Multiple sequence alignment - TraesCS6B01G235000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G235000 chr6B 100.000 4311 0 0 2493 6803 396437886 396433576 0.000000e+00 7962
1 TraesCS6B01G235000 chr6B 100.000 1325 0 0 750 2074 396439629 396438305 0.000000e+00 2447
2 TraesCS6B01G235000 chr6B 100.000 495 0 0 1 495 396440378 396439884 0.000000e+00 915
3 TraesCS6B01G235000 chr6B 92.742 124 5 3 115 238 508172311 508172192 7.010000e-40 176
4 TraesCS6B01G235000 chr6B 91.379 116 9 1 1 116 396330724 396330610 2.540000e-34 158
5 TraesCS6B01G235000 chr6D 96.384 3927 81 14 2493 6406 220938840 220934962 0.000000e+00 6408
6 TraesCS6B01G235000 chr6D 95.580 1199 30 5 773 1963 220940412 220939229 0.000000e+00 1899
7 TraesCS6B01G235000 chr6D 88.364 275 27 4 6501 6771 220899573 220899300 6.580000e-85 326
8 TraesCS6B01G235000 chr6D 92.265 181 9 3 315 495 220940600 220940425 1.130000e-62 252
9 TraesCS6B01G235000 chr6D 92.623 122 5 3 117 238 121837968 121838085 9.070000e-39 172
10 TraesCS6B01G235000 chr6D 88.043 92 9 1 4583 4674 267532894 267532805 2.590000e-19 108
11 TraesCS6B01G235000 chr6A 97.887 1278 21 3 3839 5113 302779627 302780901 0.000000e+00 2206
12 TraesCS6B01G235000 chr6A 95.441 1338 36 9 5110 6429 302781137 302782467 0.000000e+00 2109
13 TraesCS6B01G235000 chr6A 93.602 1313 37 12 750 2029 302775630 302776928 0.000000e+00 1916
14 TraesCS6B01G235000 chr6A 96.579 643 12 1 2718 3360 302778996 302779628 0.000000e+00 1057
15 TraesCS6B01G235000 chr6A 88.976 254 16 8 248 495 302775382 302775629 3.080000e-78 303
16 TraesCS6B01G235000 chr6A 89.908 218 20 1 6556 6771 302782602 302782819 5.200000e-71 279
17 TraesCS6B01G235000 chr6A 88.991 218 4 4 2503 2720 302778495 302778692 1.130000e-62 252
18 TraesCS6B01G235000 chr6A 90.840 131 11 1 6472 6602 302782470 302782599 2.520000e-39 174
19 TraesCS6B01G235000 chr6A 88.043 92 9 1 4583 4674 63594947 63595036 2.590000e-19 108
20 TraesCS6B01G235000 chr2B 86.810 326 43 0 4199 4524 777330052 777330377 1.390000e-96 364
21 TraesCS6B01G235000 chr2B 90.909 132 8 4 115 246 110817932 110817805 2.520000e-39 174
22 TraesCS6B01G235000 chr2B 91.935 124 6 3 115 238 462408879 462408760 3.260000e-38 171
23 TraesCS6B01G235000 chr2B 91.892 111 9 0 6 116 360328744 360328634 9.140000e-34 156
24 TraesCS6B01G235000 chr2B 90.517 116 11 0 1 116 191486647 191486532 3.290000e-33 154
25 TraesCS6B01G235000 chr2B 93.590 78 5 0 5353 5430 777330718 777330795 4.310000e-22 117
26 TraesCS6B01G235000 chr1D 92.571 175 10 3 4405 4579 364491645 364491816 1.470000e-61 248
27 TraesCS6B01G235000 chr1D 85.253 217 16 5 4665 4880 364491800 364492001 6.910000e-50 209
28 TraesCS6B01G235000 chr1D 81.132 212 29 8 1729 1933 93124936 93125143 7.060000e-35 159
29 TraesCS6B01G235000 chr1A 81.172 239 34 8 1732 1963 91047393 91047159 1.510000e-41 182
30 TraesCS6B01G235000 chr1B 91.667 132 8 3 115 245 630474382 630474253 5.420000e-41 180
31 TraesCS6B01G235000 chr1B 79.661 236 37 8 1729 1957 148472643 148472874 7.060000e-35 159
32 TraesCS6B01G235000 chr1B 90.517 116 11 0 1 116 265220950 265220835 3.290000e-33 154
33 TraesCS6B01G235000 chr1B 93.590 78 5 0 1638 1715 401618960 401619037 4.310000e-22 117
34 TraesCS6B01G235000 chr7A 92.063 126 7 3 116 240 732945882 732946005 2.520000e-39 174
35 TraesCS6B01G235000 chr7A 90.323 93 7 2 1631 1721 205123820 205123912 3.330000e-23 121
36 TraesCS6B01G235000 chr5A 92.000 125 6 3 115 239 218990045 218990165 9.070000e-39 172
37 TraesCS6B01G235000 chr5A 90.526 95 3 4 4579 4672 96428506 96428417 3.330000e-23 121
38 TraesCS6B01G235000 chr3B 92.000 125 6 3 115 239 8039285 8039405 9.070000e-39 172
39 TraesCS6B01G235000 chr3B 90.517 116 11 0 1 116 119460109 119459994 3.290000e-33 154
40 TraesCS6B01G235000 chr2A 91.935 124 6 3 115 238 747303716 747303597 3.260000e-38 171
41 TraesCS6B01G235000 chr2A 94.872 78 4 0 5353 5430 779216471 779216394 9.270000e-24 122
42 TraesCS6B01G235000 chr2A 88.298 94 7 3 4583 4675 131004988 131005078 7.210000e-20 110
43 TraesCS6B01G235000 chr2A 92.308 78 5 1 1638 1715 609736924 609736848 7.210000e-20 110
44 TraesCS6B01G235000 chr7B 91.304 115 10 0 1 115 525593763 525593877 2.540000e-34 158
45 TraesCS6B01G235000 chr7B 90.598 117 11 0 1 117 189668214 189668330 9.140000e-34 156
46 TraesCS6B01G235000 chr7B 90.598 117 11 0 1 117 439544754 439544870 9.140000e-34 156
47 TraesCS6B01G235000 chr5B 90.517 116 11 0 1 116 96015013 96014898 3.290000e-33 154
48 TraesCS6B01G235000 chr4B 81.250 208 24 7 1732 1932 133637560 133637759 3.290000e-33 154
49 TraesCS6B01G235000 chr7D 88.000 100 5 5 4583 4682 175941732 175941824 2.010000e-20 111
50 TraesCS6B01G235000 chr3D 88.172 93 8 2 4583 4674 46481637 46481727 2.590000e-19 108
51 TraesCS6B01G235000 chr2D 88.043 92 9 1 4583 4674 559981110 559981199 2.590000e-19 108
52 TraesCS6B01G235000 chr2D 90.909 77 7 0 1638 1714 75504970 75504894 3.360000e-18 104
53 TraesCS6B01G235000 chr5D 91.026 78 7 0 1638 1715 60477047 60476970 9.330000e-19 106
54 TraesCS6B01G235000 chr5D 91.026 78 7 0 1638 1715 309047465 309047388 9.330000e-19 106
55 TraesCS6B01G235000 chr4D 91.026 78 7 0 1638 1715 502014066 502014143 9.330000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G235000 chr6B 396433576 396440378 6802 True 3774.666667 7962 100.000 1 6803 3 chr6B.!!$R3 6802
1 TraesCS6B01G235000 chr6D 220934962 220940600 5638 True 2853.000000 6408 94.743 315 6406 3 chr6D.!!$R3 6091
2 TraesCS6B01G235000 chr6A 302775382 302782819 7437 False 1037.000000 2206 92.778 248 6771 8 chr6A.!!$F2 6523
3 TraesCS6B01G235000 chr2B 777330052 777330795 743 False 240.500000 364 90.200 4199 5430 2 chr2B.!!$F1 1231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.034337 GTGTGCGTTCTTAGGGGTGA 59.966 55.0 0.00 0.00 0.00 4.02 F
182 183 0.320374 TGTGCGTTCTTAGGGGTGAG 59.680 55.0 0.00 0.00 0.00 3.51 F
183 184 0.320697 GTGCGTTCTTAGGGGTGAGT 59.679 55.0 0.00 0.00 0.00 3.41 F
185 186 0.320697 GCGTTCTTAGGGGTGAGTGT 59.679 55.0 0.00 0.00 0.00 3.55 F
298 300 0.325933 TCAGTCCCATCTGCAACCTG 59.674 55.0 0.00 0.00 35.63 4.00 F
461 468 0.952984 GGCCAAGAGTCTCTGTGCAC 60.953 60.0 19.87 10.75 0.00 4.57 F
2063 2103 0.036022 GAGGCTAGGGGATGCACATC 59.964 60.0 1.86 1.86 37.11 3.06 F
2622 3801 0.033109 GGAGAAATTGGTGGGAGGGG 60.033 60.0 0.00 0.00 0.00 4.79 F
3753 5248 0.108945 GGCTGAAGCTTGCAACCATC 60.109 55.0 2.10 0.00 41.70 3.51 F
5263 7001 0.036388 GTGCTGGTTTGATCGGAGGA 60.036 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2084 0.036022 GATGTGCATCCCCTAGCCTC 59.964 60.000 0.00 0.0 31.76 4.70 R
2046 2086 0.403271 ATGATGTGCATCCCCTAGCC 59.597 55.000 9.39 0.0 37.02 3.93 R
2050 2090 1.155323 ATCCATGATGTGCATCCCCT 58.845 50.000 9.39 0.0 37.02 4.79 R
2051 2091 1.254026 CATCCATGATGTGCATCCCC 58.746 55.000 9.39 0.0 35.54 4.81 R
2053 2093 1.991121 ACCATCCATGATGTGCATCC 58.009 50.000 9.39 0.0 38.28 3.51 R
2523 3702 1.668047 CGTACGTTTCCTCTGTCCCAC 60.668 57.143 7.22 0.0 0.00 4.61 R
3642 5137 0.178068 TCGCCTGCATCCTTACCTTC 59.822 55.000 0.00 0.0 0.00 3.46 R
3809 5305 1.279496 CCAACTCATCTCCACTCCCA 58.721 55.000 0.00 0.0 0.00 4.37 R
5567 7305 2.674852 CAGTCGACAAAGGGACATCATG 59.325 50.000 19.50 0.0 35.63 3.07 R
6468 8223 0.033109 AATGCCCTTAGAAGCACCCC 60.033 55.000 0.00 0.0 42.84 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.867429 CTTGTTTCATGAACCGCCATC 58.133 47.619 7.89 0.00 37.45 3.51
21 22 2.198827 TGTTTCATGAACCGCCATCT 57.801 45.000 7.89 0.00 37.45 2.90
22 23 2.513753 TGTTTCATGAACCGCCATCTT 58.486 42.857 7.89 0.00 37.45 2.40
23 24 2.487762 TGTTTCATGAACCGCCATCTTC 59.512 45.455 7.89 0.00 37.45 2.87
24 25 2.487762 GTTTCATGAACCGCCATCTTCA 59.512 45.455 7.89 0.00 31.85 3.02
25 26 2.488204 TCATGAACCGCCATCTTCAA 57.512 45.000 0.00 0.00 30.32 2.69
26 27 2.083774 TCATGAACCGCCATCTTCAAC 58.916 47.619 0.00 0.00 30.32 3.18
27 28 1.811965 CATGAACCGCCATCTTCAACA 59.188 47.619 0.00 0.00 30.32 3.33
