Multiple sequence alignment - TraesCS6B01G228600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G228600 chr6B 100.000 4990 0 0 1 4990 362869013 362874002 0.000000e+00 9215.0
1 TraesCS6B01G228600 chr6B 100.000 2880 0 0 5233 8112 362874245 362877124 0.000000e+00 5319.0
2 TraesCS6B01G228600 chr6B 97.864 749 14 2 1446 2193 299051819 299052566 0.000000e+00 1293.0
3 TraesCS6B01G228600 chr6B 91.088 763 61 6 7352 8111 718589908 718589150 0.000000e+00 1026.0
4 TraesCS6B01G228600 chr6B 97.723 527 12 0 2693 3219 299052575 299053101 0.000000e+00 907.0
5 TraesCS6B01G228600 chr6B 98.710 465 5 1 2189 2652 476705874 476706338 0.000000e+00 824.0
6 TraesCS6B01G228600 chr6B 98.495 465 6 1 2189 2652 476706816 476707280 0.000000e+00 819.0
7 TraesCS6B01G228600 chr6B 98.495 465 6 1 2189 2652 476707287 476707751 0.000000e+00 819.0
8 TraesCS6B01G228600 chr6B 100.000 29 0 0 6811 6839 113532419 113532447 4.000000e-03 54.7
9 TraesCS6B01G228600 chr6D 96.251 1787 39 8 3226 4990 189419263 189417483 0.000000e+00 2904.0
10 TraesCS6B01G228600 chr6D 96.368 1597 43 3 5233 6814 189417440 189415844 0.000000e+00 2614.0
11 TraesCS6B01G228600 chr6D 93.758 753 37 7 6843 7587 189415846 189415096 0.000000e+00 1122.0
12 TraesCS6B01G228600 chr6D 93.769 674 20 8 697 1348 189419990 189419317 0.000000e+00 992.0
13 TraesCS6B01G228600 chr6D 88.612 641 48 11 1 640 189425933 189425317 0.000000e+00 756.0
14 TraesCS6B01G228600 chr6D 98.750 80 1 0 1360 1439 189419334 189419255 8.490000e-30 143.0
15 TraesCS6B01G228600 chr6D 96.875 32 1 0 6808 6839 298214003 298214034 4.000000e-03 54.7
16 TraesCS6B01G228600 chr7B 98.131 749 13 1 1446 2193 701477162 701476414 0.000000e+00 1304.0
17 TraesCS6B01G228600 chr7B 95.194 749 31 3 1446 2193 414040072 414040816 0.000000e+00 1179.0
18 TraesCS6B01G228600 chr7B 99.477 574 3 0 2652 3225 701476428 701475855 0.000000e+00 1044.0
19 TraesCS6B01G228600 chr7B 95.304 575 26 1 2652 3225 414040802 414041376 0.000000e+00 911.0
20 TraesCS6B01G228600 chr7B 98.707 464 5 1 2190 2652 732519818 732519355 0.000000e+00 822.0
21 TraesCS6B01G228600 chr7B 86.154 65 8 1 518 582 530674911 530674974 1.460000e-07 69.4
22 TraesCS6B01G228600 chr2A 97.864 749 15 1 1446 2193 761202330 761203078 0.000000e+00 1293.0
23 TraesCS6B01G228600 chr2A 99.130 575 5 0 2652 3226 761203064 761203638 0.000000e+00 1035.0
24 TraesCS6B01G228600 chr2A 98.291 468 6 2 2187 2653 561148214 561148680 0.000000e+00 819.0
25 TraesCS6B01G228600 chr2B 95.861 749 21 2 1446 2193 567988552 567989291 0.000000e+00 1203.0
26 TraesCS6B01G228600 chr2B 95.327 749 30 3 1446 2193 554090569 554089825 0.000000e+00 1184.0
27 TraesCS6B01G228600 chr2B 98.094 577 11 0 2652 3228 567989277 567989853 0.000000e+00 1005.0
28 TraesCS6B01G228600 chr2B 96.014 577 23 0 2652 3228 554089839 554089263 0.000000e+00 939.0
29 TraesCS6B01G228600 chr2B 98.918 462 5 0 2191 2652 705606974 705606513 0.000000e+00 826.0
30 TraesCS6B01G228600 chr2B 88.889 45 2 2 6797 6839 226474718 226474761 1.500000e-02 52.8
31 TraesCS6B01G228600 chr5B 94.793 749 29 5 1446 2193 640930971 640931710 0.000000e+00 1158.0
32 TraesCS6B01G228600 chr5B 95.304 575 27 0 2652 3226 640931696 640932270 0.000000e+00 913.0
33 TraesCS6B01G228600 chr5B 96.970 33 0 1 6807 6839 531861499 531861530 4.000000e-03 54.7
34 TraesCS6B01G228600 chr5B 96.970 33 0 1 6807 6839 532310418 532310449 4.000000e-03 54.7
35 TraesCS6B01G228600 chr7D 91.481 763 60 4 7353 8112 610709909 610710669 0.000000e+00 1044.0
36 TraesCS6B01G228600 chr7D 91.350 763 61 4 7353 8112 568379505 568380265 0.000000e+00 1038.0
37 TraesCS6B01G228600 chr7D 90.838 764 61 7 7354 8112 91121425 91122184 0.000000e+00 1014.0
38 TraesCS6B01G228600 chr3D 91.327 761 60 5 7355 8112 306014641 306013884 0.000000e+00 1035.0
39 TraesCS6B01G228600 chr3D 77.729 229 30 15 358 586 537697831 537698038 3.980000e-23 121.0
40 TraesCS6B01G228600 chr1D 91.444 748 58 5 7353 8097 99802978 99803722 0.000000e+00 1022.0
41 TraesCS6B01G228600 chr5A 90.826 763 65 4 7353 8112 277731632 277732392 0.000000e+00 1016.0
42 TraesCS6B01G228600 chr5A 84.397 282 29 12 2652 2929 169966136 169965866 6.240000e-66 263.0
43 TraesCS6B01G228600 chr7A 90.921 760 62 6 7356 8112 183660965 183661720 0.000000e+00 1014.0
44 TraesCS6B01G228600 chr7A 81.340 209 32 5 344 552 294328265 294328064 6.510000e-36 163.0
45 TraesCS6B01G228600 chr7A 75.122 205 35 11 364 568 179885518 179885706 1.880000e-11 82.4
46 TraesCS6B01G228600 chr5D 90.802 761 65 4 7355 8112 501157738 501156980 0.000000e+00 1013.0
47 TraesCS6B01G228600 chr5D 81.457 302 41 12 284 584 98655526 98655813 4.900000e-57 233.0
48 TraesCS6B01G228600 chr1A 91.386 743 47 5 1446 2188 479289336 479288611 0.000000e+00 1002.0
49 TraesCS6B01G228600 chr1A 91.455 749 33 14 1446 2193 539592456 539591738 0.000000e+00 1000.0
50 TraesCS6B01G228600 chr1A 95.710 303 10 2 2930 3230 539591430 539591129 1.220000e-132 484.0
51 TraesCS6B01G228600 chr1A 93.603 297 19 0 2930 3226 479288317 479288021 2.080000e-120 444.0
52 TraesCS6B01G228600 chr1A 91.244 217 13 3 2720 2930 479288569 479288353 2.860000e-74 291.0
53 TraesCS6B01G228600 chr1A 87.402 127 13 3 456 582 553698193 553698316 8.490000e-30 143.0
54 TraesCS6B01G228600 chr1A 97.143 35 0 1 6805 6839 57407825 57407792 3.160000e-04 58.4
55 TraesCS6B01G228600 chr3A 98.704 463 5 1 2191 2652 729534840 729535302 0.000000e+00 821.0
56 TraesCS6B01G228600 chr3B 98.291 468 7 1 2191 2657 807232381 807232848 0.000000e+00 819.0
57 TraesCS6B01G228600 chr3B 98.081 469 7 2 2191 2657 159958961 159958493 0.000000e+00 815.0
58 TraesCS6B01G228600 chr3B 80.861 209 31 5 375 583 742204745 742204546 1.090000e-33 156.0
59 TraesCS6B01G228600 chr4D 82.063 223 33 3 351 573 116786006 116786221 5.000000e-42 183.0
60 TraesCS6B01G228600 chr6A 100.000 33 0 0 6807 6839 146529480 146529512 2.440000e-05 62.1
61 TraesCS6B01G228600 chr4B 97.059 34 0 1 6806 6839 651873739 651873771 1.000000e-03 56.5
62 TraesCS6B01G228600 chrUn 100.000 29 0 0 6812 6840 12440607 12440579 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G228600 chr6B 362869013 362877124 8111 False 7267.000000 9215 100.000000 1 8112 2 chr6B.!!$F3 8111
1 TraesCS6B01G228600 chr6B 299051819 299053101 1282 False 1100.000000 1293 97.793500 1446 3219 2 chr6B.!!$F2 1773
