AutoCloner

Multiple sequence alignment - TraesCS6B01G233500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G233500	chr6B	100.000	3214	0	0	1	3214	389255206	389251993	0.000000e+00	5936
1	TraesCS6B01G233500	chr6B	85.398	1308	109	33	1193	2463	184800955	184799693	0.000000e+00	1282
2	TraesCS6B01G233500	chr6B	91.557	758	43	11	2461	3214	184798603	184797863	0.000000e+00	1026
3	TraesCS6B01G233500	chr2D	90.855	1673	90	31	839	2463	53958713	53960370	0.000000e+00	2183
4	TraesCS6B01G233500	chr2D	88.278	1092	83	19	1389	2445	16062308	16063389	0.000000e+00	1266
5	TraesCS6B01G233500	chr2D	94.591	758	29	7	2458	3214	53961335	53962081	0.000000e+00	1162
6	TraesCS6B01G233500	chr7D	90.541	1681	96	27	826	2463	273666131	273667791	0.000000e+00	2165
7	TraesCS6B01G233500	chr7D	90.433	1662	96	27	846	2463	182511517	182509875	0.000000e+00	2130
8	TraesCS6B01G233500	chr7D	94.723	758	31	6	2458	3214	273668756	273669505	0.000000e+00	1170
9	TraesCS6B01G233500	chr7D	94.570	755	32	6	2461	3214	182508907	182508161	0.000000e+00	1158
10	TraesCS6B01G233500	chr3D	90.588	1668	94	26	838	2463	397202175	397203821	0.000000e+00	2152
11	TraesCS6B01G233500	chr3D	90.699	1645	93	25	861	2463	84493330	84491704	0.000000e+00	2135
12	TraesCS6B01G233500	chr3D	95.119	758	28	6	2458	3214	397204786	397205535	0.000000e+00	1186
13	TraesCS6B01G233500	chr3D	95.099	755	28	6	2461	3214	84490736	84489990	0.000000e+00	1181
14	TraesCS6B01G233500	chr3D	90.499	842	74	4	1	838	257086904	257087743	0.000000e+00	1107
15	TraesCS6B01G233500	chr7A	91.462	1464	89	19	835	2274	663818729	663817278	0.000000e+00	1978
16	TraesCS6B01G233500	chr7A	90.639	1143	77	10	1151	2274	663820661	663819530	0.000000e+00	1491
17	TraesCS6B01G233500	chr7A	89.692	844	79	4	1	839	533592683	533591843	0.000000e+00	1070
18	TraesCS6B01G233500	chr7A	91.425	758	44	11	2461	3214	621577145	621576405	0.000000e+00	1020
19	TraesCS6B01G233500	chr7A	90.840	262	23	1	853	1113	663821230	663820969	1.830000e-92	350
20	TraesCS6B01G233500	chr2A	92.319	1341	64	22	1142	2463	25376920	25375600	0.000000e+00	1869
21	TraesCS6B01G233500	chr2A	90.059	845	76	3	1	839	601828689	601827847	0.000000e+00	1088
22	TraesCS6B01G233500	chr2A	89.573	844	81	3	1	839	138925009	138924168	0.000000e+00	1064
23	TraesCS6B01G233500	chr2A	89.286	112	7	3	838	949	25377458	25377352	5.590000e-28	135
24	TraesCS6B01G233500	chr5B	85.474	1308	108	34	1193	2463	330620398	330621660	0.000000e+00	1288
25	TraesCS6B01G233500	chr5B	90.539	761	50	12	2458	3214	330622743	330623485	0.000000e+00	987
26	TraesCS6B01G233500	chr1D	90.143	842	76	6	1	839	176372421	176371584	0.000000e+00	1088
27	TraesCS6B01G233500	chr1D	90.024	842	76	7	3	840	337080063	337080900	0.000000e+00	1083
