Multiple sequence alignment - TraesCS6B01G232600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G232600 chr6B 100.000 5416 0 0 1 5416 388133472 388138887 0.000000e+00 10002.0
1 TraesCS6B01G232600 chr6B 97.716 4684 95 5 1 4674 128900020 128895339 0.000000e+00 8046.0
2 TraesCS6B01G232600 chr6B 95.382 4872 208 9 555 5416 264982531 264977667 0.000000e+00 7734.0
3 TraesCS6B01G232600 chr6B 81.662 758 116 16 4666 5414 606986215 606986958 4.640000e-170 608.0
4 TraesCS6B01G232600 chr6B 98.148 54 1 0 4883 4936 72337412 72337359 1.610000e-15 95.3
5 TraesCS6B01G232600 chr7A 97.865 4684 88 5 1 4674 200017011 200012330 0.000000e+00 8085.0
6 TraesCS6B01G232600 chrUn 97.737 4685 93 5 1 4674 246707033 246702351 0.000000e+00 8052.0
7 TraesCS6B01G232600 chr7B 97.673 4684 97 5 1 4674 742927448 742932129 0.000000e+00 8035.0
8 TraesCS6B01G232600 chr7B 97.481 4684 105 6 1 4674 698136647 698131967 0.000000e+00 7984.0
9 TraesCS6B01G232600 chr5B 97.352 4683 111 6 1 4674 127829034 127824356 0.000000e+00 7949.0
10 TraesCS6B01G232600 chr5B 97.647 3528 73 3 1 3520 695889232 695892757 0.000000e+00 6047.0
11 TraesCS6B01G232600 chr5B 97.345 1356 29 1 1 1349 202676280 202677635 0.000000e+00 2298.0
12 TraesCS6B01G232600 chr6D 96.800 4688 108 8 1 4674 430478240 430473581 0.000000e+00 7788.0
13 TraesCS6B01G232600 chr6D 84.286 140 21 1 4665 4804 370023945 370024083 9.460000e-28 135.0
14 TraesCS6B01G232600 chr2B 95.883 4275 161 6 1153 5416 357331599 357335869 0.000000e+00 6905.0
15 TraesCS6B01G232600 chr2B 96.392 4074 136 7 1345 5416 526495918 526491854 0.000000e+00 6698.0
16 TraesCS6B01G232600 chr2B 95.694 720 25 1 4697 5416 391176537 391177250 0.000000e+00 1153.0
17 TraesCS6B01G232600 chr2B 96.053 76 3 0 4905 4980 134235028 134234953 2.050000e-24 124.0
18 TraesCS6B01G232600 chr2B 95.385 65 3 0 4884 4948 717211061 717211125 2.670000e-18 104.0
19 TraesCS6B01G232600 chr6A 94.480 779 36 2 4638 5416 597223374 597224145 0.000000e+00 1194.0
20 TraesCS6B01G232600 chr3D 82.384 755 108 17 4665 5414 308557205 308556471 7.650000e-178 634.0
21 TraesCS6B01G232600 chr3D 81.926 758 111 19 4665 5414 399731330 399732069 7.710000e-173 617.0
22 TraesCS6B01G232600 chr4D 82.166 757 108 20 4665 5414 450896753 450896017 4.610000e-175 625.0
23 TraesCS6B01G232600 chr2D 83.688 141 21 2 4665 4804 39658053 39658192 1.220000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G232600 chr6B 388133472 388138887 5415 False 10002 10002 100.000 1 5416 1 chr6B.!!$F1 5415