2 TraesCS6B01G228600 chr6B 718589150 718589908 758 True 1026.000000 1026 91.088000 7352 8111 1 chr6B.!!$R1 759
3 TraesCS6B01G228600 chr6B 476705874 476707751 1877 False 820.666667 824 98.566667 2189 2652 3 chr6B.!!$F4 463
4 TraesCS6B01G228600 chr6D 189415096 189419990 4894 True 1555.000000 2904 95.779200 697 7587 5 chr6D.!!$R2 6890
5 TraesCS6B01G228600 chr6D 189425317 189425933 616 True 756.000000 756 88.612000 1 640 1 chr6D.!!$R1 639
6 TraesCS6B01G228600 chr7B 701475855 701477162 1307 True 1174.000000 1304 98.804000 1446 3225 2 chr7B.!!$R2 1779
7 TraesCS6B01G228600 chr7B 414040072 414041376 1304 False 1045.000000 1179 95.249000 1446 3225 2 chr7B.!!$F2 1779
8 TraesCS6B01G228600 chr2A 761202330 761203638 1308 False 1164.000000 1293 98.497000 1446 3226 2 chr2A.!!$F2 1780
9 TraesCS6B01G228600 chr2B 567988552 567989853 1301 False 1104.000000 1203 96.977500 1446 3228 2 chr2B.!!$F2 1782
10 TraesCS6B01G228600 chr2B 554089263 554090569 1306 True 1061.500000 1184 95.670500 1446 3228 2 chr2B.!!$R2 1782
11 TraesCS6B01G228600 chr5B 640930971 640932270 1299 False 1035.500000 1158 95.048500 1446 3226 2 chr5B.!!$F3 1780
12 TraesCS6B01G228600 chr7D 610709909 610710669 760 False 1044.000000 1044 91.481000 7353 8112 1 chr7D.!!$F3 759
13 TraesCS6B01G228600 chr7D 568379505 568380265 760 False 1038.000000 1038 91.350000 7353 8112 1 chr7D.!!$F2 759
14 TraesCS6B01G228600 chr7D 91121425 91122184 759 False 1014.000000 1014 90.838000 7354 8112 1 chr7D.!!$F1 758
15 TraesCS6B01G228600 chr3D 306013884 306014641 757 True 1035.000000 1035 91.327000 7355 8112 1 chr3D.!!$R1 757
16 TraesCS6B01G228600 chr1D 99802978 99803722 744 False 1022.000000 1022 91.444000 7353 8097 1 chr1D.!!$F1 744
17 TraesCS6B01G228600 chr5A 277731632 277732392 760 False 1016.000000 1016 90.826000 7353 8112 1 chr5A.!!$F1 759
18 TraesCS6B01G228600 chr7A 183660965 183661720 755 False 1014.000000 1014 90.921000 7356 8112 1 chr7A.!!$F2 756
19 TraesCS6B01G228600 chr5D 501156980 501157738 758 True 1013.000000 1013 90.802000 7355 8112 1 chr5D.!!$R1 757
20 TraesCS6B01G228600 chr1A 539591129 539592456 1327 True 742.000000 1000 93.582500 1446 3230 2 chr1A.!!$R3 1784
21 TraesCS6B01G228600 chr1A 479288021 479289336 1315 True 579.000000 1002 92.077667 1446 3226 3 chr1A.!!$R2 1780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 644 0.036388 TTCCTCTTAGCCGGTTGCAG 60.036 55.000 1.90 0.00 44.83 4.41 F
645 646 0.741221 CCTCTTAGCCGGTTGCAGAC 60.741 60.000 1.90 0.00 44.83 3.51 F
646 647 0.741221 CTCTTAGCCGGTTGCAGACC 60.741 60.000 1.90 7.71 44.83 3.85 F
1165 1188 0.887933 ATTTGGTTAGGGTGCGCTTG 59.112 50.000 9.73 0.00 0.00 4.01 F
1345 1368 0.966920 TGGAGGAGACTTTGTCCGTC 59.033 55.000 0.00 0.00 44.43 4.79 F
1755 1778 1.007238 CCTCCTCCCTCCTCTACAACA 59.993 57.143 0.00 0.00 0.00 3.33 F
3396 3476 0.388294 GTCTGCCTACGTATGTCCCC 59.612 60.000 0.00 0.00 0.00 4.81 F
4160 4242 0.727398 GGGTCATCGCTTTAGCACAC 59.273 55.000 2.29 0.00 42.21 3.82 F
5700 5802 0.449388 GAGCAGCTCCAATTTCACCG 59.551 55.000 11.84 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2233 0.105142 AGGAGTACCCGGGTGCATAT 60.105 55.000 38.49 22.01 40.87 1.78 R
2610 2635 3.043999 GCACCCGGGCCTCACTATT 62.044 63.158 24.08 0.00 0.00 1.73 R
2914 2955 3.627577 CGGAAAATGGATGAGGAAACGAT 59.372 43.478 0.00 0.00 0.00 3.73 R
3229 3309 0.692476 AGCAGGAACAGTATGCCACA 59.308 50.000 2.49 0.00 42.53 4.17 R
3231 3311 1.073763 ACAAGCAGGAACAGTATGCCA 59.926 47.619 2.49 0.00 42.53 4.92 R
3650 3730 1.021390 AGCGCAACATACTCAGTGGC 61.021 55.000 11.47 0.00 32.52 5.01 R
4935 5037 0.028770 GCAGCGCGCACCATAAAATA 59.971 50.000 35.10 0.00 41.79 1.40 R
5992 6094 1.233285 CCTGCAGAAGAGTGTGTGGC 61.233 60.000 17.39 0.00 0.00 5.01 R
7561 7687 0.758734 CCAGCATAACCTCCGGATCA 59.241 55.000 3.57 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.194640 CCAATGACCACAAGGATAGTCTG 58.805 47.826 0.00 0.00 38.69 3.51
55 56 2.540383 AGGATAGTCTGTCTGGCACAA 58.460 47.619 0.00 0.00 38.70 3.33
66 67 3.010027 TGTCTGGCACAAGGGATATTGAA 59.990 43.478 0.00 0.00 38.70 2.69
73 74 4.790766 GCACAAGGGATATTGAAATCTGCG 60.791 45.833 0.00 0.00 34.20 5.18
104 105 8.180920 CGAGTAGAGTTTAAGTAGGGTAGTTTC 58.819 40.741 0.00 0.00 0.00 2.78
114 115 7.761038 AAGTAGGGTAGTTTCTTTTCAATGG 57.239 36.000 0.00 0.00 0.00 3.16
130 131 7.441890 TTTCAATGGAACTCGTTTGCTAATA 57.558 32.000 0.00 0.00 31.35 0.98
132 133 8.725405 TTCAATGGAACTCGTTTGCTAATATA 57.275 30.769 0.00 0.00 0.00 0.86
167 168 7.984391 ACGTAGATGAATTTTATGTTGCATGA 58.016 30.769 0.00 0.00 0.00 3.07
169 170 8.898792 CGTAGATGAATTTTATGTTGCATGATG 58.101 33.333 0.00 0.00 0.00 3.07
172 173 8.471609 AGATGAATTTTATGTTGCATGATGTGA 58.528 29.630 0.00 0.00 0.00 3.58
191 192 9.473007 TGATGTGATATGAAAATAAGGGTTTGA 57.527 29.630 0.00 0.00 0.00 2.69
239 240 6.051717 CCAGACAAATGAGTATAGGGTTGAG 58.948 44.000 0.00 0.00 0.00 3.02
245 246 6.980416 AATGAGTATAGGGTTGAGTAGTCC 57.020 41.667 0.00 0.00 0.00 3.85
246 247 5.461516 TGAGTATAGGGTTGAGTAGTCCA 57.538 43.478 0.00 0.00 0.00 4.02
252 253 3.853207 AGGGTTGAGTAGTCCAGTTGTA 58.147 45.455 0.00 0.00 0.00 2.41
267 268 4.872691 CCAGTTGTAGATGCTCTTAGTTGG 59.127 45.833 0.00 0.00 0.00 3.77
268 269 5.337571 CCAGTTGTAGATGCTCTTAGTTGGA 60.338 44.000 0.00 0.00 0.00 3.53
269 270 6.166279 CAGTTGTAGATGCTCTTAGTTGGAA 58.834 40.000 0.00 0.00 0.00 3.53
270 271 6.312426 CAGTTGTAGATGCTCTTAGTTGGAAG 59.688 42.308 0.00 0.00 0.00 3.46
271 272 6.014156 AGTTGTAGATGCTCTTAGTTGGAAGT 60.014 38.462 0.00 0.00 0.00 3.01
272 273 5.724328 TGTAGATGCTCTTAGTTGGAAGTG 58.276 41.667 0.00 0.00 0.00 3.16
273 274 3.604582 AGATGCTCTTAGTTGGAAGTGC 58.395 45.455 3.84 3.84 43.18 4.40
299 300 0.179234 TTGGCTCTCGTGGTGAACAA 59.821 50.000 0.00 0.00 0.00 2.83
306 307 5.324697 GCTCTCGTGGTGAACAATAAATTC 58.675 41.667 0.00 0.00 0.00 2.17
370 371 2.025981 TGCATGGAAGATGCTTAGGTGT 60.026 45.455 8.05 0.00 44.79 4.16
373 374 4.769688 CATGGAAGATGCTTAGGTGTGTA 58.230 43.478 0.00 0.00 0.00 2.90
391 392 4.023536 TGTGTAAGGTCCGCTTCAAATTTC 60.024 41.667 0.00 0.00 0.00 2.17
454 455 5.011023 AGAGGAAGCAAAATTAGGGTTTGTG 59.989 40.000 0.00 0.00 38.09 3.33
458 459 6.710295 GGAAGCAAAATTAGGGTTTGTGAAAT 59.290 34.615 0.00 0.00 38.09 2.17
493 494 5.939883 TCATCTACTGTTCTGACCCAATTTG 59.060 40.000 0.00 0.00 0.00 2.32
531 532 5.533482 AGCTACTCGTATGTCCAAATGATC 58.467 41.667 0.00 0.00 0.00 2.92