28 29 2.198827 TGAACCGCCATCTTCAACAT 57.801 45.000 0.00 0.00 0.00 2.71
29 30 2.083774 TGAACCGCCATCTTCAACATC 58.916 47.619 0.00 0.00 0.00 3.06
30 31 2.290260 TGAACCGCCATCTTCAACATCT 60.290 45.455 0.00 0.00 0.00 2.90
31 32 2.496899 ACCGCCATCTTCAACATCTT 57.503 45.000 0.00 0.00 0.00 2.40
32 33 2.359900 ACCGCCATCTTCAACATCTTC 58.640 47.619 0.00 0.00 0.00 2.87
33 34 2.026822 ACCGCCATCTTCAACATCTTCT 60.027 45.455 0.00 0.00 0.00 2.85
34 35 3.012518 CCGCCATCTTCAACATCTTCTT 58.987 45.455 0.00 0.00 0.00 2.52
35 36 3.181503 CCGCCATCTTCAACATCTTCTTG 60.182 47.826 0.00 0.00 0.00 3.02
36 37 3.686241 CGCCATCTTCAACATCTTCTTGA 59.314 43.478 0.00 0.00 0.00 3.02
37 38 4.201792 CGCCATCTTCAACATCTTCTTGAG 60.202 45.833 0.00 0.00 0.00 3.02
38 39 4.940046 GCCATCTTCAACATCTTCTTGAGA 59.060 41.667 0.00 0.00 39.13 3.27
39 40 5.163774 GCCATCTTCAACATCTTCTTGAGAC 60.164 44.000 0.00 0.00 37.17 3.36
40 41 6.171921 CCATCTTCAACATCTTCTTGAGACT 58.828 40.000 0.00 0.00 37.17 3.24
41 42 6.654161 CCATCTTCAACATCTTCTTGAGACTT 59.346 38.462 0.00 0.00 37.17 3.01
42 43 7.148440 CCATCTTCAACATCTTCTTGAGACTTC 60.148 40.741 0.00 0.00 37.17 3.01
43 44 7.060383 TCTTCAACATCTTCTTGAGACTTCT 57.940 36.000 0.00 0.00 37.17 2.85
44 45 7.151308 TCTTCAACATCTTCTTGAGACTTCTC 58.849 38.462 0.00 0.00 43.15 2.87
57 58 4.057432 GAGACTTCTCATTATGAGCAGCC 58.943 47.826 18.95 10.34 40.63 4.85
58 59 3.453717 AGACTTCTCATTATGAGCAGCCA 59.546 43.478 18.95 0.00 40.63 4.75
59 60 3.806380 ACTTCTCATTATGAGCAGCCAG 58.194 45.455 18.95 10.99 40.63 4.85
60 61 3.199508 ACTTCTCATTATGAGCAGCCAGT 59.800 43.478 18.95 11.49 40.63 4.00
61 62 3.189618 TCTCATTATGAGCAGCCAGTG 57.810 47.619 16.72 0.00 43.95 3.66
62 63 2.767960 TCTCATTATGAGCAGCCAGTGA 59.232 45.455 16.72 0.00 43.95 3.41
63 64 3.390311 TCTCATTATGAGCAGCCAGTGAT 59.610 43.478 16.72 0.00 43.95 3.06
64 65 4.590222 TCTCATTATGAGCAGCCAGTGATA 59.410 41.667 16.72 0.00 43.95 2.15
65 66 5.247792 TCTCATTATGAGCAGCCAGTGATAT 59.752 40.000 16.72 0.00 43.95 1.63
66 67 5.243207 TCATTATGAGCAGCCAGTGATATG 58.757 41.667 0.00 0.00 0.00 1.78
67 68 4.961438 TTATGAGCAGCCAGTGATATGA 57.039 40.909 0.00 0.00 0.00 2.15
68 69 2.609427 TGAGCAGCCAGTGATATGAC 57.391 50.000 0.00 0.00 0.00 3.06
69 70 1.139654 TGAGCAGCCAGTGATATGACC 59.860 52.381 0.00 0.00 0.00 4.02
70 71 0.471617 AGCAGCCAGTGATATGACCC 59.528 55.000 0.00 0.00 0.00 4.46
71 72 0.882042 GCAGCCAGTGATATGACCCG 60.882 60.000 0.00 0.00 0.00 5.28
72 73 0.250038 CAGCCAGTGATATGACCCGG 60.250 60.000 0.00 0.00 0.00 5.73
73 74 1.598130 GCCAGTGATATGACCCGGC 60.598 63.158 7.46 7.46 0.00 6.13
74 75 1.071471 CCAGTGATATGACCCGGCC 59.929 63.158 0.00 0.00 0.00 6.13
75 76 1.071471 CAGTGATATGACCCGGCCC 59.929 63.158 0.00 0.00 0.00 5.80
76 77 2.147387 AGTGATATGACCCGGCCCC 61.147 63.158 0.00 0.00 0.00 5.80
77 78 2.147387 GTGATATGACCCGGCCCCT 61.147 63.158 0.00 0.00 0.00 4.79
78 79 1.841556 TGATATGACCCGGCCCCTC 60.842 63.158 0.00 0.00 0.00 4.30
79 80 2.529389 ATATGACCCGGCCCCTCC 60.529 66.667 0.00 0.00 0.00 4.30
80 81 3.115017 ATATGACCCGGCCCCTCCT 62.115 63.158 0.00 0.00 0.00 3.69
108 109 3.412386 GGCATACCCAATAGTCATGTCC 58.588 50.000 0.00 0.00 0.00 4.02
109 110 3.412386 GCATACCCAATAGTCATGTCCC 58.588 50.000 0.00 0.00 0.00 4.46
110 111 3.810743 GCATACCCAATAGTCATGTCCCC 60.811 52.174 0.00 0.00 0.00 4.81
111 112 1.979809 ACCCAATAGTCATGTCCCCA 58.020 50.000 0.00 0.00 0.00 4.96
112 113 2.283834 ACCCAATAGTCATGTCCCCAA 58.716 47.619 0.00 0.00 0.00 4.12
113 114 2.025321 ACCCAATAGTCATGTCCCCAAC 60.025 50.000 0.00 0.00 0.00 3.77
114 115 2.025416 CCCAATAGTCATGTCCCCAACA 60.025 50.000 0.00 0.00 43.51 3.33
120 121 2.044053 ATGTCCCCAACATGCCGG 60.044 61.111 0.00 0.00 47.00 6.13
122 123 4.740822 GTCCCCAACATGCCGGCT 62.741 66.667 29.70 10.60 0.00 5.52
123 124 4.424711 TCCCCAACATGCCGGCTC 62.425 66.667 29.70 0.00 0.00 4.70
124 125 4.738998 CCCCAACATGCCGGCTCA 62.739 66.667 29.70 8.87 0.00 4.26
125 126 3.136123 CCCAACATGCCGGCTCAG 61.136 66.667 29.70 19.20 0.00 3.35
126 127 2.360350 CCAACATGCCGGCTCAGT 60.360 61.111 29.70 19.90 0.00 3.41
127 128 2.401766 CCAACATGCCGGCTCAGTC 61.402 63.158 29.70 0.00 0.00 3.51
128 129 1.376424 CAACATGCCGGCTCAGTCT 60.376 57.895 29.70 10.82 0.00 3.24
129 130 0.957395 CAACATGCCGGCTCAGTCTT 60.957 55.000 29.70 7.25 0.00 3.01
130 131 0.250901 AACATGCCGGCTCAGTCTTT 60.251 50.000 29.70 8.03 0.00 2.52
131 132 0.674895 ACATGCCGGCTCAGTCTTTC 60.675 55.000 29.70 0.00 0.00 2.62
132 133 1.448540 ATGCCGGCTCAGTCTTTCG 60.449 57.895 29.70 0.00 0.00 3.46
133 134 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
134 135 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
135 136 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
136 137 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
137 138 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
138 139 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
139 140 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
140 141 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
141 142 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
142 143 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
143 144 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
144 145 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
145 146 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
146 147 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
147 148 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
148 149 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
149 150 2.511452 CGGAGGTGCTCATAGGGGG 61.511 68.421 0.00 0.00 31.08 5.40
150 151 1.384643 GGAGGTGCTCATAGGGGGT 60.385 63.158 0.00 0.00 31.08 4.95
151 152 0.105142 GGAGGTGCTCATAGGGGGTA 60.105 60.000 0.00 0.00 31.08 3.69
152 153 1.343069 GAGGTGCTCATAGGGGGTAG 58.657 60.000 0.00 0.00 0.00 3.18
153 154 0.104934 AGGTGCTCATAGGGGGTAGG 60.105 60.000 0.00 0.00 0.00 3.18
154 155 1.128188 GGTGCTCATAGGGGGTAGGG 61.128 65.000 0.00 0.00 0.00 3.53
155 156 0.400093 GTGCTCATAGGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
156 157 0.399949 TGCTCATAGGGGGTAGGGTG 60.400 60.000 0.00 0.00 0.00 4.61
157 158 0.400093 GCTCATAGGGGGTAGGGTGT 60.400 60.000 0.00 0.00 0.00 4.16
158 159 1.424638 CTCATAGGGGGTAGGGTGTG 58.575 60.000 0.00 0.00 0.00 3.82
159 160 0.693092 TCATAGGGGGTAGGGTGTGC 60.693 60.000 0.00 0.00 0.00 4.57
160 161 1.764854 ATAGGGGGTAGGGTGTGCG 60.765 63.158 0.00 0.00 0.00 5.34
161 162 2.540842 ATAGGGGGTAGGGTGTGCGT 62.541 60.000 0.00 0.00 0.00 5.24
162 163 4.404098 GGGGGTAGGGTGTGCGTG 62.404 72.222 0.00 0.00 0.00 5.34
163 164 3.633116 GGGGTAGGGTGTGCGTGT 61.633 66.667 0.00 0.00 0.00 4.49
164 165 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
165 166 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
166 167 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
167 168 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
170 171 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
171 172 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
172 173 2.510464 TGTGCGTGTGTGCGTTCT 60.510 55.556 0.00 0.00 37.81 3.01
173 174 2.103647 TGTGCGTGTGTGCGTTCTT 61.104 52.632 0.00 0.00 37.81 2.52
174 175 0.806492 TGTGCGTGTGTGCGTTCTTA 60.806 50.000 0.00 0.00 37.81 2.10
175 176 0.111266 GTGCGTGTGTGCGTTCTTAG 60.111 55.000 0.00 0.00 37.81 2.18
176 177 1.218875 TGCGTGTGTGCGTTCTTAGG 61.219 55.000 0.00 0.00 37.81 2.69
177 178 1.897398 GCGTGTGTGCGTTCTTAGGG 61.897 60.000 0.00 0.00 0.00 3.53
178 179 1.289109 CGTGTGTGCGTTCTTAGGGG 61.289 60.000 0.00 0.00 0.00 4.79
179 180 0.250166 GTGTGTGCGTTCTTAGGGGT 60.250 55.000 0.00 0.00 0.00 4.95
180 181 0.250124 TGTGTGCGTTCTTAGGGGTG 60.250 55.000 0.00 0.00 0.00 4.61
181 182 0.034337 GTGTGCGTTCTTAGGGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
182 183 0.320374 TGTGCGTTCTTAGGGGTGAG 59.680 55.000 0.00 0.00 0.00 3.51
183 184 0.320697 GTGCGTTCTTAGGGGTGAGT 59.679 55.000 0.00 0.00 0.00 3.41
