Multiple sequence alignment - TraesCS6B01G228900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G228900 chr6B 100.000 2399 0 0 451 2849 364901172 364903570 0.000000e+00 4431.0
1 TraesCS6B01G228900 chr6B 96.902 1033 21 3 853 1874 507620524 507621556 0.000000e+00 1720.0
2 TraesCS6B01G228900 chr6B 100.000 134 0 0 1 134 364900722 364900855 6.100000e-62 248.0
3 TraesCS6B01G228900 chr6B 93.860 114 5 2 2083 2195 507621901 507622013 1.360000e-38 171.0
4 TraesCS6B01G228900 chr6B 95.385 65 2 1 1991 2054 507621840 507621904 5.020000e-18 102.0
5 TraesCS6B01G228900 chr6B 91.176 68 6 0 40 107 101725008 101725075 3.020000e-15 93.5
6 TraesCS6B01G228900 chr6B 100.000 30 0 0 1 30 594672845 594672874 3.970000e-04 56.5
7 TraesCS6B01G228900 chr6A 96.968 1649 28 8 810 2445 306047776 306046137 0.000000e+00 2748.0
8 TraesCS6B01G228900 chr6A 85.714 56 8 0 2454 2509 593460813 593460868 3.070000e-05 60.2
9 TraesCS6B01G228900 chr6D 96.305 1651 31 14 810 2442 237427274 237428912 0.000000e+00 2684.0
10 TraesCS6B01G228900 chr6D 97.483 1033 15 3 853 1874 316825836 316824804 0.000000e+00 1753.0
11 TraesCS6B01G228900 chr6D 92.665 409 16 6 2442 2849 237428874 237429269 6.840000e-161 577.0
12 TraesCS6B01G228900 chr6D 94.737 114 5 1 2083 2195 316824460 316824347 2.920000e-40 176.0
13 TraesCS6B01G228900 chr6D 93.750 96 6 0 34 129 455420615 455420710 8.230000e-31 145.0
14 TraesCS6B01G228900 chr6D 94.203 69 3 1 1990 2057 316824522 316824454 1.400000e-18 104.0
15 TraesCS6B01G228900 chr6D 96.000 50 2 0 1897 1946 316824805 316824756 6.540000e-12 82.4
16 TraesCS6B01G228900 chr2B 82.976 840 131 12 1009 1842 491355103 491354270 0.000000e+00 749.0
17 TraesCS6B01G228900 chr2B 86.792 53 7 0 2457 2509 281928378 281928326 3.070000e-05 60.2
18 TraesCS6B01G228900 chr2B 85.714 56 8 0 2454 2509 534669378 534669433 3.070000e-05 60.2
19 TraesCS6B01G228900 chr2B 86.792 53 7 0 2457 2509 740773583 740773531 3.070000e-05 60.2
20 TraesCS6B01G228900 chr2D 82.857 840 132 12 1009 1842 419052017 419051184 0.000000e+00 743.0
21 TraesCS6B01G228900 chr2D 84.718 373 45 8 451 812 538731718 538731347 2.090000e-96 363.0
22 TraesCS6B01G228900 chr2D 93.069 101 7 0 34 134 582692135 582692235 6.360000e-32 148.0
23 TraesCS6B01G228900 chr2A 82.304 842 133 15 1009 1842 570724218 570725051 0.000000e+00 715.0
24 TraesCS6B01G228900 chr2A 85.405 370 42 5 451 810 445335378 445335745 9.640000e-100 374.0
25 TraesCS6B01G228900 chr1B 85.135 370 43 7 451 810 229298618 229298251 4.480000e-98 368.0
26 TraesCS6B01G228900 chr5D 88.449 303 34 1 451 753 496088957 496088656 5.800000e-97 364.0
27 TraesCS6B01G228900 chr1D 84.800 375 41 8 451 812 256585328 256584957 2.090000e-96 363.0
28 TraesCS6B01G228900 chr4D 84.533 375 47 4 451 815 508594637 508594264 7.500000e-96 361.0
29 TraesCS6B01G228900 chr4D 98.507 67 1 0 1621 1687 177490196 177490130 4.990000e-23 119.0
30 TraesCS6B01G228900 chr5B 84.409 372 47 4 451 812 458737983 458737613 3.490000e-94 355.0
31 TraesCS6B01G228900 chr7B 84.384 365 44 7 451 805 132968948 132969309 2.100000e-91 346.0
32 TraesCS6B01G228900 chr7B 87.291 299 37 1 451 749 95422878 95423175 9.780000e-90 340.0
33 TraesCS6B01G228900 chr7B 97.015 67 2 0 1621 1687 348950684 348950750 2.320000e-21 113.0
34 TraesCS6B01G228900 chr7B 100.000 30 0 0 1 30 516917359 516917330 3.970000e-04 56.5
35 TraesCS6B01G228900 chr4B 89.109 101 11 0 34 134 501353507 501353407 2.980000e-25 126.0
36 TraesCS6B01G228900 chr4B 86.792 53 7 0 2457 2509 613035798 613035746 3.070000e-05 60.2
37 TraesCS6B01G228900 chr4B 100.000 28 0 0 1 28 585740537 585740510 5.000000e-03 52.8
38 TraesCS6B01G228900 chr7D 86.792 53 7 0 2457 2509 40649820 40649768 3.070000e-05 60.2
39 TraesCS6B01G228900 chr5A 86.792 53 7 0 2457 2509 627021591 627021539 3.070000e-05 60.2
40 TraesCS6B01G228900 chr5A 100.000 29 0 0 2 30 330524259 330524287 1.000000e-03 54.7
41 TraesCS6B01G228900 chr4A 86.792 53 7 0 2457 2509 2561424 2561372 3.070000e-05 60.2
42 TraesCS6B01G228900 chr4A 86.792 53 7 0 2457 2509 618576408 618576356 3.070000e-05 60.2
43 TraesCS6B01G228900 chr3B 100.000 28 0 0 1 28 750311753 750311780 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G228900 chr6B 364900722 364903570 2848 False 2339.500000 4431 100.000000 1 2849 2 chr6B.!!$F3 2848
1 TraesCS6B01G228900 chr6B 507620524 507622013 1489 False 664.333333 1720 95.382333 853 2195 3 chr6B.!!$F4 1342
2 TraesCS6B01G228900 chr6A 306046137 306047776 1639 True 2748.000000 2748 96.968000 810 2445 1 chr6A.!!$R1 1635
3 TraesCS6B01G228900 chr6D 237427274 237429269 1995 False 1630.500000 2684 94.485000 810 2849 2 chr6D.!!$F2 2039
4 TraesCS6B01G228900 chr6D 316824347 316825836 1489 True 528.850000 1753 95.605750 853 2195 4 chr6D.!!$R1 1342
5 TraesCS6B01G228900 chr2B 491354270 491355103 833 True 749.000000 749 82.976000 1009 1842 1 chr2B.!!$R2 833
6 TraesCS6B01G228900 chr2D 419051184 419052017 833 True 743.000000 743 82.857000 1009 1842 1 chr2D.!!$R1 833
7 TraesCS6B01G228900 chr2A 570724218 570725051 833 False 715.000000 715 82.304000 1009 1842 1 chr2A.!!$F2 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 782 0.026674 GTTATTTTACGCGTCGGGGC 59.973 55.0 18.63 0.0 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2495 0.458197 GTGCAATATTTGGCTGCGCA 60.458 50.0 10.98 10.98 44.16 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.984508 TCTTTCAGTTCTCGTCTTCGT 57.015 42.857 0.00 0.00 38.33 3.85
21 22 3.629058 TCTTTCAGTTCTCGTCTTCGTG 58.371 45.455 0.00 0.00 38.33 4.35
22 23 1.767289 TTCAGTTCTCGTCTTCGTGC 58.233 50.000 0.00 0.00 38.33 5.34
23 24 0.952280 TCAGTTCTCGTCTTCGTGCT 59.048 50.000 0.00 0.00 38.33 4.40
24 25 1.069159 TCAGTTCTCGTCTTCGTGCTC 60.069 52.381 0.00 0.00 38.33 4.26
25 26 0.241481 AGTTCTCGTCTTCGTGCTCC 59.759 55.000 0.00 0.00 38.33 4.70
26 27 0.241481 GTTCTCGTCTTCGTGCTCCT 59.759 55.000 0.00 0.00 38.33 3.69
27 28 0.959553 TTCTCGTCTTCGTGCTCCTT 59.040 50.000 0.00 0.00 38.33 3.36
28 29 0.522180 TCTCGTCTTCGTGCTCCTTC 59.478 55.000 0.00 0.00 38.33 3.46
29 30 0.241213 CTCGTCTTCGTGCTCCTTCA 59.759 55.000 0.00 0.00 38.33 3.02
30 31 0.888619 TCGTCTTCGTGCTCCTTCAT 59.111 50.000 0.00 0.00 38.33 2.57
31 32 0.994995 CGTCTTCGTGCTCCTTCATG 59.005 55.000 0.00 0.00 0.00 3.07
32 33 1.402852 CGTCTTCGTGCTCCTTCATGA 60.403 52.381 0.00 0.00 0.00 3.07
33 34 1.996191 GTCTTCGTGCTCCTTCATGAC 59.004 52.381 0.00 0.00 32.23 3.06
34 35 1.618343 TCTTCGTGCTCCTTCATGACA 59.382 47.619 0.00 0.00 32.23 3.58
35 36 1.728971 CTTCGTGCTCCTTCATGACAC 59.271 52.381 0.00 0.00 32.23 3.67
36 37 2.073307 CGTGCTCCTTCATGACACG 58.927 57.895 17.77 17.77 46.57 4.49
37 38 0.667487 CGTGCTCCTTCATGACACGT 60.667 55.000 21.25 0.00 46.56 4.49
38 39 0.792640 GTGCTCCTTCATGACACGTG 59.207 55.000 15.48 15.48 0.00 4.49