28	TraesCS6B01G233500	chr1B	90.024	842	81	2	1	840	365875587	365874747	0.000000e+00	1086
29	TraesCS6B01G233500	chr1A	90.775	813	71	3	1	811	22574071	22573261	0.000000e+00	1083
30	TraesCS6B01G233500	chr4A	89.586	845	77	8	1	840	281829471	281830309	0.000000e+00	1062
31	TraesCS6B01G233500	chr2B	90.539	761	51	10	2458	3214	33816386	33817129	0.000000e+00	987
32	TraesCS6B01G233500	chr3A	83.987	612	73	16	879	1481	423244712	423244117	6.020000e-157	564

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G233500	chr6B	389251993	389255206	3213	True	5936.0	5936	100.000000	1	3214	1	chr6B.!!$R1	3213
1	TraesCS6B01G233500	chr6B	184797863	184800955	3092	True	1154.0	1282	88.477500	1193	3214	2	chr6B.!!$R2	2021
2	TraesCS6B01G233500	chr2D	53958713	53962081	3368	False	1672.5	2183	92.723000	839	3214	2	chr2D.!!$F2	2375
3	TraesCS6B01G233500	chr2D	16062308	16063389	1081	False	1266.0	1266	88.278000	1389	2445	1	chr2D.!!$F1	1056
4	TraesCS6B01G233500	chr7D	273666131	273669505	3374	False	1667.5	2165	92.632000	826	3214	2	chr7D.!!$F1	2388
5	TraesCS6B01G233500	chr7D	182508161	182511517	3356	True	1644.0	2130	92.501500	846	3214	2	chr7D.!!$R1	2368
6	TraesCS6B01G233500	chr3D	397202175	397205535	3360	False	1669.0	2152	92.853500	838	3214	2	chr3D.!!$F2	2376
7	TraesCS6B01G233500	chr3D	84489990	84493330	3340	True	1658.0	2135	92.899000	861	3214	2	chr3D.!!$R1	2353
8	TraesCS6B01G233500	chr3D	257086904	257087743	839	False	1107.0	1107	90.499000	1	838	1	chr3D.!!$F1	837
9	TraesCS6B01G233500	chr7A	663817278	663821230	3952	True	1273.0	1978	90.980333	835	2274	3	chr7A.!!$R3	1439
10	TraesCS6B01G233500	chr7A	533591843	533592683	840	True	1070.0	1070	89.692000	1	839	1	chr7A.!!$R1	838
11	TraesCS6B01G233500	chr7A	621576405	621577145	740	True	1020.0	1020	91.425000	2461	3214	1	chr7A.!!$R2	753
12	TraesCS6B01G233500	chr2A	601827847	601828689	842	True	1088.0	1088	90.059000	1	839	1	chr2A.!!$R2	838
13	TraesCS6B01G233500	chr2A	138924168	138925009	841	True	1064.0	1064	89.573000	1	839	1	chr2A.!!$R1	838
14	TraesCS6B01G233500	chr2A	25375600	25377458	1858	True	1002.0	1869	90.802500	838	2463	2	chr2A.!!$R3	1625
15	TraesCS6B01G233500	chr5B	330620398	330623485	3087	False	1137.5	1288	88.006500	1193	3214	2	chr5B.!!$F1	2021
16	TraesCS6B01G233500	chr1D	176371584	176372421	837	True	1088.0	1088	90.143000	1	839	1	chr1D.!!$R1	838
17	TraesCS6B01G233500	chr1D	337080063	337080900	837	False	1083.0	1083	90.024000	3	840	1	chr1D.!!$F1	837
18	TraesCS6B01G233500	chr1B	365874747	365875587	840	True	1086.0	1086	90.024000	1	840	1	chr1B.!!$R1	839
19	TraesCS6B01G233500	chr1A	22573261	22574071	810	True	1083.0	1083	90.775000	1	811	1	chr1A.!!$R1	810
20	TraesCS6B01G233500	chr4A	281829471	281830309	838	False	1062.0	1062	89.586000	1	840	1	chr4A.!!$F1	839