184 185 0.320374 TGCGTTCTTAGGGGTGAGTG 59.680 55.000 0.00 0.00 0.00 3.51
185 186 0.320697 GCGTTCTTAGGGGTGAGTGT 59.679 55.000 0.00 0.00 0.00 3.55
186 187 1.547372 GCGTTCTTAGGGGTGAGTGTA 59.453 52.381 0.00 0.00 0.00 2.90
187 188 2.167900 GCGTTCTTAGGGGTGAGTGTAT 59.832 50.000 0.00 0.00 0.00 2.29
188 189 3.782046 CGTTCTTAGGGGTGAGTGTATG 58.218 50.000 0.00 0.00 0.00 2.39
189 190 3.532542 GTTCTTAGGGGTGAGTGTATGC 58.467 50.000 0.00 0.00 0.00 3.14
190 191 2.827755 TCTTAGGGGTGAGTGTATGCA 58.172 47.619 0.00 0.00 0.00 3.96
191 192 2.500098 TCTTAGGGGTGAGTGTATGCAC 59.500 50.000 5.71 5.71 45.57 4.57
210 211 4.840911 GCACATGTATATGAGCACTTGTG 58.159 43.478 15.17 13.91 46.18 3.33
211 212 4.333649 GCACATGTATATGAGCACTTGTGT 59.666 41.667 15.17 1.88 46.18 3.72
212 213 5.503031 GCACATGTATATGAGCACTTGTGTC 60.503 44.000 15.17 10.12 46.18 3.67
213 214 5.814188 CACATGTATATGAGCACTTGTGTCT 59.186 40.000 6.45 0.67 41.91 3.41
214 215 5.814188 ACATGTATATGAGCACTTGTGTCTG 59.186 40.000 6.45 0.00 37.73 3.51
215 216 5.405935 TGTATATGAGCACTTGTGTCTGT 57.594 39.130 2.61 0.00 0.00 3.41
216 217 6.524101 TGTATATGAGCACTTGTGTCTGTA 57.476 37.500 2.61 0.00 0.00 2.74
217 218 7.112452 TGTATATGAGCACTTGTGTCTGTAT 57.888 36.000 2.61 4.69 0.00 2.29
218 219 7.555965 TGTATATGAGCACTTGTGTCTGTATT 58.444 34.615 2.61 0.00 0.00 1.89
219 220 8.040727 TGTATATGAGCACTTGTGTCTGTATTT 58.959 33.333 2.61 0.00 0.00 1.40
220 221 5.618056 ATGAGCACTTGTGTCTGTATTTG 57.382 39.130 2.61 0.00 0.00 2.32
221 222 4.702831 TGAGCACTTGTGTCTGTATTTGA 58.297 39.130 2.61 0.00 0.00 2.69
222 223 5.308014 TGAGCACTTGTGTCTGTATTTGAT 58.692 37.500 2.61 0.00 0.00 2.57
223 224 5.179929 TGAGCACTTGTGTCTGTATTTGATG 59.820 40.000 2.61 0.00 0.00 3.07
224 225 5.065914 AGCACTTGTGTCTGTATTTGATGT 58.934 37.500 2.61 0.00 0.00 3.06
225 226 5.532406 AGCACTTGTGTCTGTATTTGATGTT 59.468 36.000 2.61 0.00 0.00 2.71
226 227 6.710295 AGCACTTGTGTCTGTATTTGATGTTA 59.290 34.615 2.61 0.00 0.00 2.41
227 228 7.228507 AGCACTTGTGTCTGTATTTGATGTTAA 59.771 33.333 2.61 0.00 0.00 2.01
228 229 7.860373 GCACTTGTGTCTGTATTTGATGTTAAA 59.140 33.333 2.61 0.00 0.00 1.52
229 230 9.729023 CACTTGTGTCTGTATTTGATGTTAAAA 57.271 29.630 0.00 0.00 0.00 1.52
230 231 9.950680 ACTTGTGTCTGTATTTGATGTTAAAAG 57.049 29.630 0.00 0.00 0.00 2.27
231 232 9.398170 CTTGTGTCTGTATTTGATGTTAAAAGG 57.602 33.333 0.00 0.00 0.00 3.11
232 233 8.684386 TGTGTCTGTATTTGATGTTAAAAGGA 57.316 30.769 0.00 0.00 0.00 3.36
233 234 9.126151 TGTGTCTGTATTTGATGTTAAAAGGAA 57.874 29.630 0.00 0.00 0.00 3.36
234 235 9.959749 GTGTCTGTATTTGATGTTAAAAGGAAA 57.040 29.630 0.00 0.00 0.00 3.13
266 267 1.201429 AGGACTAAGTGGGCTGTGGG 61.201 60.000 0.00 0.00 0.00 4.61
288 290 3.372440 GACTCCCATTTTCAGTCCCAT 57.628 47.619 0.00 0.00 31.93 4.00
289 291 3.282885 GACTCCCATTTTCAGTCCCATC 58.717 50.000 0.00 0.00 31.93 3.51
294 296 2.827322 CCATTTTCAGTCCCATCTGCAA 59.173 45.455 0.00 0.00 35.63 4.08
296 298 1.909700 TTTCAGTCCCATCTGCAACC 58.090 50.000 0.00 0.00 35.63 3.77
297 299 1.067295 TTCAGTCCCATCTGCAACCT 58.933 50.000 0.00 0.00 35.63 3.50
298 300 0.325933 TCAGTCCCATCTGCAACCTG 59.674 55.000 0.00 0.00 35.63 4.00
299 301 0.325933 CAGTCCCATCTGCAACCTGA 59.674 55.000 0.00 0.00 0.00 3.86
300 302 1.064906 CAGTCCCATCTGCAACCTGAT 60.065 52.381 0.00 0.00 0.00 2.90
302 304 0.994247 TCCCATCTGCAACCTGATGT 59.006 50.000 11.45 0.00 42.54 3.06
303 305 1.065199 TCCCATCTGCAACCTGATGTC 60.065 52.381 11.45 0.00 42.54 3.06
304 306 1.340308 CCCATCTGCAACCTGATGTCA 60.340 52.381 11.45 0.00 42.54 3.58
305 307 1.741706 CCATCTGCAACCTGATGTCAC 59.258 52.381 11.45 0.00 42.54 3.67
306 308 1.741706 CATCTGCAACCTGATGTCACC 59.258 52.381 5.69 0.00 40.51 4.02
307 309 1.059098 TCTGCAACCTGATGTCACCT 58.941 50.000 0.00 0.00 0.00 4.00
345 347 5.185056 ACCCAACAACACAAATATTAGAGGC 59.815 40.000 0.00 0.00 0.00 4.70
451 458 2.121963 TGGGTGGAGGCCAAGAGT 60.122 61.111 5.01 0.00 34.18 3.24
452 459 2.190488 CTGGGTGGAGGCCAAGAGTC 62.190 65.000 5.01 0.00 34.18 3.36
461 468 0.952984 GGCCAAGAGTCTCTGTGCAC 60.953 60.000 19.87 10.75 0.00 4.57
864 871 3.734293 CGAATCTCCTTCTTCCGGTACAC 60.734 52.174 0.00 0.00 0.00 2.90
975 982 3.649986 GCGTGGCGTTCTGTGCTT 61.650 61.111 0.00 0.00 0.00 3.91
1007 1014 4.728058 TCGATTCGCGATGCATGA 57.272 50.000 10.88 0.84 45.59 3.07
1028 1035 2.131183 GCGCTTATTCTGCCTAGTCTG 58.869 52.381 0.00 0.00 0.00 3.51
1031 1038 3.181486 CGCTTATTCTGCCTAGTCTGTGA 60.181 47.826 0.00 0.00 0.00 3.58
1035 1042 6.402658 GCTTATTCTGCCTAGTCTGTGAAAAC 60.403 42.308 0.00 0.00 0.00 2.43
1046 1053 4.763793 AGTCTGTGAAAACTAATGCATGCT 59.236 37.500 20.33 1.26 0.00 3.79
1089 1096 3.057876 CCTGCGTAGATATCTGGAGTCAC 60.058 52.174 15.79 3.36 0.00 3.67
1132 1139 2.159114 TGTTTTTGCCTTTCAGAGTGGC 60.159 45.455 8.39 8.39 46.26 5.01
1142 1149 2.043450 AGAGTGGCGGAGAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
1475 1482 5.061560 GCATATCGTTAATGCTGAGCTCTAC 59.938 44.000 16.19 7.45 45.05 2.59
1480 1487 4.502282 CGTTAATGCTGAGCTCTACAGAAG 59.498 45.833 16.19 3.57 37.54 2.85
1691 1706 5.897050 TCAATTTTAACTGCCAAAACGTCT 58.103 33.333 0.00 0.00 0.00 4.18
1705 1720 6.361481 GCCAAAACGTCTTACATTTAGAAACC 59.639 38.462 0.00 0.00 0.00 3.27
1726 1741 2.422519 CGAGGGAGTAGTAACTAGCCCA 60.423 54.545 12.51 0.00 35.45 5.36
1779 1794 5.291128 GGAGTTGTGTCGGATTTGTATACAG 59.709 44.000 5.56 0.00 0.00 2.74
1857 1872 3.475774 GTAAGTGCGCACGGACCG 61.476 66.667 32.94 13.61 37.15 4.79
2029 2069 4.191015 GATTGGGCGGGGAGGGAC 62.191 72.222 0.00 0.00 0.00 4.46
2049 2089 3.644606 CAGGTGCAGGGTGAGGCT 61.645 66.667 0.00 0.00 0.00 4.58
2050 2090 2.122729 AGGTGCAGGGTGAGGCTA 59.877 61.111 0.00 0.00 0.00 3.93
2051 2091 1.992277 AGGTGCAGGGTGAGGCTAG 60.992 63.158 0.00 0.00 0.00 3.42
2052 2092 2.586792 GTGCAGGGTGAGGCTAGG 59.413 66.667 0.00 0.00 0.00 3.02
2053 2093 2.688666 TGCAGGGTGAGGCTAGGG 60.689 66.667 0.00 0.00 0.00 3.53
2054 2094 3.483869 GCAGGGTGAGGCTAGGGG 61.484 72.222 0.00 0.00 0.00 4.79
2055 2095 2.368594 CAGGGTGAGGCTAGGGGA 59.631 66.667 0.00 0.00 0.00 4.81
2056 2096 1.074167 CAGGGTGAGGCTAGGGGAT 60.074 63.158 0.00 0.00 0.00 3.85
2057 2097 1.074167 AGGGTGAGGCTAGGGGATG 60.074 63.158 0.00 0.00 0.00 3.51
2058 2098 2.823758 GGGTGAGGCTAGGGGATGC 61.824 68.421 0.00 0.00 0.00 3.91
2059 2099 2.072487 GGTGAGGCTAGGGGATGCA 61.072 63.158 0.00 0.00 0.00 3.96
2060 2100 1.147153 GTGAGGCTAGGGGATGCAC 59.853 63.158 0.00 0.00 0.00 4.57
2061 2101 1.306911 TGAGGCTAGGGGATGCACA 60.307 57.895 0.00 0.00 0.00 4.57
2062 2102 0.695462 TGAGGCTAGGGGATGCACAT 60.695 55.000 0.00 0.00 0.00 3.21
2063 2103 0.036022 GAGGCTAGGGGATGCACATC 59.964 60.000 1.86 1.86 37.11 3.06
2064 2104 0.695462 AGGCTAGGGGATGCACATCA 60.695 55.000 12.43 0.00 39.54 3.07
2065 2105 0.403271 GGCTAGGGGATGCACATCAT 59.597 55.000 12.43 1.09 39.54 2.45
2066 2106 1.531423 GCTAGGGGATGCACATCATG 58.469 55.000 12.43 0.00 39.54 3.07
2067 2107 1.885359 GCTAGGGGATGCACATCATGG 60.885 57.143 12.43 1.83 39.54 3.66
2068 2108 1.701292 CTAGGGGATGCACATCATGGA 59.299 52.381 12.43 0.00 39.54 3.41
2069 2109 1.155323 AGGGGATGCACATCATGGAT 58.845 50.000 12.43 0.00 43.10 3.41
2070 2110 1.203013 AGGGGATGCACATCATGGATG 60.203 52.381 12.43 4.74 39.93 3.51
2071 2111 1.254026 GGGATGCACATCATGGATGG 58.746 55.000 12.43 1.78 43.60 3.51
2072 2112 1.479942 GGGATGCACATCATGGATGGT 60.480 52.381 12.43 0.00 43.60 3.55
2073 2113 2.224843 GGGATGCACATCATGGATGGTA 60.225 50.000 12.43 0.82 43.60 3.25
2620 3799 2.834638 ATGGAGAAATTGGTGGGAGG 57.165 50.000 0.00 0.00 0.00 4.30
2621 3800 0.704076 TGGAGAAATTGGTGGGAGGG 59.296 55.000 0.00 0.00 0.00 4.30
2622 3801 0.033109 GGAGAAATTGGTGGGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
2623 3802 0.999712 GAGAAATTGGTGGGAGGGGA 59.000 55.000 0.00 0.00 0.00 4.81
2624 3803 1.002857 AGAAATTGGTGGGAGGGGAG 58.997 55.000 0.00 0.00 0.00 4.30
2625 3804 0.684479 GAAATTGGTGGGAGGGGAGC 60.684 60.000 0.00 0.00 0.00 4.70
2626 3805 1.442886 AAATTGGTGGGAGGGGAGCA 61.443 55.000 0.00 0.00 0.00 4.26
