Multiple sequence alignment - TraesCS6B01G234600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G234600 chr6B 100.000 2357 0 0 1 2357 394496642 394498998 0.000000e+00 4353
1 TraesCS6B01G234600 chr6B 98.870 2124 21 3 1 2122 596657307 596655185 0.000000e+00 3786
2 TraesCS6B01G234600 chr1A 98.966 2127 17 3 1 2122 238109746 238107620 0.000000e+00 3801
3 TraesCS6B01G234600 chr1A 98.825 2127 20 3 1 2122 238155131 238153005 0.000000e+00 3784
4 TraesCS6B01G234600 chr7D 98.917 2124 21 2 1 2122 579015577 579017700 0.000000e+00 3794
5 TraesCS6B01G234600 chr5A 98.825 2127 20 3 1 2122 16577921 16575795 0.000000e+00 3784
6 TraesCS6B01G234600 chrUn 98.775 2123 21 3 1 2121 237257831 237255712 0.000000e+00 3771
7 TraesCS6B01G234600 chr7A 98.590 2127 25 3 1 2122 60329011 60326885 0.000000e+00 3757
8 TraesCS6B01G234600 chr7A 94.909 275 13 1 2083 2357 4948740 4949013 1.670000e-116 429
9 TraesCS6B01G234600 chr3B 98.354 2127 28 5 1 2122 483372315 483374439 0.000000e+00 3727
10 TraesCS6B01G234600 chr3B 93.151 292 15 5 2052 2340 575801346 575801635 7.790000e-115 424
11 TraesCS6B01G234600 chr4D 98.211 2124 36 2 1 2122 123520837 123518714 0.000000e+00 3711
12 TraesCS6B01G234600 chr4D 92.808 292 18 3 2051 2340 123670779 123671069 1.010000e-113 420
13 TraesCS6B01G234600 chr6D 92.466 292 19 3 2051 2340 102355424 102355714 4.690000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G234600 chr6B 394496642 394498998 2356 False 4353 4353 100.000 1 2357 1 chr6B.!!$F1 2356
1 TraesCS6B01G234600 chr6B 596655185 596657307 2122 True 3786 3786 98.870 1 2122 1 chr6B.!!$R1 2121
2 TraesCS6B01G234600 chr1A 238107620 238109746 2126 True 3801 3801 98.966 1 2122 1 chr1A.!!$R1 2121
3 TraesCS6B01G234600 chr1A 238153005 238155131 2126 True 3784 3784 98.825 1 2122 1 chr1A.!!$R2 2121
4 TraesCS6B01G234600 chr7D 579015577 579017700 2123 False 3794 3794 98.917 1 2122 1 chr7D.!!$F1 2121
5 TraesCS6B01G234600 chr5A 16575795 16577921 2126 True 3784 3784 98.825 1 2122 1 chr5A.!!$R1 2121
6 TraesCS6B01G234600 chrUn 237255712 237257831 2119 True 3771 3771 98.775 1 2121 1 chrUn.!!$R1 2120
7 TraesCS6B01G234600 chr7A 60326885 60329011 2126 True 3757 3757 98.590 1 2122 1 chr7A.!!$R1 2121
8 TraesCS6B01G234600 chr3B 483372315 483374439 2124 False 3727 3727 98.354 1 2122 1 chr3B.!!$F1 2121
9 TraesCS6B01G234600 chr4D 123518714 123520837 2123 True 3711 3711 98.211 1 2122 1 chr4D.!!$R1 2121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 2.203182 TCACGGTCCTGTTCCCCT 59.797 61.111 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1718 2.390696 TCTACGATCCGGAATTCCCAA 58.609 47.619 19.01 7.4 34.14 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.203182 TCACGGTCCTGTTCCCCT 59.797 61.111 0.00 0.00 0.00 4.79
129 130 5.771666 GGAGATATTCATTCCATTCAGGCAA 59.228 40.000 0.00 0.00 37.29 4.52
145 146 3.249189 AAGTGAGGAAGGGCGGCA 61.249 61.111 12.47 0.00 0.00 5.69
834 835 2.346244 CGTTAGCGCATCCGTTTTCTTA 59.654 45.455 11.47 0.00 36.67 2.10
1357 1362 1.068741 GTGCTTCGGATCGGGAGTAAT 59.931 52.381 10.09 0.00 0.00 1.89
1517 1522 0.319986 TATGCCTGCGTGTTTCGACA 60.320 50.000 0.00 0.00 42.86 4.35
1713 1718 4.559862 ATTCGAGGAGTCAAGGATTTGT 57.440 40.909 0.00 0.00 35.73 2.83
2081 2086 6.553100 AGGAAATTGTGGTCCTCAAAACAATA 59.447 34.615 10.30 0.00 40.38 1.90
2124 2135 7.545362 ACATCACGATATCTTTTTCTTCTGG 57.455 36.000 0.34 0.00 0.00 3.86
2125 2136 7.106239 ACATCACGATATCTTTTTCTTCTGGT 58.894 34.615 0.34 0.00 0.00 4.00
2126 2137 7.607991 ACATCACGATATCTTTTTCTTCTGGTT 59.392 33.333 0.34 0.00 0.00 3.67
2127 2138 9.098355 CATCACGATATCTTTTTCTTCTGGTTA 57.902 33.333 0.34 0.00 0.00 2.85