39 40 0.950555 TGCTCCTTCATGACACGTGC 60.951 55.000 17.22 9.30 0.00 5.34
40 41 0.950555 GCTCCTTCATGACACGTGCA 60.951 55.000 17.22 15.09 0.00 4.57
41 42 0.792640 CTCCTTCATGACACGTGCAC 59.207 55.000 17.22 6.82 0.00 4.57
42 43 0.943835 TCCTTCATGACACGTGCACG 60.944 55.000 35.99 35.99 46.33 5.34
52 53 3.405464 CGTGCACGTCAACCAACT 58.595 55.556 30.50 0.00 34.11 3.16
53 54 2.595707 CGTGCACGTCAACCAACTA 58.404 52.632 30.50 0.00 34.11 2.24
54 55 1.144969 CGTGCACGTCAACCAACTAT 58.855 50.000 30.50 0.00 34.11 2.12
55 56 1.136363 CGTGCACGTCAACCAACTATG 60.136 52.381 30.50 0.00 34.11 2.23
56 57 0.871722 TGCACGTCAACCAACTATGC 59.128 50.000 0.00 0.00 32.51 3.14
57 58 0.179225 GCACGTCAACCAACTATGCG 60.179 55.000 0.00 0.00 0.00 4.73
58 59 1.144969 CACGTCAACCAACTATGCGT 58.855 50.000 0.00 0.00 32.42 5.24
59 60 2.330286 CACGTCAACCAACTATGCGTA 58.670 47.619 0.00 0.00 31.56 4.42
60 61 2.344441 CACGTCAACCAACTATGCGTAG 59.656 50.000 11.54 11.54 31.56 3.51
73 74 3.850923 CGTAGCGCTCGGAACAAA 58.149 55.556 16.34 0.00 0.00 2.83
74 75 2.369870 CGTAGCGCTCGGAACAAAT 58.630 52.632 16.34 0.00 0.00 2.32
75 76 0.297820 CGTAGCGCTCGGAACAAATC 59.702 55.000 16.34 0.00 0.00 2.17
76 77 1.355971 GTAGCGCTCGGAACAAATCA 58.644 50.000 16.34 0.00 0.00 2.57
77 78 1.060698 GTAGCGCTCGGAACAAATCAC 59.939 52.381 16.34 0.00 0.00 3.06
78 79 0.602638 AGCGCTCGGAACAAATCACA 60.603 50.000 2.64 0.00 0.00 3.58
79 80 0.237235 GCGCTCGGAACAAATCACAA 59.763 50.000 0.00 0.00 0.00 3.33
80 81 1.725931 GCGCTCGGAACAAATCACAAG 60.726 52.381 0.00 0.00 0.00 3.16
81 82 1.725931 CGCTCGGAACAAATCACAAGC 60.726 52.381 0.00 0.00 0.00 4.01
82 83 1.266718 GCTCGGAACAAATCACAAGCA 59.733 47.619 0.00 0.00 0.00 3.91
83 84 2.287547 GCTCGGAACAAATCACAAGCAA 60.288 45.455 0.00 0.00 0.00 3.91
84 85 3.795150 GCTCGGAACAAATCACAAGCAAA 60.795 43.478 0.00 0.00 0.00 3.68
85 86 3.701241 TCGGAACAAATCACAAGCAAAC 58.299 40.909 0.00 0.00 0.00 2.93
86 87 3.129462 TCGGAACAAATCACAAGCAAACA 59.871 39.130 0.00 0.00 0.00 2.83
87 88 3.242712 CGGAACAAATCACAAGCAAACAC 59.757 43.478 0.00 0.00 0.00 3.32
88 89 4.432712 GGAACAAATCACAAGCAAACACT 58.567 39.130 0.00 0.00 0.00 3.55
89 90 4.869861 GGAACAAATCACAAGCAAACACTT 59.130 37.500 0.00 0.00 0.00 3.16
90 91 6.039616 GGAACAAATCACAAGCAAACACTTA 58.960 36.000 0.00 0.00 0.00 2.24
91 92 6.701400 GGAACAAATCACAAGCAAACACTTAT 59.299 34.615 0.00 0.00 0.00 1.73
92 93 7.096065 GGAACAAATCACAAGCAAACACTTATC 60.096 37.037 0.00 0.00 0.00 1.75
93 94 5.914635 ACAAATCACAAGCAAACACTTATCG 59.085 36.000 0.00 0.00 0.00 2.92
94 95 4.685169 ATCACAAGCAAACACTTATCGG 57.315 40.909 0.00 0.00 0.00 4.18
95 96 2.225491 TCACAAGCAAACACTTATCGGC 59.775 45.455 0.00 0.00 0.00 5.54
96 97 2.031245 CACAAGCAAACACTTATCGGCA 60.031 45.455 0.00 0.00 0.00 5.69
97 98 2.226437 ACAAGCAAACACTTATCGGCAG 59.774 45.455 0.00 0.00 0.00 4.85
98 99 0.804989 AGCAAACACTTATCGGCAGC 59.195 50.000 0.00 0.00 0.00 5.25
99 100 0.804989 GCAAACACTTATCGGCAGCT 59.195 50.000 0.00 0.00 0.00 4.24
100 101 1.202076 GCAAACACTTATCGGCAGCTC 60.202 52.381 0.00 0.00 0.00 4.09
101 102 1.061131 CAAACACTTATCGGCAGCTCG 59.939 52.381 0.00 0.00 0.00 5.03
102 103 0.246635 AACACTTATCGGCAGCTCGT 59.753 50.000 0.00 0.00 0.00 4.18
103 104 0.458543 ACACTTATCGGCAGCTCGTG 60.459 55.000 0.00 0.00 0.00 4.35
104 105 1.141881 ACTTATCGGCAGCTCGTGG 59.858 57.895 0.00 0.00 0.00 4.94
105 106 1.592669 CTTATCGGCAGCTCGTGGG 60.593 63.158 0.00 0.00 0.00 4.61
106 107 3.733344 TTATCGGCAGCTCGTGGGC 62.733 63.158 0.00 0.00 0.00 5.36
469 470 1.767289 GTGTAGCGTATCGATGGTGG 58.233 55.000 8.54 0.00 0.00 4.61
470 471 1.335810 GTGTAGCGTATCGATGGTGGA 59.664 52.381 8.54 0.00 0.00 4.02
471 472 1.607148 TGTAGCGTATCGATGGTGGAG 59.393 52.381 8.54 0.00 0.00 3.86
472 473 1.068472 GTAGCGTATCGATGGTGGAGG 60.068 57.143 8.54 0.00 0.00 4.30
473 474 1.006102 GCGTATCGATGGTGGAGGG 60.006 63.158 8.54 0.00 0.00 4.30
474 475 1.745320 GCGTATCGATGGTGGAGGGT 61.745 60.000 8.54 0.00 0.00 4.34
475 476 0.032130 CGTATCGATGGTGGAGGGTG 59.968 60.000 8.54 0.00 0.00 4.61
476 477 0.393077 GTATCGATGGTGGAGGGTGG 59.607 60.000 8.54 0.00 0.00 4.61
477 478 0.762842 TATCGATGGTGGAGGGTGGG 60.763 60.000 8.54 0.00 0.00 4.61
478 479 3.797353 CGATGGTGGAGGGTGGGG 61.797 72.222 0.00 0.00 0.00 4.96
479 480 3.420482 GATGGTGGAGGGTGGGGG 61.420 72.222 0.00 0.00 0.00 5.40
480 481 3.962530 GATGGTGGAGGGTGGGGGA 62.963 68.421 0.00 0.00 0.00 4.81
481 482 4.995058 TGGTGGAGGGTGGGGGAC 62.995 72.222 0.00 0.00 0.00 4.46
511 512 2.588877 CGATTCCGCCCGCAGATT 60.589 61.111 0.00 0.00 0.00 2.40
512 513 2.180204 CGATTCCGCCCGCAGATTT 61.180 57.895 0.00 0.00 0.00 2.17
513 514 1.356624 GATTCCGCCCGCAGATTTG 59.643 57.895 0.00 0.00 0.00 2.32
514 515 2.063541 GATTCCGCCCGCAGATTTGG 62.064 60.000 0.00 0.00 0.00 3.28
519 520 2.749839 CCCGCAGATTTGGCCGAA 60.750 61.111 8.18 8.18 0.00 4.30
520 521 2.339556 CCCGCAGATTTGGCCGAAA 61.340 57.895 10.16 6.16 0.00 3.46
521 522 1.666209 CCCGCAGATTTGGCCGAAAT 61.666 55.000 10.16 10.96 36.94 2.17
526 527 3.622459 GATTTGGCCGAAATCACCG 57.378 52.632 24.13 0.00 46.51 4.94
527 528 0.100503 GATTTGGCCGAAATCACCGG 59.899 55.000 24.13 0.00 46.51 5.28
547 548 3.857038 GCGGATGGGCGGAACCTA 61.857 66.667 0.00 0.00 39.10 3.08
548 549 3.148084 CGGATGGGCGGAACCTAT 58.852 61.111 0.00 0.00 43.61 2.57
549 550 1.301716 CGGATGGGCGGAACCTATG 60.302 63.158 0.00 0.00 40.33 2.23
550 551 1.073199 GGATGGGCGGAACCTATGG 59.927 63.158 0.00 0.00 40.33 2.74
551 552 1.600916 GATGGGCGGAACCTATGGC 60.601 63.158 0.00 0.00 40.33 4.40
552 553 3.476031 ATGGGCGGAACCTATGGCG 62.476 63.158 0.00 0.00 38.42 5.69
553 554 4.929707 GGGCGGAACCTATGGCGG 62.930 72.222 0.00 0.00 39.10 6.13
554 555 4.929707 GGCGGAACCTATGGCGGG 62.930 72.222 0.00 0.00 34.51 6.13
556 557 4.169696 CGGAACCTATGGCGGGCA 62.170 66.667 6.74 6.74 0.00 5.36
557 558 2.203209 GGAACCTATGGCGGGCAG 60.203 66.667 10.83 0.00 0.00 4.85
558 559 2.590092 GAACCTATGGCGGGCAGT 59.410 61.111 10.83 0.00 0.00 4.40
559 560 1.819632 GAACCTATGGCGGGCAGTG 60.820 63.158 10.83 5.06 0.00 3.66
560 561 3.344137 AACCTATGGCGGGCAGTGG 62.344 63.158 19.10 19.10 0.00 4.00
562 563 4.488136 CTATGGCGGGCAGTGGCA 62.488 66.667 19.48 0.00 46.52 4.92
563 564 4.488136 TATGGCGGGCAGTGGCAG 62.488 66.667 19.48 15.97 45.62 4.85
569 570 4.748144 GGGCAGTGGCAGAAGGGG 62.748 72.222 19.48 0.00 43.71 4.79
570 571 4.748144 GGCAGTGGCAGAAGGGGG 62.748 72.222 12.58 0.00 43.71 5.40
571 572 3.971702 GCAGTGGCAGAAGGGGGT 61.972 66.667 0.00 0.00 40.72 4.95
572 573 2.034687 CAGTGGCAGAAGGGGGTG 59.965 66.667 0.00 0.00 0.00 4.61
573 574 3.260100 AGTGGCAGAAGGGGGTGG 61.260 66.667 0.00 0.00 0.00 4.61
574 575 4.366684 GTGGCAGAAGGGGGTGGG 62.367 72.222 0.00 0.00 0.00 4.61
575 576 4.608514 TGGCAGAAGGGGGTGGGA 62.609 66.667 0.00 0.00 0.00 4.37
576 577 3.264845 GGCAGAAGGGGGTGGGAA 61.265 66.667 0.00 0.00 0.00 3.97