2627 3806 2.155197 AATTGGTGGGAGGGGAGCAC 62.155 60.000 0.00 0.00 0.00 4.40
2628 3807 4.590553 TGGTGGGAGGGGAGCACA 62.591 66.667 0.00 0.00 0.00 4.57
2629 3808 3.017581 GGTGGGAGGGGAGCACAT 61.018 66.667 0.00 0.00 0.00 3.21
2630 3809 1.692749 GGTGGGAGGGGAGCACATA 60.693 63.158 0.00 0.00 0.00 2.29
2631 3810 1.527370 GTGGGAGGGGAGCACATAC 59.473 63.158 0.00 0.00 0.00 2.39
2632 3811 2.063979 TGGGAGGGGAGCACATACG 61.064 63.158 0.00 0.00 0.00 3.06
2633 3812 1.760875 GGGAGGGGAGCACATACGA 60.761 63.158 0.00 0.00 0.00 3.43
2634 3813 1.742768 GGAGGGGAGCACATACGAG 59.257 63.158 0.00 0.00 0.00 4.18
2635 3814 1.742768 GAGGGGAGCACATACGAGG 59.257 63.158 0.00 0.00 0.00 4.63
2636 3815 1.749334 GAGGGGAGCACATACGAGGG 61.749 65.000 0.00 0.00 0.00 4.30
2637 3816 2.808206 GGGGAGCACATACGAGGGG 61.808 68.421 0.00 0.00 0.00 4.79
2638 3817 1.760875 GGGAGCACATACGAGGGGA 60.761 63.158 0.00 0.00 0.00 4.81
2639 3818 1.742768 GGAGCACATACGAGGGGAG 59.257 63.158 0.00 0.00 0.00 4.30
2677 3856 2.695585 GAGGGGAGGTCTAACCATGAT 58.304 52.381 0.00 0.00 41.95 2.45
2681 3860 2.771943 GGGAGGTCTAACCATGATGACA 59.228 50.000 0.00 0.00 41.95 3.58
2746 4231 0.603975 GCAGAAAGCCGGACTTCTGT 60.604 55.000 30.85 12.19 37.75 3.41
2790 4275 6.925165 ACAGTTGAATTTGCTTGTATTTCTGG 59.075 34.615 0.00 0.00 0.00 3.86
2989 4474 7.894708 TGCCAATTTTGATCTGAAATAACTCA 58.105 30.769 7.68 3.44 0.00 3.41
3037 4522 7.177568 GTGTGGATATCTACTCCATGTCTACAT 59.822 40.741 18.72 0.00 44.34 2.29
3118 4603 1.867363 AGGTGAGAGGTGGTATGTCC 58.133 55.000 0.00 0.00 0.00 4.02
3119 4604 1.362932 AGGTGAGAGGTGGTATGTCCT 59.637 52.381 0.00 0.00 37.07 3.85
3120 4605 2.188817 GGTGAGAGGTGGTATGTCCTT 58.811 52.381 0.00 0.00 37.07 3.36
3121 4606 3.012502 AGGTGAGAGGTGGTATGTCCTTA 59.987 47.826 0.00 0.00 37.07 2.69
3122 4607 3.773119 GGTGAGAGGTGGTATGTCCTTAA 59.227 47.826 0.00 0.00 37.07 1.85
3123 4608 4.141914 GGTGAGAGGTGGTATGTCCTTAAG 60.142 50.000 0.00 0.00 37.07 1.85
3124 4609 4.466726 GTGAGAGGTGGTATGTCCTTAAGT 59.533 45.833 0.97 0.00 37.07 2.24
3125 4610 5.046520 GTGAGAGGTGGTATGTCCTTAAGTT 60.047 44.000 0.97 0.00 37.07 2.66
3126 4611 5.046591 TGAGAGGTGGTATGTCCTTAAGTTG 60.047 44.000 0.97 0.00 37.07 3.16
3127 4612 3.939592 GAGGTGGTATGTCCTTAAGTTGC 59.060 47.826 0.97 0.00 37.07 4.17
3148 4643 8.534496 AGTTGCCTTAGATGCTTAAAAATCATT 58.466 29.630 0.00 0.00 0.00 2.57
3165 4660 9.480053 AAAAATCATTGTGGACAAGAACATAAG 57.520 29.630 0.00 0.00 39.47 1.73
3341 4836 7.434492 CGCTAGAACCTTATTTCCTATCAAGA 58.566 38.462 0.00 0.00 0.00 3.02
3346 4841 8.049721 AGAACCTTATTTCCTATCAAGACCTTG 58.950 37.037 3.47 3.47 41.71 3.61
3387 4882 1.147153 GCTGCTCACTGGTATCCCC 59.853 63.158 0.00 0.00 0.00 4.81
3507 5002 7.877097 ACAAACTAAATTAATTTGCCAGCATCA 59.123 29.630 21.19 0.00 36.91 3.07
3511 5006 9.452287 ACTAAATTAATTTGCCAGCATCAAAAT 57.548 25.926 21.19 0.00 37.04 1.82
3593 5088 2.018644 GCGGCTGGGATTTTCATCTCA 61.019 52.381 0.00 0.00 37.59 3.27
3605 5100 7.698130 GGGATTTTCATCTCACGTTAAAATCAG 59.302 37.037 16.30 0.00 43.44 2.90
3631 5126 1.000274 GCAGCCGGAAAACACAGATTT 60.000 47.619 5.05 0.00 0.00 2.17
3642 5137 4.739046 AACACAGATTTCAAAGAGCTCG 57.261 40.909 8.37 0.00 0.00 5.03
3673 5168 1.023513 GCAGGCGATCTTGAGCTTGT 61.024 55.000 4.77 0.00 41.63 3.16
3753 5248 0.108945 GGCTGAAGCTTGCAACCATC 60.109 55.000 2.10 0.00 41.70 3.51
3781 5276 0.121197 TGGATTTGAGAGGGAGGGGT 59.879 55.000 0.00 0.00 0.00 4.95
3809 5305 1.842562 CATTGTGGAGGTGAGGGAGAT 59.157 52.381 0.00 0.00 0.00 2.75
3907 5403 1.975407 CAGGCCAGGCTTGTTGGAG 60.975 63.158 15.60 0.00 37.96 3.86
3997 5493 3.428725 GCAGTGACATGATCGTCTCTCTT 60.429 47.826 0.00 0.00 37.58 2.85
4077 5573 6.267496 ACTGTACTTTTGCAACTGAGTTTT 57.733 33.333 12.79 0.00 0.00 2.43
4105 5601 7.889873 AGAATACTGCTACTAAGATGAGTGT 57.110 36.000 0.00 0.00 0.00 3.55
4106 5602 8.299990 AGAATACTGCTACTAAGATGAGTGTT 57.700 34.615 0.00 0.00 0.00 3.32
4169 5665 6.420913 TTGAAGGTAGCTTGTTCTACTTCT 57.579 37.500 12.82 0.00 39.05 2.85
4305 5801 0.690411 CATGGGAGAGCCTGGAGTCT 60.690 60.000 0.00 0.00 0.00 3.24
4653 6149 2.200373 TTGGGAGACTAAAGGCTTGC 57.800 50.000 0.00 0.00 0.00 4.01
4659 6155 2.744741 GAGACTAAAGGCTTGCTGGTTC 59.255 50.000 0.00 0.00 0.00 3.62
5070 6569 4.507756 TGATCTGTCAACACTGAAACTTCG 59.492 41.667 0.00 0.00 34.45 3.79
5084 6583 6.691388 ACTGAAACTTCGCACTTGTTAATTTC 59.309 34.615 0.00 0.00 0.00 2.17
5263 7001 0.036388 GTGCTGGTTTGATCGGAGGA 60.036 55.000 0.00 0.00 0.00 3.71
5438 7176 2.859165 TCTCTGGCAAGGTAAAGTGG 57.141 50.000 0.00 0.00 0.00 4.00
5518 7256 1.408969 TGGGTTTCTGGCTTTGTTCC 58.591 50.000 0.00 0.00 0.00 3.62
5526 7264 2.819608 TCTGGCTTTGTTCCTTATGTGC 59.180 45.455 0.00 0.00 0.00 4.57
5567 7305 4.632251 TCTCGTGATGTCTAGACAGTCTTC 59.368 45.833 28.29 20.99 45.48 2.87
5833 7571 5.725110 TGCTCTTTCTCTCGATTATTTGC 57.275 39.130 0.00 0.00 0.00 3.68
5881 7619 2.502130 GGAGCTTTAGCCTGAGTAGGTT 59.498 50.000 0.00 0.00 46.41 3.50
5942 7680 6.897413 ACACCATTTAAGGCTCCTGAATAATT 59.103 34.615 0.00 0.00 0.00 1.40
6041 7779 5.736040 GCATCAGCGCATATAATTTGTTC 57.264 39.130 11.47 0.00 0.00 3.18
6134 7875 4.095782 GTGCTCAACAAGGTCAGTTAACAA 59.904 41.667 8.61 0.00 0.00 2.83
6142 7883 7.933215 ACAAGGTCAGTTAACAAAACTTAGT 57.067 32.000 8.61 7.55 0.00 2.24
6147 7888 8.211629 AGGTCAGTTAACAAAACTTAGTGATCT 58.788 33.333 8.61 2.25 0.00 2.75
6214 7960 4.911514 ACTTGTCACAACATTTGGTACC 57.088 40.909 4.43 4.43 34.73 3.34
6363 8118 4.946646 ACTTGACATTTATGGGATTGGGT 58.053 39.130 0.00 0.00 0.00 4.51
6375 8130 2.042569 GGGATTGGGTAACTTCTTGGGT 59.957 50.000 0.00 0.00 0.00 4.51
6419 8174 4.670896 TCTCATACATGCAATCTTCGGA 57.329 40.909 0.00 0.00 0.00 4.55
6429 8184 0.253327 AATCTTCGGAGAAGTGCCCC 59.747 55.000 0.00 0.00 45.90 5.80
6431 8186 2.203938 TTCGGAGAAGTGCCCCCT 60.204 61.111 0.00 0.00 45.90 4.79
6432 8187 1.842381 CTTCGGAGAAGTGCCCCCTT 61.842 60.000 1.88 0.00 45.90 3.95
6433 8188 1.838073 TTCGGAGAAGTGCCCCCTTC 61.838 60.000 0.00 0.00 45.90 3.46
6434 8189 2.592993 CGGAGAAGTGCCCCCTTCA 61.593 63.158 9.64 0.00 42.68 3.02
6435 8190 1.767692 GGAGAAGTGCCCCCTTCAA 59.232 57.895 9.64 0.00 42.68 2.69
6436 8191 0.332972 GGAGAAGTGCCCCCTTCAAT 59.667 55.000 9.64 0.00 42.68 2.57
6437 8192 1.683319 GGAGAAGTGCCCCCTTCAATC 60.683 57.143 9.64 1.53 42.68 2.67
6438 8193 1.004745 GAGAAGTGCCCCCTTCAATCA 59.995 52.381 9.64 0.00 42.68 2.57
6439 8194 1.642762 AGAAGTGCCCCCTTCAATCAT 59.357 47.619 9.64 0.00 42.68 2.45
6440 8195 2.027385 GAAGTGCCCCCTTCAATCATC 58.973 52.381 3.72 0.00 40.46 2.92
6441 8196 0.107017 AGTGCCCCCTTCAATCATCG 60.107 55.000 0.00 0.00 0.00 3.84
6442 8197 0.107214 GTGCCCCCTTCAATCATCGA 60.107 55.000 0.00 0.00 0.00 3.59
6443 8198 0.846015 TGCCCCCTTCAATCATCGAT 59.154 50.000 0.00 0.00 0.00 3.59
6444 8199 1.242076 GCCCCCTTCAATCATCGATG 58.758 55.000 19.61 19.61 0.00 3.84
6445 8200 1.901591 CCCCCTTCAATCATCGATGG 58.098 55.000 24.61 9.54 0.00 3.51
6446 8201 1.546323 CCCCCTTCAATCATCGATGGG 60.546 57.143 24.61 15.64 44.05 4.00
6447 8202 1.421268 CCCCTTCAATCATCGATGGGA 59.579 52.381 24.61 16.48 46.21 4.37
6448 8203 2.551721 CCCCTTCAATCATCGATGGGAG 60.552 54.545 24.61 12.72 46.21 4.30
6449 8204 2.551721 CCCTTCAATCATCGATGGGAGG 60.552 54.545 24.61 20.09 46.21 4.30
6450 8205 2.551721 CCTTCAATCATCGATGGGAGGG 60.552 54.545 24.61 22.14 0.00 4.30
6451 8206 1.059098 TCAATCATCGATGGGAGGGG 58.941 55.000 24.61 9.29 0.00 4.79
6452 8207 0.767375 CAATCATCGATGGGAGGGGT 59.233 55.000 24.61 0.68 0.00 4.95
6453 8208 0.767375 AATCATCGATGGGAGGGGTG 59.233 55.000 24.61 0.00 0.00 4.61
6454 8209 1.772819 ATCATCGATGGGAGGGGTGC 61.773 60.000 24.61 0.00 0.00 5.01
6455 8210 3.171388 ATCGATGGGAGGGGTGCC 61.171 66.667 0.00 0.00 0.00 5.01
6456 8211 3.721172 ATCGATGGGAGGGGTGCCT 62.721 63.158 0.00 0.00 0.00 4.75
6457 8212 4.181010 CGATGGGAGGGGTGCCTG 62.181 72.222 0.00 0.00 0.00 4.85
6458 8213 2.692368 GATGGGAGGGGTGCCTGA 60.692 66.667 0.00 0.00 0.00 3.86
6459 8214 2.045132 ATGGGAGGGGTGCCTGAT 59.955 61.111 0.00 0.00 0.00 2.90