540 541 9.389755 TCGTATGTCCAAATGATCTGAAATTTA 57.610 29.630 0.00 0.00 0.00 1.40
545 546 8.587608 TGTCCAAATGATCTGAAATTTAAAGCT 58.412 29.630 0.00 0.00 0.00 3.74
546 547 8.866956 GTCCAAATGATCTGAAATTTAAAGCTG 58.133 33.333 0.00 0.00 0.00 4.24
553 554 7.613022 TGATCTGAAATTTAAAGCTGACCTCAT 59.387 33.333 0.00 0.00 0.00 2.90
640 641 5.890424 TTTAATTTCCTCTTAGCCGGTTG 57.110 39.130 1.90 0.00 0.00 3.77
641 642 1.751437 ATTTCCTCTTAGCCGGTTGC 58.249 50.000 1.90 0.00 41.71 4.17
642 643 0.398696 TTTCCTCTTAGCCGGTTGCA 59.601 50.000 1.90 0.00 44.83 4.08
643 644 0.036388 TTCCTCTTAGCCGGTTGCAG 60.036 55.000 1.90 0.00 44.83 4.41
644 645 0.902984 TCCTCTTAGCCGGTTGCAGA 60.903 55.000 1.90 2.38 44.83 4.26
645 646 0.741221 CCTCTTAGCCGGTTGCAGAC 60.741 60.000 1.90 0.00 44.83 3.51
646 647 0.741221 CTCTTAGCCGGTTGCAGACC 60.741 60.000 1.90 7.71 44.83 3.85
657 658 3.601443 GTTGCAGACCAGTAGATGAGT 57.399 47.619 0.00 0.00 0.00 3.41
658 659 3.516615 GTTGCAGACCAGTAGATGAGTC 58.483 50.000 0.00 0.00 32.38 3.36
659 660 3.093057 TGCAGACCAGTAGATGAGTCT 57.907 47.619 0.00 0.00 38.94 3.24
664 665 4.929479 AGACCAGTAGATGAGTCTGAACT 58.071 43.478 0.00 0.00 37.76 3.01
680 681 5.340010 CTGAACTCAGAAATGCATATCGG 57.660 43.478 0.00 0.00 46.59 4.18
681 682 4.129380 TGAACTCAGAAATGCATATCGGG 58.871 43.478 0.00 0.00 0.00 5.14
682 683 3.845781 ACTCAGAAATGCATATCGGGT 57.154 42.857 0.00 0.00 0.00 5.28
683 684 4.156455 ACTCAGAAATGCATATCGGGTT 57.844 40.909 0.00 0.00 0.00 4.11
684 685 5.290493 ACTCAGAAATGCATATCGGGTTA 57.710 39.130 0.00 0.00 0.00 2.85
685 686 5.300752 ACTCAGAAATGCATATCGGGTTAG 58.699 41.667 0.00 0.00 0.00 2.34
686 687 5.163301 ACTCAGAAATGCATATCGGGTTAGT 60.163 40.000 0.00 0.00 0.00 2.24
687 688 5.680619 TCAGAAATGCATATCGGGTTAGTT 58.319 37.500 0.00 0.00 0.00 2.24
688 689 6.822442 TCAGAAATGCATATCGGGTTAGTTA 58.178 36.000 0.00 0.00 0.00 2.24
689 690 6.929049 TCAGAAATGCATATCGGGTTAGTTAG 59.071 38.462 0.00 0.00 0.00 2.34
690 691 6.929049 CAGAAATGCATATCGGGTTAGTTAGA 59.071 38.462 0.00 0.00 0.00 2.10
691 692 6.929606 AGAAATGCATATCGGGTTAGTTAGAC 59.070 38.462 0.00 0.00 0.00 2.59
692 693 6.420913 AATGCATATCGGGTTAGTTAGACT 57.579 37.500 0.00 0.00 0.00 3.24
693 694 5.449107 TGCATATCGGGTTAGTTAGACTC 57.551 43.478 0.00 0.00 0.00 3.36
694 695 4.280174 TGCATATCGGGTTAGTTAGACTCC 59.720 45.833 0.00 0.00 0.00 3.85
695 696 4.523558 GCATATCGGGTTAGTTAGACTCCT 59.476 45.833 0.00 0.00 0.00 3.69
704 705 6.212187 GGGTTAGTTAGACTCCTTTAACCTCA 59.788 42.308 10.11 0.00 39.77 3.86
710 711 5.346181 AGACTCCTTTAACCTCATAGCAC 57.654 43.478 0.00 0.00 0.00 4.40
720 721 1.009829 CTCATAGCACCGCTGGTTTC 58.990 55.000 0.00 0.00 40.10 2.78
722 723 1.449601 ATAGCACCGCTGGTTTCCG 60.450 57.895 0.00 0.00 40.10 4.30
782 791 6.138761 GCAATAATAGGAAAGTGCAAGATCG 58.861 40.000 0.00 0.00 32.29 3.69
831 840 2.994995 TCGAAGAAGAGGCGGGCA 60.995 61.111 3.78 0.00 0.00 5.36
857 869 5.277047 GCCAAGAGTGAAAGTGAGAAAAAG 58.723 41.667 0.00 0.00 0.00 2.27
940 953 2.096248 GAGAGAGAAAGGAGAGGCGAA 58.904 52.381 0.00 0.00 0.00 4.70
949 962 1.590259 GAGAGGCGAACGGAGCATC 60.590 63.158 5.74 5.74 44.64 3.91
954 967 1.961394 AGGCGAACGGAGCATCTATAA 59.039 47.619 0.00 0.00 36.08 0.98
963 976 2.171840 GAGCATCTATAAGCGGAGGGA 58.828 52.381 0.00 0.00 35.48 4.20
964 977 2.563179 GAGCATCTATAAGCGGAGGGAA 59.437 50.000 0.00 0.00 35.48 3.97
965 978 2.972713 AGCATCTATAAGCGGAGGGAAA 59.027 45.455 0.00 0.00 35.48 3.13
966 979 3.007398 AGCATCTATAAGCGGAGGGAAAG 59.993 47.826 0.00 0.00 35.48 2.62
967 980 3.006967 GCATCTATAAGCGGAGGGAAAGA 59.993 47.826 0.00 0.00 0.00 2.52
968 981 4.815269 CATCTATAAGCGGAGGGAAAGAG 58.185 47.826 0.00 0.00 0.00 2.85
969 982 4.180377 TCTATAAGCGGAGGGAAAGAGA 57.820 45.455 0.00 0.00 0.00 3.10
970 983 4.145807 TCTATAAGCGGAGGGAAAGAGAG 58.854 47.826 0.00 0.00 0.00 3.20
972 985 1.268283 AAGCGGAGGGAAAGAGAGGG 61.268 60.000 0.00 0.00 0.00 4.30
1110 1133 3.958147 AATCCGTGCTGTCTGGGCG 62.958 63.158 0.00 0.00 0.00 6.13
1139 1162 1.372087 CTCTCCGTGATTTGGGCTGC 61.372 60.000 0.00 0.00 0.00 5.25
1165 1188 0.887933 ATTTGGTTAGGGTGCGCTTG 59.112 50.000 9.73 0.00 0.00 4.01
1184 1207 4.839706 GCGGCCATGGATTGGGGT 62.840 66.667 18.40 0.00 46.55 4.95
1198 1221 4.450757 GGATTGGGGTTTTGTTCGATTTTG 59.549 41.667 0.00 0.00 0.00 2.44
1215 1238 1.697772 TTGTGGTGTTGTGTCGCGTC 61.698 55.000 5.77 0.00 0.00 5.19
1245 1268 3.256558 GCCAAAACCAGCTCATGATTTC 58.743 45.455 0.00 0.00 0.00 2.17
1266 1289 2.797156 CGTGCCCGATTTCTGATTCTAG 59.203 50.000 0.00 0.00 35.63 2.43
1308 1331 2.861147 ACCAAAGCAGGGTTCTACTC 57.139 50.000 0.00 0.00 34.10 2.59
1332 1355 1.801242 TGTTGAGTCCAGTTGGAGGA 58.199 50.000 0.00 0.00 46.49 3.71
1333 1356 1.694150 TGTTGAGTCCAGTTGGAGGAG 59.306 52.381 0.00 0.00 46.49 3.69
1334 1357 1.971357 GTTGAGTCCAGTTGGAGGAGA 59.029 52.381 0.00 0.00 46.49 3.71
1335 1358 1.633774 TGAGTCCAGTTGGAGGAGAC 58.366 55.000 0.00 0.00 46.49 3.36
1336 1359 1.148027 TGAGTCCAGTTGGAGGAGACT 59.852 52.381 0.00 0.00 46.49 3.24
1337 1360 2.252714 GAGTCCAGTTGGAGGAGACTT 58.747 52.381 0.00 0.00 46.49 3.01
1338 1361 2.635427 GAGTCCAGTTGGAGGAGACTTT 59.365 50.000 0.00 0.00 46.49 2.66
1339 1362 2.370189 AGTCCAGTTGGAGGAGACTTTG 59.630 50.000 0.00 0.00 46.49 2.77
1340 1363 2.104963 GTCCAGTTGGAGGAGACTTTGT 59.895 50.000 0.00 0.00 46.49 2.83
1341 1364 2.368875 TCCAGTTGGAGGAGACTTTGTC 59.631 50.000 0.00 0.00 44.43 3.18
1342 1365 2.551071 CCAGTTGGAGGAGACTTTGTCC 60.551 54.545 0.00 0.00 44.43 4.02
1343 1366 1.344763 AGTTGGAGGAGACTTTGTCCG 59.655 52.381 0.00 0.00 44.43 4.79
1344 1367 1.070289 GTTGGAGGAGACTTTGTCCGT 59.930 52.381 0.00 0.00 44.43 4.69
1345 1368 0.966920 TGGAGGAGACTTTGTCCGTC 59.033 55.000 0.00 0.00 44.43 4.79
1346 1369 1.258676 GGAGGAGACTTTGTCCGTCT 58.741 55.000 0.00 0.00 44.43 4.18
1347 1370 1.619332 GGAGGAGACTTTGTCCGTCTT 59.381 52.381 0.00 0.00 44.43 3.01
1348 1371 2.037381 GGAGGAGACTTTGTCCGTCTTT 59.963 50.000 0.00 0.00 44.43 2.52
1349 1372 3.494573 GGAGGAGACTTTGTCCGTCTTTT 60.495 47.826 0.00 0.00 44.43 2.27
1350 1373 4.127907 GAGGAGACTTTGTCCGTCTTTTT 58.872 43.478 0.00 0.00 44.43 1.94
1439 1462 2.225017 ACCTCCCTGTTGTATTTGTGGG 60.225 50.000 0.00 0.00 36.14 4.61
1440 1463 2.446435 CTCCCTGTTGTATTTGTGGGG 58.554 52.381 0.00 0.00 35.56 4.96
1441 1464 1.076350 TCCCTGTTGTATTTGTGGGGG 59.924 52.381 0.00 0.00 35.56 5.40
1527 1550 5.358298 ACCTTCGCTAAAACTTTGATGAC 57.642 39.130 0.00 0.00 0.00 3.06