577 578 2.851045 GCAGAAGGGGGTGGGAAA 59.149 61.111 0.00 0.00 0.00 3.13
578 579 1.155155 GCAGAAGGGGGTGGGAAAA 59.845 57.895 0.00 0.00 0.00 2.29
579 580 0.900182 GCAGAAGGGGGTGGGAAAAG 60.900 60.000 0.00 0.00 0.00 2.27
580 581 0.251787 CAGAAGGGGGTGGGAAAAGG 60.252 60.000 0.00 0.00 0.00 3.11
581 582 1.078528 GAAGGGGGTGGGAAAAGGG 59.921 63.158 0.00 0.00 0.00 3.95
582 583 3.174319 AAGGGGGTGGGAAAAGGGC 62.174 63.158 0.00 0.00 0.00 5.19
592 593 4.966787 AAAAGGGCGCGGGCTGAA 62.967 61.111 24.48 0.00 39.81 3.02
593 594 4.966787 AAAGGGCGCGGGCTGAAA 62.967 61.111 24.48 0.00 39.81 2.69
594 595 4.740822 AAGGGCGCGGGCTGAAAT 62.741 61.111 24.48 3.82 39.81 2.17
597 598 4.179579 GGCGCGGGCTGAAATGTC 62.180 66.667 24.48 0.53 39.81 3.06
598 599 4.179579 GCGCGGGCTGAAATGTCC 62.180 66.667 18.33 0.00 35.83 4.02
599 600 3.508840 CGCGGGCTGAAATGTCCC 61.509 66.667 0.00 0.00 36.68 4.46
600 601 2.044946 GCGGGCTGAAATGTCCCT 60.045 61.111 0.00 0.00 37.89 4.20
601 602 2.115291 GCGGGCTGAAATGTCCCTC 61.115 63.158 0.00 0.00 37.89 4.30
602 603 1.452108 CGGGCTGAAATGTCCCTCC 60.452 63.158 0.00 0.00 37.89 4.30
603 604 1.076705 GGGCTGAAATGTCCCTCCC 60.077 63.158 0.00 0.00 37.08 4.30
604 605 1.452108 GGCTGAAATGTCCCTCCCG 60.452 63.158 0.00 0.00 0.00 5.14
605 606 2.115291 GCTGAAATGTCCCTCCCGC 61.115 63.158 0.00 0.00 0.00 6.13
606 607 1.452108 CTGAAATGTCCCTCCCGCC 60.452 63.158 0.00 0.00 0.00 6.13
607 608 2.196997 CTGAAATGTCCCTCCCGCCA 62.197 60.000 0.00 0.00 0.00 5.69
608 609 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
609 610 1.304134 AAATGTCCCTCCCGCCAAC 60.304 57.895 0.00 0.00 0.00 3.77
610 611 2.781431 AAATGTCCCTCCCGCCAACC 62.781 60.000 0.00 0.00 0.00 3.77
612 613 4.717313 GTCCCTCCCGCCAACCAC 62.717 72.222 0.00 0.00 0.00 4.16
613 614 4.974438 TCCCTCCCGCCAACCACT 62.974 66.667 0.00 0.00 0.00 4.00
614 615 3.966543 CCCTCCCGCCAACCACTT 61.967 66.667 0.00 0.00 0.00 3.16
615 616 2.359975 CCTCCCGCCAACCACTTC 60.360 66.667 0.00 0.00 0.00 3.01
616 617 2.429930 CTCCCGCCAACCACTTCA 59.570 61.111 0.00 0.00 0.00 3.02
617 618 1.966451 CTCCCGCCAACCACTTCAC 60.966 63.158 0.00 0.00 0.00 3.18
618 619 2.113139 CCCGCCAACCACTTCACT 59.887 61.111 0.00 0.00 0.00 3.41
619 620 2.260869 CCCGCCAACCACTTCACTG 61.261 63.158 0.00 0.00 0.00 3.66
620 621 2.639286 CGCCAACCACTTCACTGC 59.361 61.111 0.00 0.00 0.00 4.40
621 622 2.639286 GCCAACCACTTCACTGCG 59.361 61.111 0.00 0.00 0.00 5.18
622 623 1.891919 GCCAACCACTTCACTGCGA 60.892 57.895 0.00 0.00 0.00 5.10
623 624 1.237285 GCCAACCACTTCACTGCGAT 61.237 55.000 0.00 0.00 0.00 4.58
624 625 1.943968 GCCAACCACTTCACTGCGATA 60.944 52.381 0.00 0.00 0.00 2.92
625 626 1.732259 CCAACCACTTCACTGCGATAC 59.268 52.381 0.00 0.00 0.00 2.24
626 627 1.390123 CAACCACTTCACTGCGATACG 59.610 52.381 0.00 0.00 0.00 3.06
627 628 0.108804 ACCACTTCACTGCGATACGG 60.109 55.000 0.00 0.00 0.00 4.02
628 629 0.806102 CCACTTCACTGCGATACGGG 60.806 60.000 0.00 0.00 0.00 5.28
629 630 0.806102 CACTTCACTGCGATACGGGG 60.806 60.000 0.00 0.00 0.00 5.73
630 631 1.883084 CTTCACTGCGATACGGGGC 60.883 63.158 0.00 0.00 0.00 5.80
631 632 2.572095 CTTCACTGCGATACGGGGCA 62.572 60.000 0.00 0.00 37.63 5.36
632 633 2.845752 TTCACTGCGATACGGGGCAC 62.846 60.000 0.00 0.00 34.97 5.01
650 651 3.072468 CGTAGGGGCGAGGTGGAA 61.072 66.667 0.00 0.00 0.00 3.53
651 652 2.652095 CGTAGGGGCGAGGTGGAAA 61.652 63.158 0.00 0.00 0.00 3.13
652 653 1.078637 GTAGGGGCGAGGTGGAAAC 60.079 63.158 0.00 0.00 0.00 2.78
653 654 2.295602 TAGGGGCGAGGTGGAAACC 61.296 63.158 0.00 0.00 0.00 3.27
654 655 4.735358 GGGGCGAGGTGGAAACCC 62.735 72.222 0.00 0.00 40.05 4.11
658 659 4.675029 CGAGGTGGAAACCCGCGT 62.675 66.667 4.92 0.00 38.47 6.01
659 660 2.658422 GAGGTGGAAACCCGCGTA 59.342 61.111 4.92 0.00 35.08 4.42
660 661 1.219935 GAGGTGGAAACCCGCGTAT 59.780 57.895 4.92 0.00 35.08 3.06
661 662 0.392060 GAGGTGGAAACCCGCGTATT 60.392 55.000 4.92 0.00 35.08 1.89
662 663 0.392060 AGGTGGAAACCCGCGTATTC 60.392 55.000 4.92 6.29 35.08 1.75
663 664 1.698714 GGTGGAAACCCGCGTATTCG 61.699 60.000 4.92 0.00 40.37 3.34
673 674 2.893404 CGTATTCGCGGGTTGGGG 60.893 66.667 6.13 0.00 0.00 4.96
674 675 2.515290 GTATTCGCGGGTTGGGGG 60.515 66.667 6.13 0.00 0.00 5.40
675 676 4.493049 TATTCGCGGGTTGGGGGC 62.493 66.667 6.13 0.00 0.00 5.80
682 683 3.590574 GGGTTGGGGGCTGAGGTT 61.591 66.667 0.00 0.00 0.00 3.50
683 684 2.526110 GGTTGGGGGCTGAGGTTT 59.474 61.111 0.00 0.00 0.00 3.27
684 685 1.152333 GGTTGGGGGCTGAGGTTTT 60.152 57.895 0.00 0.00 0.00 2.43
685 686 1.471829 GGTTGGGGGCTGAGGTTTTG 61.472 60.000 0.00 0.00 0.00 2.44
686 687 1.836604 TTGGGGGCTGAGGTTTTGC 60.837 57.895 0.00 0.00 0.00 3.68
687 688 2.997315 GGGGGCTGAGGTTTTGCC 60.997 66.667 0.00 0.00 45.42 4.52
688 689 3.373565 GGGGCTGAGGTTTTGCCG 61.374 66.667 0.00 0.00 46.97 5.69
689 690 4.056125 GGGCTGAGGTTTTGCCGC 62.056 66.667 0.00 0.00 46.97 6.53
690 691 4.404654 GGCTGAGGTTTTGCCGCG 62.405 66.667 0.00 0.00 43.70 6.46
692 693 4.404654 CTGAGGTTTTGCCGCGCC 62.405 66.667 0.00 0.00 43.70 6.53
702 703 3.758931 GCCGCGCCCCTCAAAATT 61.759 61.111 0.00 0.00 0.00 1.82
703 704 2.181525 CCGCGCCCCTCAAAATTG 59.818 61.111 0.00 0.00 0.00 2.32
704 705 2.635443 CCGCGCCCCTCAAAATTGT 61.635 57.895 0.00 0.00 0.00 2.71
705 706 1.288752 CGCGCCCCTCAAAATTGTT 59.711 52.632 0.00 0.00 0.00 2.83
706 707 0.319469 CGCGCCCCTCAAAATTGTTT 60.319 50.000 0.00 0.00 0.00 2.83
707 708 1.147473 GCGCCCCTCAAAATTGTTTG 58.853 50.000 0.00 0.00 44.71 2.93
708 709 1.540146 GCGCCCCTCAAAATTGTTTGT 60.540 47.619 0.00 0.00 43.90 2.83
709 710 2.134346 CGCCCCTCAAAATTGTTTGTG 58.866 47.619 0.00 0.00 43.90 3.33
710 711 2.482839 CGCCCCTCAAAATTGTTTGTGT 60.483 45.455 0.00 0.00 43.90 3.72
711 712 2.871633 GCCCCTCAAAATTGTTTGTGTG 59.128 45.455 0.00 0.00 43.90 3.82
712 713 3.681313 GCCCCTCAAAATTGTTTGTGTGT 60.681 43.478 0.00 0.00 43.90 3.72
713 714 4.119136 CCCCTCAAAATTGTTTGTGTGTC 58.881 43.478 0.00 0.00 43.90 3.67
714 715 3.796178 CCCTCAAAATTGTTTGTGTGTCG 59.204 43.478 0.00 0.00 43.90 4.35
715 716 3.796178 CCTCAAAATTGTTTGTGTGTCGG 59.204 43.478 0.00 0.00 43.90 4.79
716 717 3.182967 TCAAAATTGTTTGTGTGTCGGC 58.817 40.909 0.00 0.00 43.90 5.54
717 718 2.217429 AAATTGTTTGTGTGTCGGCC 57.783 45.000 0.00 0.00 0.00 6.13
718 719 1.107114 AATTGTTTGTGTGTCGGCCA 58.893 45.000 2.24 0.00 0.00 5.36
719 720 0.383949 ATTGTTTGTGTGTCGGCCAC 59.616 50.000 2.24 0.25 44.78 5.01
726 727 4.659874 GTGTCGGCCACGTTTGCG 62.660 66.667 2.24 0.00 44.93 4.85
729 730 4.912485 TCGGCCACGTTTGCGGAA 62.912 61.111 12.81 0.00 43.45 4.30
730 731 3.732892 CGGCCACGTTTGCGGAAT 61.733 61.111 2.24 0.00 43.45 3.01
731 732 2.178273 GGCCACGTTTGCGGAATC 59.822 61.111 0.00 0.00 43.45 2.52
732 733 2.332654 GGCCACGTTTGCGGAATCT 61.333 57.895 0.00 0.00 43.45 2.40
733 734 1.154225 GCCACGTTTGCGGAATCTG 60.154 57.895 0.00 0.00 43.45 2.90