6460 8215 0.768221 GATGGGAGGGGTGCCTGATA 60.768 60.000 0.00 0.00 0.00 2.15
6461 8216 0.328450 ATGGGAGGGGTGCCTGATAA 60.328 55.000 0.00 0.00 0.00 1.75
6462 8217 0.328450 TGGGAGGGGTGCCTGATAAT 60.328 55.000 0.00 0.00 0.00 1.28
6463 8218 0.853530 GGGAGGGGTGCCTGATAATT 59.146 55.000 0.00 0.00 0.00 1.40
6464 8219 1.479389 GGGAGGGGTGCCTGATAATTG 60.479 57.143 0.00 0.00 0.00 2.32
6465 8220 1.479389 GGAGGGGTGCCTGATAATTGG 60.479 57.143 0.00 0.00 0.00 3.16
6466 8221 1.494721 GAGGGGTGCCTGATAATTGGA 59.505 52.381 0.00 0.00 0.00 3.53
6467 8222 1.929494 AGGGGTGCCTGATAATTGGAA 59.071 47.619 0.00 0.00 0.00 3.53
6468 8223 2.091665 AGGGGTGCCTGATAATTGGAAG 60.092 50.000 0.00 0.00 0.00 3.46
6469 8224 2.310538 GGGTGCCTGATAATTGGAAGG 58.689 52.381 0.00 0.00 0.00 3.46
6470 8225 2.310538 GGTGCCTGATAATTGGAAGGG 58.689 52.381 4.80 0.00 0.00 3.95
6488 8243 1.619704 GGGGTGCTTCTAAGGGCATTT 60.620 52.381 0.00 0.00 40.66 2.32
6494 8249 3.119637 TGCTTCTAAGGGCATTTTAACGC 60.120 43.478 0.00 0.00 33.23 4.84
6499 8254 5.493809 TCTAAGGGCATTTTAACGCTAACT 58.506 37.500 0.00 0.00 0.00 2.24
6546 8301 2.446994 ACAGGGGTCCGTGGACAA 60.447 61.111 20.02 0.00 46.20 3.18
6577 8381 2.709934 AGGCTGTCATCCAATGCTATCT 59.290 45.455 0.00 0.00 0.00 1.98
6608 8412 6.292923 TGTCCGAATGTATAGGGTAATTTGG 58.707 40.000 0.00 0.00 35.63 3.28
6614 8418 8.227791 CGAATGTATAGGGTAATTTGGAATTCG 58.772 37.037 0.00 0.00 36.64 3.34
6636 8440 9.764363 ATTCGAATAAAAGTCTGATACATAGCA 57.236 29.630 9.39 0.00 0.00 3.49
6638 8442 8.194769 TCGAATAAAAGTCTGATACATAGCACA 58.805 33.333 0.00 0.00 0.00 4.57
6639 8443 8.269424 CGAATAAAAGTCTGATACATAGCACAC 58.731 37.037 0.00 0.00 0.00 3.82
6652 8456 2.680913 GCACACGCTCCATCACACC 61.681 63.158 0.00 0.00 34.30 4.16
6655 8459 2.046892 ACGCTCCATCACACCAGC 60.047 61.111 0.00 0.00 0.00 4.85
6672 8476 2.528743 GCGTCAGATCACATGCCCG 61.529 63.158 0.00 0.00 0.00 6.13
6717 8521 4.736126 ATGCTTAGGTTTAAACATGCCC 57.264 40.909 19.57 2.27 27.39 5.36
6736 8540 4.576053 TGCCCGATGACAAAAGAATATCTG 59.424 41.667 0.00 0.00 0.00 2.90
6739 8543 4.576053 CCGATGACAAAAGAATATCTGCCA 59.424 41.667 0.00 0.00 0.00 4.92
6741 8545 5.525012 CGATGACAAAAGAATATCTGCCAGA 59.475 40.000 0.00 0.00 0.00 3.86
6755 8559 3.888323 TCTGCCAGATAGTTTGTGCAAAA 59.112 39.130 0.00 0.00 31.33 2.44
6777 8583 3.643159 AAAGAGATGTTTTTGACCGGC 57.357 42.857 0.00 0.00 0.00 6.13
6778 8584 2.270352 AGAGATGTTTTTGACCGGCA 57.730 45.000 0.00 0.00 0.00 5.69
6779 8585 2.582052 AGAGATGTTTTTGACCGGCAA 58.418 42.857 0.00 3.94 33.88 4.52
6780 8586 3.157087 AGAGATGTTTTTGACCGGCAAT 58.843 40.909 0.00 0.00 36.15 3.56
6781 8587 3.191371 AGAGATGTTTTTGACCGGCAATC 59.809 43.478 0.00 1.36 36.15 2.67
6782 8588 2.231235 AGATGTTTTTGACCGGCAATCC 59.769 45.455 0.00 0.00 36.15 3.01
6783 8589 1.403814 TGTTTTTGACCGGCAATCCA 58.596 45.000 0.00 1.76 36.15 3.41
6784 8590 1.757118 TGTTTTTGACCGGCAATCCAA 59.243 42.857 0.00 0.00 36.15 3.53
6785 8591 2.131972 GTTTTTGACCGGCAATCCAAC 58.868 47.619 0.00 7.13 36.15 3.77
6786 8592 0.676736 TTTTGACCGGCAATCCAACC 59.323 50.000 0.00 0.00 36.15 3.77
6787 8593 1.182385 TTTGACCGGCAATCCAACCC 61.182 55.000 0.00 0.00 36.15 4.11
6788 8594 2.075355 TTGACCGGCAATCCAACCCT 62.075 55.000 0.00 0.00 0.00 4.34
6789 8595 1.749258 GACCGGCAATCCAACCCTC 60.749 63.158 0.00 0.00 0.00 4.30
6790 8596 2.440247 CCGGCAATCCAACCCTCC 60.440 66.667 0.00 0.00 0.00 4.30
6791 8597 2.677228 CGGCAATCCAACCCTCCT 59.323 61.111 0.00 0.00 0.00 3.69
6792 8598 1.452108 CGGCAATCCAACCCTCCTC 60.452 63.158 0.00 0.00 0.00 3.71
6793 8599 1.076705 GGCAATCCAACCCTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
6794 8600 1.691219 GCAATCCAACCCTCCTCCA 59.309 57.895 0.00 0.00 0.00 3.86
6795 8601 0.681243 GCAATCCAACCCTCCTCCAC 60.681 60.000 0.00 0.00 0.00 4.02
6796 8602 0.392998 CAATCCAACCCTCCTCCACG 60.393 60.000 0.00 0.00 0.00 4.94
6797 8603 2.198304 AATCCAACCCTCCTCCACGC 62.198 60.000 0.00 0.00 0.00 5.34
6798 8604 3.322466 CCAACCCTCCTCCACGCT 61.322 66.667 0.00 0.00 0.00 5.07
6799 8605 2.266055 CAACCCTCCTCCACGCTC 59.734 66.667 0.00 0.00 0.00 5.03
6800 8606 2.203788 AACCCTCCTCCACGCTCA 60.204 61.111 0.00 0.00 0.00 4.26
6801 8607 1.841556 AACCCTCCTCCACGCTCAA 60.842 57.895 0.00 0.00 0.00 3.02
6802 8608 1.831652 AACCCTCCTCCACGCTCAAG 61.832 60.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.489329 AGATGGCGGTTCATGAAACAAG 59.511 45.455 22.83 8.99 39.81 3.16
1 2 2.513753 AGATGGCGGTTCATGAAACAA 58.486 42.857 22.83 8.48 39.81 2.83
2 3 2.198827 AGATGGCGGTTCATGAAACA 57.801 45.000 22.83 13.60 39.81 2.83
3 4 2.487762 TGAAGATGGCGGTTCATGAAAC 59.512 45.455 13.77 13.77 37.12 2.78
4 5 2.789213 TGAAGATGGCGGTTCATGAAA 58.211 42.857 10.35 0.00 0.00 2.69
5 6 2.487762 GTTGAAGATGGCGGTTCATGAA 59.512 45.455 3.38 3.38 32.79 2.57
6 7 2.083774 GTTGAAGATGGCGGTTCATGA 58.916 47.619 0.00 0.00 32.79 3.07
7 8 1.811965 TGTTGAAGATGGCGGTTCATG 59.188 47.619 0.00 0.00 32.79 3.07
8 9 2.198827 TGTTGAAGATGGCGGTTCAT 57.801 45.000 0.00 0.00 32.79 2.57
9 10 2.083774 GATGTTGAAGATGGCGGTTCA 58.916 47.619 0.00 0.00 0.00 3.18
10 11 2.359900 AGATGTTGAAGATGGCGGTTC 58.640 47.619 0.00 0.00 0.00 3.62
11 12 2.496899 AGATGTTGAAGATGGCGGTT 57.503 45.000 0.00 0.00 0.00 4.44
12 13 2.026822 AGAAGATGTTGAAGATGGCGGT 60.027 45.455 0.00 0.00 0.00 5.68
13 14 2.636830 AGAAGATGTTGAAGATGGCGG 58.363 47.619 0.00 0.00 0.00 6.13
14 15 3.686241 TCAAGAAGATGTTGAAGATGGCG 59.314 43.478 0.00 0.00 30.89 5.69
15 16 4.940046 TCTCAAGAAGATGTTGAAGATGGC 59.060 41.667 0.00 0.00 33.56 4.40
16 17 6.171921 AGTCTCAAGAAGATGTTGAAGATGG 58.828 40.000 0.00 0.00 36.11 3.51
17 18 7.603404 AGAAGTCTCAAGAAGATGTTGAAGATG 59.397 37.037 0.00 0.00 36.11 2.90
18 19 7.678837 AGAAGTCTCAAGAAGATGTTGAAGAT 58.321 34.615 0.00 0.00 36.11 2.40
19 20 7.060383 AGAAGTCTCAAGAAGATGTTGAAGA 57.940 36.000 0.00 0.00 36.11 2.87
20 21 7.350110 GAGAAGTCTCAAGAAGATGTTGAAG 57.650 40.000 3.37 0.00 42.42 3.02
42 43 3.189618 TCACTGGCTGCTCATAATGAG 57.810 47.619 0.00 0.00 46.90 2.90
43 44 3.851458 ATCACTGGCTGCTCATAATGA 57.149 42.857 0.00 1.82 0.00 2.57
44 45 5.121925 GTCATATCACTGGCTGCTCATAATG 59.878 44.000 0.00 0.00 0.00 1.90
45 46 5.243981 GTCATATCACTGGCTGCTCATAAT 58.756 41.667 0.00 0.00 0.00 1.28
46 47 4.503817 GGTCATATCACTGGCTGCTCATAA 60.504 45.833 0.00 0.00 0.00 1.90
47 48 3.007290 GGTCATATCACTGGCTGCTCATA 59.993 47.826 0.00 0.00 0.00 2.15
48 49 2.224475 GGTCATATCACTGGCTGCTCAT 60.224 50.000 0.00 0.00 0.00 2.90
49 50 1.139654 GGTCATATCACTGGCTGCTCA 59.860 52.381 0.00 0.00 0.00 4.26
50 51 1.542108 GGGTCATATCACTGGCTGCTC 60.542 57.143 0.00 0.00 0.00 4.26
51 52 0.471617 GGGTCATATCACTGGCTGCT 59.528 55.000 0.00 0.00 0.00 4.24
52 53 0.882042 CGGGTCATATCACTGGCTGC 60.882 60.000 0.00 0.00 0.00 5.25
53 54 0.250038 CCGGGTCATATCACTGGCTG 60.250 60.000 0.00 0.00 0.00 4.85
54 55 2.044806 GCCGGGTCATATCACTGGCT 62.045 60.000 2.18 0.00 35.87 4.75
55 56 1.598130 GCCGGGTCATATCACTGGC 60.598 63.158 2.18 0.00 32.93 4.85
56 57 1.071471 GGCCGGGTCATATCACTGG 59.929 63.158 2.18 0.00 0.00 4.00
57 58 1.071471 GGGCCGGGTCATATCACTG 59.929 63.158 2.18 0.00 0.00 3.66
58 59 2.147387 GGGGCCGGGTCATATCACT 61.147 63.158 2.18 0.00 0.00 3.41
59 60 2.113243 GAGGGGCCGGGTCATATCAC 62.113 65.000 2.18 0.00 0.00 3.06
60 61 1.841556 GAGGGGCCGGGTCATATCA 60.842 63.158 2.18 0.00 0.00 2.15
61 62 2.593956 GGAGGGGCCGGGTCATATC 61.594 68.421 2.18 0.00 0.00 1.63
62 63 2.529389 GGAGGGGCCGGGTCATAT 60.529 66.667 2.18 0.00 0.00 1.78
63 64 3.774336 AGGAGGGGCCGGGTCATA 61.774 66.667 2.18 0.00 43.43 2.15
75 76 1.709994 GGTATGCCCCTTCCAGGAGG 61.710 65.000 0.00 0.00 37.67 4.30
76 77 1.839894 GGTATGCCCCTTCCAGGAG 59.160 63.158 0.00 0.00 37.67 3.69
77 78 4.083155 GGTATGCCCCTTCCAGGA 57.917 61.111 0.00 0.00 37.67 3.86
87 88 3.412386 GGACATGACTATTGGGTATGCC 58.588 50.000 0.00 0.00 0.00 4.40
88 89 3.412386 GGGACATGACTATTGGGTATGC 58.588 50.000 0.00 0.00 0.00 3.14
89 90 3.394274 TGGGGACATGACTATTGGGTATG 59.606 47.826 0.00 0.00 33.40 2.39
90 91 3.675613 TGGGGACATGACTATTGGGTAT 58.324 45.455 0.00 0.00 33.40 2.73
