCTAACCCTG 59.540 41.667 0.00 0.00 35.21 4.45
2183 2266 2.113860 TGCTCACAATCTAACCCTGC 57.886 50.000 0.00 0.00 0.00 4.85
2184 2267 1.340017 TGCTCACAATCTAACCCTGCC 60.340 52.381 0.00 0.00 0.00 4.85
2185 2268 1.340017 GCTCACAATCTAACCCTGCCA 60.340 52.381 0.00 0.00 0.00 4.92
2186 2269 2.684927 GCTCACAATCTAACCCTGCCAT 60.685 50.000 0.00 0.00 0.00 4.40
2187 2270 3.209410 CTCACAATCTAACCCTGCCATC 58.791 50.000 0.00 0.00 0.00 3.51
2188 2271 2.092429 TCACAATCTAACCCTGCCATCC 60.092 50.000 0.00 0.00 0.00 3.51
2189 2272 1.922447 ACAATCTAACCCTGCCATCCA 59.078 47.619 0.00 0.00 0.00 3.41
2190 2273 2.311542 ACAATCTAACCCTGCCATCCAA 59.688 45.455 0.00 0.00 0.00 3.53
2191 2274 3.245586 ACAATCTAACCCTGCCATCCAAA 60.246 43.478 0.00 0.00 0.00 3.28
2192 2275 2.507407 TCTAACCCTGCCATCCAAAC 57.493 50.000 0.00 0.00 0.00 2.93
2193 2276 1.707989 TCTAACCCTGCCATCCAAACA 59.292 47.619 0.00 0.00 0.00 2.83
2194 2277 1.818674 CTAACCCTGCCATCCAAACAC 59.181 52.381 0.00 0.00 0.00 3.32
2195 2278 0.831711 AACCCTGCCATCCAAACACC 60.832 55.000 0.00 0.00 0.00 4.16
2196 2279 1.228831 CCCTGCCATCCAAACACCA 60.229 57.895 0.00 0.00 0.00 4.17
2197 2280 1.535204 CCCTGCCATCCAAACACCAC 61.535 60.000 0.00 0.00 0.00 4.16
2198 2281 0.540365 CCTGCCATCCAAACACCACT 60.540 55.000 0.00 0.00 0.00 4.00
2199 2282 1.331214 CTGCCATCCAAACACCACTT 58.669 50.000 0.00 0.00 0.00 3.16
2200 2283 1.688197 CTGCCATCCAAACACCACTTT 59.312 47.619 0.00 0.00 0.00 2.66
2201 2284 1.411977 TGCCATCCAAACACCACTTTG 59.588 47.619 0.00 0.00 0.00 2.77
2217 2300 6.787085 CCACTTTGGTTAGAGTTAGTTCAG 57.213 41.667 0.00 0.00 31.35 3.02
2218 2301 5.701290 CCACTTTGGTTAGAGTTAGTTCAGG 59.299 44.000 0.00 0.00 31.35 3.86
2219 2302 5.701290 CACTTTGGTTAGAGTTAGTTCAGGG 59.299 44.000 0.00 0.00 0.00 4.45
2220 2303 5.368816 ACTTTGGTTAGAGTTAGTTCAGGGT 59.631 40.000 0.00 0.00 0.00 4.34
2221 2304 5.899631 TTGGTTAGAGTTAGTTCAGGGTT 57.100 39.130 0.00 0.00 0.00 4.11
2222 2305 6.999705 TTGGTTAGAGTTAGTTCAGGGTTA 57.000 37.500 0.00 0.00 0.00 2.85
2223 2306 6.600882 TGGTTAGAGTTAGTTCAGGGTTAG 57.399 41.667 0.00 0.00 0.00 2.34
2224 2307 6.317312 TGGTTAGAGTTAGTTCAGGGTTAGA 58.683 40.000 0.00 0.00 0.00 2.10
2225 2308 6.783977 TGGTTAGAGTTAGTTCAGGGTTAGAA 59.216 38.462 0.00 0.00 0.00 2.10
2226 2309 7.456902 TGGTTAGAGTTAGTTCAGGGTTAGAAT 59.543 37.037 0.00 0.00 0.00 2.40
2227 2310 7.980662 GGTTAGAGTTAGTTCAGGGTTAGAATC 59.019 40.741 0.00 0.00 0.00 2.52
2228 2311 8.751242 GTTAGAGTTAGTTCAGGGTTAGAATCT 58.249 37.037 0.00 0.00 0.00 2.40