734 735 1.852067 GCCACGTTTGCGGAATCTGT 61.852 55.000 0.00 0.00 43.45 3.41
735 736 0.591170 CCACGTTTGCGGAATCTGTT 59.409 50.000 0.00 0.00 43.45 3.16
736 737 1.001815 CCACGTTTGCGGAATCTGTTT 60.002 47.619 0.00 0.00 43.45 2.83
737 738 2.043411 CACGTTTGCGGAATCTGTTTG 58.957 47.619 0.00 0.00 43.45 2.93
738 739 1.001815 ACGTTTGCGGAATCTGTTTGG 60.002 47.619 0.00 0.00 43.45 3.28
739 740 1.665735 CGTTTGCGGAATCTGTTTGGG 60.666 52.381 0.00 0.00 0.00 4.12
740 741 0.316841 TTTGCGGAATCTGTTTGGGC 59.683 50.000 0.00 0.00 0.00 5.36
741 742 0.825425 TTGCGGAATCTGTTTGGGCA 60.825 50.000 0.00 0.00 0.00 5.36
742 743 1.243342 TGCGGAATCTGTTTGGGCAG 61.243 55.000 0.00 0.00 37.81 4.85
743 744 1.937546 GCGGAATCTGTTTGGGCAGG 61.938 60.000 0.00 0.00 37.12 4.85
744 745 0.322456 CGGAATCTGTTTGGGCAGGA 60.322 55.000 0.00 0.00 37.12 3.86
745 746 1.683011 CGGAATCTGTTTGGGCAGGAT 60.683 52.381 0.00 0.00 37.12 3.24
746 747 2.460669 GGAATCTGTTTGGGCAGGATT 58.539 47.619 0.00 0.00 37.12 3.01
747 748 2.833943 GGAATCTGTTTGGGCAGGATTT 59.166 45.455 0.00 0.00 37.12 2.17
748 749 3.261643 GGAATCTGTTTGGGCAGGATTTT 59.738 43.478 0.00 0.00 37.12 1.82
749 750 4.263025 GGAATCTGTTTGGGCAGGATTTTT 60.263 41.667 0.00 0.00 37.12 1.94
750 751 4.541973 ATCTGTTTGGGCAGGATTTTTC 57.458 40.909 0.00 0.00 37.12 2.29
751 752 3.303938 TCTGTTTGGGCAGGATTTTTCA 58.696 40.909 0.00 0.00 37.12 2.69
752 753 3.069443 TCTGTTTGGGCAGGATTTTTCAC 59.931 43.478 0.00 0.00 37.12 3.18
753 754 2.103941 TGTTTGGGCAGGATTTTTCACC 59.896 45.455 0.00 0.00 0.00 4.02
754 755 2.094100 TTGGGCAGGATTTTTCACCA 57.906 45.000 0.00 0.00 0.00 4.17
755 756 2.323999 TGGGCAGGATTTTTCACCAT 57.676 45.000 0.00 0.00 0.00 3.55
756 757 2.618794 TGGGCAGGATTTTTCACCATT 58.381 42.857 0.00 0.00 0.00 3.16
757 758 2.978278 TGGGCAGGATTTTTCACCATTT 59.022 40.909 0.00 0.00 0.00 2.32
758 759 3.393941 TGGGCAGGATTTTTCACCATTTT 59.606 39.130 0.00 0.00 0.00 1.82
759 760 3.752747 GGGCAGGATTTTTCACCATTTTG 59.247 43.478 0.00 0.00 0.00 2.44
760 761 4.504689 GGGCAGGATTTTTCACCATTTTGA 60.505 41.667 0.00 0.00 0.00 2.69
761 762 4.452114 GGCAGGATTTTTCACCATTTTGAC 59.548 41.667 0.00 0.00 0.00 3.18
762 763 4.150451 GCAGGATTTTTCACCATTTTGACG 59.850 41.667 0.00 0.00 0.00 4.35
763 764 5.288804 CAGGATTTTTCACCATTTTGACGT 58.711 37.500 0.00 0.00 0.00 4.34
764 765 5.752955 CAGGATTTTTCACCATTTTGACGTT 59.247 36.000 0.00 0.00 0.00 3.99
765 766 6.920758 CAGGATTTTTCACCATTTTGACGTTA 59.079 34.615 0.00 0.00 0.00 3.18
766 767 7.598493 CAGGATTTTTCACCATTTTGACGTTAT 59.402 33.333 0.00 0.00 0.00 1.89
767 768 8.147704 AGGATTTTTCACCATTTTGACGTTATT 58.852 29.630 0.00 0.00 0.00 1.40
768 769 8.769891 GGATTTTTCACCATTTTGACGTTATTT 58.230 29.630 0.00 0.00 0.00 1.40
772 773 7.839438 TTCACCATTTTGACGTTATTTTACG 57.161 32.000 0.00 0.00 46.52 3.18
773 774 5.852229 TCACCATTTTGACGTTATTTTACGC 59.148 36.000 0.00 0.00 45.06 4.42
774 775 4.847217 ACCATTTTGACGTTATTTTACGCG 59.153 37.500 3.53 3.53 45.06 6.01
775 776 4.847217 CCATTTTGACGTTATTTTACGCGT 59.153 37.500 19.17 19.17 45.06 6.01
778 779 2.320863 GACGTTATTTTACGCGTCGG 57.679 50.000 18.63 0.00 45.06 4.79
779 780 0.991344 ACGTTATTTTACGCGTCGGG 59.009 50.000 18.63 7.88 45.06 5.14
780 781 0.298411 CGTTATTTTACGCGTCGGGG 59.702 55.000 18.63 0.00 34.45 5.73
781 782 0.026674 GTTATTTTACGCGTCGGGGC 59.973 55.000 18.63 0.00 0.00 5.80
782 783 0.108233 TTATTTTACGCGTCGGGGCT 60.108 50.000 18.63 0.00 0.00 5.19
783 784 0.108233 TATTTTACGCGTCGGGGCTT 60.108 50.000 18.63 0.00 0.00 4.35
784 785 0.956902 ATTTTACGCGTCGGGGCTTT 60.957 50.000 18.63 0.00 0.00 3.51
785 786 1.165284 TTTTACGCGTCGGGGCTTTT 61.165 50.000 18.63 0.00 0.00 2.27
786 787 1.165284 TTTACGCGTCGGGGCTTTTT 61.165 50.000 18.63 0.00 0.00 1.94
787 788 1.843734 TTACGCGTCGGGGCTTTTTG 61.844 55.000 18.63 0.00 0.00 2.44
789 790 3.972276 GCGTCGGGGCTTTTTGCA 61.972 61.111 0.00 0.00 45.15 4.08
790 791 2.255252 CGTCGGGGCTTTTTGCAG 59.745 61.111 0.00 0.00 45.15 4.41
791 792 2.650778 GTCGGGGCTTTTTGCAGG 59.349 61.111 0.00 0.00 45.15 4.85
792 793 2.600173 TCGGGGCTTTTTGCAGGG 60.600 61.111 0.00 0.00 45.15 4.45
793 794 2.917227 CGGGGCTTTTTGCAGGGT 60.917 61.111 0.00 0.00 45.15 4.34
794 795 2.743060 GGGGCTTTTTGCAGGGTG 59.257 61.111 0.00 0.00 45.15 4.61
795 796 2.140138 GGGGCTTTTTGCAGGGTGT 61.140 57.895 0.00 0.00 45.15 4.16
796 797 1.367471 GGGCTTTTTGCAGGGTGTC 59.633 57.895 0.00 0.00 45.15 3.67
797 798 1.367471 GGCTTTTTGCAGGGTGTCC 59.633 57.895 0.00 0.00 45.15 4.02
798 799 1.115326 GGCTTTTTGCAGGGTGTCCT 61.115 55.000 0.00 0.00 46.26 3.85
799 800 1.616159 GCTTTTTGCAGGGTGTCCTA 58.384 50.000 0.00 0.00 42.67 2.94
800 801 1.541588 GCTTTTTGCAGGGTGTCCTAG 59.458 52.381 0.00 0.00 42.67 3.02
801 802 2.814097 GCTTTTTGCAGGGTGTCCTAGA 60.814 50.000 0.00 0.00 42.67 2.43
802 803 2.859165 TTTTGCAGGGTGTCCTAGAG 57.141 50.000 0.00 0.00 42.67 2.43
803 804 1.729586 TTTGCAGGGTGTCCTAGAGT 58.270 50.000 0.00 0.00 42.67 3.24
804 805 1.729586 TTGCAGGGTGTCCTAGAGTT 58.270 50.000 0.00 0.00 42.67 3.01
805 806 2.615986 TGCAGGGTGTCCTAGAGTTA 57.384 50.000 0.00 0.00 42.67 2.24
806 807 2.176889 TGCAGGGTGTCCTAGAGTTAC 58.823 52.381 0.00 0.00 42.67 2.50
807 808 2.225293 TGCAGGGTGTCCTAGAGTTACT 60.225 50.000 0.00 0.00 42.67 2.24
808 809 2.427812 GCAGGGTGTCCTAGAGTTACTC 59.572 54.545 3.85 3.85 42.67 2.59
818 819 9.187996 GTGTCCTAGAGTTACTCTAATAAGGTT 57.812 37.037 20.78 0.00 41.74 3.50
842 843 2.911143 CTTGGTAGGCTCGCCCAT 59.089 61.111 3.92 0.00 36.58 4.00
851 852 3.461773 CTCGCCCATCCCACTCGT 61.462 66.667 0.00 0.00 0.00 4.18
1482 1494 2.342648 GTCCGTGAAGCCCTCGTT 59.657 61.111 0.00 0.00 0.00 3.85
1942 1966 5.352569 ACTTGAATAACTTCAGATGCTTCGG 59.647 40.000 0.00 0.00 42.19 4.30
2071 2326 7.134815 GTGCTTATGATGCGTTCTTGAATTAT 58.865 34.615 0.00 0.00 0.00 1.28
2072 2327 7.112565 GTGCTTATGATGCGTTCTTGAATTATG 59.887 37.037 0.00 0.00 0.00 1.90
2120 2375 5.653255 ATGGTCCTCTATGGTTATTGCTT 57.347 39.130 0.00 0.00 37.07 3.91
2239 2495 1.078426 GTCTGGGTAGCCGTGCAAT 60.078 57.895 6.45 0.00 0.00 3.56
2442 2700 3.378112 CGACGTATACTTTACCCTCACCA 59.622 47.826 0.56 0.00 0.00 4.17
2443 2701 4.037208 CGACGTATACTTTACCCTCACCAT 59.963 45.833 0.56 0.00 0.00 3.55
2444 2702 5.239306 CGACGTATACTTTACCCTCACCATA 59.761 44.000 0.56 0.00 0.00 2.74
2445 2703 6.238731 CGACGTATACTTTACCCTCACCATAA 60.239 42.308 0.56 0.00 0.00 1.90
2446 2704 7.422465 ACGTATACTTTACCCTCACCATAAA 57.578 36.000 0.56 0.00 0.00 1.40
2447 2705 8.026396 ACGTATACTTTACCCTCACCATAAAT 57.974 34.615 0.56 0.00 0.00 1.40
2448 2706 9.146586 ACGTATACTTTACCCTCACCATAAATA 57.853 33.333 0.56 0.00 0.00 1.40
2459 2717 8.319146 ACCCTCACCATAAATATTAGTTATCCG 58.681 37.037 0.00 0.00 0.00 4.18
2460 2718 8.537016 CCCTCACCATAAATATTAGTTATCCGA 58.463 37.037 0.00 0.00 0.00 4.55
2475 2733 9.592196 TTAGTTATCCGATGTATACTTTACCCT 57.408 33.333 4.17 0.00 0.00 4.34