1 TraesCS6B01G232600 chr6B 128895339 128900020 4681 True 8046 8046 97.716 1 4674 1 chr6B.!!$R2 4673
2 TraesCS6B01G232600 chr6B 264977667 264982531 4864 True 7734 7734 95.382 555 5416 1 chr6B.!!$R3 4861
3 TraesCS6B01G232600 chr6B 606986215 606986958 743 False 608 608 81.662 4666 5414 1 chr6B.!!$F2 748
4 TraesCS6B01G232600 chr7A 200012330 200017011 4681 True 8085 8085 97.865 1 4674 1 chr7A.!!$R1 4673
5 TraesCS6B01G232600 chrUn 246702351 246707033 4682 True 8052 8052 97.737 1 4674 1 chrUn.!!$R1 4673
6 TraesCS6B01G232600 chr7B 742927448 742932129 4681 False 8035 8035 97.673 1 4674 1 chr7B.!!$F1 4673
7 TraesCS6B01G232600 chr7B 698131967 698136647 4680 True 7984 7984 97.481 1 4674 1 chr7B.!!$R1 4673
8 TraesCS6B01G232600 chr5B 127824356 127829034 4678 True 7949 7949 97.352 1 4674 1 chr5B.!!$R1 4673
9 TraesCS6B01G232600 chr5B 695889232 695892757 3525 False 6047 6047 97.647 1 3520 1 chr5B.!!$F2 3519
10 TraesCS6B01G232600 chr5B 202676280 202677635 1355 False 2298 2298 97.345 1 1349 1 chr5B.!!$F1 1348
11 TraesCS6B01G232600 chr6D 430473581 430478240 4659 True 7788 7788 96.800 1 4674 1 chr6D.!!$R1 4673
12 TraesCS6B01G232600 chr2B 357331599 357335869 4270 False 6905 6905 95.883 1153 5416 1 chr2B.!!$F1 4263
13 TraesCS6B01G232600 chr2B 526491854 526495918 4064 True 6698 6698 96.392 1345 5416 1 chr2B.!!$R2 4071
14 TraesCS6B01G232600 chr2B 391176537 391177250 713 False 1153 1153 95.694 4697 5416 1 chr2B.!!$F2 719
15 TraesCS6B01G232600 chr6A 597223374 597224145 771 False 1194 1194 94.480 4638 5416 1 chr6A.!!$F1 778
16 TraesCS6B01G232600 chr3D 308556471 308557205 734 True 634 634 82.384 4665 5414 1 chr3D.!!$R1 749
17 TraesCS6B01G232600 chr3D 399731330 399732069 739 False 617 617 81.926 4665 5414 1 chr3D.!!$F1 749
18 TraesCS6B01G232600 chr4D 450896017 450896753 736 True 625 625 82.166 4665 5414 1 chr4D.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 780 0.516001 TGATAGCGCGATCTCGTACC 59.484 55.000 27.21 4.34 42.22 3.34 F
851 852 1.202417 ACCGCGGTATGAGTTCTGATG 60.202 52.381 33.34 0.00 0.00 3.07 F
2455 2469 1.168714 GCGGTGCTCCTTTCTCAAAT 58.831 50.000 2.85 0.00 0.00 2.32 F
2736 2750 0.309302 GCACGTGTATGTGGTTTGCA 59.691 50.000 18.38 0.00 40.26 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1788 0.044092 TCAAGATAGGGTCAGGGGCA 59.956 55.000 0.00 0.0 0.00 5.36 R
2651 2665 1.128200 CAACCTATGGTGGATCCCGA 58.872 55.000 9.90 0.0 35.34 5.14 R
3622 3639 2.100749 CTCGGGCCAAACACTTTTTCTT 59.899 45.455 4.39 0.0 0.00 2.52 R