2128 2139 9.838339 ATCACGATATCTTTTTCTTCTGGTTAT 57.162 29.630 0.34 0.00 0.00 1.89
2129 2140 9.098355 TCACGATATCTTTTTCTTCTGGTTATG 57.902 33.333 0.34 0.00 0.00 1.90
2130 2141 7.852945 CACGATATCTTTTTCTTCTGGTTATGC 59.147 37.037 0.34 0.00 0.00 3.14
2131 2142 7.065894 CGATATCTTTTTCTTCTGGTTATGCG 58.934 38.462 0.34 0.00 0.00 4.73
2132 2143 7.254455 CGATATCTTTTTCTTCTGGTTATGCGT 60.254 37.037 0.34 0.00 0.00 5.24
2133 2144 6.575162 ATCTTTTTCTTCTGGTTATGCGTT 57.425 33.333 0.00 0.00 0.00 4.84
2134 2145 6.385649 TCTTTTTCTTCTGGTTATGCGTTT 57.614 33.333 0.00 0.00 0.00 3.60
2135 2146 6.801575 TCTTTTTCTTCTGGTTATGCGTTTT 58.198 32.000 0.00 0.00 0.00 2.43
2136 2147 6.915843 TCTTTTTCTTCTGGTTATGCGTTTTC 59.084 34.615 0.00 0.00 0.00 2.29
2137 2148 4.759516 TTCTTCTGGTTATGCGTTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
2138 2149 4.015872 TCTTCTGGTTATGCGTTTTCCT 57.984 40.909 0.00 0.00 0.00 3.36
2139 2150 4.000988 TCTTCTGGTTATGCGTTTTCCTC 58.999 43.478 0.00 0.00 0.00 3.71
2140 2151 3.695830 TCTGGTTATGCGTTTTCCTCT 57.304 42.857 0.00 0.00 0.00 3.69
2141 2152 3.334691 TCTGGTTATGCGTTTTCCTCTG 58.665 45.455 0.00 0.00 0.00 3.35
2142 2153 1.810151 TGGTTATGCGTTTTCCTCTGC 59.190 47.619 0.00 0.00 0.00 4.26
2143 2154 1.810151 GGTTATGCGTTTTCCTCTGCA 59.190 47.619 0.00 0.00 42.22 4.41
2144 2155 2.414161 GGTTATGCGTTTTCCTCTGCAC 60.414 50.000 0.00 0.00 40.61 4.57
2145 2156 2.472695 TATGCGTTTTCCTCTGCACT 57.527 45.000 0.00 0.00 40.61 4.40
2146 2157 1.609208 ATGCGTTTTCCTCTGCACTT 58.391 45.000 0.00 0.00 40.61 3.16
2147 2158 1.388547 TGCGTTTTCCTCTGCACTTT 58.611 45.000 0.00 0.00 31.31 2.66
2148 2159 1.748493 TGCGTTTTCCTCTGCACTTTT 59.252 42.857 0.00 0.00 31.31 2.27
2149 2160 2.223479 TGCGTTTTCCTCTGCACTTTTC 60.223 45.455 0.00 0.00 31.31 2.29
2150 2161 2.033424 GCGTTTTCCTCTGCACTTTTCT 59.967 45.455 0.00 0.00 0.00 2.52
2151 2162 3.489229 GCGTTTTCCTCTGCACTTTTCTT 60.489 43.478 0.00 0.00 0.00 2.52
2152 2163 4.672409 CGTTTTCCTCTGCACTTTTCTTT 58.328 39.130 0.00 0.00 0.00 2.52
2153 2164 4.500477 CGTTTTCCTCTGCACTTTTCTTTG 59.500 41.667 0.00 0.00 0.00 2.77
2154 2165 5.410924 GTTTTCCTCTGCACTTTTCTTTGT 58.589 37.500 0.00 0.00 0.00 2.83
2155 2166 6.560711 GTTTTCCTCTGCACTTTTCTTTGTA 58.439 36.000 0.00 0.00 0.00 2.41
2156 2167 6.959639 TTTCCTCTGCACTTTTCTTTGTAT 57.040 33.333 0.00 0.00 0.00 2.29
2157 2168 6.959639 TTCCTCTGCACTTTTCTTTGTATT 57.040 33.333 0.00 0.00 0.00 1.89
2158 2169 6.959639 TCCTCTGCACTTTTCTTTGTATTT 57.040 33.333 0.00 0.00 0.00 1.40
2159 2170 6.970484 TCCTCTGCACTTTTCTTTGTATTTC 58.030 36.000 0.00 0.00 0.00 2.17
2160 2171 6.545666 TCCTCTGCACTTTTCTTTGTATTTCA 59.454 34.615 0.00 0.00 0.00 2.69
2161 2172 7.231317 TCCTCTGCACTTTTCTTTGTATTTCAT 59.769 33.333 0.00 0.00 0.00 2.57
2162 2173 7.869429 CCTCTGCACTTTTCTTTGTATTTCATT 59.131 33.333 0.00 0.00 0.00 2.57
2163 2174 9.252962 CTCTGCACTTTTCTTTGTATTTCATTT 57.747 29.630 0.00 0.00 0.00 2.32
2175 2186 9.450807 CTTTGTATTTCATTTATGGAATCGTCC 57.549 33.333 0.00 0.00 45.21 4.79
2183 2194 2.582436 GGAATCGTCCGGGCAGAA 59.418 61.111 6.96 0.00 33.05 3.02
2184 2195 1.078708 GGAATCGTCCGGGCAGAAA 60.079 57.895 6.96 0.00 33.05 2.52
2185 2196 1.366854 GGAATCGTCCGGGCAGAAAC 61.367 60.000 6.96 3.36 33.05 2.78
2186 2197 1.693083 GAATCGTCCGGGCAGAAACG 61.693 60.000 6.96 5.72 36.50 3.60
2192 2203 3.737172 CGGGCAGAAACGGGCAAG 61.737 66.667 0.00 0.00 0.00 4.01
2193 2204 2.282180 GGGCAGAAACGGGCAAGA 60.282 61.111 0.00 0.00 0.00 3.02
2194 2205 1.901464 GGGCAGAAACGGGCAAGAA 60.901 57.895 0.00 0.00 0.00 2.52
2195 2206 1.250840 GGGCAGAAACGGGCAAGAAT 61.251 55.000 0.00 0.00 0.00 2.40
2196 2207 0.171231 GGCAGAAACGGGCAAGAATC 59.829 55.000 0.00 0.00 0.00 2.52