2476 2734 8.120140 AGTTATCCGATGTATACTTTACCCTC 57.880 38.462 4.17 0.00 0.00 4.30
2477 2735 7.727186 AGTTATCCGATGTATACTTTACCCTCA 59.273 37.037 4.17 0.00 0.00 3.86
2478 2736 5.779529 TCCGATGTATACTTTACCCTCAC 57.220 43.478 4.17 0.00 0.00 3.51
2479 2737 4.586001 TCCGATGTATACTTTACCCTCACC 59.414 45.833 4.17 0.00 0.00 4.02
2480 2738 4.342951 CCGATGTATACTTTACCCTCACCA 59.657 45.833 4.17 0.00 0.00 4.17
2536 2794 8.360390 GTTCAGGTTTTGGTAAGATTTTGATCT 58.640 33.333 0.00 0.00 0.00 2.75
2554 2812 3.281727 TCTGATTTGGGTATGGACAGC 57.718 47.619 0.00 0.00 0.00 4.40
2555 2813 2.575735 TCTGATTTGGGTATGGACAGCA 59.424 45.455 0.00 0.00 0.00 4.41
2556 2814 2.947652 CTGATTTGGGTATGGACAGCAG 59.052 50.000 0.00 0.00 0.00 4.24
2557 2815 2.301346 GATTTGGGTATGGACAGCAGG 58.699 52.381 0.00 0.00 0.00 4.85
2558 2816 1.367346 TTTGGGTATGGACAGCAGGA 58.633 50.000 0.00 0.00 0.00 3.86
2559 2817 0.911769 TTGGGTATGGACAGCAGGAG 59.088 55.000 0.00 0.00 0.00 3.69
2560 2818 0.042581 TGGGTATGGACAGCAGGAGA 59.957 55.000 0.00 0.00 0.00 3.71
2561 2819 0.755686 GGGTATGGACAGCAGGAGAG 59.244 60.000 0.00 0.00 0.00 3.20
2567 2825 1.621672 GGACAGCAGGAGAGGGGAAG 61.622 65.000 0.00 0.00 0.00 3.46
2605 2863 7.502226 TGATTGAGTCAAGATTTTGGTAACAGT 59.498 33.333 11.91 0.00 40.66 3.55
2658 2916 5.858581 GCATGACATGGTTTTTGAGAAGTAC 59.141 40.000 17.03 0.00 0.00 2.73
2714 2973 9.994432 CTTTTATGTTGGTTTTTATTTTGTGCA 57.006 25.926 0.00 0.00 0.00 4.57
2753 3012 8.038492 TCATCAAAACAAACCCAAAAGAAAAG 57.962 30.769 0.00 0.00 0.00 2.27
2754 3013 6.809630 TCAAAACAAACCCAAAAGAAAAGG 57.190 33.333 0.00 0.00 0.00 3.11
2755 3014 6.534634 TCAAAACAAACCCAAAAGAAAAGGA 58.465 32.000 0.00 0.00 0.00 3.36
2756 3015 6.998673 TCAAAACAAACCCAAAAGAAAAGGAA 59.001 30.769 0.00 0.00 0.00 3.36
2757 3016 7.502561 TCAAAACAAACCCAAAAGAAAAGGAAA 59.497 29.630 0.00 0.00 0.00 3.13
2790 3049 1.677552 GAGGCGTGAGGGAGGAAAA 59.322 57.895 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.629058 CACGAAGACGAGAACTGAAAGA 58.371 45.455 0.00 0.00 42.66 2.52
1 2 2.154007 GCACGAAGACGAGAACTGAAAG 59.846 50.000 0.00 0.00 42.66 2.62
2 3 2.124903 GCACGAAGACGAGAACTGAAA 58.875 47.619 0.00 0.00 42.66 2.69
3 4 1.337071 AGCACGAAGACGAGAACTGAA 59.663 47.619 0.00 0.00 42.66 3.02
4 5 0.952280 AGCACGAAGACGAGAACTGA 59.048 50.000 0.00 0.00 42.66 3.41
5 6 1.332178 GAGCACGAAGACGAGAACTG 58.668 55.000 0.00 0.00 42.66 3.16
6 7 0.241481 GGAGCACGAAGACGAGAACT 59.759 55.000 0.00 0.00 42.66 3.01
7 8 0.241481 AGGAGCACGAAGACGAGAAC 59.759 55.000 0.00 0.00 42.66 3.01
8 9 0.959553 AAGGAGCACGAAGACGAGAA 59.040 50.000 0.00 0.00 42.66 2.87
9 10 0.522180 GAAGGAGCACGAAGACGAGA 59.478 55.000 0.00 0.00 42.66 4.04
10 11 0.241213 TGAAGGAGCACGAAGACGAG 59.759 55.000 0.00 0.00 42.66 4.18
11 12 0.888619 ATGAAGGAGCACGAAGACGA 59.111 50.000 0.00 0.00 42.66 4.20
12 13 0.994995 CATGAAGGAGCACGAAGACG 59.005 55.000 0.00 0.00 45.75 4.18
13 14 1.996191 GTCATGAAGGAGCACGAAGAC 59.004 52.381 0.00 0.00 0.00 3.01
14 15 1.618343 TGTCATGAAGGAGCACGAAGA 59.382 47.619 0.00 0.00 0.00 2.87
15 16 1.728971 GTGTCATGAAGGAGCACGAAG 59.271 52.381 0.00 0.00 0.00 3.79
16 17 1.795768 GTGTCATGAAGGAGCACGAA 58.204 50.000 0.00 0.00 0.00 3.85
17 18 3.514777 GTGTCATGAAGGAGCACGA 57.485 52.632 0.00 0.00 0.00 4.35
18 19 2.073307 CGTGTCATGAAGGAGCACG 58.927 57.895 17.77 17.77 44.88 5.34
19 20 0.792640 CACGTGTCATGAAGGAGCAC 59.207 55.000 7.58 0.00 0.00 4.40
20 21 0.950555 GCACGTGTCATGAAGGAGCA 60.951 55.000 18.38 0.00 0.00 4.26
21 22 0.950555 TGCACGTGTCATGAAGGAGC 60.951 55.000 18.38 5.21 0.00 4.70
22 23 0.792640 GTGCACGTGTCATGAAGGAG 59.207 55.000 18.38 0.00 0.00 3.69
23 24 0.943835 CGTGCACGTGTCATGAAGGA 60.944 55.000 30.50 0.00 34.11 3.36
24 25 1.492873 CGTGCACGTGTCATGAAGG 59.507 57.895 30.50 0.00 34.11 3.46
35 36 1.136363 CATAGTTGGTTGACGTGCACG 60.136 52.381 35.99 35.99 46.33 5.34
36 37 1.399727 GCATAGTTGGTTGACGTGCAC 60.400 52.381 6.82 6.82 36.62 4.57
37 38 0.871722 GCATAGTTGGTTGACGTGCA 59.128 50.000 0.00 0.00 36.62 4.57
38 39 0.179225 CGCATAGTTGGTTGACGTGC 60.179 55.000 0.00 0.00 34.73 5.34
39 40 1.144969 ACGCATAGTTGGTTGACGTG 58.855 50.000 0.00 0.00 0.00 4.49
40 41 2.602878 CTACGCATAGTTGGTTGACGT 58.397 47.619 0.00 0.00 36.17 4.34
41 42 1.323534 GCTACGCATAGTTGGTTGACG 59.676 52.381 0.00 0.00 0.00 4.35
42 43 1.323534 CGCTACGCATAGTTGGTTGAC 59.676 52.381 0.00 0.00 0.00 3.18
43 44 1.635844 CGCTACGCATAGTTGGTTGA 58.364 50.000 0.00 0.00 0.00 3.18
56 57 0.297820 GATTTGTTCCGAGCGCTACG 59.702 55.000 11.50 16.04 0.00 3.51
57 58 1.060698 GTGATTTGTTCCGAGCGCTAC 59.939 52.381 11.50 5.27 0.00 3.58
58 59 1.337354 TGTGATTTGTTCCGAGCGCTA 60.337 47.619 11.50 0.00 0.00 4.26
59 60 0.602638 TGTGATTTGTTCCGAGCGCT 60.603 50.000 11.27 11.27 0.00 5.92
60 61 0.237235 TTGTGATTTGTTCCGAGCGC 59.763 50.000 0.00 0.00 0.00 5.92
61 62 1.725931 GCTTGTGATTTGTTCCGAGCG 60.726 52.381 0.00 0.00 0.00 5.03
62 63 1.266718 TGCTTGTGATTTGTTCCGAGC 59.733 47.619 0.00 0.00 34.81 5.03
63 64 3.624326 TTGCTTGTGATTTGTTCCGAG 57.376 42.857 0.00 0.00 0.00 4.63
64 65 3.129462 TGTTTGCTTGTGATTTGTTCCGA 59.871 39.130 0.00 0.00 0.00 4.55
65 66 3.242712 GTGTTTGCTTGTGATTTGTTCCG 59.757 43.478 0.00 0.00 0.00 4.30
66 67 4.432712 AGTGTTTGCTTGTGATTTGTTCC 58.567 39.130 0.00 0.00 0.00 3.62
67 68 7.357532 CGATAAGTGTTTGCTTGTGATTTGTTC 60.358 37.037 0.00 0.00 0.00 3.18
68 69 6.417635 CGATAAGTGTTTGCTTGTGATTTGTT 59.582 34.615 0.00 0.00 0.00 2.83
69 70 5.914635 CGATAAGTGTTTGCTTGTGATTTGT 59.085 36.000 0.00 0.00 0.00 2.83
70 71 5.343058 CCGATAAGTGTTTGCTTGTGATTTG 59.657 40.000 0.00 0.00 0.00 2.32
71 72 5.460646 CCGATAAGTGTTTGCTTGTGATTT 58.539 37.500 0.00 0.00 0.00 2.17
72 73 4.615912 GCCGATAAGTGTTTGCTTGTGATT 60.616 41.667 0.00 0.00 0.00 2.57
73 74 3.119849 GCCGATAAGTGTTTGCTTGTGAT 60.120 43.478 0.00 0.00 0.00 3.06
74 75 2.225491 GCCGATAAGTGTTTGCTTGTGA 59.775 45.455 0.00 0.00 0.00 3.58
75 76 2.031245 TGCCGATAAGTGTTTGCTTGTG 60.031 45.455 0.00 0.00 0.00 3.33
76 77 2.226330 TGCCGATAAGTGTTTGCTTGT 58.774 42.857 0.00 0.00 0.00 3.16
77 78 2.855180 CTGCCGATAAGTGTTTGCTTG 58.145 47.619 0.00 0.00 0.00 4.01
78 79 1.200020 GCTGCCGATAAGTGTTTGCTT 59.800 47.619 0.00 0.00 0.00 3.91
79 80 0.804989 GCTGCCGATAAGTGTTTGCT 59.195 50.000 0.00 0.00 0.00 3.91
80 81 0.804989 AGCTGCCGATAAGTGTTTGC 59.195 50.000 0.00 0.00 0.00 3.68
81 82 1.061131 CGAGCTGCCGATAAGTGTTTG 59.939 52.381 0.00 0.00 0.00 2.93
82 83 1.337823 ACGAGCTGCCGATAAGTGTTT 60.338 47.619 15.53 0.00 0.00 2.83
83 84 0.246635 ACGAGCTGCCGATAAGTGTT 59.753 50.000 15.53 0.00 0.00 3.32
84 85 0.458543 CACGAGCTGCCGATAAGTGT 60.459 55.000 15.53 0.00 0.00 3.55
85 86 1.148157 CCACGAGCTGCCGATAAGTG 61.148 60.000 15.53 8.18 0.00 3.16
86 87 1.141881 CCACGAGCTGCCGATAAGT 59.858 57.895 15.53 0.00 0.00 2.24
87 88 1.592669 CCCACGAGCTGCCGATAAG 60.593 63.158 15.53 4.59 0.00 1.73