1651 1674 1.074405 TGTTGCTGCTCCTCTTTCCAT 59.926 47.619 0.00 0.00 0.00 3.41
1755 1778 1.007238 CCTCCTCCCTCCTCTACAACA 59.993 57.143 0.00 0.00 0.00 3.33
2018 2042 1.758592 CCACGAAAGGACCAAGGGA 59.241 57.895 0.00 0.00 0.00 4.20
2128 2152 4.200283 GGAGCGAGCTCGGACCAG 62.200 72.222 35.10 8.98 43.59 4.00
2209 2233 6.347402 GCTAGACGAAAACATGTTTTAGAGCA 60.347 38.462 35.72 23.00 42.26 4.26
2237 2261 2.395619 CCGGGTACTCCTTATCCAACT 58.604 52.381 0.00 0.00 28.52 3.16
2601 2626 4.320714 GCACAGATCTCAAAGCAACATTGA 60.321 41.667 0.00 0.00 35.60 2.57
2610 2635 6.542005 TCTCAAAGCAACATTGAAGTGTTAGA 59.458 34.615 0.00 0.00 40.17 2.10
3229 3309 5.130975 GGCAAATCCTCAAATTCCCCTATTT 59.869 40.000 0.00 0.00 0.00 1.40
3230 3310 6.051074 GCAAATCCTCAAATTCCCCTATTTG 58.949 40.000 0.00 0.00 43.58 2.32
3231 3311 6.352137 GCAAATCCTCAAATTCCCCTATTTGT 60.352 38.462 8.44 0.00 43.03 2.83
3232 3312 6.796785 AATCCTCAAATTCCCCTATTTGTG 57.203 37.500 8.44 6.58 43.03 3.33
3245 3325 4.526970 CCTATTTGTGGCATACTGTTCCT 58.473 43.478 0.00 0.00 0.00 3.36
3282 3362 1.794701 GCGATTCGATTCTGCATGCTA 59.205 47.619 20.33 4.02 0.00 3.49
3338 3418 6.954487 TTTAGCTACGAGATGGTGAATCTA 57.046 37.500 0.00 0.00 46.12 1.98
3368 3448 3.114616 CTGCTGGCCTTGTCGTCG 61.115 66.667 3.32 0.00 0.00 5.12
3396 3476 0.388294 GTCTGCCTACGTATGTCCCC 59.612 60.000 0.00 0.00 0.00 4.81
3426 3506 2.711711 GCTATGGCCTGGTCACATG 58.288 57.895 1.52 0.00 0.00 3.21
3459 3539 9.211485 GCTCGCTGGTTACCTTAATAATTAATA 57.789 33.333 2.07 0.00 0.00 0.98
3494 3574 1.067582 CTCACCGGAATCGCCTACC 59.932 63.158 9.46 0.00 34.56 3.18
3531 3611 5.916883 CACGATTTCAGCACAAAAAGATTCT 59.083 36.000 0.00 0.00 0.00 2.40
3558 3638 1.950909 TGTTGCTTGGGTTTCCTAACG 59.049 47.619 0.00 0.00 35.00 3.18
3650 3730 9.579768 CTCGGTCCTTATGAATATAGATTTCTG 57.420 37.037 0.00 0.00 0.00 3.02
3653 3733 8.103305 GGTCCTTATGAATATAGATTTCTGCCA 58.897 37.037 0.00 0.00 0.00 4.92
3748 3828 7.523415 ACCTCTTACCATTTCCTGTAAAGAAA 58.477 34.615 0.00 0.00 37.61 2.52
3799 3879 6.545666 TGTTTTTCTCAAGCCAAACTATCTGA 59.454 34.615 0.00 0.00 31.59 3.27
3868 3950 7.364200 CGTGGACTTGTTTGGTTGAAATATTA 58.636 34.615 0.00 0.00 0.00 0.98
3879 3961 6.480763 TGGTTGAAATATTAAGGAGAGTGCA 58.519 36.000 0.00 0.00 0.00 4.57
3931 4013 5.811588 TGCGCATTTTTAATACGATGCTTA 58.188 33.333 5.66 0.00 41.96 3.09
3956 4038 2.229792 GTGGCTGTCAACTCCAATCAA 58.770 47.619 0.00 0.00 0.00 2.57
4028 4110 8.062065 AGAACTTTAATTTGTGGTTGTCTTGA 57.938 30.769 0.00 0.00 0.00 3.02
4143 4225 3.694566 GTCCTACAACAAATGCTTAGGGG 59.305 47.826 0.00 0.00 31.61 4.79
4148 4230 3.763897 ACAACAAATGCTTAGGGGTCATC 59.236 43.478 0.00 0.00 0.00 2.92
4160 4242 0.727398 GGGTCATCGCTTTAGCACAC 59.273 55.000 2.29 0.00 42.21 3.82
4194 4276 3.953542 ACTATTCATGTCCTTTCCCCC 57.046 47.619 0.00 0.00 0.00 5.40
4210 4292 6.465751 CCTTTCCCCCTTTTTAGCATCTTTTT 60.466 38.462 0.00 0.00 0.00 1.94
4270 4352 1.136252 CATGAAGTCGTCACCTTTGCG 60.136 52.381 0.00 0.00 39.72 4.85
4310 4392 1.544825 CCTTCAAGCGTCAGGGGAGA 61.545 60.000 0.00 0.00 0.00 3.71
4430 4512 3.251004 GGTGTCTTTCAGTCCACATCAAC 59.749 47.826 0.00 0.00 0.00 3.18
4572 4656 1.003464 ACACATACATGGTGCTCTGCA 59.997 47.619 0.00 0.00 39.87 4.41
4781 4874 8.565896 TCACATTAACATCATTACTTGCTTCT 57.434 30.769 0.00 0.00 0.00 2.85
4782 4875 9.013229 TCACATTAACATCATTACTTGCTTCTT 57.987 29.630 0.00 0.00 0.00 2.52
4783 4876 9.282247 CACATTAACATCATTACTTGCTTCTTC 57.718 33.333 0.00 0.00 0.00 2.87
4784 4877 9.236006 ACATTAACATCATTACTTGCTTCTTCT 57.764 29.630 0.00 0.00 0.00 2.85
4865 4967 5.858581 GAAGTTGTGCTTGGTCAAATATGAC 59.141 40.000 0.36 0.36 45.16 3.06
5341 5443 3.549299 CAAGCCTGCTCTTGTTACTTG 57.451 47.619 0.00 0.00 38.81 3.16
5361 5463 7.054491 ACTTGTCCAGATGTTGCTTTAAATT 57.946 32.000 0.00 0.00 0.00 1.82
5409 5511 5.645497 AGTGCTCGAGCTTTCTTGAAATTAT 59.355 36.000 35.27 6.76 42.66 1.28
5431 5533 6.600882 ATTCCAGCAATCTGAAAATTGAGT 57.399 33.333 0.98 0.00 42.95 3.41
5453 5555 5.124457 AGTGCTAAACTCCATGTTATTGCTG 59.876 40.000 0.00 0.00 38.03 4.41
5454 5556 4.398988 TGCTAAACTCCATGTTATTGCTGG 59.601 41.667 0.00 0.00 38.03 4.85
5473 5575 4.033358 GCTGGTCAGATATGTCTTGTTTCG 59.967 45.833 1.65 0.00 30.42 3.46
5603 5705 4.330620 CCTTGCATTTGCCATTAACATGAC 59.669 41.667 0.00 0.00 41.18 3.06
5609 5711 6.566141 CATTTGCCATTAACATGACTCATCA 58.434 36.000 0.00 0.00 39.83 3.07
5615 5717 7.338957 TGCCATTAACATGACTCATCACATAAA 59.661 33.333 0.00 0.00 37.79 1.40
5700 5802 0.449388 GAGCAGCTCCAATTTCACCG 59.551 55.000 11.84 0.00 0.00 4.94
5705 5807 3.308530 CAGCTCCAATTTCACCGAAAAC 58.691 45.455 0.00 0.00 35.11 2.43
5711 5813 3.181480 CCAATTTCACCGAAAACACCTGT 60.181 43.478 0.00 0.00 35.11 4.00
5958 6060 4.204978 GTGTTTCTTTCAAGCATGTGTTCG 59.795 41.667 0.00 0.00 0.00 3.95
6018 6120 1.266175 CACTCTTCTGCAGGCAAAGTG 59.734 52.381 15.13 17.20 0.00 3.16
6063 6165 6.436738 TGTACTTGTTTCACCCCTATGTAA 57.563 37.500 0.00 0.00 0.00 2.41
6067 6169 4.650972 TGTTTCACCCCTATGTAAAGCT 57.349 40.909 0.00 0.00 0.00 3.74
6073 6175 1.843851 CCCCTATGTAAAGCTCCCACA 59.156 52.381 0.00 0.00 0.00 4.17
6088 6190 2.276732 CCACATGGACTGAGTGGTTT 57.723 50.000 0.00 0.00 45.95 3.27
6128 6230 3.244353 GCAGCATATGACATACTGGGTCT 60.244 47.826 6.97 0.00 36.26 3.85
6327 6430 7.605691 TGACATTTCCTTTGCTTTTCTTGAAAA 59.394 29.630 8.07 8.07 0.00 2.29
6328 6431 7.751732 ACATTTCCTTTGCTTTTCTTGAAAAC 58.248 30.769 4.61 3.86 0.00 2.43
6391 6508 4.285517 ACCTGAATCAGATATAGTGCAGGG 59.714 45.833 12.53 0.00 44.44 4.45
6418 6535 2.762535 AGTGTAAGCACCGCATACTT 57.237 45.000 3.41 0.00 46.35 2.24
6424 6541 1.739067 AGCACCGCATACTTTTCTCC 58.261 50.000 0.00 0.00 0.00 3.71
6520 6637 1.222766 GATCAGCGGCAGAGCATGAG 61.223 60.000 5.73 0.00 40.15 2.90
6537 6654 2.554272 GCGTGTGGCGGTTTGTAG 59.446 61.111 0.00 0.00 41.69 2.74
6540 6657 1.289109 CGTGTGGCGGTTTGTAGAGG 61.289 60.000 0.00 0.00 36.85 3.69
6592 6709 6.839124 TTGCATGTTTCTTCATTCCAGTAT 57.161 33.333 0.00 0.00 0.00 2.12
6604 6721 5.150715 TCATTCCAGTATCTCTAGTGCCAT 58.849 41.667 0.00 0.00 0.00 4.40
6676 6793 4.993584 CAGGAGATATGATTTGACGGAAGG 59.006 45.833 0.00 0.00 0.00 3.46
6717 6834 5.598830 TGTAGAACCCTTATTTTTGTTGGCA 59.401 36.000 0.00 0.00 0.00 4.92
6736 6853 2.808543 GCAAGAATTCTCAGTTCCACGT 59.191 45.455 8.78 0.00 0.00 4.49
6787 6904 6.712276 TCGATAGGAGATATTGTGCTCTAGA 58.288 40.000 0.00 0.00 0.00 2.43