21	TraesCS6B01G233500	chr2B	33816386	33817129	743	False	987.0	987	90.539000	2458	3214	1	chr2B.!!$F1	756
22	TraesCS6B01G233500	chr3A	423244117	423244712	595	True	564.0	564	83.987000	879	1481	1	chr3A.!!$R1	602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
223	224	1.339151	GGATTTGAGCCTCTGTTCGGT	60.339	52.381	0.0	0.0	0.0	4.69	F
1061	3029	0.462047	CCCACTAATCCGCTCACCAC	60.462	60.000	0.0	0.0	0.0	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1562	3544	0.452184	TTCGCCACGATCAGAGAGAC	59.548	55.0	0.00	0.0	35.23	3.36	R
2265	4299	0.892755	CTGCCGGTAGTGTAGTTCCA	59.107	55.0	11.99	0.0	0.00	3.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
198	199	2.639327	GCAACACCCTGTGCATCCC	61.639	63.158	0.00	0.00	36.98	3.85
217	218	1.688772	CCCATGGATTTGAGCCTCTG	58.311	55.000	15.22	0.00	0.00	3.35
223	224	1.339151	GGATTTGAGCCTCTGTTCGGT	60.339	52.381	0.00	0.00	0.00	4.69
280	281	2.621338	GCTCATGACTTTCACATCCGA	58.379	47.619	0.00	0.00	0.00	4.55
371	379	4.080129	ACCCTATCAACTAGTAGGACGTGA	60.080	45.833	10.51	3.32	39.91	4.35
381	391	4.457834	AGTAGGACGTGATGGAGAAAAG	57.542	45.455	0.00	0.00	0.00	2.27
486	496	4.513442	TCAAACTACCGATGAAGATTGGG	58.487	43.478	0.00	0.00	37.44	4.12
488	498	5.188163	TCAAACTACCGATGAAGATTGGGTA	59.812	40.000	0.00	0.00	37.44	3.69
502	512	2.447408	TGGGTAGAGCGATAACCAGA	57.553	50.000	4.07	0.00	37.61	3.86
559	570	5.592688	AGTAAAAAGTGTAGCTTGGCAAAGA	59.407	36.000	4.56	0.00	37.52	2.52
583	594	8.807118	AGACTTCTCAACTCACAATATTAGTGA	58.193	33.333	15.39	15.39	43.23	3.41
675	686	8.541133	ACTAGCAAGAGAGAAAACAATCTAAC	57.459	34.615	0.00	0.00	0.00	2.34
817	828	2.092838	GTGACGATCAAGTAGCAGCAAC	59.907	50.000	0.00	0.00	0.00	4.17
840	851	7.559590	ACAATAATGTCCTGAGTAGCAAATC	57.440	36.000	0.00	0.00	33.41	2.17
841	852	7.341805	ACAATAATGTCCTGAGTAGCAAATCT	58.658	34.615	0.00	0.00	33.41	2.40
842	853	8.486210	ACAATAATGTCCTGAGTAGCAAATCTA	58.514	33.333	0.00	0.00	33.41	1.98
843	854	9.499479	CAATAATGTCCTGAGTAGCAAATCTAT	57.501	33.333	0.00	0.00	0.00	1.98
988	2934	2.487762	TGGTCTGCCATCGAAACAAATC	59.512	45.455	0.00	0.00	40.46	2.17
1019	2965	2.045926	GTTCTGCCGGTCTGCCAT	60.046	61.111	1.90	0.00	34.09	4.40
1024	2971	2.359850	GCCGGTCTGCCATCAACA	60.360	61.111	1.90	0.00	34.09	3.33
1028	2975	1.299541	CGGTCTGCCATCAACATACC	58.700	55.000	0.00	0.00	32.46	2.73
1061	3029	0.462047	CCCACTAATCCGCTCACCAC	60.462	60.000	0.00	0.00	0.00	4.16
1076	3044	1.961277	CCACCACGTCTCAGTTGCC	60.961	63.158	0.00	0.00	0.00	4.52
1122	3094	2.844362	CATAGCGCCCCCTCTCCA	60.844	66.667	2.29	0.00	0.00	3.86
1157	3129	2.190578	CCTCCCTGTTCCCATCGC	59.809	66.667	0.00	0.00	0.00	4.58
1158	3130	2.190578	CTCCCTGTTCCCATCGCC	59.809	66.667	0.00	0.00	0.00	5.54