4512 4534 4.320057 GCTTCAATGGCTCGATATGAAAGG 60.320 45.833 0.00 0.0 30.37 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.172930 GGGCCCTTTCCTTCTACCTTAG 59.827 54.545 17.04 0.00 0.00 2.18
198 199 4.866508 TTTTAGAGGCTCAAAGACGAGA 57.133 40.909 18.26 0.00 34.79 4.04
233 234 3.138304 CAAAAGAACCCATGTGTCTCGA 58.862 45.455 0.00 0.00 0.00 4.04
259 260 2.441750 AGTCTACCCTCTTTTTGTGCCA 59.558 45.455 0.00 0.00 0.00 4.92
419 420 7.401493 AGACCTTCTCTCTTTCAGGATTGATTA 59.599 37.037 0.00 0.00 32.27 1.75
420 421 8.100135 ACCTTCTCTCTTTCAGGATTGATTAT 57.900 34.615 0.00 0.00 32.27 1.28
541 542 1.448985 GCAAACGCTCTAACCCATCA 58.551 50.000 0.00 0.00 0.00 3.07
610 611 4.278419 GCAGAGGCTTTTTCTACAAAAGGA 59.722 41.667 8.70 0.00 37.63 3.36
619 620 3.350219 TCTACAAAAGGATGGGAGCAC 57.650 47.619 0.00 0.00 0.00 4.40
662 663 2.811431 CGTGTGGCCTTCAAGTATTTCA 59.189 45.455 3.32 0.00 0.00 2.69
668 669 6.889177 TGTGGCCTTCAAGTATTTCATATTGA 59.111 34.615 3.32 0.00 0.00 2.57
779 780 0.516001 TGATAGCGCGATCTCGTACC 59.484 55.000 27.21 4.34 42.22 3.34
851 852 1.202417 ACCGCGGTATGAGTTCTGATG 60.202 52.381 33.34 0.00 0.00 3.07
939 940 9.849166 TGGGTTTAGAATTCGAATAAAATGAAC 57.151 29.630 11.83 11.16 0.00 3.18
1046 1047 5.914898 TCGGTAAGACTTGATCTGAATCA 57.085 39.130 0.00 0.00 40.18 2.57
1123 1124 1.641577 GGTCCGTCTTTTCCTGATCG 58.358 55.000 0.00 0.00 0.00 3.69
1456 1464 3.570125 TCGGATAGACTGATTCTGCGAAT 59.430 43.478 3.90 3.90 35.55 3.34
1545 1553 3.615099 GAGACCTTTCTCGCTCGAG 57.385 57.895 8.45 8.45 39.13 4.04
1725 1733 8.994429 TTTTATTCAAAGACACAAAAGCAAGA 57.006 26.923 0.00 0.00 0.00 3.02
1804 1816 5.500234 CTGACCCTATCTTGATTCAAACCA 58.500 41.667 0.01 0.00 0.00 3.67
1839 1851 1.831736 GGTGGAGCCTAGTTGAAGCTA 59.168 52.381 0.00 0.00 36.87 3.32
2042 2055 3.053896 GTTTTGGCGCGCCCTACT 61.054 61.111 44.42 0.00 34.56 2.57
2051 2064 1.670083 GCGCCCTACTCCAACGTTT 60.670 57.895 0.00 0.00 0.00 3.60
2060 2073 4.630069 CCTACTCCAACGTTTGACTATTGG 59.370 45.833 0.00 0.00 42.55 3.16
2203 2217 3.190391 AAAGAAAGGGGGCGGGGT 61.190 61.111 0.00 0.00 0.00 4.95
2396 2410 1.194121 TGCAAGCCTGACCTCAGCTA 61.194 55.000 0.00 0.00 42.47 3.32
2455 2469 1.168714 GCGGTGCTCCTTTCTCAAAT 58.831 50.000 2.85 0.00 0.00 2.32
2590 2604 2.680913 GCGTTGCTGCTTGATCGGT 61.681 57.895 0.00 0.00 0.00 4.69
2618 2632 3.137360 GGAAGATCTCAAAGTATGGGGCT 59.863 47.826 0.00 0.00 0.00 5.19
2651 2665 2.101415 GCTTTGACTTTGCTTTGTCCCT 59.899 45.455 0.00 0.00 32.67 4.20