2197 2208 1.168714 GCAGAAACGGGCAAGAATCT 58.831 50.000 0.00 0.00 0.00 2.40
2198 2209 1.131315 GCAGAAACGGGCAAGAATCTC 59.869 52.381 0.00 0.00 0.00 2.75
2199 2210 2.704572 CAGAAACGGGCAAGAATCTCT 58.295 47.619 0.00 0.00 0.00 3.10
2200 2211 3.077359 CAGAAACGGGCAAGAATCTCTT 58.923 45.455 0.00 0.00 37.14 2.85
2201 2212 3.126000 CAGAAACGGGCAAGAATCTCTTC 59.874 47.826 0.00 0.00 33.78 2.87
2202 2213 3.008485 AGAAACGGGCAAGAATCTCTTCT 59.992 43.478 0.00 0.00 43.71 2.85
2203 2214 2.393271 ACGGGCAAGAATCTCTTCTG 57.607 50.000 0.00 0.00 40.93 3.02
2204 2215 1.625818 ACGGGCAAGAATCTCTTCTGT 59.374 47.619 0.00 0.00 40.93 3.41
2205 2216 2.275318 CGGGCAAGAATCTCTTCTGTC 58.725 52.381 0.00 0.00 40.93 3.51
2206 2217 2.275318 GGGCAAGAATCTCTTCTGTCG 58.725 52.381 0.00 0.00 40.93 4.35
2207 2218 2.354203 GGGCAAGAATCTCTTCTGTCGT 60.354 50.000 0.00 0.00 40.93 4.34
2208 2219 3.119101 GGGCAAGAATCTCTTCTGTCGTA 60.119 47.826 0.00 0.00 40.93 3.43
2209 2220 4.109050 GGCAAGAATCTCTTCTGTCGTAG 58.891 47.826 0.00 0.00 40.93 3.51
2210 2221 4.142359 GGCAAGAATCTCTTCTGTCGTAGA 60.142 45.833 0.00 0.00 40.93 2.59
2211 2222 5.034152 GCAAGAATCTCTTCTGTCGTAGAG 58.966 45.833 0.00 0.00 40.93 2.43
2212 2223 5.577835 CAAGAATCTCTTCTGTCGTAGAGG 58.422 45.833 0.00 0.00 40.93 3.69
2213 2224 3.630312 AGAATCTCTTCTGTCGTAGAGGC 59.370 47.826 0.00 0.00 40.28 4.70
2214 2225 1.752683 TCTCTTCTGTCGTAGAGGCC 58.247 55.000 0.00 0.00 38.70 5.19
2215 2226 1.282447 TCTCTTCTGTCGTAGAGGCCT 59.718 52.381 3.86 3.86 38.70 5.19
2216 2227 1.673920 CTCTTCTGTCGTAGAGGCCTC 59.326 57.143 26.22 26.22 36.95 4.70
2217 2228 0.378962 CTTCTGTCGTAGAGGCCTCG 59.621 60.000 26.95 16.51 36.95 4.63
2218 2229 0.322277 TTCTGTCGTAGAGGCCTCGT 60.322 55.000 26.95 17.22 36.95 4.18
2219 2230 0.743701 TCTGTCGTAGAGGCCTCGTC 60.744 60.000 26.95 21.04 36.95 4.20
2220 2231 2.037913 CTGTCGTAGAGGCCTCGTCG 62.038 65.000 31.75 31.75 36.95 5.12
2221 2232 1.812922 GTCGTAGAGGCCTCGTCGA 60.813 63.158 34.13 34.13 36.95 4.20
2222 2233 1.521010 TCGTAGAGGCCTCGTCGAG 60.521 63.158 34.13 22.94 35.85 4.04
2223 2234 1.814586 CGTAGAGGCCTCGTCGAGT 60.815 63.158 33.05 18.07 34.54 4.18
2224 2235 1.722677 GTAGAGGCCTCGTCGAGTG 59.277 63.158 26.95 12.85 34.09 3.51
2225 2236 2.113433 TAGAGGCCTCGTCGAGTGC 61.113 63.158 26.95 20.59 34.09 4.40
2226 2237 2.538512 TAGAGGCCTCGTCGAGTGCT 62.539 60.000 26.95 16.83 34.09 4.40
2227 2238 2.992114 AGGCCTCGTCGAGTGCTT 60.992 61.111 25.00 19.15 0.00 3.91
2228 2239 2.507324 GGCCTCGTCGAGTGCTTC 60.507 66.667 25.00 12.78 0.00 3.86
2229 2240 2.507324 GCCTCGTCGAGTGCTTCC 60.507 66.667 20.37 0.00 0.00 3.46
2230 2241 2.202492 CCTCGTCGAGTGCTTCCG 60.202 66.667 20.37 0.00 0.00 4.30
2231 2242 2.876645 CTCGTCGAGTGCTTCCGC 60.877 66.667 14.27 0.00 0.00 5.54
2232 2243 3.329688 CTCGTCGAGTGCTTCCGCT 62.330 63.158 14.27 0.00 36.97 5.52
2233 2244 1.978712 CTCGTCGAGTGCTTCCGCTA 61.979 60.000 14.27 0.00 36.97 4.26
2234 2245 1.868251 CGTCGAGTGCTTCCGCTAC 60.868 63.158 0.00 0.00 36.97 3.58
2235 2246 1.868251 GTCGAGTGCTTCCGCTACG 60.868 63.158 0.00 0.00 36.97 3.51
2236 2247 3.248171 CGAGTGCTTCCGCTACGC 61.248 66.667 0.00 0.00 36.97 4.42
2237 2248 2.886124 GAGTGCTTCCGCTACGCC 60.886 66.667 0.00 0.00 36.97 5.68
2238 2249 3.642778 GAGTGCTTCCGCTACGCCA 62.643 63.158 0.00 0.00 36.97 5.69
2239 2250 3.188786 GTGCTTCCGCTACGCCAG 61.189 66.667 0.00 0.00 36.97 4.85
2240 2251 4.451150 TGCTTCCGCTACGCCAGG 62.451 66.667 0.00 0.00 36.97 4.45
2241 2252 4.143333 GCTTCCGCTACGCCAGGA 62.143 66.667 0.00 0.00 0.00 3.86
2242 2253 2.105128 CTTCCGCTACGCCAGGAG 59.895 66.667 0.00 0.00 35.23 3.69
2243 2254 2.361992 TTCCGCTACGCCAGGAGA 60.362 61.111 0.00 0.00 35.23 3.71