6824 6941 9.939802 AAATATATTTACATACTCCTTCCGTCC 57.060 33.333 8.99 0.00 0.00 4.79
6825 6942 4.684484 ATTTACATACTCCTTCCGTCCC 57.316 45.455 0.00 0.00 0.00 4.46
6826 6943 2.832643 TACATACTCCTTCCGTCCCA 57.167 50.000 0.00 0.00 0.00 4.37
6827 6944 2.176247 ACATACTCCTTCCGTCCCAT 57.824 50.000 0.00 0.00 0.00 4.00
6828 6945 3.323774 ACATACTCCTTCCGTCCCATA 57.676 47.619 0.00 0.00 0.00 2.74
6829 6946 3.649843 ACATACTCCTTCCGTCCCATAA 58.350 45.455 0.00 0.00 0.00 1.90
6830 6947 4.232091 ACATACTCCTTCCGTCCCATAAT 58.768 43.478 0.00 0.00 0.00 1.28
6831 6948 4.040461 ACATACTCCTTCCGTCCCATAATG 59.960 45.833 0.00 0.00 0.00 1.90
6832 6949 2.478292 ACTCCTTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
6833 6950 3.649843 ACTCCTTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
6834 6951 4.035112 ACTCCTTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
6835 6952 4.101119 ACTCCTTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
6836 6953 4.291792 TCCTTCCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
6837 6954 4.100498 TCCTTCCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
6839 6956 2.132762 CCGTCCCATAATGTAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
6840 6957 2.482316 CCGTCCCATAATGTAAGACGCA 60.482 50.000 5.39 0.00 46.66 5.24
6841 6958 2.794910 CGTCCCATAATGTAAGACGCAG 59.205 50.000 0.00 0.00 43.07 5.18
6866 6983 9.974980 AGTACCATTTAAATGTTTTAGTTGTGG 57.025 29.630 23.24 10.19 34.60 4.17
6871 6988 8.760569 CATTTAAATGTTTTAGTTGTGGTGACC 58.239 33.333 18.32 0.00 0.00 4.02
6989 7106 3.490890 GCCTCTACAAGCCAAGCG 58.509 61.111 0.00 0.00 0.00 4.68
7026 7143 3.747579 CAGCCCCCTGAGCCCATT 61.748 66.667 0.00 0.00 41.77 3.16
7138 7255 1.071699 TGAATAAGGGCGGCATAGGTC 59.928 52.381 12.47 2.23 0.00 3.85
7161 7278 6.368791 GTCTTTGCCATTTAGGGTGAAATTTC 59.631 38.462 11.41 11.41 38.09 2.17
7163 7280 6.432403 TTGCCATTTAGGGTGAAATTTCTT 57.568 33.333 18.64 5.29 38.09 2.52
7198 7315 6.018994 GTGGATCGGTGAGATATTTGTGTTAC 60.019 42.308 0.00 0.00 40.26 2.50
7240 7357 5.755849 AGAAATGATAGGTTGGGTAGGTTG 58.244 41.667 0.00 0.00 0.00 3.77
7242 7359 1.562475 TGATAGGTTGGGTAGGTTGGC 59.438 52.381 0.00 0.00 0.00 4.52
7307 7424 7.165485 TGTTATACTCCACTTGCTACATTGTT 58.835 34.615 0.00 0.00 0.00 2.83
7337 7454 7.423844 AAGCAAAAGGGAAATAATAGGGAAG 57.576 36.000 0.00 0.00 0.00 3.46
7344 7461 5.681479 AGGGAAATAATAGGGAAGGGTGAAT 59.319 40.000 0.00 0.00 0.00 2.57
7401 7524 7.881643 ATTATCTCAGAATGTAACATCGAGC 57.118 36.000 0.00 0.00 37.40 5.03
7445 7568 1.705186 ACCCGGCCTCTGCATAAATAT 59.295 47.619 0.00 0.00 40.13 1.28
7446 7569 2.108250 ACCCGGCCTCTGCATAAATATT 59.892 45.455 0.00 0.00 40.13 1.28
7447 7570 3.157087 CCCGGCCTCTGCATAAATATTT 58.843 45.455 5.89 5.89 40.13 1.40
7474 7597 6.072508 TGCATACAGTCAAATCCAAAAGTCTC 60.073 38.462 0.00 0.00 0.00 3.36
7482 7606 8.260114 AGTCAAATCCAAAAGTCTCACAAAAAT 58.740 29.630 0.00 0.00 0.00 1.82
7561 7687 0.893727 GTTGAAGGTGGCGGTGGATT 60.894 55.000 0.00 0.00 0.00 3.01
7583 7709 4.885426 CGGAGGTTATGCTGGCAT 57.115 55.556 12.76 12.76 40.19 4.40
7670 7796 0.249398 GGTGCTCCGGTCATTGTAGT 59.751 55.000 0.00 0.00 0.00 2.73
7688 7814 7.870509 TTGTAGTATAGACCACGTATGAAGT 57.129 36.000 0.00 0.00 0.00 3.01
7725 7851 5.707298 CAGAAAATAACCTGCAGAGGAGAAA 59.293 40.000 17.39 0.00 42.93 2.52
7726 7852 6.376581 CAGAAAATAACCTGCAGAGGAGAAAT 59.623 38.462 17.39 0.00 42.93 2.17
7784 8148 2.083774 CAGAGCGACCAAATTAAGGCA 58.916 47.619 0.00 0.00 0.00 4.75
7794 8158 4.516698 ACCAAATTAAGGCATATGCTCTCG 59.483 41.667 26.12 7.82 41.70 4.04
7821 8185 9.059260 CCCTTATAAGCGCTTTAAACCTATTTA 57.941 33.333 30.13 5.53 0.00 1.40
7838 8202 6.070078 ACCTATTTAGAATACCGTCCAACCAA 60.070 38.462 0.00 0.00 0.00 3.67
7961 8325 3.061831 GCTTGATTGTCTCGTCATGAGTG 59.938 47.826 0.00 0.00 45.46 3.51
7963 8327 2.029110 TGATTGTCTCGTCATGAGTGCA 60.029 45.455 0.00 0.00 45.46 4.57
7989 8353 3.046374 ACAACACTTCTTACTCCCTGGT 58.954 45.455 0.00 0.00 0.00 4.00
8019 8383 1.531149 CGTGCGAGGTTGTCTTTGATT 59.469 47.619 0.00 0.00 0.00 2.57
8052 8763 6.830912 TCCCTTATGAAGATACCACATGAAG 58.169 40.000 0.00 0.00 0.00 3.02
8068 8779 9.349713 ACCACATGAAGATTTTCACTTTTAGTA 57.650 29.630 0.00 0.00 45.54 1.82
8108 8887 7.973388 CCAAATTTTCTTGTTGTTACTCACTGA 59.027 33.333 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203972 CTTGTGGTCATTGGCGGCAG 62.204 60.000 12.87 1.01 0.00 4.85
20 21 0.680921 ATCCTTGTGGTCATTGGCGG 60.681 55.000 0.00 0.00 34.23 6.13
45 46 3.281727 TCAATATCCCTTGTGCCAGAC 57.718 47.619 0.00 0.00 0.00 3.51
55 56 3.069586 TCGTCGCAGATTTCAATATCCCT 59.930 43.478 0.00 0.00 40.67 4.20
66 67 1.328069 CTCTACTCGTCGTCGCAGATT 59.672 52.381 0.00 0.00 40.67 2.40
73 74 5.220567 CCCTACTTAAACTCTACTCGTCGTC 60.221 48.000 0.00 0.00 0.00 4.20
104 105 4.610945 AGCAAACGAGTTCCATTGAAAAG 58.389 39.130 0.00 0.00 30.79 2.27
191 192 3.763897 GCTACAACCACAATCCTCCAATT 59.236 43.478 0.00 0.00 0.00 2.32
195 196 2.084546 GTGCTACAACCACAATCCTCC 58.915 52.381 0.00 0.00 33.50 4.30
222 223 6.441222 TGGACTACTCAACCCTATACTCATT 58.559 40.000 0.00 0.00 0.00 2.57
267 268 3.181516 CGAGAGCCAAATAGTTGCACTTC 60.182 47.826 0.00 0.00 33.01 3.01
268 269 2.744202 CGAGAGCCAAATAGTTGCACTT 59.256 45.455 0.00 0.00 33.01 3.16
269 270 2.289694 ACGAGAGCCAAATAGTTGCACT 60.290 45.455 0.00 0.00 33.01 4.40
270 271 2.076863 ACGAGAGCCAAATAGTTGCAC 58.923 47.619 0.00 0.00 33.01 4.57
271 272 2.076100 CACGAGAGCCAAATAGTTGCA 58.924 47.619 0.00 0.00 33.01 4.08
272 273 1.398390 CCACGAGAGCCAAATAGTTGC 59.602 52.381 0.00 0.00 33.01 4.17
273 274 2.416547 CACCACGAGAGCCAAATAGTTG 59.583 50.000 0.00 0.00 34.25 3.16
274 275 2.301870 TCACCACGAGAGCCAAATAGTT 59.698 45.455 0.00 0.00 0.00 2.24
275 276 1.899814 TCACCACGAGAGCCAAATAGT 59.100 47.619 0.00 0.00 0.00 2.12
287 288 7.708051 TCTTTTGAATTTATTGTTCACCACGA 58.292 30.769 0.00 0.00 35.47 4.35
349 350 2.025981 ACACCTAAGCATCTTCCATGCA 60.026 45.455 9.16 0.00 46.77 3.96
350 351 2.357009 CACACCTAAGCATCTTCCATGC 59.643 50.000 0.00 0.00 44.85 4.06
351 352 3.614092 ACACACCTAAGCATCTTCCATG 58.386 45.455 0.00 0.00 0.00 3.66
370 371 4.138290 TGAAATTTGAAGCGGACCTTACA 58.862 39.130 0.00 0.00 32.78 2.41
373 374 2.029918 GCTGAAATTTGAAGCGGACCTT 60.030 45.455 0.00 0.00 36.19 3.50
391 392 1.926561 TCGGATGTCGAAATGAGCTG 58.073 50.000 0.00 0.00 45.86 4.24
426 427 6.747414 ACCCTAATTTTGCTTCCTCTTTTT 57.253 33.333 0.00 0.00 0.00 1.94