2229 2312 9.986157 TTAGAGTTAGTTCAGGGTTAGAATCTA 57.014 33.333 0.00 0.00 0.00 1.98
2230 2313 8.896722 AGAGTTAGTTCAGGGTTAGAATCTAA 57.103 34.615 0.00 0.00 0.00 2.10
2231 2314 8.751242 AGAGTTAGTTCAGGGTTAGAATCTAAC 58.249 37.037 21.48 21.48 38.34 2.34
2232 2315 8.667592 AGTTAGTTCAGGGTTAGAATCTAACT 57.332 34.615 26.42 13.45 40.32 2.24
2233 2316 8.751242 AGTTAGTTCAGGGTTAGAATCTAACTC 58.249 37.037 26.42 24.35 40.64 3.01
2234 2317 8.751242 GTTAGTTCAGGGTTAGAATCTAACTCT 58.249 37.037 25.42 25.42 38.68 3.24
2235 2318 9.986157 TTAGTTCAGGGTTAGAATCTAACTCTA 57.014 33.333 28.99 16.07 36.19 2.43
2236 2319 8.896722 AGTTCAGGGTTAGAATCTAACTCTAA 57.103 34.615 28.99 17.07 36.19 2.10
2245 2328 8.958506 GTTAGAATCTAACTCTAACCTCTGACA 58.041 37.037 22.10 0.00 44.97 3.58
2246 2329 7.639113 AGAATCTAACTCTAACCTCTGACAG 57.361 40.000 0.00 0.00 0.00 3.51
2254 2337 2.593978 CCTCTGACAGGGCCCATG 59.406 66.667 27.56 21.21 38.91 3.66
2255 2338 2.304056 CCTCTGACAGGGCCCATGT 61.304 63.158 27.56 24.41 38.91 3.21
2256 2339 1.222936 CTCTGACAGGGCCCATGTC 59.777 63.158 31.66 31.66 45.88 3.06
2259 2342 2.125106 GACAGGGCCCATGTCGTC 60.125 66.667 27.78 20.01 37.88 4.20
2260 2343 2.927856 ACAGGGCCCATGTCGTCA 60.928 61.111 27.56 0.00 0.00 4.35
2261 2344 2.350895 CAGGGCCCATGTCGTCAA 59.649 61.111 27.56 0.00 0.00 3.18
2262 2345 1.077501 CAGGGCCCATGTCGTCAAT 60.078 57.895 27.56 0.00 0.00 2.57
2263 2346 0.680921 CAGGGCCCATGTCGTCAATT 60.681 55.000 27.56 0.00 0.00 2.32
2264 2347 0.680921 AGGGCCCATGTCGTCAATTG 60.681 55.000 27.56 0.00 0.00 2.32
2265 2348 0.679640 GGGCCCATGTCGTCAATTGA 60.680 55.000 19.95 3.38 0.00 2.57
2266 2349 0.734889 GGCCCATGTCGTCAATTGAG 59.265 55.000 8.80 3.55 0.00 3.02
2267 2350 1.453155 GCCCATGTCGTCAATTGAGT 58.547 50.000 8.80 0.00 0.00 3.41
2268 2351 1.131126 GCCCATGTCGTCAATTGAGTG 59.869 52.381 8.80 4.79 0.00 3.51
2269 2352 2.698803 CCCATGTCGTCAATTGAGTGA 58.301 47.619 8.80 7.31 0.00 3.41
2270 2353 3.073678 CCCATGTCGTCAATTGAGTGAA 58.926 45.455 8.80 2.43 0.00 3.18
2271 2354 3.120199 CCCATGTCGTCAATTGAGTGAAC 60.120 47.826 8.80 5.54 0.00 3.18
2272 2355 3.423515 CCATGTCGTCAATTGAGTGAACG 60.424 47.826 8.80 9.29 0.00 3.95
2273 2356 1.525197 TGTCGTCAATTGAGTGAACGC 59.475 47.619 8.80 6.30 0.00 4.84
2274 2357 1.136336 GTCGTCAATTGAGTGAACGCC 60.136 52.381 8.80 0.00 0.00 5.68
2275 2358 1.148310 CGTCAATTGAGTGAACGCCT 58.852 50.000 8.80 0.00 0.00 5.52
2276 2359 1.531149 CGTCAATTGAGTGAACGCCTT 59.469 47.619 8.80 0.00 0.00 4.35