2664 2678 2.702771 TCCCTCGGGATCCACCAT 59.297 61.111 15.23 0.00 39.76 3.55
2682 2696 2.290896 CCATAGGTTGGGTTTGAGAGCA 60.291 50.000 0.00 0.00 42.33 4.26
2729 2743 2.636768 TCAGAGAGCACGTGTATGTG 57.363 50.000 18.38 11.82 42.81 3.21
2736 2750 0.309302 GCACGTGTATGTGGTTTGCA 59.691 50.000 18.38 0.00 40.26 4.08
2951 2965 7.789202 TCCCAAAAGGACATTCATTCATTTA 57.211 32.000 0.00 0.00 40.93 1.40
2983 2997 2.063266 GCGATCACCACGACTAAAACA 58.937 47.619 0.00 0.00 0.00 2.83
3005 3019 7.294676 ACAAAAACAAGACAAGAAATCAAGC 57.705 32.000 0.00 0.00 0.00 4.01
3075 3089 2.196749 CGATCGGGTGTCTTCATTCAG 58.803 52.381 7.38 0.00 0.00 3.02
3080 3094 1.407437 GGGTGTCTTCATTCAGGCGAT 60.407 52.381 0.00 0.00 0.00 4.58
3376 3390 8.417884 CAAGTTATTTTTACCAAAGAAGTCCCA 58.582 33.333 0.00 0.00 0.00 4.37
3380 3394 3.782656 TTACCAAAGAAGTCCCACTCC 57.217 47.619 0.00 0.00 0.00 3.85
3383 3397 1.279271 CCAAAGAAGTCCCACTCCGAT 59.721 52.381 0.00 0.00 0.00 4.18
3385 3399 1.938585 AAGAAGTCCCACTCCGATGA 58.061 50.000 0.00 0.00 0.00 2.92
3387 3401 1.187087 GAAGTCCCACTCCGATGACT 58.813 55.000 0.00 0.00 39.66 3.41
3527 3541 4.114997 CATTTCGTGGCACCGGGC 62.115 66.667 12.86 6.36 43.74 6.13
3551 3565 1.139058 GCTGAACCATCTACGATGGGT 59.861 52.381 22.76 18.46 42.86 4.51
3597 3611 3.808466 AGAGAATACGCTCTTGCATCA 57.192 42.857 0.00 0.00 42.41 3.07
4204 4226 0.122435 AAAGGGGTGGAGGGGATACA 59.878 55.000 0.00 0.00 39.74 2.29
4238 4260 1.458777 TCGATTAGGGGGTGCGGAT 60.459 57.895 0.00 0.00 0.00 4.18
4314 4336 6.705863 ACCAGAAAATTGATTATGCTCCTC 57.294 37.500 0.00 0.00 0.00 3.71
4373 4395 5.384063 AAGTGCGGATCTCATATAGTCAG 57.616 43.478 0.00 0.00 0.00 3.51
4512 4534 1.797025 AAAGTTGTAGAGCTGGTCGC 58.203 50.000 0.00 0.00 39.57 5.19
4881 4906 1.068541 GCCCTTTTCGAAGAAATGCGT 60.069 47.619 0.00 0.00 45.90 5.24
5041 5067 3.135994 GAGAGCGTTAACCAACAAAGGA 58.864 45.455 0.00 0.00 34.05 3.36
5044 5070 4.060205 GAGCGTTAACCAACAAAGGAGTA 58.940 43.478 0.00 0.00 34.05 2.59
5149 5175 8.623903 CAATAAAGGAATTTCGGATTGATGAGA 58.376 33.333 3.46 0.00 0.00 3.27
5248 5274 8.458573 TGATGTTGTTAAAAACCAGTGTATCT 57.541 30.769 6.05 0.00 0.00 1.98
5250 5276 7.633193 TGTTGTTAAAAACCAGTGTATCTGT 57.367 32.000 6.05 0.00 42.19 3.41
5259 5285 4.604156 ACCAGTGTATCTGTGAGATCTCA 58.396 43.478 21.67 21.67 42.19 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.057245 GGAAATTCACAGCAGGAAAGACC 60.057 47.826 0.00 0.00 39.35 3.85
198 199 5.221521 GGGTTCTTTTGCTTCCTTCAAAGAT 60.222 40.000 0.00 0.00 35.21 2.40