427 428 6.747414 AACCCTAATTTTGCTTCCTCTTTT 57.253 33.333 0.00 0.00 0.00 2.27
428 429 6.099701 ACAAACCCTAATTTTGCTTCCTCTTT 59.900 34.615 0.00 0.00 37.45 2.52
429 430 5.602561 ACAAACCCTAATTTTGCTTCCTCTT 59.397 36.000 0.00 0.00 37.45 2.85
430 431 5.011023 CACAAACCCTAATTTTGCTTCCTCT 59.989 40.000 0.00 0.00 37.45 3.69
431 432 5.010617 TCACAAACCCTAATTTTGCTTCCTC 59.989 40.000 0.00 0.00 37.45 3.71
432 433 4.898861 TCACAAACCCTAATTTTGCTTCCT 59.101 37.500 0.00 0.00 37.45 3.36
433 434 5.208463 TCACAAACCCTAATTTTGCTTCC 57.792 39.130 0.00 0.00 37.45 3.46
434 435 7.728847 ATTTCACAAACCCTAATTTTGCTTC 57.271 32.000 0.00 0.00 37.45 3.86
458 459 9.074576 TCAGAACAGTAGATGAACAGTAAACTA 57.925 33.333 0.00 0.00 0.00 2.24
499 500 5.450137 GGACATACGAGTAGCTCTTAGCAAA 60.450 44.000 0.00 0.00 45.56 3.68
531 532 5.803967 GCATGAGGTCAGCTTTAAATTTCAG 59.196 40.000 0.00 0.00 0.00 3.02
540 541 0.111061 TGGTGCATGAGGTCAGCTTT 59.889 50.000 0.00 0.00 0.00 3.51
541 542 0.111061 TTGGTGCATGAGGTCAGCTT 59.889 50.000 0.00 0.00 0.00 3.74
545 546 2.583024 TGATTTGGTGCATGAGGTCA 57.417 45.000 0.00 0.00 0.00 4.02
546 547 3.285484 AGATGATTTGGTGCATGAGGTC 58.715 45.455 0.00 0.00 0.00 3.85
553 554 4.598022 TGTATGGAAGATGATTTGGTGCA 58.402 39.130 0.00 0.00 0.00 4.57
610 611 9.639601 CGGCTAAGAGGAAATTAAAAGAAATTT 57.360 29.630 0.00 0.00 40.79 1.82
612 613 7.396339 ACCGGCTAAGAGGAAATTAAAAGAAAT 59.604 33.333 0.00 0.00 0.00 2.17
640 641 3.020274 TCAGACTCATCTACTGGTCTGC 58.980 50.000 14.63 0.00 44.43 4.26
641 642 4.704540 AGTTCAGACTCATCTACTGGTCTG 59.295 45.833 13.63 13.63 45.21 3.51
642 643 4.929479 AGTTCAGACTCATCTACTGGTCT 58.071 43.478 0.00 0.00 36.45 3.85
658 659 4.212847 CCCGATATGCATTTCTGAGTTCAG 59.787 45.833 3.54 2.69 45.08 3.02
659 660 4.129380 CCCGATATGCATTTCTGAGTTCA 58.871 43.478 3.54 0.00 0.00 3.18
660 661 4.130118 ACCCGATATGCATTTCTGAGTTC 58.870 43.478 3.54 0.00 0.00 3.01
661 662 4.156455 ACCCGATATGCATTTCTGAGTT 57.844 40.909 3.54 0.00 0.00 3.01
662 663 3.845781 ACCCGATATGCATTTCTGAGT 57.154 42.857 3.54 1.26 0.00 3.41
663 664 5.300752 ACTAACCCGATATGCATTTCTGAG 58.699 41.667 3.54 0.61 0.00 3.35
664 665 5.290493 ACTAACCCGATATGCATTTCTGA 57.710 39.130 3.54 0.00 0.00 3.27
665 666 6.929049 TCTAACTAACCCGATATGCATTTCTG 59.071 38.462 3.54 2.76 0.00 3.02
666 667 6.929606 GTCTAACTAACCCGATATGCATTTCT 59.070 38.462 3.54 0.00 0.00 2.52
667 668 6.929606 AGTCTAACTAACCCGATATGCATTTC 59.070 38.462 3.54 5.68 0.00 2.17
668 669 6.827727 AGTCTAACTAACCCGATATGCATTT 58.172 36.000 3.54 0.00 0.00 2.32
669 670 6.420913 AGTCTAACTAACCCGATATGCATT 57.579 37.500 3.54 0.00 0.00 3.56
670 671 5.047235 GGAGTCTAACTAACCCGATATGCAT 60.047 44.000 3.79 3.79 0.00 3.96
671 672 4.280174 GGAGTCTAACTAACCCGATATGCA 59.720 45.833 0.00 0.00 0.00 3.96
672 673 4.523558 AGGAGTCTAACTAACCCGATATGC 59.476 45.833 0.00 0.00 0.00 3.14
673 674 6.651975 AAGGAGTCTAACTAACCCGATATG 57.348 41.667 0.00 0.00 0.00 1.78
674 675 8.637099 GTTAAAGGAGTCTAACTAACCCGATAT 58.363 37.037 0.00 0.00 0.00 1.63
675 676 7.068716 GGTTAAAGGAGTCTAACTAACCCGATA 59.931 40.741 10.44 0.00 29.72 2.92
676 677 6.127225 GGTTAAAGGAGTCTAACTAACCCGAT 60.127 42.308 10.44 0.00 29.72 4.18
677 678 5.185828 GGTTAAAGGAGTCTAACTAACCCGA 59.814 44.000 10.44 0.00 29.72 5.14
678 679 5.186603 AGGTTAAAGGAGTCTAACTAACCCG 59.813 44.000 14.79 0.00 34.12 5.28
679 680 6.212187 TGAGGTTAAAGGAGTCTAACTAACCC 59.788 42.308 14.79 10.11 34.12 4.11
680 681 7.237209 TGAGGTTAAAGGAGTCTAACTAACC 57.763 40.000 12.33 12.33 33.92 2.85
682 683 8.693625 GCTATGAGGTTAAAGGAGTCTAACTAA 58.306 37.037 0.00 0.00 0.00 2.24
683 684 7.837689 TGCTATGAGGTTAAAGGAGTCTAACTA 59.162 37.037 0.00 0.00 0.00 2.24
684 685 6.668283 TGCTATGAGGTTAAAGGAGTCTAACT 59.332 38.462 0.00 0.00 0.00 2.24
685 686 6.757478 GTGCTATGAGGTTAAAGGAGTCTAAC 59.243 42.308 0.00 0.00 0.00 2.34
686 687 6.127140 GGTGCTATGAGGTTAAAGGAGTCTAA 60.127 42.308 0.00 0.00 0.00 2.10
687 688 5.363005 GGTGCTATGAGGTTAAAGGAGTCTA 59.637 44.000 0.00 0.00 0.00 2.59
688 689 4.162509 GGTGCTATGAGGTTAAAGGAGTCT 59.837 45.833 0.00 0.00 0.00 3.24
689 690 4.443621 GGTGCTATGAGGTTAAAGGAGTC 58.556 47.826 0.00 0.00 0.00 3.36
690 691 3.118738 CGGTGCTATGAGGTTAAAGGAGT 60.119 47.826 0.00 0.00 0.00 3.85
691 692 3.458189 CGGTGCTATGAGGTTAAAGGAG 58.542 50.000 0.00 0.00 0.00 3.69
692 693 2.419574 GCGGTGCTATGAGGTTAAAGGA 60.420 50.000 0.00 0.00 0.00 3.36
693 694 1.940613 GCGGTGCTATGAGGTTAAAGG 59.059 52.381 0.00 0.00 0.00 3.11
694 695 2.609459 CAGCGGTGCTATGAGGTTAAAG 59.391 50.000 0.00 0.00 36.40 1.85
695 696 2.627945 CAGCGGTGCTATGAGGTTAAA 58.372 47.619 0.00 0.00 36.40 1.52
704 705 1.449601 CGGAAACCAGCGGTGCTAT 60.450 57.895 9.63 0.00 36.40 2.97
710 711 0.517316 CTTCTTTCGGAAACCAGCGG 59.483 55.000 0.00 0.00 33.07 5.52
720 721 6.128634 GGTTACACATTACTCACTTCTTTCGG 60.129 42.308 0.00 0.00 0.00 4.30
722 723 7.095187 CCAGGTTACACATTACTCACTTCTTTC 60.095 40.741 0.00 0.00 0.00 2.62
782 791 1.711206 GTTCCTATATTCGCTCCGCC 58.289 55.000 0.00 0.00 0.00 6.13
831 840 2.158957 TCTCACTTTCACTCTTGGCGTT 60.159 45.455 0.00 0.00 0.00 4.84
839 848 6.073819 GCTCTCTCTTTTTCTCACTTTCACTC 60.074 42.308 0.00 0.00 0.00 3.51
840 849 5.757808 GCTCTCTCTTTTTCTCACTTTCACT 59.242 40.000 0.00 0.00 0.00 3.41
841 850 5.332959 CGCTCTCTCTTTTTCTCACTTTCAC 60.333 44.000 0.00 0.00 0.00 3.18
857 869 2.049985 ACGCACACACGCTCTCTC 60.050 61.111 0.00 0.00 36.19 3.20
940 953 1.542030 CTCCGCTTATAGATGCTCCGT 59.458 52.381 0.00 0.00 0.00 4.69
949 962 3.257127 CCTCTCTTTCCCTCCGCTTATAG 59.743 52.174 0.00 0.00 0.00 1.31
954 967 1.687493 CCCTCTCTTTCCCTCCGCT 60.687 63.158 0.00 0.00 0.00 5.52
1110 1133 2.386661 TCACGGAGAGGAAAAGATGC 57.613 50.000 0.00 0.00 0.00 3.91
1139 1162 2.610232 GCACCCTAACCAAATGCAACAG 60.610 50.000 0.00 0.00 36.30 3.16
1184 1207 5.119279 CACAACACCACAAAATCGAACAAAA 59.881 36.000 0.00 0.00 0.00 2.44
1198 1221 2.624264 GACGCGACACAACACCAC 59.376 61.111 15.93 0.00 0.00 4.16
1245 1268 1.656652 AGAATCAGAAATCGGGCACG 58.343 50.000 0.00 0.00 42.74 5.34
1266 1289 1.336609 GGTTGTACTCCACAGTCCGAC 60.337 57.143 0.00 0.00 38.72 4.79
1308 1331 3.138304 TCCAACTGGACTCAACAATTCG 58.862 45.455 0.00 0.00 39.78 3.34
1351 1374 3.211045 CGGACAAAGTCTCCCTCAAAAA 58.789 45.455 0.00 0.00 32.47 1.94
1352 1375 2.171870 ACGGACAAAGTCTCCCTCAAAA 59.828 45.455 0.00 0.00 32.47 2.44
1353 1376 1.766496 ACGGACAAAGTCTCCCTCAAA 59.234 47.619 0.00 0.00 32.47 2.69