2277 2360 2.734606 CGTCAATTGAGTGAACGCCTTA 59.265 45.455 8.80 0.00 0.00 2.69
2278 2361 3.370978 CGTCAATTGAGTGAACGCCTTAT 59.629 43.478 8.80 0.00 0.00 1.73
2279 2362 4.565166 CGTCAATTGAGTGAACGCCTTATA 59.435 41.667 8.80 0.00 0.00 0.98
2280 2363 5.234329 CGTCAATTGAGTGAACGCCTTATAT 59.766 40.000 8.80 0.00 0.00 0.86
2281 2364 6.238103 CGTCAATTGAGTGAACGCCTTATATT 60.238 38.462 8.80 0.00 0.00 1.28
2282 2365 7.472543 GTCAATTGAGTGAACGCCTTATATTT 58.527 34.615 8.80 0.00 0.00 1.40
2283 2366 7.429340 GTCAATTGAGTGAACGCCTTATATTTG 59.571 37.037 8.80 0.00 0.00 2.32
2284 2367 7.335673 TCAATTGAGTGAACGCCTTATATTTGA 59.664 33.333 3.38 0.00 0.00 2.69
2285 2368 6.417191 TTGAGTGAACGCCTTATATTTGAC 57.583 37.500 0.00 0.00 0.00 3.18
2286 2369 5.483811 TGAGTGAACGCCTTATATTTGACA 58.516 37.500 0.00 0.00 0.00 3.58
2287 2370 5.580691 TGAGTGAACGCCTTATATTTGACAG 59.419 40.000 0.00 0.00 0.00 3.51
2288 2371 4.876107 AGTGAACGCCTTATATTTGACAGG 59.124 41.667 0.00 0.00 0.00 4.00
2289 2372 4.035208 GTGAACGCCTTATATTTGACAGGG 59.965 45.833 0.00 0.00 0.00 4.45
2290 2373 4.080807 TGAACGCCTTATATTTGACAGGGA 60.081 41.667 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 5.129485 ACCATCTCTATCAAATCCGTCAAGT 59.871 40.000 0.00 0.00 0.00 3.16
268 269 6.982141 AGTACCAAAATGAATATGCAATGCAG 59.018 34.615 14.98 0.00 43.65 4.41
474 475 9.082313 ACAAGTCCTAAACATTTCATTCAGATT 57.918 29.630 0.00 0.00 0.00 2.40
652 653 9.523168 AGGTTTATTAAACAGGTAAGCATACAA 57.477 29.630 18.41 0.00 43.15 2.41
1161 1163 5.279708 GGTCTCCTCTGATTTCTTCTTGACA 60.280 44.000 0.00 0.00 0.00 3.58
1256 1279 5.350504 ACCTTCGAACAGATTCATGAGAT 57.649 39.130 0.00 0.00 34.14 2.75
1296 1319 1.411977 CCAAAGCCAACATCAACCACA 59.588 47.619 0.00 0.00 0.00 4.17
1317 1340 7.184106 GTCGAAACAACTCAACATCAAAAGTA 58.816 34.615 0.00 0.00 0.00 2.24
1601 1675 8.133754 TCATACAATTTAGTATTTTCGGTCCG 57.866 34.615 4.39 4.39 32.56 4.79
2153 2236 7.148086 GGTTAGATTGTGAGCAAATGTATCCAA 60.148 37.037 0.00 0.00 38.21 3.53
2154 2237 6.318648 GGTTAGATTGTGAGCAAATGTATCCA 59.681 38.462 0.00 0.00 38.21 3.41
2155 2238 6.238759 GGGTTAGATTGTGAGCAAATGTATCC 60.239 42.308 0.00 0.00 38.21 2.59
2156 2239 6.543831 AGGGTTAGATTGTGAGCAAATGTATC 59.456 38.462 0.00 0.00 38.21 2.24
2157 2240 6.319658 CAGGGTTAGATTGTGAGCAAATGTAT 59.680 38.462 0.00 0.00 38.21 2.29
2158 2241 5.647658 CAGGGTTAGATTGTGAGCAAATGTA 59.352 40.000 0.00 0.00 38.21 2.29
2159 2242 4.460382 CAGGGTTAGATTGTGAGCAAATGT 59.540 41.667 0.00 0.00 38.21 2.71