88 89 2.499205 CCCACGAGCTGCCGATAA 59.501 61.111 15.53 0.00 0.00 1.75
89 90 4.221422 GCCCACGAGCTGCCGATA 62.221 66.667 15.53 0.00 0.00 2.92
450 451 1.335810 TCCACCATCGATACGCTACAC 59.664 52.381 0.00 0.00 0.00 2.90
451 452 1.607148 CTCCACCATCGATACGCTACA 59.393 52.381 0.00 0.00 0.00 2.74
452 453 1.068472 CCTCCACCATCGATACGCTAC 60.068 57.143 0.00 0.00 0.00 3.58
453 454 1.244816 CCTCCACCATCGATACGCTA 58.755 55.000 0.00 0.00 0.00 4.26
454 455 1.464376 CCCTCCACCATCGATACGCT 61.464 60.000 0.00 0.00 0.00 5.07
455 456 1.006102 CCCTCCACCATCGATACGC 60.006 63.158 0.00 0.00 0.00 4.42
456 457 0.032130 CACCCTCCACCATCGATACG 59.968 60.000 0.00 0.00 0.00 3.06
457 458 0.393077 CCACCCTCCACCATCGATAC 59.607 60.000 0.00 0.00 0.00 2.24
458 459 0.762842 CCCACCCTCCACCATCGATA 60.763 60.000 0.00 0.00 0.00 2.92
459 460 2.072487 CCCACCCTCCACCATCGAT 61.072 63.158 0.00 0.00 0.00 3.59
460 461 2.687200 CCCACCCTCCACCATCGA 60.687 66.667 0.00 0.00 0.00 3.59
461 462 3.797353 CCCCACCCTCCACCATCG 61.797 72.222 0.00 0.00 0.00 3.84
462 463 3.420482 CCCCCACCCTCCACCATC 61.420 72.222 0.00 0.00 0.00 3.51
463 464 3.967024 TCCCCCACCCTCCACCAT 61.967 66.667 0.00 0.00 0.00 3.55
464 465 4.995058 GTCCCCCACCCTCCACCA 62.995 72.222 0.00 0.00 0.00 4.17
494 495 2.180204 AAATCTGCGGGCGGAATCG 61.180 57.895 6.24 0.00 34.70 3.34
495 496 1.356624 CAAATCTGCGGGCGGAATC 59.643 57.895 6.24 0.00 34.70 2.52
496 497 2.120909 CCAAATCTGCGGGCGGAAT 61.121 57.895 6.24 0.00 34.70 3.01
497 498 2.749839 CCAAATCTGCGGGCGGAA 60.750 61.111 6.24 0.00 34.70 4.30
502 503 1.666209 ATTTCGGCCAAATCTGCGGG 61.666 55.000 2.24 0.00 27.18 6.13
503 504 0.248621 GATTTCGGCCAAATCTGCGG 60.249 55.000 22.83 0.00 45.02 5.69
504 505 3.240684 GATTTCGGCCAAATCTGCG 57.759 52.632 22.83 1.80 45.02 5.18
509 510 2.188912 CCGGTGATTTCGGCCAAAT 58.811 52.632 2.24 8.22 41.07 2.32
510 511 3.674906 CCGGTGATTTCGGCCAAA 58.325 55.556 2.24 2.92 41.07 3.28
530 531 3.178540 ATAGGTTCCGCCCATCCGC 62.179 63.158 0.00 0.00 38.26 5.54
531 532 1.301716 CATAGGTTCCGCCCATCCG 60.302 63.158 0.00 0.00 38.26 4.18
532 533 1.073199 CCATAGGTTCCGCCCATCC 59.927 63.158 0.00 0.00 38.26 3.51
533 534 1.600916 GCCATAGGTTCCGCCCATC 60.601 63.158 0.00 0.00 38.26 3.51
534 535 2.515901 GCCATAGGTTCCGCCCAT 59.484 61.111 0.00 0.00 38.26 4.00
535 536 4.169696 CGCCATAGGTTCCGCCCA 62.170 66.667 0.00 0.00 38.26 5.36
536 537 4.929707 CCGCCATAGGTTCCGCCC 62.930 72.222 0.00 0.00 38.26 6.13
537 538 4.929707 CCCGCCATAGGTTCCGCC 62.930 72.222 0.00 0.00 37.58 6.13
539 540 4.169696 TGCCCGCCATAGGTTCCG 62.170 66.667 0.00 0.00 0.00 4.30
540 541 2.203209 CTGCCCGCCATAGGTTCC 60.203 66.667 0.00 0.00 0.00 3.62
541 542 1.819632 CACTGCCCGCCATAGGTTC 60.820 63.158 0.00 0.00 0.00 3.62
542 543 2.272146 CACTGCCCGCCATAGGTT 59.728 61.111 0.00 0.00 0.00 3.50
543 544 3.797353 CCACTGCCCGCCATAGGT 61.797 66.667 0.00 0.00 0.00 3.08
545 546 4.488136 TGCCACTGCCCGCCATAG 62.488 66.667 0.00 0.00 36.33 2.23
546 547 4.488136 CTGCCACTGCCCGCCATA 62.488 66.667 0.00 0.00 36.33 2.74
552 553 4.748144 CCCCTTCTGCCACTGCCC 62.748 72.222 0.00 0.00 36.33 5.36
553 554 4.748144 CCCCCTTCTGCCACTGCC 62.748 72.222 0.00 0.00 36.33 4.85
554 555 3.971702 ACCCCCTTCTGCCACTGC 61.972 66.667 0.00 0.00 38.26 4.40
555 556 2.034687 CACCCCCTTCTGCCACTG 59.965 66.667 0.00 0.00 0.00 3.66
556 557 3.260100 CCACCCCCTTCTGCCACT 61.260 66.667 0.00 0.00 0.00 4.00
557 558 4.366684 CCCACCCCCTTCTGCCAC 62.367 72.222 0.00 0.00 0.00 5.01
558 559 4.608514 TCCCACCCCCTTCTGCCA 62.609 66.667 0.00 0.00 0.00 4.92
559 560 2.380571 TTTTCCCACCCCCTTCTGCC 62.381 60.000 0.00 0.00 0.00 4.85
560 561 0.900182 CTTTTCCCACCCCCTTCTGC 60.900 60.000 0.00 0.00 0.00 4.26
561 562 0.251787 CCTTTTCCCACCCCCTTCTG 60.252 60.000 0.00 0.00 0.00 3.02
562 563 1.443729 CCCTTTTCCCACCCCCTTCT 61.444 60.000 0.00 0.00 0.00 2.85
563 564 1.078528 CCCTTTTCCCACCCCCTTC 59.921 63.158 0.00 0.00 0.00 3.46
564 565 3.174319 GCCCTTTTCCCACCCCCTT 62.174 63.158 0.00 0.00 0.00 3.95
565 566 3.600981 GCCCTTTTCCCACCCCCT 61.601 66.667 0.00 0.00 0.00 4.79
575 576 4.966787 TTCAGCCCGCGCCCTTTT 62.967 61.111 0.00 0.00 34.57 2.27
576 577 4.966787 TTTCAGCCCGCGCCCTTT 62.967 61.111 0.00 0.00 34.57 3.11
577 578 4.740822 ATTTCAGCCCGCGCCCTT 62.741 61.111 0.00 0.00 34.57 3.95
580 581 4.179579 GACATTTCAGCCCGCGCC 62.180 66.667 0.00 0.00 34.57 6.53
581 582 4.179579 GGACATTTCAGCCCGCGC 62.180 66.667 0.00 0.00 0.00 6.86
582 583 3.508840 GGGACATTTCAGCCCGCG 61.509 66.667 0.00 0.00 31.06 6.46
583 584 2.044946 AGGGACATTTCAGCCCGC 60.045 61.111 0.00 0.00 46.68 6.13
584 585 1.452108 GGAGGGACATTTCAGCCCG 60.452 63.158 0.00 0.00 46.68 6.13
585 586 1.076705 GGGAGGGACATTTCAGCCC 60.077 63.158 0.00 0.00 42.37 5.19
586 587 1.452108 CGGGAGGGACATTTCAGCC 60.452 63.158 0.00 0.00 0.00 4.85
587 588 2.115291 GCGGGAGGGACATTTCAGC 61.115 63.158 0.00 0.00 0.00 4.26
588 589 1.452108 GGCGGGAGGGACATTTCAG 60.452 63.158 0.00 0.00 0.00 3.02
589 590 1.784301 TTGGCGGGAGGGACATTTCA 61.784 55.000 0.00 0.00 0.00 2.69
590 591 1.001393 TTGGCGGGAGGGACATTTC 60.001 57.895 0.00 0.00 0.00 2.17
591 592 1.304134 GTTGGCGGGAGGGACATTT 60.304 57.895 0.00 0.00 0.00 2.32
592 593 2.355115 GTTGGCGGGAGGGACATT 59.645 61.111 0.00 0.00 0.00 2.71
593 594 3.728373 GGTTGGCGGGAGGGACAT 61.728 66.667 0.00 0.00 0.00 3.06
595 596 4.717313 GTGGTTGGCGGGAGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
596 597 4.974438 AGTGGTTGGCGGGAGGGA 62.974 66.667 0.00 0.00 0.00 4.20
597 598 3.920093 GAAGTGGTTGGCGGGAGGG 62.920 68.421 0.00 0.00 0.00 4.30
598 599 2.359975 GAAGTGGTTGGCGGGAGG 60.360 66.667 0.00 0.00 0.00 4.30
599 600 1.966451 GTGAAGTGGTTGGCGGGAG 60.966 63.158 0.00 0.00 0.00 4.30
600 601 2.112297 GTGAAGTGGTTGGCGGGA 59.888 61.111 0.00 0.00 0.00 5.14
601 602 2.113139 AGTGAAGTGGTTGGCGGG 59.887 61.111 0.00 0.00 0.00 6.13
602 603 2.908073 GCAGTGAAGTGGTTGGCGG 61.908 63.158 0.00 0.00 0.00 6.13
603 604 2.639286 GCAGTGAAGTGGTTGGCG 59.361 61.111 0.00 0.00 0.00 5.69
604 605 1.237285 ATCGCAGTGAAGTGGTTGGC 61.237 55.000 0.00 0.00 0.00 4.52
605 606 1.732259 GTATCGCAGTGAAGTGGTTGG 59.268 52.381 0.00 0.00 0.00 3.77
606 607 1.390123 CGTATCGCAGTGAAGTGGTTG 59.610 52.381 0.00 0.00 0.00 3.77
607 608 1.671850 CCGTATCGCAGTGAAGTGGTT 60.672 52.381 0.00 0.00 0.00 3.67
608 609 0.108804 CCGTATCGCAGTGAAGTGGT 60.109 55.000 0.00 0.00 0.00 4.16
609 610 0.806102 CCCGTATCGCAGTGAAGTGG 60.806 60.000 0.00 0.00 0.00 4.00
610 611 0.806102 CCCCGTATCGCAGTGAAGTG 60.806 60.000 0.00 0.00 0.00 3.16
611 612 1.515954 CCCCGTATCGCAGTGAAGT 59.484 57.895 0.00 0.00 0.00 3.01
612 613 1.883084 GCCCCGTATCGCAGTGAAG 60.883 63.158 0.00 0.00 0.00 3.02
613 614 2.185867 GCCCCGTATCGCAGTGAA 59.814 61.111 0.00 0.00 0.00 3.18
614 615 3.071837 TGCCCCGTATCGCAGTGA 61.072 61.111 0.00 0.00 0.00 3.41
615 616 2.890474 GTGCCCCGTATCGCAGTG 60.890 66.667 0.00 0.00 35.20 3.66