1354 1377 1.343465 GACGGACAAAGTCTCCCTCAA 59.657 52.381 0.00 0.00 35.84 3.02
1355 1378 0.966920 GACGGACAAAGTCTCCCTCA 59.033 55.000 0.00 0.00 35.84 3.86
1356 1379 1.258676 AGACGGACAAAGTCTCCCTC 58.741 55.000 0.00 0.00 44.87 4.30
1357 1380 3.459386 AGACGGACAAAGTCTCCCT 57.541 52.632 0.00 0.00 44.87 4.20
1401 1424 0.108662 GGTGCCTGCTTTATTGGTGC 60.109 55.000 0.00 0.00 0.00 5.01
1439 1462 1.367471 GCAAGCAAAGGTGTTCCCC 59.633 57.895 0.00 0.00 0.00 4.81
1440 1463 0.249447 GTGCAAGCAAAGGTGTTCCC 60.249 55.000 0.00 0.00 0.00 3.97
1441 1464 0.746659 AGTGCAAGCAAAGGTGTTCC 59.253 50.000 0.00 0.00 0.00 3.62
1442 1465 2.099756 AGAAGTGCAAGCAAAGGTGTTC 59.900 45.455 0.00 0.00 0.00 3.18
1443 1466 2.102578 AGAAGTGCAAGCAAAGGTGTT 58.897 42.857 0.00 0.00 0.00 3.32
1444 1467 1.767759 AGAAGTGCAAGCAAAGGTGT 58.232 45.000 0.00 0.00 0.00 4.16
1504 1527 6.228258 AGTCATCAAAGTTTTAGCGAAGGTA 58.772 36.000 0.00 0.00 40.68 3.08
1510 1533 3.914364 GGCAAGTCATCAAAGTTTTAGCG 59.086 43.478 0.00 0.00 0.00 4.26
1527 1550 2.558359 CAAACCAGGTAGAAAGGGCAAG 59.442 50.000 0.00 0.00 0.00 4.01
1651 1674 0.698238 AGTGGCTTGGCATTGGAGTA 59.302 50.000 0.00 0.00 0.00 2.59
1755 1778 4.961511 TGCGCCTCGAGCACGTTT 62.962 61.111 21.97 0.00 44.04 3.60
2128 2152 0.179000 ATGCATGGAGAAGGACGTCC 59.821 55.000 27.67 27.67 0.00 4.79
2179 2203 3.067106 ACATGTTTTCGTCTAGCACCTG 58.933 45.455 0.00 0.00 0.00 4.00
2180 2204 3.402628 ACATGTTTTCGTCTAGCACCT 57.597 42.857 0.00 0.00 0.00 4.00
2181 2205 4.483476 AAACATGTTTTCGTCTAGCACC 57.517 40.909 18.13 0.00 0.00 5.01
2182 2206 6.884187 TCTAAAACATGTTTTCGTCTAGCAC 58.116 36.000 33.71 0.00 41.39 4.40
2183 2207 6.347402 GCTCTAAAACATGTTTTCGTCTAGCA 60.347 38.462 33.71 16.69 41.39 3.49
2184 2208 6.016111 GCTCTAAAACATGTTTTCGTCTAGC 58.984 40.000 33.71 28.00 41.39 3.42
2185 2209 7.117241 TGCTCTAAAACATGTTTTCGTCTAG 57.883 36.000 33.71 25.37 41.39 2.43
2186 2210 7.667043 ATGCTCTAAAACATGTTTTCGTCTA 57.333 32.000 33.71 20.88 41.39 2.59
2187 2211 6.560253 ATGCTCTAAAACATGTTTTCGTCT 57.440 33.333 33.71 16.89 41.39 4.18
2209 2233 0.105142 AGGAGTACCCGGGTGCATAT 60.105 55.000 38.49 22.01 40.87 1.78
2237 2261 4.371786 GAATCGTGATGCAGGAATGAGTA 58.628 43.478 0.00 0.00 32.06 2.59
2575 2600 4.582869 TGTTGCTTTGAGATCTGTGCTAT 58.417 39.130 0.00 0.00 0.00 2.97
2601 2626 3.118738 CGGGCCTCACTATTCTAACACTT 60.119 47.826 0.84 0.00 0.00 3.16
2610 2635 3.043999 GCACCCGGGCCTCACTATT 62.044 63.158 24.08 0.00 0.00 1.73
2914 2955 3.627577 CGGAAAATGGATGAGGAAACGAT 59.372 43.478 0.00 0.00 0.00 3.73
3229 3309 0.692476 AGCAGGAACAGTATGCCACA 59.308 50.000 2.49 0.00 42.53 4.17
3230 3310 1.470098 CAAGCAGGAACAGTATGCCAC 59.530 52.381 2.49 0.00 42.53 5.01
3231 3311 1.073763 ACAAGCAGGAACAGTATGCCA 59.926 47.619 2.49 0.00 42.53 4.92
3232 3312 1.826385 ACAAGCAGGAACAGTATGCC 58.174 50.000 2.49 0.00 42.53 4.40
3233 3313 3.667960 CGAAACAAGCAGGAACAGTATGC 60.668 47.826 0.00 0.00 42.53 3.14
3245 3325 2.844451 GCAGGTGGCGAAACAAGCA 61.844 57.895 0.00 0.00 36.08 3.91
3282 3362 2.148916 TCAGCAGACGACGAAATGTT 57.851 45.000 0.00 0.00 0.00 2.71
3368 3448 1.225963 GTAGGCAGACGACGACGAC 60.226 63.158 15.32 8.08 42.66 4.34
3426 3506 1.079127 TAACCAGCGAGCAAGGAGC 60.079 57.895 12.39 0.00 46.19 4.70
3459 3539 4.036027 CGGTGAGCTGAATTGCTTGAATAT 59.964 41.667 0.00 0.00 44.17 1.28
3558 3638 1.433534 CGCCAAGAAGAAGAGTGGAC 58.566 55.000 0.00 0.00 32.54 4.02
3650 3730 1.021390 AGCGCAACATACTCAGTGGC 61.021 55.000 11.47 0.00 32.52 5.01
3653 3733 1.432514 CACAGCGCAACATACTCAGT 58.567 50.000 11.47 0.00 0.00 3.41
3713 3793 1.278127 TGGTAAGAGGTTGCAGCTACC 59.722 52.381 17.53 17.53 35.85 3.18
3714 3794 2.762535 TGGTAAGAGGTTGCAGCTAC 57.237 50.000 0.00 0.00 0.00 3.58
3748 3828 5.011227 ACCAACAACCAAACAAAAGTACAGT 59.989 36.000 0.00 0.00 0.00 3.55
3799 3879 5.505181 AACTGTATGAAGATTCCACAGGT 57.495 39.130 19.98 14.76 40.61 4.00
3868 3950 4.381411 GACTTGTAAACTGCACTCTCCTT 58.619 43.478 0.00 0.00 0.00 3.36
3879 3961 3.192466 ACGTGAAAGCGACTTGTAAACT 58.808 40.909 0.00 0.00 35.59 2.66
3931 4013 1.672356 GAGTTGACAGCCACGGCAT 60.672 57.895 11.35 0.00 44.88 4.40
4143 4225 2.337583 TGAGTGTGCTAAAGCGATGAC 58.662 47.619 0.00 0.00 45.83 3.06
4148 4230 5.234972 TCATTATGATGAGTGTGCTAAAGCG 59.765 40.000 0.00 0.00 39.55 4.68
4190 4272 5.187772 AGCTAAAAAGATGCTAAAAAGGGGG 59.812 40.000 0.00 0.00 35.05 5.40
4259 4341 4.451096 TCTCTAAAATGACGCAAAGGTGAC 59.549 41.667 0.00 0.00 0.00 3.67
4295 4377 0.035458 AAGTTCTCCCCTGACGCTTG 59.965 55.000 0.00 0.00 0.00 4.01
4310 4392 2.638363 AGGCGAGGAAAAGGTAGAAGTT 59.362 45.455 0.00 0.00 0.00 2.66
4355 4437 5.221843 TGGTCAAGACAGGCATTAAAGTACT 60.222 40.000 2.29 0.00 0.00 2.73
4356 4438 5.001232 TGGTCAAGACAGGCATTAAAGTAC 58.999 41.667 2.29 0.00 0.00 2.73
4430 4512 4.819105 TCTGTGTCCATACTAAACCAGG 57.181 45.455 0.00 0.00 0.00 4.45
4471 4553 9.638300 GTAAATCTATTCAAATACAGCTTGACG 57.362 33.333 0.00 0.00 32.61 4.35
4572 4656 7.507277 TCCTGATAGCATCAAGATAAGTAGTGT 59.493 37.037 0.00 0.00 39.11 3.55
4781 4874 6.928492 GCCCAAAACTTAATGACAAATCAGAA 59.072 34.615 0.00 0.00 38.57 3.02
4782 4875 6.041409 TGCCCAAAACTTAATGACAAATCAGA 59.959 34.615 0.00 0.00 38.57 3.27
4783 4876 6.222389 TGCCCAAAACTTAATGACAAATCAG 58.778 36.000 0.00 0.00 38.57 2.90
4784 4877 6.166984 TGCCCAAAACTTAATGACAAATCA 57.833 33.333 0.00 0.00 39.83 2.57
4803 4896 0.394762 TGATGAACCATCAGCTGCCC 60.395 55.000 9.47 0.00 44.60 5.36
4865 4967 3.918294 TGGGACTAAATAACGGAAGGG 57.082 47.619 0.00 0.00 0.00 3.95
4879 4981 2.224621 CCACTGAAAGACACATGGGACT 60.225 50.000 0.00 0.00 37.43 3.85
4935 5037 0.028770 GCAGCGCGCACCATAAAATA 59.971 50.000 35.10 0.00 41.79 1.40
5341 5443 8.082242 ACTTACAATTTAAAGCAACATCTGGAC 58.918 33.333 0.00 0.00 0.00 4.02
5361 5463 7.706179 ACTTTAAACTAGCGTGTTGTACTTACA 59.294 33.333 0.00 0.00 0.00 2.41
5409 5511 5.775686 CACTCAATTTTCAGATTGCTGGAA 58.224 37.500 0.00 0.00 42.53 3.53
5431 5533 4.398988 CCAGCAATAACATGGAGTTTAGCA 59.601 41.667 0.00 0.00 41.64 3.49
5453 5555 5.292101 CCTTCGAAACAAGACATATCTGACC 59.708 44.000 0.00 0.00 34.48 4.02
5454 5556 6.100004 TCCTTCGAAACAAGACATATCTGAC 58.900 40.000 0.00 0.00 34.48 3.51
5473 5575 3.452627 TCAGGGCAGAAGAGTAATCCTTC 59.547 47.826 0.00 0.00 40.10 3.46
5643 5745 7.759489 TTGCACAATAGGATACAAGAAAAGT 57.241 32.000 0.00 0.00 41.41 2.66
5653 5755 8.839343 CAACTACATGATTTGCACAATAGGATA 58.161 33.333 0.00 0.00 0.00 2.59
