Multiple sequence alignment - TraesCS6B01G227900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G227900 chr6B 100.000 2756 0 0 1 2756 354954116 354956871 0.000000e+00 5090.0
1 TraesCS6B01G227900 chr6B 90.858 711 43 9 4 694 356090841 356091549 0.000000e+00 933.0
2 TraesCS6B01G227900 chr6B 93.013 458 26 4 4 456 372578734 372579190 0.000000e+00 664.0
3 TraesCS6B01G227900 chr6B 92.763 456 21 9 4 452 273891232 273891682 0.000000e+00 649.0
4 TraesCS6B01G227900 chr6B 92.544 456 26 5 7 455 26457767 26457313 0.000000e+00 647.0
5 TraesCS6B01G227900 chr6A 92.039 1658 120 7 833 2484 364308136 364306485 0.000000e+00 2320.0
6 TraesCS6B01G227900 chr6A 79.447 253 28 12 2519 2752 498600738 498600491 1.020000e-34 158.0
7 TraesCS6B01G227900 chr6D 94.133 1125 48 4 766 1889 254551400 254552507 0.000000e+00 1696.0
8 TraesCS6B01G227900 chr6D 86.481 540 70 3 1947 2484 254552586 254553124 8.500000e-165 590.0
9 TraesCS6B01G227900 chr6D 82.090 268 27 11 2508 2756 385133608 385133343 2.780000e-50 209.0
10 TraesCS6B01G227900 chr6D 81.250 256 29 5 2519 2756 381662903 381662649 3.620000e-44 189.0
11 TraesCS6B01G227900 chr6D 96.721 61 2 0 644 704 443285456 443285516 4.860000e-18 102.0
12 TraesCS6B01G227900 chr4D 93.226 1122 67 5 778 1897 20897874 20898988 0.000000e+00 1642.0
13 TraesCS6B01G227900 chr7B 93.142 452 25 4 4 451 586573393 586573842 0.000000e+00 658.0
14 TraesCS6B01G227900 chr7B 79.554 269 34 9 2508 2756 288382533 288382266 3.650000e-39 172.0
15 TraesCS6B01G227900 chr7B 91.935 62 5 0 644 705 648924958 648925019 1.360000e-13 87.9
16 TraesCS6B01G227900 chr5B 92.920 452 27 3 4 452 711713670 711714119 0.000000e+00 652.0
17 TraesCS6B01G227900 chr1B 92.920 452 27 3 7 454 82299184 82298734 0.000000e+00 652.0
18 TraesCS6B01G227900 chr1B 81.349 252 28 8 2516 2749 389009620 389009870 1.300000e-43 187.0
19 TraesCS6B01G227900 chr1B 90.385 104 10 0 2652 2755 197425153 197425256 1.330000e-28 137.0
20 TraesCS6B01G227900 chr3B 92.667 450 30 3 4 451 228095724 228096172 0.000000e+00 645.0
21 TraesCS6B01G227900 chr3B 84.969 326 47 2 2160 2484 668778019 668777695 2.050000e-86 329.0
22 TraesCS6B01G227900 chr2B 92.140 458 32 3 7 462 562157328 562156873 0.000000e+00 643.0
23 TraesCS6B01G227900 chr3D 85.231 325 48 0 2160 2484 506675780 506675456 4.400000e-88 335.0
24 TraesCS6B01G227900 chr3D 82.463 268 27 8 2508 2756 297235906 297235640 1.660000e-52 217.0
25 TraesCS6B01G227900 chr5D 81.955 266 31 6 2508 2756 373700437 373700172 2.780000e-50 209.0
26 TraesCS6B01G227900 chr5D 92.308 104 8 0 2652 2755 312907391 312907494 6.150000e-32 148.0
27 TraesCS6B01G227900 chr5D 95.238 63 3 0 644 706 207255521 207255583 1.750000e-17 100.0
28 TraesCS6B01G227900 chr5D 95.082 61 3 0 644 704 487581704 487581644 2.260000e-16 97.1
29 TraesCS6B01G227900 chr4A 82.490 257 25 9 2516 2753 76089684 76089939 1.000000e-49 207.0
30 TraesCS6B01G227900 chr3A 81.648 267 31 7 2508 2756 69940716 69940450 3.600000e-49 206.0
31 TraesCS6B01G227900 chr3A 81.481 270 32 5 2505 2756 118637100 118637369 3.600000e-49 206.0
32 TraesCS6B01G227900 chr2D 81.467 259 29 7 2516 2756 568406253 568406510 7.790000e-46 195.0
33 TraesCS6B01G227900 chr2D 79.478 268 36 7 2508 2756 264480342 264480075 3.650000e-39 172.0
34 TraesCS6B01G227900 chr2D 95.082 61 3 0 644 704 435208384 435208444 2.260000e-16 97.1
35 TraesCS6B01G227900 chr2A 78.409 176 35 3 2212 2386 518911429 518911602 8.070000e-21 111.0