2160 2243 4.676196 GCAGGGTTAGATTGTGAGCAAATG 60.676 45.833 0.00 0.00 38.21 2.32
2161 2244 3.445096 GCAGGGTTAGATTGTGAGCAAAT 59.555 43.478 0.00 0.00 38.21 2.32
2162 2245 2.819608 GCAGGGTTAGATTGTGAGCAAA 59.180 45.455 0.00 0.00 38.21 3.68
2163 2246 2.436417 GCAGGGTTAGATTGTGAGCAA 58.564 47.619 0.00 0.00 39.16 3.91
2164 2247 1.340017 GGCAGGGTTAGATTGTGAGCA 60.340 52.381 0.00 0.00 0.00 4.26
2165 2248 1.340017 TGGCAGGGTTAGATTGTGAGC 60.340 52.381 0.00 0.00 0.00 4.26
2166 2249 2.787473 TGGCAGGGTTAGATTGTGAG 57.213 50.000 0.00 0.00 0.00 3.51
2167 2250 2.092429 GGATGGCAGGGTTAGATTGTGA 60.092 50.000 0.00 0.00 0.00 3.58
2168 2251 2.301346 GGATGGCAGGGTTAGATTGTG 58.699 52.381 0.00 0.00 0.00 3.33
2169 2252 1.922447 TGGATGGCAGGGTTAGATTGT 59.078 47.619 0.00 0.00 0.00 2.71
2170 2253 2.734755 TGGATGGCAGGGTTAGATTG 57.265 50.000 0.00 0.00 0.00 2.67
2171 2254 3.245586 TGTTTGGATGGCAGGGTTAGATT 60.246 43.478 0.00 0.00 0.00 2.40
2172 2255 2.311542 TGTTTGGATGGCAGGGTTAGAT 59.688 45.455 0.00 0.00 0.00 1.98
2173 2256 1.707989 TGTTTGGATGGCAGGGTTAGA 59.292 47.619 0.00 0.00 0.00 2.10
2174 2257 1.818674 GTGTTTGGATGGCAGGGTTAG 59.181 52.381 0.00 0.00 0.00 2.34
2175 2258 1.549037 GGTGTTTGGATGGCAGGGTTA 60.549 52.381 0.00 0.00 0.00 2.85
2176 2259 0.831711 GGTGTTTGGATGGCAGGGTT 60.832 55.000 0.00 0.00 0.00 4.11
2177 2260 1.228862 GGTGTTTGGATGGCAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
2178 2261 1.228831 TGGTGTTTGGATGGCAGGG 60.229 57.895 0.00 0.00 0.00 4.45
2179 2262 0.540365 AGTGGTGTTTGGATGGCAGG 60.540 55.000 0.00 0.00 0.00 4.85
2180 2263 1.331214 AAGTGGTGTTTGGATGGCAG 58.669 50.000 0.00 0.00 0.00 4.85
2181 2264 1.411977 CAAAGTGGTGTTTGGATGGCA 59.588 47.619 0.00 0.00 34.34 4.92
2182 2265 2.153366 CAAAGTGGTGTTTGGATGGC 57.847 50.000 0.00 0.00 34.34 4.40
2194 2277 5.701290 CCTGAACTAACTCTAACCAAAGTGG 59.299 44.000 0.00 0.00 45.02 4.00
2195 2278 5.701290 CCCTGAACTAACTCTAACCAAAGTG 59.299 44.000 0.00 0.00 0.00 3.16
2196 2279 5.368816 ACCCTGAACTAACTCTAACCAAAGT 59.631 40.000 0.00 0.00 0.00 2.66
2197 2280 5.866207 ACCCTGAACTAACTCTAACCAAAG 58.134 41.667 0.00 0.00 0.00 2.77
2198 2281 5.899631 ACCCTGAACTAACTCTAACCAAA 57.100 39.130 0.00 0.00 0.00 3.28
2199 2282 5.899631 AACCCTGAACTAACTCTAACCAA 57.100 39.130 0.00 0.00 0.00 3.67
2200 2283 6.317312 TCTAACCCTGAACTAACTCTAACCA 58.683 40.000 0.00 0.00 0.00 3.67
2201 2284 6.847421 TCTAACCCTGAACTAACTCTAACC 57.153 41.667 0.00 0.00 0.00 2.85