5711 5813 3.609853 GCCAAGTCATCAACAGATGGTA 58.390 45.455 5.71 0.00 39.66 3.25
5992 6094 1.233285 CCTGCAGAAGAGTGTGTGGC 61.233 60.000 17.39 0.00 0.00 5.01
6018 6120 3.220940 AGACCTAATACACGCTCCCTAC 58.779 50.000 0.00 0.00 0.00 3.18
6067 6169 2.376063 CCACTCAGTCCATGTGGGA 58.624 57.895 0.00 0.00 45.29 4.37
6073 6175 7.182206 ACCTTACTATAAAACCACTCAGTCCAT 59.818 37.037 0.00 0.00 0.00 3.41
6102 6204 4.338964 CCCAGTATGTCATATGCTGCAAAA 59.661 41.667 6.36 0.00 31.66 2.44
6284 6387 7.761249 GGAAATGTCATGTGGAGGAAATTAAAG 59.239 37.037 0.00 0.00 0.00 1.85
6290 6393 4.387026 AGGAAATGTCATGTGGAGGAAA 57.613 40.909 0.00 0.00 0.00 3.13
6327 6430 7.510675 TTACTTCCTAAGGATTCAAGGATGT 57.489 36.000 14.65 14.65 45.02 3.06
6391 6508 2.157085 GCGGTGCTTACACTTCTACAAC 59.843 50.000 0.00 0.00 46.57 3.32
6441 6558 7.608376 AGACTTAATAGCTCAAAGGGAAAAGAC 59.392 37.037 0.00 0.00 0.00 3.01
6520 6637 1.897398 CTCTACAAACCGCCACACGC 61.897 60.000 0.00 0.00 41.76 5.34
6529 6646 2.161609 CCGTTCATTGCCTCTACAAACC 59.838 50.000 0.00 0.00 32.27 3.27
6537 6654 1.737793 CACTTACCCGTTCATTGCCTC 59.262 52.381 0.00 0.00 0.00 4.70
6540 6657 3.068560 TGTACACTTACCCGTTCATTGC 58.931 45.455 0.00 0.00 0.00 3.56
6592 6709 5.939764 ATGAACTAACATGGCACTAGAGA 57.060 39.130 0.00 0.00 0.00 3.10
6717 6834 3.071023 TCCACGTGGAACTGAGAATTCTT 59.929 43.478 34.60 0.00 42.18 2.52
6736 6853 0.764271 TGTCATGTGAACAGCCTCCA 59.236 50.000 0.00 0.00 0.00 3.86
6799 6916 8.537858 GGGACGGAAGGAGTATGTAAATATATT 58.462 37.037 0.00 0.00 0.00 1.28
6811 6928 3.649843 ACATTATGGGACGGAAGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
6812 6929 2.478292 ACATTATGGGACGGAAGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
6813 6930 4.344102 TCTTACATTATGGGACGGAAGGAG 59.656 45.833 0.00 0.00 0.00 3.69
6814 6931 4.100498 GTCTTACATTATGGGACGGAAGGA 59.900 45.833 0.00 0.00 0.00 3.36
6815 6932 4.377897 GTCTTACATTATGGGACGGAAGG 58.622 47.826 0.00 0.00 0.00 3.46
6816 6933 4.049186 CGTCTTACATTATGGGACGGAAG 58.951 47.826 20.50 6.42 43.69 3.46
6817 6934 3.738899 GCGTCTTACATTATGGGACGGAA 60.739 47.826 25.20 2.58 46.26 4.30
6818 6935 2.223876 GCGTCTTACATTATGGGACGGA 60.224 50.000 25.20 5.94 46.26 4.69
6819 6936 2.132762 GCGTCTTACATTATGGGACGG 58.867 52.381 25.20 14.78 46.26 4.79
6821 6938 3.793559 ACTGCGTCTTACATTATGGGAC 58.206 45.455 0.00 1.75 0.00 4.46
6822 6939 4.202182 GGTACTGCGTCTTACATTATGGGA 60.202 45.833 0.00 0.00 0.00 4.37
6823 6940 4.056050 GGTACTGCGTCTTACATTATGGG 58.944 47.826 0.00 0.00 0.00 4.00
6824 6941 4.689071 TGGTACTGCGTCTTACATTATGG 58.311 43.478 0.00 0.00 0.00 2.74
6825 6942 6.844696 AATGGTACTGCGTCTTACATTATG 57.155 37.500 0.00 0.00 0.00 1.90
6826 6943 8.951787 TTAAATGGTACTGCGTCTTACATTAT 57.048 30.769 0.00 0.00 0.00 1.28
6827 6944 8.774890 TTTAAATGGTACTGCGTCTTACATTA 57.225 30.769 0.00 0.00 0.00 1.90
6828 6945 7.675962 TTTAAATGGTACTGCGTCTTACATT 57.324 32.000 0.00 0.00 0.00 2.71
6829 6946 7.335924 ACATTTAAATGGTACTGCGTCTTACAT 59.664 33.333 27.43 2.36 40.70 2.29
6830 6947 6.651643 ACATTTAAATGGTACTGCGTCTTACA 59.348 34.615 27.43 0.00 40.70 2.41
6831 6948 7.068692 ACATTTAAATGGTACTGCGTCTTAC 57.931 36.000 27.43 0.00 40.70 2.34
6832 6949 7.675962 AACATTTAAATGGTACTGCGTCTTA 57.324 32.000 27.43 0.00 40.70 2.10
6833 6950 6.569179 AACATTTAAATGGTACTGCGTCTT 57.431 33.333 27.43 9.58 40.70 3.01
6834 6951 6.569179 AAACATTTAAATGGTACTGCGTCT 57.431 33.333 27.43 5.22 40.70 4.18
6835 6952 8.019094 ACTAAAACATTTAAATGGTACTGCGTC 58.981 33.333 27.43 0.00 40.70 5.19
6836 6953 7.878036 ACTAAAACATTTAAATGGTACTGCGT 58.122 30.769 27.43 14.15 40.70 5.24
6837 6954 8.635124 CAACTAAAACATTTAAATGGTACTGCG 58.365 33.333 27.43 13.63 40.70 5.18
6838 6955 9.471084 ACAACTAAAACATTTAAATGGTACTGC 57.529 29.630 27.43 0.00 40.70 4.40
6840 6957 9.974980 CCACAACTAAAACATTTAAATGGTACT 57.025 29.630 27.43 16.55 40.70 2.73
6841 6958 9.752961 ACCACAACTAAAACATTTAAATGGTAC 57.247 29.630 27.43 0.00 40.70 3.34
6866 6983 4.065088 TGCAACAGATTTACAGAGGTCAC 58.935 43.478 0.00 0.00 0.00 3.67
6871 6988 3.120060 GCACCTGCAACAGATTTACAGAG 60.120 47.826 0.00 0.00 41.59 3.35
7026 7143 1.000506 GGAGCTCCGGCGATATACAAA 59.999 52.381 19.06 0.00 44.37 2.83
7138 7255 6.466812 AGAAATTTCACCCTAAATGGCAAAG 58.533 36.000 19.99 0.00 0.00 2.77
7161 7278 1.942657 CCGATCCACATGTTAGCCAAG 59.057 52.381 0.00 0.00 0.00 3.61
7163 7280 0.908910 ACCGATCCACATGTTAGCCA 59.091 50.000 0.00 0.00 0.00 4.75
7225 7342 1.555477 CCGCCAACCTACCCAACCTA 61.555 60.000 0.00 0.00 0.00 3.08
7240 7357 4.015872 TGGAATGGAATAGAATACCGCC 57.984 45.455 0.00 0.00 0.00 6.13
7242 7359 7.928307 ATCAATGGAATGGAATAGAATACCG 57.072 36.000 0.00 0.00 23.88 4.02
7272 7389 7.472543 CAAGTGGAGTATAACAATTTACAGGC 58.527 38.462 0.00 0.00 0.00 4.85
7360 7477 6.700081 TGAGATAATAAAATCGTCCTTGTCGG 59.300 38.462 0.00 0.00 0.00 4.79
7361 7478 7.648112 TCTGAGATAATAAAATCGTCCTTGTCG 59.352 37.037 0.00 0.00 0.00 4.35
7393 7516 2.967362 TGTTTTGTATCCGCTCGATGT 58.033 42.857 0.00 0.00 31.92 3.06
7398 7521 6.604735 ACTCATAATGTTTTGTATCCGCTC 57.395 37.500 0.00 0.00 0.00 5.03
7401 7524 7.254658 GGTGGTACTCATAATGTTTTGTATCCG 60.255 40.741 0.00 0.00 0.00 4.18
7445 7568 8.584157 ACTTTTGGATTTGACTGTATGCATAAA 58.416 29.630 8.28 1.38 0.00 1.40
7446 7569 8.121305 ACTTTTGGATTTGACTGTATGCATAA 57.879 30.769 8.28 0.00 0.00 1.90
7447 7570 7.611467 AGACTTTTGGATTTGACTGTATGCATA 59.389 33.333 1.16 1.16 0.00 3.14
7453 7576 6.353323 TGTGAGACTTTTGGATTTGACTGTA 58.647 36.000 0.00 0.00 0.00 2.74
7482 7606 9.944663 GCCGATATGTCAGTTTTTATTTCATAA 57.055 29.630 0.00 0.00 0.00 1.90
7561 7687 0.758734 CCAGCATAACCTCCGGATCA 59.241 55.000 3.57 0.00 0.00 2.92
7599 7725 2.125106 GCAGGTGGCTACGAAGGG 60.125 66.667 0.00 0.00 40.25 3.95
7648 7774 0.889186 ACAATGACCGGAGCACCAAC 60.889 55.000 9.46 0.00 35.59 3.77
7670 7796 5.220989 GCACTCACTTCATACGTGGTCTATA 60.221 44.000 0.00 0.00 33.31 1.31
7688 7814 5.049954 GGTTATTTTCTGTTGTACGCACTCA 60.050 40.000 0.00 0.00 0.00 3.41
7821 8185 3.606687 GTCATTGGTTGGACGGTATTCT 58.393 45.455 0.00 0.00 0.00 2.40
7838 8202 7.093377 ACAAGTGTTGCCAATATATTTGGTCAT 60.093 33.333 14.31 1.89 41.53 3.06
7940 8304 3.061831 GCACTCATGACGAGACAATCAAG 59.938 47.826 0.00 0.00 45.45 3.02
7989 8353 2.729491 CTCGCACGACGCAACTGA 60.729 61.111 0.00 0.00 42.60 3.41
8019 8383 7.181305 TGGTATCTTCATAAGGGAGTTGTGTTA 59.819 37.037 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.