91 92 3.138123 TGGGGACATGACTATTGGGTA 57.862 47.619 0.00 0.00 33.40 3.69
92 93 1.979809 TGGGGACATGACTATTGGGT 58.020 50.000 0.00 0.00 33.40 4.51
93 94 2.025416 TGTTGGGGACATGACTATTGGG 60.025 50.000 0.00 0.00 42.32 4.12
94 95 3.364460 TGTTGGGGACATGACTATTGG 57.636 47.619 0.00 0.00 42.32 3.16
105 106 4.740822 AGCCGGCATGTTGGGGAC 62.741 66.667 31.54 0.00 0.00 4.46
106 107 4.424711 GAGCCGGCATGTTGGGGA 62.425 66.667 31.54 0.00 0.00 4.81
107 108 4.738998 TGAGCCGGCATGTTGGGG 62.739 66.667 31.54 0.00 0.00 4.96
108 109 3.136123 CTGAGCCGGCATGTTGGG 61.136 66.667 31.54 7.19 0.00 4.12
109 110 2.360350 ACTGAGCCGGCATGTTGG 60.360 61.111 31.54 14.20 0.00 3.77
110 111 0.957395 AAGACTGAGCCGGCATGTTG 60.957 55.000 31.54 15.75 0.00 3.33
111 112 0.250901 AAAGACTGAGCCGGCATGTT 60.251 50.000 31.54 12.77 0.00 2.71
112 113 0.674895 GAAAGACTGAGCCGGCATGT 60.675 55.000 31.54 23.16 0.00 3.21
113 114 1.699656 CGAAAGACTGAGCCGGCATG 61.700 60.000 31.54 19.90 0.00 4.06
114 115 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
115 116 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
116 117 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
117 118 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
118 119 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
119 120 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
120 121 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
121 122 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
122 123 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
123 124 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
124 125 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
125 126 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
126 127 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
127 128 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
128 129 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
129 130 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
130 131 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
131 132 2.511452 CCCCCTATGAGCACCTCCG 61.511 68.421 0.00 0.00 0.00 4.63
132 133 0.105142 TACCCCCTATGAGCACCTCC 60.105 60.000 0.00 0.00 0.00 4.30
133 134 1.343069 CTACCCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
134 135 0.104934 CCTACCCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
135 136 1.128188 CCCTACCCCCTATGAGCACC 61.128 65.000 0.00 0.00 0.00 5.01
136 137 0.400093 ACCCTACCCCCTATGAGCAC 60.400 60.000 0.00 0.00 0.00 4.40
137 138 0.399949 CACCCTACCCCCTATGAGCA 60.400 60.000 0.00 0.00 0.00 4.26
138 139 0.400093 ACACCCTACCCCCTATGAGC 60.400 60.000 0.00 0.00 0.00 4.26
139 140 1.424638 CACACCCTACCCCCTATGAG 58.575 60.000 0.00 0.00 0.00 2.90
140 141 0.693092 GCACACCCTACCCCCTATGA 60.693 60.000 0.00 0.00 0.00 2.15
141 142 1.837090 GCACACCCTACCCCCTATG 59.163 63.158 0.00 0.00 0.00 2.23
142 143 1.764854 CGCACACCCTACCCCCTAT 60.765 63.158 0.00 0.00 0.00 2.57
143 144 2.364579 CGCACACCCTACCCCCTA 60.365 66.667 0.00 0.00 0.00 3.53
144 145 4.651516 ACGCACACCCTACCCCCT 62.652 66.667 0.00 0.00 0.00 4.79
145 146 4.404098 CACGCACACCCTACCCCC 62.404 72.222 0.00 0.00 0.00 5.40
146 147 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
147 148 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
148 149 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
149 150 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
150 151 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
153 154 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
154 155 2.304516 AAGAACGCACACACGCACAC 62.305 55.000 0.00 0.00 36.19 3.82
155 156 0.806492 TAAGAACGCACACACGCACA 60.806 50.000 0.00 0.00 36.19 4.57
156 157 0.111266 CTAAGAACGCACACACGCAC 60.111 55.000 0.00 0.00 36.19 5.34
157 158 1.218875 CCTAAGAACGCACACACGCA 61.219 55.000 0.00 0.00 36.19 5.24
158 159 1.491563 CCTAAGAACGCACACACGC 59.508 57.895 0.00 0.00 36.19 5.34
159 160 1.289109 CCCCTAAGAACGCACACACG 61.289 60.000 0.00 0.00 39.50 4.49
160 161 0.250166 ACCCCTAAGAACGCACACAC 60.250 55.000 0.00 0.00 0.00 3.82
161 162 0.250124 CACCCCTAAGAACGCACACA 60.250 55.000 0.00 0.00 0.00 3.72
162 163 0.034337 TCACCCCTAAGAACGCACAC 59.966 55.000 0.00 0.00 0.00 3.82
163 164 0.320374 CTCACCCCTAAGAACGCACA 59.680 55.000 0.00 0.00 0.00 4.57
164 165 0.320697 ACTCACCCCTAAGAACGCAC 59.679 55.000 0.00 0.00 0.00 5.34
165 166 0.320374 CACTCACCCCTAAGAACGCA 59.680 55.000 0.00 0.00 0.00 5.24
166 167 0.320697 ACACTCACCCCTAAGAACGC 59.679 55.000 0.00 0.00 0.00 4.84
167 168 3.782046 CATACACTCACCCCTAAGAACG 58.218 50.000 0.00 0.00 0.00 3.95
168 169 3.055385 TGCATACACTCACCCCTAAGAAC 60.055 47.826 0.00 0.00 0.00 3.01
169 170 3.055385 GTGCATACACTCACCCCTAAGAA 60.055 47.826 0.00 0.00 43.85 2.52
170 171 2.500098 GTGCATACACTCACCCCTAAGA 59.500 50.000 0.00 0.00 43.85 2.10
171 172 2.906354 GTGCATACACTCACCCCTAAG 58.094 52.381 0.00 0.00 43.85 2.18
177 178 8.945979 GCTCATATACATGTGCATACACTCACC 61.946 44.444 9.11 0.00 46.27 4.02
178 179 6.128715 GCTCATATACATGTGCATACACTCAC 60.129 42.308 9.11 0.00 46.27 3.51
179 180 5.928264 GCTCATATACATGTGCATACACTCA 59.072 40.000 9.11 0.00 46.27 3.41
180 181 6.400579 GCTCATATACATGTGCATACACTC 57.599 41.667 9.11 0.00 46.27 3.51
188 189 4.333649 ACACAAGTGCTCATATACATGTGC 59.666 41.667 9.11 2.26 45.31 4.57
189 190 5.814188 AGACACAAGTGCTCATATACATGTG 59.186 40.000 9.11 9.18 46.24 3.21
190 191 5.814188 CAGACACAAGTGCTCATATACATGT 59.186 40.000 2.69 2.69 33.57 3.21
191 192 5.814188 ACAGACACAAGTGCTCATATACATG 59.186 40.000 0.00 0.00 0.00 3.21
192 193 5.982356 ACAGACACAAGTGCTCATATACAT 58.018 37.500 0.00 0.00 0.00 2.29
193 194 5.405935 ACAGACACAAGTGCTCATATACA 57.594 39.130 0.00 0.00 0.00 2.29
194 195 8.331022 CAAATACAGACACAAGTGCTCATATAC 58.669 37.037 0.00 0.00 0.00 1.47
195 196 8.257306 TCAAATACAGACACAAGTGCTCATATA 58.743 33.333 0.00 0.00 0.00 0.86
196 197 7.105588 TCAAATACAGACACAAGTGCTCATAT 58.894 34.615 0.00 0.00 0.00 1.78
197 198 6.463360 TCAAATACAGACACAAGTGCTCATA 58.537 36.000 0.00 0.00 0.00 2.15
198 199 5.308014 TCAAATACAGACACAAGTGCTCAT 58.692 37.500 0.00 0.00 0.00 2.90
199 200 4.702831 TCAAATACAGACACAAGTGCTCA 58.297 39.130 0.00 0.00 0.00 4.26
200 201 5.180117 ACATCAAATACAGACACAAGTGCTC 59.820 40.000 0.00 0.00 0.00 4.26
201 202 5.065914 ACATCAAATACAGACACAAGTGCT 58.934 37.500 0.00 0.00 0.00 4.40
202 203 5.362556 ACATCAAATACAGACACAAGTGC 57.637 39.130 0.00 0.00 0.00 4.40
203 204 9.729023 TTTTAACATCAAATACAGACACAAGTG 57.271 29.630 0.00 0.00 0.00 3.16
204 205 9.950680 CTTTTAACATCAAATACAGACACAAGT 57.049 29.630 0.00 0.00 0.00 3.16
205 206 9.398170 CCTTTTAACATCAAATACAGACACAAG 57.602 33.333 0.00 0.00 0.00 3.16
206 207 9.126151 TCCTTTTAACATCAAATACAGACACAA 57.874 29.630 0.00 0.00 0.00 3.33
207 208 8.684386 TCCTTTTAACATCAAATACAGACACA 57.316 30.769 0.00 0.00 0.00 3.72
208 209 9.959749 TTTCCTTTTAACATCAAATACAGACAC 57.040 29.630 0.00 0.00 0.00 3.67
235 236 3.636764 CACTTAGTCCTGCCAAGGTTTTT 59.363 43.478 0.00 0.00 44.82 1.94
236 237 3.222603 CACTTAGTCCTGCCAAGGTTTT 58.777 45.455 0.00 0.00 44.82 2.43
237 238 2.489073 CCACTTAGTCCTGCCAAGGTTT 60.489 50.000 0.00 0.00 44.82 3.27
238 239 1.073923 CCACTTAGTCCTGCCAAGGTT 59.926 52.381 0.00 0.00 44.82 3.50
239 240 0.693049 CCACTTAGTCCTGCCAAGGT 59.307 55.000 0.00 0.00 44.82 3.50
240 241 0.035056 CCCACTTAGTCCTGCCAAGG 60.035 60.000 0.00 0.00 46.06 3.61
241 242 0.678048 GCCCACTTAGTCCTGCCAAG 60.678 60.000 0.00 0.00 0.00 3.61
242 243 1.133809 AGCCCACTTAGTCCTGCCAA 61.134 55.000 0.00 0.00 0.00 4.52
243 244 1.538876 AGCCCACTTAGTCCTGCCA 60.539 57.895 0.00 0.00 0.00 4.92
244 245 1.078143 CAGCCCACTTAGTCCTGCC 60.078 63.158 0.00 0.00 0.00 4.85
245 246 0.674895 CACAGCCCACTTAGTCCTGC 60.675 60.000 4.72 0.00 0.00 4.85
246 247 0.036010 CCACAGCCCACTTAGTCCTG 60.036 60.000 3.62 3.62 0.00 3.86
250 251 2.231380 CCCCCACAGCCCACTTAGT 61.231 63.158 0.00 0.00 0.00 2.24
266 267 2.130272 GGACTGAAAATGGGAGTCCC 57.870 55.000 22.54 22.54 46.99 4.46