2202 2285 8.751242 AGATTCTAACCCTGAACTAACTCTAAC 58.249 37.037 0.00 0.00 0.00 2.34
2203 2286 8.896722 AGATTCTAACCCTGAACTAACTCTAA 57.103 34.615 0.00 0.00 0.00 2.10
2204 2287 9.986157 TTAGATTCTAACCCTGAACTAACTCTA 57.014 33.333 1.90 0.00 0.00 2.43
2205 2288 8.751242 GTTAGATTCTAACCCTGAACTAACTCT 58.249 37.037 21.14 0.00 36.51 3.24
2206 2289 8.751242 AGTTAGATTCTAACCCTGAACTAACTC 58.249 37.037 25.81 3.69 39.92 3.01
2207 2290 8.667592 AGTTAGATTCTAACCCTGAACTAACT 57.332 34.615 25.81 0.00 39.65 2.24
2208 2291 8.751242 AGAGTTAGATTCTAACCCTGAACTAAC 58.249 37.037 25.81 0.00 37.72 2.34
2209 2292 8.896722 AGAGTTAGATTCTAACCCTGAACTAA 57.103 34.615 25.81 0.00 0.00 2.24
2210 2293 9.986157 TTAGAGTTAGATTCTAACCCTGAACTA 57.014 33.333 25.81 17.71 33.43 2.24
2211 2294 8.751242 GTTAGAGTTAGATTCTAACCCTGAACT 58.249 37.037 25.81 18.40 45.71 3.01
2212 2295 8.929827 GTTAGAGTTAGATTCTAACCCTGAAC 57.070 38.462 25.81 20.67 45.71 3.18
2220 2303 9.179909 CTGTCAGAGGTTAGAGTTAGATTCTAA 57.820 37.037 1.90 1.90 35.39 2.10
2221 2304 7.776030 CCTGTCAGAGGTTAGAGTTAGATTCTA 59.224 40.741 0.00 0.00 37.02 2.10
2222 2305 6.605594 CCTGTCAGAGGTTAGAGTTAGATTCT 59.394 42.308 0.00 0.00 37.02 2.40
2223 2306 6.183360 CCCTGTCAGAGGTTAGAGTTAGATTC 60.183 46.154 0.00 0.00 40.87 2.52
2224 2307 5.659079 CCCTGTCAGAGGTTAGAGTTAGATT 59.341 44.000 0.00 0.00 40.87 2.40
2225 2308 5.205056 CCCTGTCAGAGGTTAGAGTTAGAT 58.795 45.833 0.00 0.00 40.87 1.98
2226 2309 4.601084 CCCTGTCAGAGGTTAGAGTTAGA 58.399 47.826 0.00 0.00 40.87 2.10
2227 2310 3.131400 GCCCTGTCAGAGGTTAGAGTTAG 59.869 52.174 0.00 0.00 40.87 2.34
2228 2311 3.097614 GCCCTGTCAGAGGTTAGAGTTA 58.902 50.000 0.00 0.00 40.87 2.24
2229 2312 1.903183 GCCCTGTCAGAGGTTAGAGTT 59.097 52.381 0.00 0.00 40.87 3.01
2230 2313 1.562783 GCCCTGTCAGAGGTTAGAGT 58.437 55.000 0.00 0.00 40.87 3.24
2231 2314 0.827368 GGCCCTGTCAGAGGTTAGAG 59.173 60.000 0.00 0.00 40.87 2.43
2232 2315 0.617820 GGGCCCTGTCAGAGGTTAGA 60.618 60.000 17.04 0.00 40.87 2.10
2233 2316 0.909610 TGGGCCCTGTCAGAGGTTAG 60.910 60.000 25.70 0.00 40.87 2.34
2234 2317 0.253160 ATGGGCCCTGTCAGAGGTTA 60.253 55.000 25.70 0.00 40.87 2.85
2235 2318 1.542375 ATGGGCCCTGTCAGAGGTT 60.542 57.895 25.70 0.00 40.87 3.50
2236 2319 2.125912 ATGGGCCCTGTCAGAGGT 59.874 61.111 25.70 0.00 40.87 3.85
2237 2320 2.262774 GACATGGGCCCTGTCAGAGG 62.263 65.000 32.57 16.12 42.08 3.69
2238 2321 1.222936 GACATGGGCCCTGTCAGAG 59.777 63.158 32.57 16.24 42.08 3.35