233 234 5.241728 GCACAAAAAGAGGGTAGACTTCATT 59.758 40.000 0.00 0.00 0.00 2.57
259 260 6.966751 TGAATTGGATCTCATTCTTCTTCCT 58.033 36.000 14.62 0.00 0.00 3.36
419 420 2.113807 TGCTATCAGGCAGTGAGTGAT 58.886 47.619 11.24 11.24 39.07 3.06
420 421 1.560505 TGCTATCAGGCAGTGAGTGA 58.439 50.000 0.00 0.00 39.07 3.41
541 542 4.051661 TCCAATTTGGATGGAGCTTCTT 57.948 40.909 14.24 0.00 42.67 2.52
610 611 3.091545 CACCTACATTTTGTGCTCCCAT 58.908 45.455 0.00 0.00 0.00 4.00
619 620 4.853196 CGCAATTGACTCACCTACATTTTG 59.147 41.667 10.34 0.00 0.00 2.44
668 669 7.068103 TGTTTGGATGCCGATCTAATATTGTTT 59.932 33.333 0.00 0.00 29.90 2.83
802 803 0.322456 AAGGCCGCATGCAAGTTCTA 60.322 50.000 19.57 0.00 43.89 2.10
851 852 1.068588 GCCCCCAAAACAAAGTCTGAC 59.931 52.381 0.00 0.00 0.00 3.51
887 888 2.767505 GTCCACAGTTTCCTTGTCGAT 58.232 47.619 0.00 0.00 0.00 3.59
935 936 6.288941 TCTATTTGTTCGATAGGGTGTTCA 57.711 37.500 0.00 0.00 0.00 3.18
939 940 5.531122 TCCTCTATTTGTTCGATAGGGTG 57.469 43.478 0.00 0.00 0.00 4.61
1046 1047 4.466370 TGAACCGACTTGGATCTGAACTAT 59.534 41.667 0.00 0.00 40.14 2.12
1147 1148 1.552337 ACATCTGCAACGTCCTCTCAT 59.448 47.619 0.00 0.00 0.00 2.90
1208 1209 0.551879 TTTGGTCCCGGGTTTCTTCA 59.448 50.000 22.86 8.14 0.00 3.02
1431 1439 4.038042 TCGCAGAATCAGTCTATCCGAATT 59.962 41.667 0.00 0.00 33.56 2.17
1432 1440 3.570125 TCGCAGAATCAGTCTATCCGAAT 59.430 43.478 0.00 0.00 33.56 3.34
1456 1464 0.918799 TTGATTCCTGGGGCTAGGCA 60.919 55.000 19.14 0.00 37.76 4.75
1725 1733 4.040461 TCCGAGAGTCCAATCTCTTTTGTT 59.960 41.667 2.79 0.00 43.74 2.83
1776 1788 0.044092 TCAAGATAGGGTCAGGGGCA 59.956 55.000 0.00 0.00 0.00 5.36
1839 1851 8.843308 TGGATTCCCATTTATTCTTTGAAGAT 57.157 30.769 0.00 0.00 37.58 2.40
2042 2055 3.134574 AGCCAATAGTCAAACGTTGGA 57.865 42.857 0.00 0.00 39.48 3.53
2131 2145 3.283259 TCTGGATAGAGTCTCGCTTCA 57.717 47.619 0.00 0.00 0.00 3.02
2203 2217 5.038033 GCGGTTGTCATTTTCAAGTAAACA 58.962 37.500 0.00 0.00 0.00 2.83
2396 2410 5.242393 CGCCCTGAATGAATAAGAAATGGAT 59.758 40.000 0.00 0.00 0.00 3.41
2471 2485 5.313772 TGGTCTTCCCTTATTTTCCCTAACA 59.686 40.000 0.00 0.00 0.00 2.41
2590 2604 2.921221 ACTTTGAGATCTTCCTCCCCA 58.079 47.619 0.00 0.00 32.32 4.96
2618 2632 3.334583 AGTCAAAGCGCTTGATCCTTA 57.665 42.857 25.80 0.00 45.74 2.69
2651 2665 1.128200 CAACCTATGGTGGATCCCGA 58.872 55.000 9.90 0.00 35.34 5.14
2664 2678 2.054799 ACTGCTCTCAAACCCAACCTA 58.945 47.619 0.00 0.00 0.00 3.08
2682 2696 3.639094 GCTAGATAGTCACCCATCACACT 59.361 47.826 0.00 0.00 0.00 3.55