1159	3131	3.740128	CTCCCTGTTCCCATCGCCG	62.740	68.421	0.00	0.00	0.00	6.46
1254	3235	1.598701	GGCAAAGCGGCAGAGGAATT	61.599	55.000	1.45	0.00	40.76	2.17
1525	3506	2.813908	GTACGCCTCCACTTGCCG	60.814	66.667	0.00	0.00	0.00	5.69
1544	3526	2.591715	ACTTCGCGCTTTGCAGGT	60.592	55.556	5.56	0.00	46.97	4.00
1562	3544	4.632153	CAGGTTTTCATATAGGGTCTCCG	58.368	47.826	0.00	0.00	38.33	4.63
1563	3545	4.101119	CAGGTTTTCATATAGGGTCTCCGT	59.899	45.833	0.00	0.00	38.33	4.69
1564	3546	4.344390	AGGTTTTCATATAGGGTCTCCGTC	59.656	45.833	0.00	0.00	38.33	4.79
1565	3547	4.344390	GGTTTTCATATAGGGTCTCCGTCT	59.656	45.833	0.00	0.00	38.33	4.18
1566	3548	5.509332	GGTTTTCATATAGGGTCTCCGTCTC	60.509	48.000	0.00	0.00	38.33	3.36
1567	3549	4.726035	TTCATATAGGGTCTCCGTCTCT	57.274	45.455	0.00	0.00	38.33	3.10
1568	3550	4.289238	TCATATAGGGTCTCCGTCTCTC	57.711	50.000	0.00	0.00	38.33	3.20
1569	3551	3.911260	TCATATAGGGTCTCCGTCTCTCT	59.089	47.826	0.00	0.00	38.33	3.10
1639	3639	2.039624	TCCTCCCCAGCCAGAGAC	59.960	66.667	0.00	0.00	31.43	3.36
1652	3652	3.695606	GAGACCCACCGCTGAGCA	61.696	66.667	4.88	0.00	0.00	4.26
1682	3682	8.628280	CACTTCTCCATTCTTTTTCTTCTTCTT	58.372	33.333	0.00	0.00	0.00	2.52
1691	3691	8.817092	TTCTTTTTCTTCTTCTTTTACCCAGA	57.183	30.769	0.00	0.00	0.00	3.86
1763	3770	7.230108	CAGGAATCTACAGCACAAATAATGGAT	59.770	37.037	0.00	0.00	0.00	3.41
2104	4136	5.964477	TCTGAAGTTGTTCTGTATAGGGGAT	59.036	40.000	0.00	0.00	34.20	3.85
2121	4155	5.934781	AGGGGATTGAATTGTATGAGAGTC	58.065	41.667	0.00	0.00	0.00	3.36
2265	4299	1.227089	CTCGGCAGTGCTAATCGCT	60.227	57.895	16.11	0.00	40.11	4.93
2300	4335	0.394762	GCAGTGCCATCCAATCCTCA	60.395	55.000	2.85	0.00	0.00	3.86
2385	4421	4.891168	TGGATGCATCAGATTAATGTGCTT	59.109	37.500	27.25	4.33	36.78	3.91
2521	6050	4.481368	AGTCATATTACAGCGGTTTCCA	57.519	40.909	0.00	0.00	0.00	3.53
2522	6051	4.442706	AGTCATATTACAGCGGTTTCCAG	58.557	43.478	0.00	0.00	0.00	3.86
2744	6274	7.931407	TCAAGCTCAACTTTTGTGTTATCTAGA	59.069	33.333	0.00	0.00	36.04	2.43
2751	6281	8.935844	CAACTTTTGTGTTATCTAGATGCAGTA	58.064	33.333	15.79	4.25	0.00	2.74
2768	6298	3.006537	GCAGTACTAGGACTGGTTGTTGA	59.993	47.826	31.77	0.00	45.85	3.18
2823	6353	5.182001	GCCTTTTTGAGCTTGATGTCTTCTA	59.818	40.000	0.00	0.00	0.00	2.10
2937	6468	4.919774	TTTGTATAGGAGGCCTTGTTGA	57.080	40.909	6.77	0.00	34.61	3.18
3014	6545	3.634910	GTGTGGCTTTGGTCTTCCTAAAA	59.365	43.478	0.00	0.00	34.23	1.52
3025	6556	6.369629	TGGTCTTCCTAAAATTTTCTGTGGA	58.630	36.000	6.72	8.44	34.23	4.02
3026	6557	7.010160	TGGTCTTCCTAAAATTTTCTGTGGAT	58.990	34.615	6.72	0.00	34.23	3.41
3089	6622	5.012458	TCCTAGCACAAGATCTAATCATGGG	59.988	44.000	0.00	0.00	34.68	4.00