2244 2255 1.739338 CTTCCGCTACGCCAGGAGAT 61.739 60.000 0.00 0.00 35.23 2.75
2245 2256 2.016393 TTCCGCTACGCCAGGAGATG 62.016 60.000 0.00 0.00 35.23 2.90
2246 2257 2.490148 CCGCTACGCCAGGAGATGA 61.490 63.158 0.00 0.00 0.00 2.92
2247 2258 1.662608 CGCTACGCCAGGAGATGAT 59.337 57.895 0.00 0.00 0.00 2.45
2248 2259 0.665670 CGCTACGCCAGGAGATGATG 60.666 60.000 0.00 0.00 0.00 3.07
2249 2260 0.676184 GCTACGCCAGGAGATGATGA 59.324 55.000 0.00 0.00 0.00 2.92
2250 2261 1.274728 GCTACGCCAGGAGATGATGAT 59.725 52.381 0.00 0.00 0.00 2.45
2251 2262 2.673610 GCTACGCCAGGAGATGATGATC 60.674 54.545 0.00 0.00 0.00 2.92
2252 2263 0.683973 ACGCCAGGAGATGATGATCC 59.316 55.000 0.00 0.00 35.71 3.36
2253 2264 0.683412 CGCCAGGAGATGATGATCCA 59.317 55.000 0.00 0.00 38.12 3.41
2254 2265 1.071228 CGCCAGGAGATGATGATCCAA 59.929 52.381 0.00 0.00 38.12 3.53
2255 2266 2.780714 GCCAGGAGATGATGATCCAAG 58.219 52.381 0.00 0.00 38.12 3.61
2256 2267 2.371179 GCCAGGAGATGATGATCCAAGA 59.629 50.000 0.00 0.00 38.12 3.02
2257 2268 3.181447 GCCAGGAGATGATGATCCAAGAA 60.181 47.826 0.00 0.00 38.12 2.52
2258 2269 4.688045 GCCAGGAGATGATGATCCAAGAAA 60.688 45.833 0.00 0.00 38.12 2.52
2259 2270 5.443283 CCAGGAGATGATGATCCAAGAAAA 58.557 41.667 0.00 0.00 38.12 2.29
2260 2271 5.889853 CCAGGAGATGATGATCCAAGAAAAA 59.110 40.000 0.00 0.00 38.12 1.94
2277 2288 2.721425 AAAACAAAGTGGGACGGAGA 57.279 45.000 0.00 0.00 0.00 3.71
2278 2289 2.256117 AAACAAAGTGGGACGGAGAG 57.744 50.000 0.00 0.00 0.00 3.20
2279 2290 1.420430 AACAAAGTGGGACGGAGAGA 58.580 50.000 0.00 0.00 0.00 3.10
2280 2291 0.680061 ACAAAGTGGGACGGAGAGAC 59.320 55.000 0.00 0.00 0.00 3.36
2281 2292 0.388649 CAAAGTGGGACGGAGAGACG 60.389 60.000 0.00 0.00 40.31 4.18
2282 2293 2.156051 AAAGTGGGACGGAGAGACGC 62.156 60.000 0.00 0.00 37.37 5.19
2283 2294 4.131088 GTGGGACGGAGAGACGCC 62.131 72.222 0.00 0.00 37.37 5.68
2290 2301 3.207354 GGAGAGACGCCGATGGAA 58.793 61.111 0.00 0.00 0.00 3.53
2291 2302 1.515954 GGAGAGACGCCGATGGAAA 59.484 57.895 0.00 0.00 0.00 3.13
2292 2303 0.108329 GGAGAGACGCCGATGGAAAA 60.108 55.000 0.00 0.00 0.00 2.29
2293 2304 1.281899 GAGAGACGCCGATGGAAAAG 58.718 55.000 0.00 0.00 0.00 2.27
2294 2305 0.895530 AGAGACGCCGATGGAAAAGA 59.104 50.000 0.00 0.00 0.00 2.52
2295 2306 1.134965 AGAGACGCCGATGGAAAAGAG 60.135 52.381 0.00 0.00 0.00 2.85
2296 2307 0.108138 AGACGCCGATGGAAAAGAGG 60.108 55.000 0.00 0.00 0.00 3.69
2297 2308 0.108329 GACGCCGATGGAAAAGAGGA 60.108 55.000 0.00 0.00 0.00 3.71
2298 2309 0.108138 ACGCCGATGGAAAAGAGGAG 60.108 55.000 0.00 0.00 0.00 3.69
2299 2310 0.108138 CGCCGATGGAAAAGAGGAGT 60.108 55.000 0.00 0.00 0.00 3.85
2300 2311 1.676014 CGCCGATGGAAAAGAGGAGTT 60.676 52.381 0.00 0.00 0.00 3.01
2301 2312 1.740025 GCCGATGGAAAAGAGGAGTTG 59.260 52.381 0.00 0.00 0.00 3.16
2302 2313 2.615493 GCCGATGGAAAAGAGGAGTTGA 60.615 50.000 0.00 0.00 0.00 3.18
2303 2314 3.265791 CCGATGGAAAAGAGGAGTTGAG 58.734 50.000 0.00 0.00 0.00 3.02
2304 2315 3.265791 CGATGGAAAAGAGGAGTTGAGG 58.734 50.000 0.00 0.00 0.00 3.86
2305 2316 3.307059 CGATGGAAAAGAGGAGTTGAGGT 60.307 47.826 0.00 0.00 0.00 3.85
2306 2317 3.771577 TGGAAAAGAGGAGTTGAGGTC 57.228 47.619 0.00 0.00 0.00 3.85
2307 2318 3.045634 TGGAAAAGAGGAGTTGAGGTCA 58.954 45.455 0.00 0.00 0.00 4.02
2308 2319 3.071602 TGGAAAAGAGGAGTTGAGGTCAG 59.928 47.826 0.00 0.00 0.00 3.51
2309 2320 3.325135 GGAAAAGAGGAGTTGAGGTCAGA 59.675 47.826 0.00 0.00 0.00 3.27
2310 2321 4.562552 GGAAAAGAGGAGTTGAGGTCAGAG 60.563 50.000 0.00 0.00 0.00 3.35
2311 2322 1.555967 AGAGGAGTTGAGGTCAGAGC 58.444 55.000 0.00 0.00 0.00 4.09
2312 2323 0.534873 GAGGAGTTGAGGTCAGAGCC 59.465 60.000 0.00 0.00 0.00 4.70