276 278 2.158475 AGGTTGCAGATGGGACTGAAAA 60.158 45.455 0.00 0.00 37.20 2.29
277 279 1.425066 AGGTTGCAGATGGGACTGAAA 59.575 47.619 0.00 0.00 39.94 2.69
285 287 1.741706 GTGACATCAGGTTGCAGATGG 59.258 52.381 15.66 1.72 44.50 3.51
288 290 1.059098 AGGTGACATCAGGTTGCAGA 58.941 50.000 0.00 0.00 0.00 4.26
289 291 1.538512 CAAGGTGACATCAGGTTGCAG 59.461 52.381 0.00 0.00 0.00 4.41
294 296 0.250901 GGCACAAGGTGACATCAGGT 60.251 55.000 0.00 0.00 41.94 4.00
296 298 0.037303 AGGGCACAAGGTGACATCAG 59.963 55.000 4.40 0.00 44.59 2.90
297 299 0.478072 AAGGGCACAAGGTGACATCA 59.522 50.000 4.40 0.00 44.59 3.07
298 300 0.883833 CAAGGGCACAAGGTGACATC 59.116 55.000 4.40 0.00 44.59 3.06
299 301 0.540365 CCAAGGGCACAAGGTGACAT 60.540 55.000 4.40 0.00 44.59 3.06
300 302 1.152777 CCAAGGGCACAAGGTGACA 60.153 57.895 4.40 0.00 44.59 3.58
302 304 1.063070 TACCCAAGGGCACAAGGTGA 61.063 55.000 4.70 0.00 39.32 4.02
303 305 0.893727 GTACCCAAGGGCACAAGGTG 60.894 60.000 4.70 0.00 39.32 4.00
304 306 1.458927 GTACCCAAGGGCACAAGGT 59.541 57.895 4.70 0.00 39.32 3.50
305 307 1.304134 GGTACCCAAGGGCACAAGG 60.304 63.158 10.57 0.00 39.32 3.61
306 308 4.415783 GGTACCCAAGGGCACAAG 57.584 61.111 10.57 0.00 39.32 3.16
354 356 1.067060 GCGTTTCCTCAGCCAACTTTT 59.933 47.619 0.00 0.00 0.00 2.27
357 359 0.886490 CTGCGTTTCCTCAGCCAACT 60.886 55.000 0.00 0.00 0.00 3.16
359 361 0.884704 GTCTGCGTTTCCTCAGCCAA 60.885 55.000 0.00 0.00 0.00 4.52
361 363 2.035442 GGTCTGCGTTTCCTCAGCC 61.035 63.158 0.00 0.00 0.00 4.85
362 364 2.383527 CGGTCTGCGTTTCCTCAGC 61.384 63.158 0.00 0.00 0.00 4.26
363 365 1.006102 ACGGTCTGCGTTTCCTCAG 60.006 57.895 0.00 0.00 0.00 3.35
822 829 3.116531 GGTAGTGTCAACGGCGGC 61.117 66.667 13.24 0.00 0.00 6.53
823 830 2.433664 GGGTAGTGTCAACGGCGG 60.434 66.667 13.24 0.00 0.00 6.13
824 831 2.807895 CGGGTAGTGTCAACGGCG 60.808 66.667 4.80 4.80 0.00 6.46
825 832 3.116531 GCGGGTAGTGTCAACGGC 61.117 66.667 0.00 0.00 0.00 5.68
826 833 2.752322 TTCGCGGGTAGTGTCAACGG 62.752 60.000 6.13 0.00 0.00 4.44
827 834 0.734942 ATTCGCGGGTAGTGTCAACG 60.735 55.000 6.13 0.00 0.00 4.10
864 871 1.446272 GGAAAGCGACGGTGAGGAG 60.446 63.158 0.00 0.00 0.00 3.69
969 976 1.234821 GGATCGACCAACAAAGCACA 58.765 50.000 0.00 0.00 38.79 4.57
1007 1014 2.035632 AGACTAGGCAGAATAAGCGCT 58.964 47.619 2.64 2.64 0.00 5.92
1089 1096 6.180472 ACAACAATCAAACCTATACTCCAGG 58.820 40.000 0.00 0.00 39.25 4.45
1132 1139 3.473647 TGCCATGCCTCCTCTCCG 61.474 66.667 0.00 0.00 0.00 4.63
1475 1482 3.636764 AGGCCAACCACTAAAAACTTCTG 59.363 43.478 5.01 0.00 39.06 3.02
1480 1487 1.616865 GGGAGGCCAACCACTAAAAAC 59.383 52.381 18.41 0.00 39.06 2.43
1691 1706 5.750352 ACTCCCTCGGTTTCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
1705 1720 2.228925 GGGCTAGTTACTACTCCCTCG 58.771 57.143 14.25 0.00 36.13 4.63
1857 1872 8.718102 ATATAAGTACATGTCAGTGTTTCCAC 57.282 34.615 0.00 0.00 42.17 4.02
1988 2028 1.078759 CGTTGTTGCACCGCCAAAAA 61.079 50.000 0.00 0.00 0.00 1.94
2032 2072 2.249413 CTAGCCTCACCCTGCACCTG 62.249 65.000 0.00 0.00 0.00 4.00
2033 2073 1.992277 CTAGCCTCACCCTGCACCT 60.992 63.158 0.00 0.00 0.00 4.00
2034 2074 2.586792 CTAGCCTCACCCTGCACC 59.413 66.667 0.00 0.00 0.00 5.01
2035 2075 2.586792 CCTAGCCTCACCCTGCAC 59.413 66.667 0.00 0.00 0.00 4.57
2036 2076 2.688666 CCCTAGCCTCACCCTGCA 60.689 66.667 0.00 0.00 0.00 4.41
2037 2077 3.483869 CCCCTAGCCTCACCCTGC 61.484 72.222 0.00 0.00 0.00 4.85
2038 2078 1.074167 ATCCCCTAGCCTCACCCTG 60.074 63.158 0.00 0.00 0.00 4.45
2039 2079 1.074167 CATCCCCTAGCCTCACCCT 60.074 63.158 0.00 0.00 0.00 4.34
2040 2080 2.823758 GCATCCCCTAGCCTCACCC 61.824 68.421 0.00 0.00 0.00 4.61
2041 2081 2.072487 TGCATCCCCTAGCCTCACC 61.072 63.158 0.00 0.00 0.00 4.02
2042 2082 1.147153 GTGCATCCCCTAGCCTCAC 59.853 63.158 0.00 0.00 0.00 3.51
2043 2083 0.695462 ATGTGCATCCCCTAGCCTCA 60.695 55.000 0.00 0.00 0.00 3.86
2044 2084 0.036022 GATGTGCATCCCCTAGCCTC 59.964 60.000 0.00 0.00 31.76 4.70
2045 2085 0.695462 TGATGTGCATCCCCTAGCCT 60.695 55.000 9.39 0.00 37.02 4.58
2046 2086 0.403271 ATGATGTGCATCCCCTAGCC 59.597 55.000 9.39 0.00 37.02 3.93
2047 2087 1.531423 CATGATGTGCATCCCCTAGC 58.469 55.000 9.39 0.00 37.02 3.42
2048 2088 1.701292 TCCATGATGTGCATCCCCTAG 59.299 52.381 9.39 0.00 37.02 3.02
2049 2089 1.818419 TCCATGATGTGCATCCCCTA 58.182 50.000 9.39 0.00 37.02 3.53
2050 2090 1.155323 ATCCATGATGTGCATCCCCT 58.845 50.000 9.39 0.00 37.02 4.79
2051 2091 1.254026 CATCCATGATGTGCATCCCC 58.746 55.000 9.39 0.00 35.54 4.81
2052 2092 1.254026 CCATCCATGATGTGCATCCC 58.746 55.000 9.39 0.00 38.28 3.85
2053 2093 1.991121 ACCATCCATGATGTGCATCC 58.009 50.000 9.39 0.00 38.28 3.51
2523 3702 1.668047 CGTACGTTTCCTCTGTCCCAC 60.668 57.143 7.22 0.00 0.00 4.61
2620 3799 1.749334 CTCCCCTCGTATGTGCTCCC 61.749 65.000 0.00 0.00 0.00 4.30
2621 3800 1.742768 CTCCCCTCGTATGTGCTCC 59.257 63.158 0.00 0.00 0.00 4.70
2622 3801 1.742768 CCTCCCCTCGTATGTGCTC 59.257 63.158 0.00 0.00 0.00 4.26
2623 3802 1.762460 CCCTCCCCTCGTATGTGCT 60.762 63.158 0.00 0.00 0.00 4.40
2624 3803 2.808206 CCCCTCCCCTCGTATGTGC 61.808 68.421 0.00 0.00 0.00 4.57
2625 3804 1.075525 TCCCCTCCCCTCGTATGTG 60.076 63.158 0.00 0.00 0.00 3.21
2626 3805 1.233369 CTCCCCTCCCCTCGTATGT 59.767 63.158 0.00 0.00 0.00 2.29
2627 3806 2.210711 GCTCCCCTCCCCTCGTATG 61.211 68.421 0.00 0.00 0.00 2.39
2628 3807 2.201771 GCTCCCCTCCCCTCGTAT 59.798 66.667 0.00 0.00 0.00 3.06
2629 3808 3.352748 TGCTCCCCTCCCCTCGTA 61.353 66.667 0.00 0.00 0.00 3.43
2631 3810 2.946988 TATGTGCTCCCCTCCCCTCG 62.947 65.000 0.00 0.00 0.00 4.63
2632 3811 1.074471 TATGTGCTCCCCTCCCCTC 60.074 63.158 0.00 0.00 0.00 4.30
2633 3812 1.384643 GTATGTGCTCCCCTCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
2634 3813 2.808206 CGTATGTGCTCCCCTCCCC 61.808 68.421 0.00 0.00 0.00 4.81
2635 3814 1.749334 CTCGTATGTGCTCCCCTCCC 61.749 65.000 0.00 0.00 0.00 4.30
2636 3815 1.742768 CTCGTATGTGCTCCCCTCC 59.257 63.158 0.00 0.00 0.00 4.30
2637 3816 1.742768 CCTCGTATGTGCTCCCCTC 59.257 63.158 0.00 0.00 0.00 4.30
2638 3817 1.762460 CCCTCGTATGTGCTCCCCT 60.762 63.158 0.00 0.00 0.00 4.79
2639 3818 2.808206 CCCCTCGTATGTGCTCCCC 61.808 68.421 0.00 0.00 0.00 4.81
2677 3856 1.067142 GGTAGTCTGCCATCGTTGTCA 60.067 52.381 1.44 0.00 0.00 3.58
2681 3860 1.207329 GAAGGGTAGTCTGCCATCGTT 59.793 52.381 9.40 0.00 0.00 3.85
2746 4231 2.238521 GTGCCCCAAATTCTGAACAGA 58.761 47.619 0.00 0.00 35.27 3.41
2790 4275 3.449377 TCCAAAGTGAAACAGGGTTTTCC 59.551 43.478 0.00 0.00 41.43 3.13
3037 4522 7.984422 ACAGATACAACAGAATGAATGTCAA 57.016 32.000 0.00 0.00 39.69 3.18
3122 4607 8.071177 ATGATTTTTAAGCATCTAAGGCAACT 57.929 30.769 0.00 0.00 41.23 3.16
3123 4608 8.598075 CAATGATTTTTAAGCATCTAAGGCAAC 58.402 33.333 0.00 0.00 36.31 4.17
3124 4609 8.313292 ACAATGATTTTTAAGCATCTAAGGCAA 58.687 29.630 0.00 0.00 36.31 4.52
3125 4610 7.760794 CACAATGATTTTTAAGCATCTAAGGCA 59.239 33.333 0.00 0.00 36.31 4.75
3126 4611 7.223387 CCACAATGATTTTTAAGCATCTAAGGC 59.777 37.037 0.00 0.00 36.31 4.35
3127 4612 8.469200 TCCACAATGATTTTTAAGCATCTAAGG 58.531 33.333 0.00 0.00 36.31 2.69
3341 4836 2.362077 GTCATCAACCAGCAAACAAGGT 59.638 45.455 0.00 0.00 37.20 3.50
3346 4841 2.331194 GCATGTCATCAACCAGCAAAC 58.669 47.619 0.00 0.00 0.00 2.93
3489 4984 8.570068 AGAATTTTGATGCTGGCAAATTAATT 57.430 26.923 0.00 0.00 35.41 1.40
3507 5002 5.222048 TGTCCAACCTGGTAGCTAGAATTTT 60.222 40.000 0.00 0.00 39.03 1.82
3511 5006 2.897350 TGTCCAACCTGGTAGCTAGAA 58.103 47.619 0.00 0.00 39.03 2.10
3593 5088 2.993899 CTGCTCGTCCTGATTTTAACGT 59.006 45.455 0.00 0.00 36.55 3.99
3605 5100 2.358247 TTTTCCGGCTGCTCGTCC 60.358 61.111 0.00 0.00 0.00 4.79
3631 5126 3.162666 TCCTTACCTTCGAGCTCTTTGA 58.837 45.455 12.85 0.00 0.00 2.69
3642 5137 0.178068 TCGCCTGCATCCTTACCTTC 59.822 55.000 0.00 0.00 0.00 3.46
3673 5168 2.719705 ACCCCTTGTTAAGATCCACCAA 59.280 45.455 0.00 0.00 0.00 3.67
3781 5276 3.517901 CTCACCTCCACAATGTTAGGGTA 59.482 47.826 14.09 3.36 33.16 3.69