3198	6734	8.308207	GCTTATCTTACCAGGACTAAGATTAGG	58.692	40.741	18.61	11.25	40.15	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	3.111484	TCATCCACAACACCCAGCTATA	58.889	45.455	0.00	0.00	0.00	1.31
27	28	1.915489	TCATCCACAACACCCAGCTAT	59.085	47.619	0.00	0.00	0.00	2.97
158	159	4.261031	GCGAACACACAACTAAAGGACATT	60.261	41.667	0.00	0.00	0.00	2.71
198	199	1.064166	ACAGAGGCTCAAATCCATGGG	60.064	52.381	18.26	0.00	0.00	4.00
206	207	0.319555	CGACCGAACAGAGGCTCAAA	60.320	55.000	18.26	0.00	0.00	2.69
217	218	0.237235	TGCTCAAATTGCGACCGAAC	59.763	50.000	0.00	0.00	0.00	3.95
223	224	0.250684	TGAGGGTGCTCAAATTGCGA	60.251	50.000	0.00	0.00	0.00	5.10
263	264	2.674852	CACCTCGGATGTGAAAGTCATG	59.325	50.000	7.55	0.00	35.74	3.07
264	265	2.567169	TCACCTCGGATGTGAAAGTCAT	59.433	45.455	12.79	0.00	39.66	3.06
280	281	1.462238	ACACTTGAGGGCCTCACCT	60.462	57.895	35.18	20.04	40.46	4.00
371	379	2.037772	AGTGTGAGCGACTTTTCTCCAT	59.962	45.455	0.00	0.00	0.00	3.41
381	391	3.381949	ACTAAGTTTGAGTGTGAGCGAC	58.618	45.455	0.00	0.00	0.00	5.19
486	496	5.593010	ACTGATTTCTGGTTATCGCTCTAC	58.407	41.667	0.00	0.00	0.00	2.59
488	498	4.744795	ACTGATTTCTGGTTATCGCTCT	57.255	40.909	0.00	0.00	0.00	4.09
502	512	2.761208	CAGGTCCCGACTCTACTGATTT	59.239	50.000	0.00	0.00	0.00	2.17
559	570	8.367911	TGTCACTAATATTGTGAGTTGAGAAGT	58.632	33.333	16.21	0.00	43.90	3.01
583	594	5.296283	TGCATTGCTTTTTGCTAAATTGTGT	59.704	32.000	10.49	0.00	43.37	3.72
675	686	6.548622	ACATTCATTTGATTCAGTATCTGGGG	59.451	38.462	0.00	0.00	34.17	4.96
817	828	7.798596	AGATTTGCTACTCAGGACATTATTG	57.201	36.000	0.00	0.00	0.00	1.90
870	2539	9.855021	CTAAGTTTGGTGGTTTTAGGATAATTG	57.145	33.333	0.00	0.00	0.00	2.32
876	2547	5.757988	ACACTAAGTTTGGTGGTTTTAGGA	58.242	37.500	12.11	0.00	43.06	2.94
883	2554	4.490899	TGTGTACACTAAGTTTGGTGGT	57.509	40.909	25.60	2.31	43.06	4.16
949	2620	5.974158	CAGACCATCGAAGTAATACAGACTG	59.026	44.000	0.00	0.00	0.00	3.51
984	2930	7.420800	GGCAGAACATTTAATCTCATCGATTT	58.579	34.615	0.00	0.00	42.26	2.17
988	2934	4.319046	CCGGCAGAACATTTAATCTCATCG	60.319	45.833	0.00	0.00	0.00	3.84
991	2937	3.938963	GACCGGCAGAACATTTAATCTCA	59.061	43.478	0.00	0.00	0.00	3.27
1019	2965	1.000052	TGCGTGAAGACGGTATGTTGA	60.000	47.619	0.00	0.00	46.20	3.18
1024	2971	0.810031	GGCATGCGTGAAGACGGTAT	60.810	55.000	12.44	0.00	46.20	2.73
1061	3029	1.021202	TTTTGGCAACTGAGACGTGG	58.979	50.000	0.00	0.00	37.61	4.94
1122	3094	2.925170	AGTTCTCTGGCGGCTGGT	60.925	61.111	15.75	0.00	0.00	4.00
1172	3153	2.277404	GAGGAGAGGAGGAGCGGT	59.723	66.667	0.00	0.00	0.00	5.68
1246	3227	2.114616	ACGCCATCTCTCAATTCCTCT	58.885	47.619	0.00	0.00	0.00	3.69
1254	3235	1.741401	CCGCAAACGCCATCTCTCA	60.741	57.895	0.00	0.00	38.22	3.27
1341	3322	1.764054	CTCGGGCTCCTTCCAGGAT	60.764	63.158	0.00	0.00	44.81	3.24