2313 2324 0.178921 AGGAGTTGAGGTCAGAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
2314 2325 0.908198 GGAGTTGAGGTCAGAGCCAT 59.092 55.000 0.00 0.00 0.00 4.40
2315 2326 1.134551 GGAGTTGAGGTCAGAGCCATC 60.135 57.143 0.00 0.00 0.00 3.51
2316 2327 0.908198 AGTTGAGGTCAGAGCCATCC 59.092 55.000 0.00 0.00 0.00 3.51
2317 2328 0.615331 GTTGAGGTCAGAGCCATCCA 59.385 55.000 0.00 0.00 0.00 3.41
2318 2329 0.615331 TTGAGGTCAGAGCCATCCAC 59.385 55.000 0.00 0.00 0.00 4.02
2319 2330 0.545071 TGAGGTCAGAGCCATCCACA 60.545 55.000 0.00 0.00 0.00 4.17
2320 2331 0.615331 GAGGTCAGAGCCATCCACAA 59.385 55.000 0.00 0.00 0.00 3.33
2321 2332 0.617413 AGGTCAGAGCCATCCACAAG 59.383 55.000 0.00 0.00 0.00 3.16
2322 2333 1.028868 GGTCAGAGCCATCCACAAGC 61.029 60.000 0.00 0.00 0.00 4.01
2323 2334 1.028868 GTCAGAGCCATCCACAAGCC 61.029 60.000 0.00 0.00 0.00 4.35
2324 2335 1.001764 CAGAGCCATCCACAAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
2325 2336 1.001641 AGAGCCATCCACAAGCCAC 60.002 57.895 0.00 0.00 0.00 5.01
2326 2337 1.303561 GAGCCATCCACAAGCCACA 60.304 57.895 0.00 0.00 0.00 4.17
2327 2338 1.589716 GAGCCATCCACAAGCCACAC 61.590 60.000 0.00 0.00 0.00 3.82
2328 2339 2.639327 GCCATCCACAAGCCACACC 61.639 63.158 0.00 0.00 0.00 4.16
2329 2340 1.978617 CCATCCACAAGCCACACCC 60.979 63.158 0.00 0.00 0.00 4.61
2330 2341 1.978617 CATCCACAAGCCACACCCC 60.979 63.158 0.00 0.00 0.00 4.95
2331 2342 3.567579 ATCCACAAGCCACACCCCG 62.568 63.158 0.00 0.00 0.00 5.73
2342 2353 4.653888 CACCCCGCCGAACCCTTT 62.654 66.667 0.00 0.00 0.00 3.11
2343 2354 3.893399 ACCCCGCCGAACCCTTTT 61.893 61.111 0.00 0.00 0.00 2.27
2344 2355 3.060000 CCCCGCCGAACCCTTTTC 61.060 66.667 0.00 0.00 0.00 2.29
2345 2356 3.060000 CCCGCCGAACCCTTTTCC 61.060 66.667 0.00 0.00 0.00 3.13
2346 2357 2.033602 CCGCCGAACCCTTTTCCT 59.966 61.111 0.00 0.00 0.00 3.36
2347 2358 2.332654 CCGCCGAACCCTTTTCCTG 61.333 63.158 0.00 0.00 0.00 3.86
2348 2359 1.302192 CGCCGAACCCTTTTCCTGA 60.302 57.895 0.00 0.00 0.00 3.86
2349 2360 0.887387 CGCCGAACCCTTTTCCTGAA 60.887 55.000 0.00 0.00 0.00 3.02
2350 2361 0.881796 GCCGAACCCTTTTCCTGAAG 59.118 55.000 0.00 0.00 0.00 3.02
2351 2362 0.881796 CCGAACCCTTTTCCTGAAGC 59.118 55.000 0.00 0.00 0.00 3.86
2352 2363 1.604604 CGAACCCTTTTCCTGAAGCA 58.395 50.000 0.00 0.00 0.00 3.91
2353 2364 1.266989 CGAACCCTTTTCCTGAAGCAC 59.733 52.381 0.00 0.00 0.00 4.40
2354 2365 1.613925 GAACCCTTTTCCTGAAGCACC 59.386 52.381 0.00 0.00 0.00 5.01
2355 2366 0.555769 ACCCTTTTCCTGAAGCACCA 59.444 50.000 0.00 0.00 0.00 4.17
2356 2367 1.147817 ACCCTTTTCCTGAAGCACCAT 59.852 47.619 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 3.011517 ATGCCGCCCTTCCTCACT 61.012 61.111 0.00 0.00 0.00 3.41
145 146 0.250513 GAAGACAGGGTCAAGCCGAT 59.749 55.000 0.00 0.00 38.44 4.18
1357 1362 3.496331 CCCTTTGCCCTTTCTAAAGTGA 58.504 45.455 2.03 0.00 34.20 3.41
1713 1718 2.390696 TCTACGATCCGGAATTCCCAA 58.609 47.619 19.01 7.40 34.14 4.12
2122 2133 1.810151 GCAGAGGAAAACGCATAACCA 59.190 47.619 0.00 0.00 0.00 3.67
2123 2134 1.810151 TGCAGAGGAAAACGCATAACC 59.190 47.619 0.00 0.00 0.00 2.85
2124 2135 2.484264 AGTGCAGAGGAAAACGCATAAC 59.516 45.455 0.00 0.00 36.64 1.89
2125 2136 2.778299 AGTGCAGAGGAAAACGCATAA 58.222 42.857 0.00 0.00 36.64 1.90
2126 2137 2.472695 AGTGCAGAGGAAAACGCATA 57.527 45.000 0.00 0.00 36.64 3.14
2127 2138 1.609208 AAGTGCAGAGGAAAACGCAT 58.391 45.000 0.00 0.00 36.64 4.73
2128 2139 1.388547 AAAGTGCAGAGGAAAACGCA 58.611 45.000 0.00 0.00 0.00 5.24
2129 2140 2.033424 AGAAAAGTGCAGAGGAAAACGC 59.967 45.455 0.00 0.00 0.00 4.84
2130 2141 3.971032 AGAAAAGTGCAGAGGAAAACG 57.029 42.857 0.00 0.00 0.00 3.60