2239 2322 2.659063 CGACATGGGCCCTGTCAGA 61.659 63.158 34.32 15.51 42.52 3.27
2240 2323 2.124983 CGACATGGGCCCTGTCAG 60.125 66.667 34.32 27.05 42.52 3.51
2241 2324 2.927856 ACGACATGGGCCCTGTCA 60.928 61.111 34.32 16.49 42.52 3.58
2242 2325 2.125106 GACGACATGGGCCCTGTC 60.125 66.667 29.98 29.98 39.69 3.51
2243 2326 1.852157 ATTGACGACATGGGCCCTGT 61.852 55.000 25.70 23.68 0.00 4.00
2244 2327 0.680921 AATTGACGACATGGGCCCTG 60.681 55.000 25.70 20.51 0.00 4.45
2245 2328 0.680921 CAATTGACGACATGGGCCCT 60.681 55.000 25.70 1.15 0.00 5.19
2246 2329 0.679640 TCAATTGACGACATGGGCCC 60.680 55.000 17.59 17.59 0.00 5.80
2247 2330 0.734889 CTCAATTGACGACATGGGCC 59.265 55.000 3.38 0.00 0.00 5.80
2248 2331 1.131126 CACTCAATTGACGACATGGGC 59.869 52.381 3.38 0.00 0.00 5.36
2249 2332 2.698803 TCACTCAATTGACGACATGGG 58.301 47.619 3.38 0.00 0.00 4.00
2250 2333 3.423515 CGTTCACTCAATTGACGACATGG 60.424 47.826 3.38 0.00 0.00 3.66
2251 2334 3.725356 CGTTCACTCAATTGACGACATG 58.275 45.455 3.38 0.00 0.00 3.21
2252 2335 2.157668 GCGTTCACTCAATTGACGACAT 59.842 45.455 17.71 0.00 0.00 3.06
2253 2336 1.525197 GCGTTCACTCAATTGACGACA 59.475 47.619 17.71 0.00 0.00 4.35
2254 2337 1.136336 GGCGTTCACTCAATTGACGAC 60.136 52.381 17.71 12.58 0.00 4.34
2255 2338 1.144969 GGCGTTCACTCAATTGACGA 58.855 50.000 17.71 9.21 0.00 4.20
2256 2339 1.148310 AGGCGTTCACTCAATTGACG 58.852 50.000 3.38 8.12 0.00 4.35
2257 2340 4.946784 ATAAGGCGTTCACTCAATTGAC 57.053 40.909 3.38 0.00 0.00 3.18
2258 2341 7.335673 TCAAATATAAGGCGTTCACTCAATTGA 59.664 33.333 8.12 8.12 0.00 2.57
2259 2342 7.429340 GTCAAATATAAGGCGTTCACTCAATTG 59.571 37.037 0.00 0.00 0.00 2.32
2260 2343 7.120579 TGTCAAATATAAGGCGTTCACTCAATT 59.879 33.333 0.00 0.00 0.00 2.32
2261 2344 6.597672 TGTCAAATATAAGGCGTTCACTCAAT 59.402 34.615 0.00 0.00 0.00 2.57
2262 2345 5.935206 TGTCAAATATAAGGCGTTCACTCAA 59.065 36.000 0.00 0.00 0.00 3.02
2263 2346 5.483811 TGTCAAATATAAGGCGTTCACTCA 58.516 37.500 0.00 0.00 0.00 3.41
2264 2347 5.006746 CCTGTCAAATATAAGGCGTTCACTC 59.993 44.000 0.00 0.00 0.00 3.51
2265 2348 4.876107 CCTGTCAAATATAAGGCGTTCACT 59.124 41.667 0.00 0.00 0.00 3.41
2266 2349 4.035208 CCCTGTCAAATATAAGGCGTTCAC 59.965 45.833 0.00 0.00 0.00 3.18
2267 2350 4.080807 TCCCTGTCAAATATAAGGCGTTCA 60.081 41.667 0.00 0.00 0.00 3.18
2268 2351 4.448210 TCCCTGTCAAATATAAGGCGTTC 58.552 43.478 0.00 0.00 0.00 3.95
2269 2352 4.497291 TCCCTGTCAAATATAAGGCGTT 57.503 40.909 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.