1413	3394	2.835431	AGGATCTGGTCGCGGAGG	60.835	66.667	6.13	0.00	0.00	4.30
1493	3474	1.885871	GTACCTAGGTCGTTGCCGT	59.114	57.895	20.32	0.00	35.01	5.68
1544	3526	5.455872	AGAGACGGAGACCCTATATGAAAA	58.544	41.667	0.00	0.00	0.00	2.29
1562	3544	0.452184	TTCGCCACGATCAGAGAGAC	59.548	55.000	0.00	0.00	35.23	3.36
1563	3545	0.452184	GTTCGCCACGATCAGAGAGA	59.548	55.000	0.00	0.00	35.23	3.10
1564	3546	0.526524	GGTTCGCCACGATCAGAGAG	60.527	60.000	0.00	0.00	35.23	3.20
1565	3547	1.511305	GGTTCGCCACGATCAGAGA	59.489	57.895	0.00	0.00	35.23	3.10
1566	3548	1.874019	CGGTTCGCCACGATCAGAG	60.874	63.158	0.00	0.00	35.23	3.35
1567	3549	2.180769	CGGTTCGCCACGATCAGA	59.819	61.111	0.00	0.00	35.23	3.27
1568	3550	2.829043	TTCCGGTTCGCCACGATCAG	62.829	60.000	0.00	0.00	35.23	2.90
1569	3551	2.829043	CTTCCGGTTCGCCACGATCA	62.829	60.000	0.00	0.00	35.23	2.92
1639	3639	3.741476	GCTTTGCTCAGCGGTGGG	61.741	66.667	15.67	13.40	0.00	4.61
1647	3647	2.574006	ATGGAGAAGTGCTTTGCTCA	57.426	45.000	0.00	0.00	0.00	4.26
1652	3652	6.721704	AGAAAAAGAATGGAGAAGTGCTTT	57.278	33.333	0.00	0.00	0.00	3.51
1763	3770	3.570125	CCATCCTCTATTGTAGTCGCTCA	59.430	47.826	0.00	0.00	0.00	4.26
1889	3917	6.886459	AGGTCACTGTACATCAAAGCAATAAT	59.114	34.615	0.00	0.00	0.00	1.28
2040	4072	3.547746	GGACCAAGTACAAACCACAAGA	58.452	45.455	0.00	0.00	0.00	3.02
2104	4136	7.223584	TGGAAACAGACTCTCATACAATTCAA	58.776	34.615	0.00	0.00	35.01	2.69
2265	4299	0.892755	CTGCCGGTAGTGTAGTTCCA	59.107	55.000	11.99	0.00	0.00	3.53
2300	4335	6.265649	ACATTGTATATACCTTGAGCGTCTCT	59.734	38.462	10.38	0.00	0.00	3.10
2445	4481	9.178758	CTTAGAAGCCATGTAAAAAGGATAGTT	57.821	33.333	0.00	0.00	0.00	2.24
2447	4483	7.643579	GCTTAGAAGCCATGTAAAAAGGATAG	58.356	38.462	2.68	0.00	46.20	2.08
2449	4485	6.456795	GCTTAGAAGCCATGTAAAAAGGAT	57.543	37.500	2.68	0.00	46.20	3.24
2450	4486	5.897377	GCTTAGAAGCCATGTAAAAAGGA	57.103	39.130	2.68	0.00	46.20	3.36
2521	6050	7.038154	TGTGCTTTCAGCTTTGTTATTAACT	57.962	32.000	7.99	0.00	42.97	2.24
2522	6051	7.692908	TTGTGCTTTCAGCTTTGTTATTAAC	57.307	32.000	0.00	0.00	42.97	2.01
2558	6087	3.134442	AGAAAACAATTTTGCTGCCCTCA	59.866	39.130	0.00	0.00	28.21	3.86
2744	6274	3.173965	ACAACCAGTCCTAGTACTGCAT	58.826	45.455	9.86	0.00	44.56	3.96
2768	6298	6.100859	ACTGATGGTCATATCATCTCTTTGGT	59.899	38.462	2.14	0.00	41.01	3.67
2823	6353	5.059833	GCCGAAGACTTCATTCTCCAATAT	58.940	41.667	15.36	0.00	0.00	1.28
2986	6517	2.387757	AGACCAAAGCCACACAACAAT	58.612	42.857	0.00	0.00	0.00	2.71
3125	6658	7.884877	ACATCTCAACAATGAAGAATGGTCTAA	59.115	33.333	0.00	0.00	34.49	2.10
3132	6665	8.900781	CCTATCAACATCTCAACAATGAAGAAT	58.099	33.333	0.00	0.00	34.49	2.40
3137	6670	6.710278	TGTCCTATCAACATCTCAACAATGA	58.290	36.000	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.