2131 2142 5.410924 ACAAAGAAAAGTGCAGAGGAAAAC 58.589 37.500 0.00 0.00 0.00 2.43
2132 2143 5.659440 ACAAAGAAAAGTGCAGAGGAAAA 57.341 34.783 0.00 0.00 0.00 2.29
2133 2144 6.959639 ATACAAAGAAAAGTGCAGAGGAAA 57.040 33.333 0.00 0.00 0.00 3.13
2134 2145 6.959639 AATACAAAGAAAAGTGCAGAGGAA 57.040 33.333 0.00 0.00 0.00 3.36
2135 2146 6.545666 TGAAATACAAAGAAAAGTGCAGAGGA 59.454 34.615 0.00 0.00 0.00 3.71
2136 2147 6.738114 TGAAATACAAAGAAAAGTGCAGAGG 58.262 36.000 0.00 0.00 0.00 3.69
2137 2148 8.807667 AATGAAATACAAAGAAAAGTGCAGAG 57.192 30.769 0.00 0.00 0.00 3.35
2149 2160 9.450807 GGACGATTCCATAAATGAAATACAAAG 57.549 33.333 0.00 0.00 42.30 2.77
2150 2161 8.126074 CGGACGATTCCATAAATGAAATACAAA 58.874 33.333 0.00 0.00 43.00 2.83
2151 2162 7.254966 CCGGACGATTCCATAAATGAAATACAA 60.255 37.037 0.00 0.00 43.00 2.41
2152 2163 6.203915 CCGGACGATTCCATAAATGAAATACA 59.796 38.462 0.00 0.00 43.00 2.29
2153 2164 6.348213 CCCGGACGATTCCATAAATGAAATAC 60.348 42.308 0.73 0.00 43.00 1.89
2154 2165 5.703592 CCCGGACGATTCCATAAATGAAATA 59.296 40.000 0.73 0.00 43.00 1.40
2155 2166 4.518970 CCCGGACGATTCCATAAATGAAAT 59.481 41.667 0.73 0.00 43.00 2.17
2156 2167 3.880490 CCCGGACGATTCCATAAATGAAA 59.120 43.478 0.73 0.00 43.00 2.69
2157 2168 3.472652 CCCGGACGATTCCATAAATGAA 58.527 45.455 0.73 0.00 43.00 2.57
2158 2169 2.808933 GCCCGGACGATTCCATAAATGA 60.809 50.000 0.73 0.00 43.00 2.57
2159 2170 1.535462 GCCCGGACGATTCCATAAATG 59.465 52.381 0.73 0.00 43.00 2.32
2160 2171 1.142060 TGCCCGGACGATTCCATAAAT 59.858 47.619 0.73 0.00 43.00 1.40
2161 2172 0.542333 TGCCCGGACGATTCCATAAA 59.458 50.000 0.73 0.00 43.00 1.40
2162 2173 0.105964 CTGCCCGGACGATTCCATAA 59.894 55.000 0.73 0.00 43.00 1.90
2163 2174 0.757561 TCTGCCCGGACGATTCCATA 60.758 55.000 0.73 0.00 43.00 2.74
2164 2175 1.622607 TTCTGCCCGGACGATTCCAT 61.623 55.000 0.73 0.00 43.00 3.41
2165 2176 1.832719 TTTCTGCCCGGACGATTCCA 61.833 55.000 0.73 0.00 43.00 3.53
2166 2177 1.078708 TTTCTGCCCGGACGATTCC 60.079 57.895 0.73 0.00 38.77 3.01
2167 2178 1.693083 CGTTTCTGCCCGGACGATTC 61.693 60.000 0.73 0.00 37.69 2.52
2168 2179 1.740296 CGTTTCTGCCCGGACGATT 60.740 57.895 0.73 0.00 37.69 3.34
2169 2180 2.125673 CGTTTCTGCCCGGACGAT 60.126 61.111 0.73 0.00 37.69 3.73
2175 2186 3.737172 CTTGCCCGTTTCTGCCCG 61.737 66.667 0.00 0.00 0.00 6.13
2176 2187 1.250840 ATTCTTGCCCGTTTCTGCCC 61.251 55.000 0.00 0.00 0.00 5.36
2177 2188 0.171231 GATTCTTGCCCGTTTCTGCC 59.829 55.000 0.00 0.00 0.00 4.85
2178 2189 1.131315 GAGATTCTTGCCCGTTTCTGC 59.869 52.381 0.00 0.00 0.00 4.26
2179 2190 2.704572 AGAGATTCTTGCCCGTTTCTG 58.295 47.619 0.00 0.00 0.00 3.02
2180 2191 3.008485 AGAAGAGATTCTTGCCCGTTTCT 59.992 43.478 0.00 0.00 36.73 2.52
2181 2192 3.126000 CAGAAGAGATTCTTGCCCGTTTC 59.874 47.826 0.00 0.00 36.73 2.78
2182 2193 3.077359 CAGAAGAGATTCTTGCCCGTTT 58.923 45.455 0.00 0.00 36.73 3.60
2183 2194 2.039084 ACAGAAGAGATTCTTGCCCGTT 59.961 45.455 0.00 0.00 36.73 4.44
2184 2195 1.625818 ACAGAAGAGATTCTTGCCCGT 59.374 47.619 0.00 0.00 36.73 5.28
2185 2196 2.275318 GACAGAAGAGATTCTTGCCCG 58.725 52.381 0.00 0.00 36.73 6.13
2186 2197 2.275318 CGACAGAAGAGATTCTTGCCC 58.725 52.381 0.00 0.00 36.73 5.36
2187 2198 2.966050 ACGACAGAAGAGATTCTTGCC 58.034 47.619 0.00 0.00 36.73 4.52
2188 2199 4.987832 TCTACGACAGAAGAGATTCTTGC 58.012 43.478 0.00 0.00 36.73 4.01
2189 2200 5.577835 CCTCTACGACAGAAGAGATTCTTG 58.422 45.833 0.98 0.00 41.51 3.02
2190 2201 4.097286 GCCTCTACGACAGAAGAGATTCTT 59.903 45.833 0.98 0.00 41.51 2.52
2191 2202 3.630312 GCCTCTACGACAGAAGAGATTCT 59.370 47.826 0.98 0.00 41.51 2.40
2192 2203 3.243267 GGCCTCTACGACAGAAGAGATTC 60.243 52.174 0.00 0.00 41.51 2.52