616 617 4.157120 GGTGCCCCGTATCGCAGT 62.157 66.667 0.00 0.00 35.20 4.40
630 631 4.143333 CACCTCGCCCCTACGGTG 62.143 72.222 0.00 0.00 44.24 4.94
633 634 2.652095 TTTCCACCTCGCCCCTACG 61.652 63.158 0.00 0.00 0.00 3.51
634 635 1.078637 GTTTCCACCTCGCCCCTAC 60.079 63.158 0.00 0.00 0.00 3.18
635 636 2.295602 GGTTTCCACCTCGCCCCTA 61.296 63.158 0.00 0.00 40.44 3.53
636 637 3.647771 GGTTTCCACCTCGCCCCT 61.648 66.667 0.00 0.00 40.44 4.79
637 638 4.735358 GGGTTTCCACCTCGCCCC 62.735 72.222 0.00 0.00 43.65 5.80
641 642 2.567564 ATACGCGGGTTTCCACCTCG 62.568 60.000 11.50 0.00 43.65 4.63
642 643 0.392060 AATACGCGGGTTTCCACCTC 60.392 55.000 11.50 0.00 43.65 3.85
643 644 0.392060 GAATACGCGGGTTTCCACCT 60.392 55.000 11.50 0.00 43.65 4.00
644 645 1.698714 CGAATACGCGGGTTTCCACC 61.699 60.000 11.50 0.00 43.37 4.61
645 646 1.711500 CGAATACGCGGGTTTCCAC 59.289 57.895 11.50 0.00 0.00 4.02
646 647 4.188702 CGAATACGCGGGTTTCCA 57.811 55.556 11.50 0.00 0.00 3.53
656 657 2.893404 CCCCAACCCGCGAATACG 60.893 66.667 8.23 0.00 42.93 3.06
657 658 2.515290 CCCCCAACCCGCGAATAC 60.515 66.667 8.23 0.00 0.00 1.89
658 659 4.493049 GCCCCCAACCCGCGAATA 62.493 66.667 8.23 0.00 0.00 1.75
665 666 2.673027 AAAACCTCAGCCCCCAACCC 62.673 60.000 0.00 0.00 0.00 4.11
666 667 1.152333 AAAACCTCAGCCCCCAACC 60.152 57.895 0.00 0.00 0.00 3.77
667 668 2.049435 CAAAACCTCAGCCCCCAAC 58.951 57.895 0.00 0.00 0.00 3.77
668 669 1.836604 GCAAAACCTCAGCCCCCAA 60.837 57.895 0.00 0.00 0.00 4.12
669 670 2.203625 GCAAAACCTCAGCCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
670 671 2.997315 GGCAAAACCTCAGCCCCC 60.997 66.667 0.00 0.00 42.58 5.40
671 672 3.373565 CGGCAAAACCTCAGCCCC 61.374 66.667 0.00 0.00 45.56 5.80
672 673 4.056125 GCGGCAAAACCTCAGCCC 62.056 66.667 0.00 0.00 45.56 5.19
673 674 4.404654 CGCGGCAAAACCTCAGCC 62.405 66.667 0.00 0.00 44.89 4.85
675 676 4.404654 GGCGCGGCAAAACCTCAG 62.405 66.667 29.32 0.00 35.61 3.35
685 686 3.758931 AATTTTGAGGGGCGCGGC 61.759 61.111 26.39 26.39 0.00 6.53
686 687 2.153547 AACAATTTTGAGGGGCGCGG 62.154 55.000 8.83 0.00 0.00 6.46
687 688 0.319469 AAACAATTTTGAGGGGCGCG 60.319 50.000 0.00 0.00 0.00 6.86
688 689 1.147473 CAAACAATTTTGAGGGGCGC 58.853 50.000 0.00 0.00 44.38 6.53
689 690 2.134346 CACAAACAATTTTGAGGGGCG 58.866 47.619 4.18 0.00 44.38 6.13
690 691 2.871633 CACACAAACAATTTTGAGGGGC 59.128 45.455 4.18 0.00 44.38 5.80
691 692 4.119136 GACACACAAACAATTTTGAGGGG 58.881 43.478 4.18 0.38 44.38 4.79
692 693 3.796178 CGACACACAAACAATTTTGAGGG 59.204 43.478 4.18 0.13 44.38 4.30
693 694 3.796178 CCGACACACAAACAATTTTGAGG 59.204 43.478 4.18 0.00 44.38 3.86
694 695 3.242712 GCCGACACACAAACAATTTTGAG 59.757 43.478 4.18 0.00 44.38 3.02
695 696 3.182967 GCCGACACACAAACAATTTTGA 58.817 40.909 4.18 0.00 44.38 2.69
696 697 2.283884 GGCCGACACACAAACAATTTTG 59.716 45.455 0.00 0.00 46.61 2.44
697 698 2.093973 TGGCCGACACACAAACAATTTT 60.094 40.909 0.00 0.00 0.00 1.82
698 699 1.478510 TGGCCGACACACAAACAATTT 59.521 42.857 0.00 0.00 0.00 1.82
699 700 1.107114 TGGCCGACACACAAACAATT 58.893 45.000 0.00 0.00 0.00 2.32
700 701 2.800516 TGGCCGACACACAAACAAT 58.199 47.368 0.00 0.00 0.00 2.71
701 702 4.320910 TGGCCGACACACAAACAA 57.679 50.000 0.00 0.00 0.00 2.83
709 710 4.659874 CGCAAACGTGGCCGACAC 62.660 66.667 0.00 0.00 46.78 3.67
712 713 4.912485 TTCCGCAAACGTGGCCGA 62.912 61.111 0.00 3.59 37.70 5.54
713 714 3.661025 GATTCCGCAAACGTGGCCG 62.661 63.158 0.00 1.46 37.70 6.13
714 715 2.178273 GATTCCGCAAACGTGGCC 59.822 61.111 0.00 0.00 37.70 5.36
715 716 1.154225 CAGATTCCGCAAACGTGGC 60.154 57.895 2.54 2.54 37.70 5.01
716 717 0.591170 AACAGATTCCGCAAACGTGG 59.409 50.000 0.00 0.00 37.70 4.94
717 718 2.043411 CAAACAGATTCCGCAAACGTG 58.957 47.619 0.00 0.00 37.70 4.49
718 719 1.001815 CCAAACAGATTCCGCAAACGT 60.002 47.619 0.00 0.00 37.70 3.99
719 720 1.665735 CCCAAACAGATTCCGCAAACG 60.666 52.381 0.00 0.00 39.67 3.60
720 721 1.934849 GCCCAAACAGATTCCGCAAAC 60.935 52.381 0.00 0.00 0.00 2.93
721 722 0.316841 GCCCAAACAGATTCCGCAAA 59.683 50.000 0.00 0.00 0.00 3.68
722 723 0.825425 TGCCCAAACAGATTCCGCAA 60.825 50.000 0.00 0.00 0.00 4.85
723 724 1.228398 TGCCCAAACAGATTCCGCA 60.228 52.632 0.00 0.00 0.00 5.69
724 725 1.508088 CTGCCCAAACAGATTCCGC 59.492 57.895 0.00 0.00 40.25 5.54
725 726 0.322456 TCCTGCCCAAACAGATTCCG 60.322 55.000 0.00 0.00 40.25 4.30
726 727 2.149973 ATCCTGCCCAAACAGATTCC 57.850 50.000 0.00 0.00 40.25 3.01
727 728 4.541973 AAAATCCTGCCCAAACAGATTC 57.458 40.909 0.00 0.00 40.25 2.52
728 729 4.347583 TGAAAAATCCTGCCCAAACAGATT 59.652 37.500 0.00 0.00 40.25 2.40
729 730 3.903090 TGAAAAATCCTGCCCAAACAGAT 59.097 39.130 0.00 0.00 40.25 2.90
730 731 3.069443 GTGAAAAATCCTGCCCAAACAGA 59.931 43.478 0.00 0.00 40.25 3.41
731 732 3.392882 GTGAAAAATCCTGCCCAAACAG 58.607 45.455 0.00 0.00 37.42 3.16
732 733 2.103941 GGTGAAAAATCCTGCCCAAACA 59.896 45.455 0.00 0.00 0.00 2.83
733 734 2.103941 TGGTGAAAAATCCTGCCCAAAC 59.896 45.455 0.00 0.00 0.00 2.93
734 735 2.402564 TGGTGAAAAATCCTGCCCAAA 58.597 42.857 0.00 0.00 0.00 3.28
735 736 2.094100 TGGTGAAAAATCCTGCCCAA 57.906 45.000 0.00 0.00 0.00 4.12
736 737 2.323999 ATGGTGAAAAATCCTGCCCA 57.676 45.000 0.00 0.00 0.00 5.36
737 738 3.701205 AAATGGTGAAAAATCCTGCCC 57.299 42.857 0.00 0.00 0.00 5.36
738 739 4.452114 GTCAAAATGGTGAAAAATCCTGCC 59.548 41.667 0.00 0.00 0.00 4.85
739 740 4.150451 CGTCAAAATGGTGAAAAATCCTGC 59.850 41.667 0.00 0.00 0.00 4.85
740 741 5.288804 ACGTCAAAATGGTGAAAAATCCTG 58.711 37.500 0.00 0.00 0.00 3.86
741 742 5.529581 ACGTCAAAATGGTGAAAAATCCT 57.470 34.783 0.00 0.00 0.00 3.24
742 743 7.883229 ATAACGTCAAAATGGTGAAAAATCC 57.117 32.000 0.00 0.00 0.00 3.01
746 747 8.744011 CGTAAAATAACGTCAAAATGGTGAAAA 58.256 29.630 0.00 0.00 38.07 2.29
747 748 7.096558 GCGTAAAATAACGTCAAAATGGTGAAA 60.097 33.333 0.00 0.00 44.64 2.69
748 749 6.360148 GCGTAAAATAACGTCAAAATGGTGAA 59.640 34.615 0.00 0.00 44.64 3.18
749 750 5.852229 GCGTAAAATAACGTCAAAATGGTGA 59.148 36.000 0.00 0.00 44.64 4.02
750 751 5.219695 CGCGTAAAATAACGTCAAAATGGTG 60.220 40.000 0.00 0.00 44.64 4.17
751 752 4.847217 CGCGTAAAATAACGTCAAAATGGT 59.153 37.500 0.00 0.00 44.64 3.55
752 753 4.847217 ACGCGTAAAATAACGTCAAAATGG 59.153 37.500 11.67 0.00 44.64 3.16
753 754 5.961393 ACGCGTAAAATAACGTCAAAATG 57.039 34.783 11.67 0.00 44.64 2.32
760 761 0.991344 CCCGACGCGTAAAATAACGT 59.009 50.000 13.97 0.00 44.64 3.99
761 762 0.298411 CCCCGACGCGTAAAATAACG 59.702 55.000 13.97 9.82 45.58 3.18
762 763 0.026674 GCCCCGACGCGTAAAATAAC 59.973 55.000 13.97 0.00 0.00 1.89
763 764 0.108233 AGCCCCGACGCGTAAAATAA 60.108 50.000 13.97 0.00 0.00 1.40
764 765 0.108233 AAGCCCCGACGCGTAAAATA 60.108 50.000 13.97 0.00 0.00 1.40
765 766 0.956902 AAAGCCCCGACGCGTAAAAT 60.957 50.000 13.97 0.00 0.00 1.82
766 767 1.165284 AAAAGCCCCGACGCGTAAAA 61.165 50.000 13.97 0.00 0.00 1.52