2729 2743 1.327303 TCCATTCACCAGTGCAAACC 58.673 50.000 0.00 0.00 0.00 3.27
2736 2750 1.384191 GGGGCTTCCATTCACCAGT 59.616 57.895 0.00 0.00 35.00 4.00
2864 2878 3.426695 CGAGTTTCGTAGGTGGACGTATT 60.427 47.826 0.00 0.00 43.39 1.89
2951 2965 0.463833 GTGATCGCCCGGGAAGAAAT 60.464 55.000 29.31 8.56 0.00 2.17
2983 2997 5.817296 GGGCTTGATTTCTTGTCTTGTTTTT 59.183 36.000 0.00 0.00 0.00 1.94
3005 3019 1.208776 CCCTTTTCCTGTAGTACGGGG 59.791 57.143 25.06 15.23 44.85 5.73
3075 3089 1.112113 TCTTCCTCTGTACCATCGCC 58.888 55.000 0.00 0.00 0.00 5.54
3080 3094 3.551454 CGTTTCGTTCTTCCTCTGTACCA 60.551 47.826 0.00 0.00 0.00 3.25
3385 3399 6.403418 CCTTTTTAGTAGATGACTCGTCGAGT 60.403 42.308 27.28 27.28 46.42 4.18
3387 3401 5.645067 TCCTTTTTAGTAGATGACTCGTCGA 59.355 40.000 0.00 0.00 39.81 4.20
3429 3443 5.368145 CATGACCGAATAATTCAAGGAGGA 58.632 41.667 0.00 0.00 0.00 3.71
3551 3565 2.660064 GCTTCCTCCCTTCGCTCCA 61.660 63.158 0.00 0.00 0.00 3.86
3622 3639 2.100749 CTCGGGCCAAACACTTTTTCTT 59.899 45.455 4.39 0.00 0.00 2.52
3947 3969 5.452917 CCCGTACGGAATTATCCTCTTTCTT 60.453 44.000 35.41 0.00 44.17 2.52
4032 4054 8.652810 TTTACCGACTCAATTAAGGTATTAGC 57.347 34.615 0.00 0.00 37.31 3.09
4204 4226 6.542370 CCCTAATCGACCAGAACAACAAATAT 59.458 38.462 0.00 0.00 0.00 1.28
4238 4260 5.784578 TTCCGCATTCAGTTCTAGCTATA 57.215 39.130 0.00 0.00 0.00 1.31
4301 4323 6.080682 AGATACTTCCAGAGGAGCATAATCA 58.919 40.000 0.00 0.00 31.21 2.57
4314 4336 4.813161 TCCGTTACGAGTAGATACTTCCAG 59.187 45.833 6.24 0.00 36.50 3.86
4373 4395 6.100668 GGATATAGCACGTCCCTTCTTATTC 58.899 44.000 0.00 0.00 0.00 1.75
4512 4534 4.320057 GCTTCAATGGCTCGATATGAAAGG 60.320 45.833 0.00 0.00 30.37 3.11
4732 4757 7.795734 CGCAATCACAATGAGAACTATTATCAC 59.204 37.037 0.00 0.00 0.00 3.06
4881 4906 0.682852 CCCGTCCACTCAAGGTGTTA 59.317 55.000 0.00 0.00 43.94 2.41
5004 5030 3.563390 CGCTCTCACTATCACTCTCATCA 59.437 47.826 0.00 0.00 0.00 3.07
5041 5067 1.395826 GGAGGCACATCGCTCCTACT 61.396 60.000 0.00 0.00 41.91 2.57
5044 5070 1.557269 AAAGGAGGCACATCGCTCCT 61.557 55.000 0.00 0.00 44.98 3.69
5248 5274 6.396450 CATGAAAGTTCTCTGAGATCTCACA 58.604 40.000 21.67 14.27 35.46 3.58
5250 5276 5.046807 TGCATGAAAGTTCTCTGAGATCTCA 60.047 40.000 23.75 23.75 38.06 3.27
5259 5285 3.496130 CGTCTGTTGCATGAAAGTTCTCT 59.504 43.478 0.00 0.00 0.00 3.10
5306 5332 1.270358 GCCCTTCAGTATCATCCGTCC 60.270 57.143 0.00 0.00 0.00 4.79
5316 5342 3.646162 TGACTCTTCTTTGCCCTTCAGTA 59.354 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.