2193 2204 2.691011 GGCCTCTACGACAGAAGAGATT 59.309 50.000 0.00 0.00 41.51 2.40
2194 2205 2.092103 AGGCCTCTACGACAGAAGAGAT 60.092 50.000 0.00 0.00 41.51 2.75
2195 2206 1.282447 AGGCCTCTACGACAGAAGAGA 59.718 52.381 0.00 0.00 41.51 3.10
2196 2207 1.673920 GAGGCCTCTACGACAGAAGAG 59.326 57.143 26.25 0.00 39.19 2.85
2197 2208 1.752683 GAGGCCTCTACGACAGAAGA 58.247 55.000 26.25 0.00 31.12 2.87
2198 2209 0.378962 CGAGGCCTCTACGACAGAAG 59.621 60.000 29.73 6.88 31.12 2.85
2199 2210 0.322277 ACGAGGCCTCTACGACAGAA 60.322 55.000 29.73 0.00 31.12 3.02
2200 2211 0.743701 GACGAGGCCTCTACGACAGA 60.744 60.000 29.73 0.00 0.00 3.41
2201 2212 1.722677 GACGAGGCCTCTACGACAG 59.277 63.158 29.73 14.98 0.00 3.51
2202 2213 2.104859 CGACGAGGCCTCTACGACA 61.105 63.158 30.79 0.00 0.00 4.35
2203 2214 1.764180 CTCGACGAGGCCTCTACGAC 61.764 65.000 32.03 20.52 33.85 4.34
2204 2215 1.521010 CTCGACGAGGCCTCTACGA 60.521 63.158 32.69 32.69 35.20 3.43
2205 2216 1.814586 ACTCGACGAGGCCTCTACG 60.815 63.158 29.73 29.62 33.35 3.51
2206 2217 1.722677 CACTCGACGAGGCCTCTAC 59.277 63.158 29.73 20.86 33.35 2.59
2207 2218 2.113433 GCACTCGACGAGGCCTCTA 61.113 63.158 29.73 11.88 33.35 2.43
2208 2219 3.444805 GCACTCGACGAGGCCTCT 61.445 66.667 29.73 17.05 33.35 3.69
2209 2220 2.875684 GAAGCACTCGACGAGGCCTC 62.876 65.000 27.39 23.79 33.35 4.70
2210 2221 2.992114 AAGCACTCGACGAGGCCT 60.992 61.111 27.39 19.20 33.35 5.19
2211 2222 2.507324 GAAGCACTCGACGAGGCC 60.507 66.667 27.39 17.38 33.35 5.19
2212 2223 2.507324 GGAAGCACTCGACGAGGC 60.507 66.667 27.39 24.80 33.35 4.70
2213 2224 2.202492 CGGAAGCACTCGACGAGG 60.202 66.667 27.39 17.29 33.35 4.63
2231 2242 2.094286 GGATCATCATCTCCTGGCGTAG 60.094 54.545 0.00 0.00 0.00 3.51
2232 2243 1.895798 GGATCATCATCTCCTGGCGTA 59.104 52.381 0.00 0.00 0.00 4.42
2233 2244 0.683973 GGATCATCATCTCCTGGCGT 59.316 55.000 0.00 0.00 0.00 5.68
2234 2245 0.683412 TGGATCATCATCTCCTGGCG 59.317 55.000 0.00 0.00 32.47 5.69
2235 2246 2.371179 TCTTGGATCATCATCTCCTGGC 59.629 50.000 0.00 0.00 32.47 4.85
2236 2247 4.701651 TTCTTGGATCATCATCTCCTGG 57.298 45.455 0.00 0.00 32.47 4.45
2257 2268 2.949644 CTCTCCGTCCCACTTTGTTTTT 59.050 45.455 0.00 0.00 0.00 1.94
2258 2269 2.171870 TCTCTCCGTCCCACTTTGTTTT 59.828 45.455 0.00 0.00 0.00 2.43
2259 2270 1.766496 TCTCTCCGTCCCACTTTGTTT 59.234 47.619 0.00 0.00 0.00 2.83
2260 2271 1.070289 GTCTCTCCGTCCCACTTTGTT 59.930 52.381 0.00 0.00 0.00 2.83
2261 2272 0.680061 GTCTCTCCGTCCCACTTTGT 59.320 55.000 0.00 0.00 0.00 2.83
2262 2273 0.388649 CGTCTCTCCGTCCCACTTTG 60.389 60.000 0.00 0.00 0.00 2.77
2263 2274 1.965219 CGTCTCTCCGTCCCACTTT 59.035 57.895 0.00 0.00 0.00 2.66
2264 2275 2.637383 GCGTCTCTCCGTCCCACTT 61.637 63.158 0.00 0.00 0.00 3.16
2265 2276 3.063084 GCGTCTCTCCGTCCCACT 61.063 66.667 0.00 0.00 0.00 4.00
2266 2277 4.131088 GGCGTCTCTCCGTCCCAC 62.131 72.222 0.00 0.00 0.00 4.61
2269 2280 3.210528 ATCGGCGTCTCTCCGTCC 61.211 66.667 6.85 0.00 46.49 4.79
2270 2281 2.024871 CATCGGCGTCTCTCCGTC 59.975 66.667 6.85 0.00 46.49 4.79
2271 2282 3.518998 CCATCGGCGTCTCTCCGT 61.519 66.667 6.85 0.00 46.49 4.69
2273 2284 0.108329 TTTTCCATCGGCGTCTCTCC 60.108 55.000 6.85 0.00 0.00 3.71
2274 2285 1.135083 TCTTTTCCATCGGCGTCTCTC 60.135 52.381 6.85 0.00 0.00 3.20
2275 2286 0.895530 TCTTTTCCATCGGCGTCTCT 59.104 50.000 6.85 0.00 0.00 3.10
2276 2287 1.281899 CTCTTTTCCATCGGCGTCTC 58.718 55.000 6.85 0.00 0.00 3.36
2277 2288 0.108138 CCTCTTTTCCATCGGCGTCT 60.108 55.000 6.85 0.00 0.00 4.18
2278 2289 0.108329 TCCTCTTTTCCATCGGCGTC 60.108 55.000 6.85 0.00 0.00 5.19
2279 2290 0.108138 CTCCTCTTTTCCATCGGCGT 60.108 55.000 6.85 0.00 0.00 5.68
2280 2291 0.108138 ACTCCTCTTTTCCATCGGCG 60.108 55.000 0.00 0.00 0.00 6.46