767 768 1.165284 AAAAAGCCCCGACGCGTAAA 61.165 50.000 13.97 0.00 0.00 2.01
768 769 1.597578 AAAAAGCCCCGACGCGTAA 60.598 52.632 13.97 0.00 0.00 3.18
769 770 2.030862 AAAAAGCCCCGACGCGTA 59.969 55.556 13.97 0.00 0.00 4.42
770 771 3.656045 CAAAAAGCCCCGACGCGT 61.656 61.111 13.85 13.85 0.00 6.01
772 773 3.896863 CTGCAAAAAGCCCCGACGC 62.897 63.158 0.00 0.00 44.83 5.19
773 774 2.255252 CTGCAAAAAGCCCCGACG 59.745 61.111 0.00 0.00 44.83 5.12
774 775 2.650778 CCTGCAAAAAGCCCCGAC 59.349 61.111 0.00 0.00 44.83 4.79
775 776 2.600173 CCCTGCAAAAAGCCCCGA 60.600 61.111 0.00 0.00 44.83 5.14
776 777 2.917227 ACCCTGCAAAAAGCCCCG 60.917 61.111 0.00 0.00 44.83 5.73
777 778 2.099652 GACACCCTGCAAAAAGCCCC 62.100 60.000 0.00 0.00 44.83 5.80
778 779 1.367471 GACACCCTGCAAAAAGCCC 59.633 57.895 0.00 0.00 44.83 5.19
779 780 1.115326 AGGACACCCTGCAAAAAGCC 61.115 55.000 0.00 0.00 42.42 4.35
780 781 1.541588 CTAGGACACCCTGCAAAAAGC 59.458 52.381 0.00 0.00 44.15 3.51
781 782 3.077359 CTCTAGGACACCCTGCAAAAAG 58.923 50.000 0.00 0.00 44.15 2.27
782 783 2.441750 ACTCTAGGACACCCTGCAAAAA 59.558 45.455 0.00 0.00 44.15 1.94
783 784 2.054799 ACTCTAGGACACCCTGCAAAA 58.945 47.619 0.00 0.00 44.15 2.44
784 785 1.729586 ACTCTAGGACACCCTGCAAA 58.270 50.000 0.00 0.00 44.15 3.68
785 786 1.729586 AACTCTAGGACACCCTGCAA 58.270 50.000 0.00 0.00 44.15 4.08
786 787 2.176889 GTAACTCTAGGACACCCTGCA 58.823 52.381 0.00 0.00 44.15 4.41
787 788 2.427812 GAGTAACTCTAGGACACCCTGC 59.572 54.545 0.00 0.00 44.15 4.85
788 789 3.970842 AGAGTAACTCTAGGACACCCTG 58.029 50.000 0.00 0.00 44.15 4.45
789 790 5.793034 TTAGAGTAACTCTAGGACACCCT 57.207 43.478 0.00 0.00 42.92 4.34
790 791 7.231115 CCTTATTAGAGTAACTCTAGGACACCC 59.769 44.444 0.00 0.00 42.92 4.61
791 792 7.779326 ACCTTATTAGAGTAACTCTAGGACACC 59.221 40.741 0.00 0.00 42.92 4.16
792 793 8.750515 ACCTTATTAGAGTAACTCTAGGACAC 57.249 38.462 0.00 0.00 42.92 3.67
793 794 9.186837 CAACCTTATTAGAGTAACTCTAGGACA 57.813 37.037 0.00 0.00 42.92 4.02
794 795 9.406113 TCAACCTTATTAGAGTAACTCTAGGAC 57.594 37.037 0.00 0.00 42.92 3.85
798 799 9.144298 CCCATCAACCTTATTAGAGTAACTCTA 57.856 37.037 0.00 0.00 41.50 2.43
799 800 7.419172 GCCCATCAACCTTATTAGAGTAACTCT 60.419 40.741 0.00 0.00 43.83 3.24
800 801 6.706716 GCCCATCAACCTTATTAGAGTAACTC 59.293 42.308 0.00 0.00 0.00 3.01
801 802 6.387220 AGCCCATCAACCTTATTAGAGTAACT 59.613 38.462 0.00 0.00 0.00 2.24
802 803 6.592870 AGCCCATCAACCTTATTAGAGTAAC 58.407 40.000 0.00 0.00 0.00 2.50
803 804 6.824958 AGCCCATCAACCTTATTAGAGTAA 57.175 37.500 0.00 0.00 0.00 2.24
804 805 6.409234 CCAAGCCCATCAACCTTATTAGAGTA 60.409 42.308 0.00 0.00 0.00 2.59
805 806 5.440610 CAAGCCCATCAACCTTATTAGAGT 58.559 41.667 0.00 0.00 0.00 3.24
806 807 4.823989 CCAAGCCCATCAACCTTATTAGAG 59.176 45.833 0.00 0.00 0.00 2.43
807 808 4.229582 ACCAAGCCCATCAACCTTATTAGA 59.770 41.667 0.00 0.00 0.00 2.10
808 809 4.536765 ACCAAGCCCATCAACCTTATTAG 58.463 43.478 0.00 0.00 0.00 1.73
818 819 1.915228 GAGCCTACCAAGCCCATCA 59.085 57.895 0.00 0.00 0.00 3.07
842 843 1.669440 GCCTGTTGTACGAGTGGGA 59.331 57.895 0.00 0.00 0.00 4.37
964 976 1.198094 GGGTGGATTTTGGTTGGGGG 61.198 60.000 0.00 0.00 0.00 5.40
1182 1194 2.203938 AGCCAGGGGACGAGGAAA 60.204 61.111 0.00 0.00 32.87 3.13
2071 2326 6.495181 TCCCTGCAATAATAAAAAGGTTCACA 59.505 34.615 0.00 0.00 0.00 3.58
2072 2327 6.930731 TCCCTGCAATAATAAAAAGGTTCAC 58.069 36.000 0.00 0.00 0.00 3.18
2120 2375 6.478512 AATTCAAAAACCAAGTTGCCTCTA 57.521 33.333 0.00 0.00 0.00 2.43
2239 2495 0.458197 GTGCAATATTTGGCTGCGCA 60.458 50.000 10.98 10.98 44.16 6.09
2449 2707 9.592196 AGGGTAAAGTATACATCGGATAACTAA 57.408 33.333 5.50 0.00 0.00 2.24
2450 2708 9.236006 GAGGGTAAAGTATACATCGGATAACTA 57.764 37.037 5.50 0.00 0.00 2.24
2451 2709 7.727186 TGAGGGTAAAGTATACATCGGATAACT 59.273 37.037 5.50 0.00 0.00 2.24
2452 2710 7.811713 GTGAGGGTAAAGTATACATCGGATAAC 59.188 40.741 5.50 0.00 0.00 1.89
2453 2711 7.039504 GGTGAGGGTAAAGTATACATCGGATAA 60.040 40.741 5.50 0.00 0.00 1.75
2454 2712 6.435277 GGTGAGGGTAAAGTATACATCGGATA 59.565 42.308 5.50 0.00 0.00 2.59
2455 2713 5.245526 GGTGAGGGTAAAGTATACATCGGAT 59.754 44.000 5.50 0.00 0.00 4.18
2456 2714 4.586001 GGTGAGGGTAAAGTATACATCGGA 59.414 45.833 5.50 0.00 0.00 4.55
2457 2715 4.342951 TGGTGAGGGTAAAGTATACATCGG 59.657 45.833 5.50 0.00 0.00 4.18
2458 2716 5.524971 TGGTGAGGGTAAAGTATACATCG 57.475 43.478 5.50 0.00 0.00 3.84
2459 2717 9.654663 GAATATGGTGAGGGTAAAGTATACATC 57.345 37.037 5.50 0.00 0.00 3.06
2460 2718 9.393786 AGAATATGGTGAGGGTAAAGTATACAT 57.606 33.333 5.50 0.00 0.00 2.29
2461 2719 8.792830 AGAATATGGTGAGGGTAAAGTATACA 57.207 34.615 5.50 0.00 0.00 2.29
2464 2722 9.845214 ATCTAGAATATGGTGAGGGTAAAGTAT 57.155 33.333 0.00 0.00 0.00 2.12
2465 2723 9.670442 AATCTAGAATATGGTGAGGGTAAAGTA 57.330 33.333 0.00 0.00 0.00 2.24
2466 2724 8.568617 AATCTAGAATATGGTGAGGGTAAAGT 57.431 34.615 0.00 0.00 0.00 2.66
2467 2725 9.853177 AAAATCTAGAATATGGTGAGGGTAAAG 57.147 33.333 0.00 0.00 0.00 1.85
2468 2726 9.627123 CAAAATCTAGAATATGGTGAGGGTAAA 57.373 33.333 0.00 0.00 0.00 2.01
2469 2727 8.998814 TCAAAATCTAGAATATGGTGAGGGTAA 58.001 33.333 0.00 0.00 0.00 2.85
2470 2728 8.561536 TCAAAATCTAGAATATGGTGAGGGTA 57.438 34.615 0.00 0.00 0.00 3.69
2471 2729 7.451731 TCAAAATCTAGAATATGGTGAGGGT 57.548 36.000 0.00 0.00 0.00 4.34
2513 2771 7.885297 TCAGATCAAAATCTTACCAAAACCTG 58.115 34.615 0.00 0.00 40.38 4.00
2522 2780 9.956720 CATACCCAAATCAGATCAAAATCTTAC 57.043 33.333 0.00 0.00 40.38 2.34
2536 2794 2.357050 CCTGCTGTCCATACCCAAATCA 60.357 50.000 0.00 0.00 0.00 2.57
2554 2812 3.181439 ACTTTTTGTCTTCCCCTCTCCTG 60.181 47.826 0.00 0.00 0.00 3.86
2555 2813 3.056832 ACTTTTTGTCTTCCCCTCTCCT 58.943 45.455 0.00 0.00 0.00 3.69
2556 2814 3.510531 ACTTTTTGTCTTCCCCTCTCC 57.489 47.619 0.00 0.00 0.00 3.71
2557 2815 6.238648 TCATAACTTTTTGTCTTCCCCTCTC 58.761 40.000 0.00 0.00 0.00 3.20
2558 2816 6.200878 TCATAACTTTTTGTCTTCCCCTCT 57.799 37.500 0.00 0.00 0.00 3.69
2559 2817 7.176690 TCAATCATAACTTTTTGTCTTCCCCTC 59.823 37.037 0.00 0.00 0.00 4.30
2560 2818 7.010160 TCAATCATAACTTTTTGTCTTCCCCT 58.990 34.615 0.00 0.00 0.00 4.79
2561 2819 7.039714 ACTCAATCATAACTTTTTGTCTTCCCC 60.040 37.037 0.00 0.00 0.00 4.81
2753 3012 1.357761 TCCCCCTCCACTTTGATTTCC 59.642 52.381 0.00 0.00 0.00 3.13
2754 3013 2.621668 CCTCCCCCTCCACTTTGATTTC 60.622 54.545 0.00 0.00 0.00 2.17
2755 3014 1.359130 CCTCCCCCTCCACTTTGATTT 59.641 52.381 0.00 0.00 0.00 2.17
2756 3015 1.002857 CCTCCCCCTCCACTTTGATT 58.997 55.000 0.00 0.00 0.00 2.57
2757 3016 1.575447 GCCTCCCCCTCCACTTTGAT 61.575 60.000 0.00 0.00 0.00 2.57
2790 3049 0.036875 CTTCAGCTCCTTCCCGGTTT 59.963 55.000 0.00 0.00 0.00 3.27
2804 3063 3.056465 GGAGTTGGTAGTGTCCTCTTCAG 60.056 52.174 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.