3809 5305 1.279496 CCAACTCATCTCCACTCCCA 58.721 55.000 0.00 0.00 0.00 4.37
3907 5403 1.876156 CTCAGGCTTTGACTTCACCAC 59.124 52.381 0.00 0.00 0.00 4.16
3997 5493 6.984474 GGAACCATGTATCGAAGTTCAAGATA 59.016 38.462 3.32 0.41 38.83 1.98
4077 5573 7.112452 TCATCTTAGTAGCAGTATTCTTGCA 57.888 36.000 0.00 0.00 0.00 4.08
4106 5602 9.834628 GAATGAGTTTTGTCCGTGAATTTAATA 57.165 29.630 0.00 0.00 0.00 0.98
4169 5665 9.120538 ACAGCAAAAGAAAAGATTAGAAGTACA 57.879 29.630 0.00 0.00 0.00 2.90
4305 5801 2.223386 GCCAACTTTGTTTCTACGCACA 60.223 45.455 0.00 0.00 0.00 4.57
4554 6050 6.775142 TCATGACTAACAAGAACAATGGGAAA 59.225 34.615 0.00 0.00 0.00 3.13
4557 6053 5.392380 GCTCATGACTAACAAGAACAATGGG 60.392 44.000 0.00 0.00 0.00 4.00
4653 6149 6.538742 TGACTAACAAGAACAAGAAGAACCAG 59.461 38.462 0.00 0.00 0.00 4.00
4659 6155 5.239306 TGCCATGACTAACAAGAACAAGAAG 59.761 40.000 0.00 0.00 0.00 2.85
4959 6458 3.963383 ACTTCACGGCAACACTAAAAG 57.037 42.857 0.00 0.00 0.00 2.27
5070 6569 4.317769 GCAAACGGTGAAATTAACAAGTGC 60.318 41.667 0.00 0.00 0.00 4.40
5084 6583 3.617540 TTATCAAGTGTGCAAACGGTG 57.382 42.857 0.16 4.41 0.00 4.94
5121 6859 8.264347 TCAGTGATGTTATAGAAGTAAATGGCA 58.736 33.333 0.00 0.00 0.00 4.92
5518 7256 8.246180 AGAACTTTGGTTTCATATGCACATAAG 58.754 33.333 0.00 7.10 35.58 1.73
5526 7264 6.368791 TCACGAGAGAACTTTGGTTTCATATG 59.631 38.462 0.00 0.00 35.58 1.78
5567 7305 2.674852 CAGTCGACAAAGGGACATCATG 59.325 50.000 19.50 0.00 35.63 3.07
5833 7571 2.896685 TGCAACAAAATTAGGTGGGAGG 59.103 45.455 0.00 0.00 0.00 4.30
5881 7619 1.264749 ATCGAGGTGCCTGCCACTTA 61.265 55.000 0.00 0.00 44.08 2.24
5922 7660 6.205658 GCGAGAATTATTCAGGAGCCTTAAAT 59.794 38.462 7.74 0.00 0.00 1.40
5942 7680 1.623311 TCCAAGGACAAGAATGCGAGA 59.377 47.619 0.00 0.00 0.00 4.04
6001 7739 6.571731 GCTGATGCTGCCAATGATTATTACAT 60.572 38.462 0.00 0.00 36.03 2.29
6061 7799 8.969260 AAAAGCAAAAGAAAGATCAAAATCCT 57.031 26.923 0.00 0.00 31.78 3.24
6183 7926 7.765695 AATGTTGTGACAAGTAGGATGAAAT 57.234 32.000 0.00 0.00 39.66 2.17
6184 7927 7.424803 CAAATGTTGTGACAAGTAGGATGAAA 58.575 34.615 0.00 0.00 39.66 2.69
6185 7928 6.016360 CCAAATGTTGTGACAAGTAGGATGAA 60.016 38.462 0.00 0.00 39.66 2.57
6292 8047 7.136289 TCTCCGAACACCAATAATGTTTTAC 57.864 36.000 0.00 0.00 40.36 2.01
6307 8062 4.748892 CTCTTAGCTCAAATCTCCGAACA 58.251 43.478 0.00 0.00 0.00 3.18
6363 8118 6.011981 ACCATCCAAGATTACCCAAGAAGTTA 60.012 38.462 0.00 0.00 0.00 2.24
6375 8130 4.635473 AGAGGGAAGACCATCCAAGATTA 58.365 43.478 0.00 0.00 46.71 1.75
6419 8174 1.075601 TGATTGAAGGGGGCACTTCT 58.924 50.000 18.06 3.54 45.49 2.85
6429 8184 2.551721 CCCTCCCATCGATGATTGAAGG 60.552 54.545 26.86 20.96 0.00 3.46
6431 8186 1.421268 CCCCTCCCATCGATGATTGAA 59.579 52.381 26.86 6.05 0.00 2.69
6432 8187 1.059098 CCCCTCCCATCGATGATTGA 58.941 55.000 26.86 17.28 0.00 2.57
6433 8188 0.767375 ACCCCTCCCATCGATGATTG 59.233 55.000 26.86 14.09 0.00 2.67
6434 8189 0.767375 CACCCCTCCCATCGATGATT 59.233 55.000 26.86 0.00 0.00 2.57
6435 8190 1.772819 GCACCCCTCCCATCGATGAT 61.773 60.000 26.86 0.26 0.00 2.45
6436 8191 2.443394 GCACCCCTCCCATCGATGA 61.443 63.158 26.86 6.80 0.00 2.92
6437 8192 2.111878 GCACCCCTCCCATCGATG 59.888 66.667 18.76 18.76 0.00 3.84
6438 8193 3.171388 GGCACCCCTCCCATCGAT 61.171 66.667 0.00 0.00 0.00 3.59
6439 8194 4.414956 AGGCACCCCTCCCATCGA 62.415 66.667 0.00 0.00 36.46 3.59
6440 8195 4.181010 CAGGCACCCCTCCCATCG 62.181 72.222 0.00 0.00 40.33 3.84
6441 8196 0.768221 TATCAGGCACCCCTCCCATC 60.768 60.000 0.00 0.00 40.33 3.51
6442 8197 0.328450 TTATCAGGCACCCCTCCCAT 60.328 55.000 0.00 0.00 40.33 4.00
6443 8198 0.328450 ATTATCAGGCACCCCTCCCA 60.328 55.000 0.00 0.00 40.33 4.37
6444 8199 0.853530 AATTATCAGGCACCCCTCCC 59.146 55.000 0.00 0.00 40.33 4.30
6445 8200 1.479389 CCAATTATCAGGCACCCCTCC 60.479 57.143 0.00 0.00 40.33 4.30
6446 8201 1.494721 TCCAATTATCAGGCACCCCTC 59.505 52.381 0.00 0.00 40.33 4.30
6447 8202 1.607225 TCCAATTATCAGGCACCCCT 58.393 50.000 0.00 0.00 44.25 4.79
6448 8203 2.310538 CTTCCAATTATCAGGCACCCC 58.689 52.381 0.00 0.00 0.00 4.95
6449 8204 2.310538 CCTTCCAATTATCAGGCACCC 58.689 52.381 0.00 0.00 0.00 4.61
6450 8205 2.310538 CCCTTCCAATTATCAGGCACC 58.689 52.381 0.00 0.00 0.00 5.01
6451 8206 2.310538 CCCCTTCCAATTATCAGGCAC 58.689 52.381 0.00 0.00 0.00 5.01
6452 8207 1.929494 ACCCCTTCCAATTATCAGGCA 59.071 47.619 0.00 0.00 0.00 4.75
6453 8208 2.310538 CACCCCTTCCAATTATCAGGC 58.689 52.381 0.00 0.00 0.00 4.85
6454 8209 2.091665 AGCACCCCTTCCAATTATCAGG 60.092 50.000 0.00 0.00 0.00 3.86
6455 8210 3.303351 AGCACCCCTTCCAATTATCAG 57.697 47.619 0.00 0.00 0.00 2.90
6456 8211 3.631250 GAAGCACCCCTTCCAATTATCA 58.369 45.455 0.00 0.00 43.39 2.15
6466 8221 1.140134 TGCCCTTAGAAGCACCCCTT 61.140 55.000 0.00 0.00 33.08 3.95
6467 8222 0.921256 ATGCCCTTAGAAGCACCCCT 60.921 55.000 0.00 0.00 42.84 4.79
6468 8223 0.033109 AATGCCCTTAGAAGCACCCC 60.033 55.000 0.00 0.00 42.84 4.95
6469 8224 1.852633 AAATGCCCTTAGAAGCACCC 58.147 50.000 0.00 0.00 42.84 4.61
6470 8225 4.674362 CGTTAAAATGCCCTTAGAAGCACC 60.674 45.833 0.00 0.00 42.84 5.01
6488 8243 7.527084 AAACAAATTTGCAAGTTAGCGTTAA 57.473 28.000 18.12 0.00 37.31 2.01
6494 8249 5.196825 CGCCAAAACAAATTTGCAAGTTAG 58.803 37.500 18.12 2.93 45.79 2.34
6499 8254 2.352960 GGACGCCAAAACAAATTTGCAA 59.647 40.909 18.12 0.00 45.79 4.08
6530 8285 1.377202 CATTGTCCACGGACCCCTG 60.377 63.158 13.60 4.84 43.97 4.45
6532 8287 0.748005 CATCATTGTCCACGGACCCC 60.748 60.000 13.60 0.00 43.97 4.95
6553 8308 1.022735 GCATTGGATGACAGCCTCTG 58.977 55.000 11.74 9.26 37.52 3.35
6554 8309 0.917533 AGCATTGGATGACAGCCTCT 59.082 50.000 11.74 0.26 0.00 3.69
6559 8314 8.880750 CATATACAAGATAGCATTGGATGACAG 58.119 37.037 0.00 0.00 33.26 3.51
6560 8315 8.377799 ACATATACAAGATAGCATTGGATGACA 58.622 33.333 0.00 0.00 33.26 3.58
6577 8381 7.786046 ACCCTATACATTCGGACATATACAA 57.214 36.000 0.00 0.00 0.00 2.41
6614 8418 8.269424 CGTGTGCTATGTATCAGACTTTTATTC 58.731 37.037 0.00 0.00 0.00 1.75
6636 8440 1.004560 CTGGTGTGATGGAGCGTGT 60.005 57.895 0.00 0.00 0.00 4.49
6638 8442 2.046892 GCTGGTGTGATGGAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
6643 8447 0.107993 ATCTGACGCTGGTGTGATGG 60.108 55.000 0.00 0.00 0.00 3.51
6644 8448 1.284657 GATCTGACGCTGGTGTGATG 58.715 55.000 0.00 0.00 0.00 3.07
6652 8456 1.434622 GGGCATGTGATCTGACGCTG 61.435 60.000 0.00 0.00 0.00 5.18
6655 8459 0.249615 ATCGGGCATGTGATCTGACG 60.250 55.000 0.00 0.00 0.00 4.35
6708 8512 2.890311 TCTTTTGTCATCGGGCATGTTT 59.110 40.909 0.00 0.00 33.66 2.83
6717 8521 5.525012 TCTGGCAGATATTCTTTTGTCATCG 59.475 40.000 14.43 0.00 0.00 3.84
6755 8559 4.142049 TGCCGGTCAAAAACATCTCTTTTT 60.142 37.500 1.90 0.00 34.34 1.94
6759 8563 2.270352 TGCCGGTCAAAAACATCTCT 57.730 45.000 1.90 0.00 0.00 3.10
6771 8577 1.749258 GAGGGTTGGATTGCCGGTC 60.749 63.158 1.90 0.00 36.79 4.79
6772 8578 2.355115 GAGGGTTGGATTGCCGGT 59.645 61.111 1.90 0.00 36.79 5.28
6773 8579 2.440247 GGAGGGTTGGATTGCCGG 60.440 66.667 0.00 0.00 36.79 6.13
6774 8580 1.452108 GAGGAGGGTTGGATTGCCG 60.452 63.158 0.00 0.00 36.79 5.69
6775 8581 1.076705 GGAGGAGGGTTGGATTGCC 60.077 63.158 0.00 0.00 0.00 4.52
6776 8582 0.681243 GTGGAGGAGGGTTGGATTGC 60.681 60.000 0.00 0.00 0.00 3.56
6777 8583 0.392998 CGTGGAGGAGGGTTGGATTG 60.393 60.000 0.00 0.00 0.00 2.67
6778 8584 1.991230 CGTGGAGGAGGGTTGGATT 59.009 57.895 0.00 0.00 0.00 3.01
6779 8585 2.670148 GCGTGGAGGAGGGTTGGAT 61.670 63.158 0.00 0.00 0.00 3.41
6780 8586 3.319198 GCGTGGAGGAGGGTTGGA 61.319 66.667 0.00 0.00 0.00 3.53
6781 8587 3.316573 GAGCGTGGAGGAGGGTTGG 62.317 68.421 0.00 0.00 0.00 3.77
6782 8588 2.111999 TTGAGCGTGGAGGAGGGTTG 62.112 60.000 0.00 0.00 0.00 3.77
6783 8589 1.831652 CTTGAGCGTGGAGGAGGGTT 61.832 60.000 0.00 0.00 0.00 4.11
6784 8590 2.203788 TTGAGCGTGGAGGAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
6785 8591 2.581354 CTTGAGCGTGGAGGAGGG 59.419 66.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.