2281 2292 1.740025 CAACTCCTCTTTTCCATCGGC 59.260 52.381 0.00 0.00 0.00 5.54
2282 2293 3.265791 CTCAACTCCTCTTTTCCATCGG 58.734 50.000 0.00 0.00 0.00 4.18
2283 2294 3.265791 CCTCAACTCCTCTTTTCCATCG 58.734 50.000 0.00 0.00 0.00 3.84
2284 2295 4.257731 GACCTCAACTCCTCTTTTCCATC 58.742 47.826 0.00 0.00 0.00 3.51
2285 2296 3.652869 TGACCTCAACTCCTCTTTTCCAT 59.347 43.478 0.00 0.00 0.00 3.41
2286 2297 3.045634 TGACCTCAACTCCTCTTTTCCA 58.954 45.455 0.00 0.00 0.00 3.53
2287 2298 3.325135 TCTGACCTCAACTCCTCTTTTCC 59.675 47.826 0.00 0.00 0.00 3.13
2288 2299 4.565022 CTCTGACCTCAACTCCTCTTTTC 58.435 47.826 0.00 0.00 0.00 2.29
2289 2300 3.244387 GCTCTGACCTCAACTCCTCTTTT 60.244 47.826 0.00 0.00 0.00 2.27
2290 2301 2.301583 GCTCTGACCTCAACTCCTCTTT 59.698 50.000 0.00 0.00 0.00 2.52
2291 2302 1.899142 GCTCTGACCTCAACTCCTCTT 59.101 52.381 0.00 0.00 0.00 2.85
2292 2303 1.555967 GCTCTGACCTCAACTCCTCT 58.444 55.000 0.00 0.00 0.00 3.69
2293 2304 0.534873 GGCTCTGACCTCAACTCCTC 59.465 60.000 0.00 0.00 0.00 3.71
2294 2305 0.178921 TGGCTCTGACCTCAACTCCT 60.179 55.000 0.00 0.00 0.00 3.69
2295 2306 0.908198 ATGGCTCTGACCTCAACTCC 59.092 55.000 0.00 0.00 0.00 3.85
2296 2307 1.134551 GGATGGCTCTGACCTCAACTC 60.135 57.143 0.00 0.00 0.00 3.01
2297 2308 0.908198 GGATGGCTCTGACCTCAACT 59.092 55.000 0.00 0.00 0.00 3.16
2298 2309 0.615331 TGGATGGCTCTGACCTCAAC 59.385 55.000 0.00 0.00 0.00 3.18
2299 2310 0.615331 GTGGATGGCTCTGACCTCAA 59.385 55.000 0.00 0.00 0.00 3.02
2300 2311 0.545071 TGTGGATGGCTCTGACCTCA 60.545 55.000 0.00 0.00 0.00 3.86
2301 2312 0.615331 TTGTGGATGGCTCTGACCTC 59.385 55.000 0.00 0.00 0.00 3.85
2302 2313 0.617413 CTTGTGGATGGCTCTGACCT 59.383 55.000 0.00 0.00 0.00 3.85
2303 2314 1.028868 GCTTGTGGATGGCTCTGACC 61.029 60.000 0.00 0.00 0.00 4.02
2304 2315 1.028868 GGCTTGTGGATGGCTCTGAC 61.029 60.000 0.00 0.00 0.00 3.51
2305 2316 1.300963 GGCTTGTGGATGGCTCTGA 59.699 57.895 0.00 0.00 0.00 3.27
2306 2317 1.001764 TGGCTTGTGGATGGCTCTG 60.002 57.895 0.00 0.00 0.00 3.35
2307 2318 1.001641 GTGGCTTGTGGATGGCTCT 60.002 57.895 0.00 0.00 0.00 4.09
2308 2319 1.303561 TGTGGCTTGTGGATGGCTC 60.304 57.895 0.00 0.00 0.00 4.70
2309 2320 1.604593 GTGTGGCTTGTGGATGGCT 60.605 57.895 0.00 0.00 0.00 4.75
2310 2321 2.639327 GGTGTGGCTTGTGGATGGC 61.639 63.158 0.00 0.00 0.00 4.40
2311 2322 1.978617 GGGTGTGGCTTGTGGATGG 60.979 63.158 0.00 0.00 0.00 3.51
2312 2323 1.978617 GGGGTGTGGCTTGTGGATG 60.979 63.158 0.00 0.00 0.00 3.51
2313 2324 2.440599 GGGGTGTGGCTTGTGGAT 59.559 61.111 0.00 0.00 0.00 3.41
2314 2325 4.263572 CGGGGTGTGGCTTGTGGA 62.264 66.667 0.00 0.00 0.00 4.02
2325 2336 4.653888 AAAGGGTTCGGCGGGGTG 62.654 66.667 7.21 0.00 0.00 4.61
2326 2337 3.855503 GAAAAGGGTTCGGCGGGGT 62.856 63.158 7.21 0.00 0.00 4.95
2327 2338 3.060000 GAAAAGGGTTCGGCGGGG 61.060 66.667 7.21 0.00 0.00 5.73
2328 2339 3.060000 GGAAAAGGGTTCGGCGGG 61.060 66.667 7.21 0.00 0.00 6.13
2329 2340 2.033602 AGGAAAAGGGTTCGGCGG 59.966 61.111 7.21 0.00 0.00 6.13
2330 2341 0.887387 TTCAGGAAAAGGGTTCGGCG 60.887 55.000 0.00 0.00 0.00 6.46
2331 2342 0.881796 CTTCAGGAAAAGGGTTCGGC 59.118 55.000 0.00 0.00 0.00 5.54
2332 2343 0.881796 GCTTCAGGAAAAGGGTTCGG 59.118 55.000 0.00 0.00 0.00 4.30
2333 2344 1.266989 GTGCTTCAGGAAAAGGGTTCG 59.733 52.381 0.00 0.00 0.00 3.95
2334 2345 1.613925 GGTGCTTCAGGAAAAGGGTTC 59.386 52.381 0.00 0.00 0.00 3.62
2335 2346 1.063266 TGGTGCTTCAGGAAAAGGGTT 60.063 47.619 0.00 0.00 0.00 4.11
2336 2347 0.555769 TGGTGCTTCAGGAAAAGGGT 59.444 50.000 0.00 0.00 0.00 4.34
2337 2348 1.928868 ATGGTGCTTCAGGAAAAGGG 58.071 50.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.