36 TraesCS6B01G227900 chr1A 95.312 64 3 0 641 704 568323542 568323605 4.860000e-18 102.0
37 TraesCS6B01G227900 chr1A 80.000 90 17 1 2212 2301 126366757 126366669 6.370000e-07 65.8
38 TraesCS6B01G227900 chr7A 95.161 62 3 0 644 705 55334651 55334712 6.280000e-17 99.0
39 TraesCS6B01G227900 chr7D 95.082 61 3 0 644 704 503798833 503798773 2.260000e-16 97.1
40 TraesCS6B01G227900 chr5A 78.947 114 23 1 2212 2325 667223913 667223801 2.940000e-10 76.8
41 TraesCS6B01G227900 chr5A 96.774 31 1 0 2269 2299 374914578 374914548 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G227900 chr6B 354954116 354956871 2755 False 5090 5090 100.000 1 2756 1 chr6B.!!$F2 2755
1 TraesCS6B01G227900 chr6B 356090841 356091549 708 False 933 933 90.858 4 694 1 chr6B.!!$F3 690
2 TraesCS6B01G227900 chr6A 364306485 364308136 1651 True 2320 2320 92.039 833 2484 1 chr6A.!!$R1 1651
3 TraesCS6B01G227900 chr6D 254551400 254553124 1724 False 1143 1696 90.307 766 2484 2 chr6D.!!$F2 1718
4 TraesCS6B01G227900 chr4D 20897874 20898988 1114 False 1642 1642 93.226 778 1897 1 chr4D.!!$F1 1119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 934 0.034089 CATCCACACCCTTTCCTCCC 60.034 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 2586 0.108945 CGTTCCTGTTACCCTCGACC 60.109 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 7.048629 TGATTTTTATCAAGTGGCAGTTTGA 57.951 32.000 14.49 14.49 37.68 2.69
93 94 1.068264 GGCAGTTTGACTTAGCAAGCC 60.068 52.381 0.00 0.00 32.04 4.35
100 101 3.920231 TGACTTAGCAAGCCTGATGAT 57.080 42.857 0.00 0.00 0.00 2.45
119 120 5.688814 TGATATGGCATCATTAGGAGGAG 57.311 43.478 1.65 0.00 34.96 3.69
135 136 2.093106 AGGAGGTCACTGTAGCTAACG 58.907 52.381 0.00 0.00 0.00 3.18
144 145 3.057456 CACTGTAGCTAACGACTTGAGGT 60.057 47.826 0.00 0.00 0.00 3.85
148 149 4.520111 TGTAGCTAACGACTTGAGGTGTTA 59.480 41.667 0.00 0.00 0.00 2.41
160 161 7.259088 ACTTGAGGTGTTACATAATCTTCCT 57.741 36.000 0.00 0.00 0.00 3.36
266 269 8.391106 CACTATTGCCAATTGAGTAAGTCTTAC 58.609 37.037 13.94 13.94 36.38 2.34
272 275 5.168569 CAATTGAGTAAGTCTTACTGGCGA 58.831 41.667 26.44 14.68 46.01 5.54
274 277 3.682696 TGAGTAAGTCTTACTGGCGAGA 58.317 45.455 26.44 4.19 46.01 4.04
286 289 3.235200 ACTGGCGAGAAGAATAGGCTAT 58.765 45.455 1.44 0.00 0.00 2.97
287 290 3.006323 ACTGGCGAGAAGAATAGGCTATG 59.994 47.826 7.99 0.00 0.00 2.23
288 291 2.965831 TGGCGAGAAGAATAGGCTATGT 59.034 45.455 7.99 0.00 0.00 2.29
289 292 3.243873 TGGCGAGAAGAATAGGCTATGTG 60.244 47.826 7.99 0.00 0.00 3.21
290 293 3.243907 GGCGAGAAGAATAGGCTATGTGT 60.244 47.826 7.99 0.00 0.00 3.72
291 294 3.738282 GCGAGAAGAATAGGCTATGTGTG 59.262 47.826 7.99 0.00 0.00 3.82
312 315 3.068165 TGTGTGTGTGTGTTAGAGAGAGG 59.932 47.826 0.00 0.00 0.00 3.69
349 360 0.048117 AGAGGGAGGGGGAGAGAGTA 59.952 60.000 0.00 0.00 0.00 2.59
473 484 2.824689 TTGATAGGAGGCCATGCAAA 57.175 45.000 5.01 0.00 0.00 3.68
509 520 7.152645 GGGACTATGTTGTCGTGAATACATAT 58.847 38.462 0.00 0.00 37.81 1.78
512 523 8.575565 ACTATGTTGTCGTGAATACATATGAC 57.424 34.615 10.38 0.00 34.15 3.06
539 550 2.159272 GAGGCACACAAACGCGAGAC 62.159 60.000 15.93 0.00 0.00 3.36
611 638 4.379290 GGAGACAGACGTACTAAACTGGAC 60.379 50.000 4.90 0.00 35.08 4.02
641 668 1.794116 GGACGGTCGAAATTGACGAAA 59.206 47.619 9.06 0.00 41.31 3.46
643 670 3.466836 GACGGTCGAAATTGACGAAAAG 58.533 45.455 9.06 6.86 41.31 2.27
735 762 9.691362 TTAATAGTCAAAGGCAATTTCAGAAAC 57.309 29.630 0.00 0.00 0.00 2.78
736 763 4.948847 AGTCAAAGGCAATTTCAGAAACC 58.051 39.130 0.00 0.00 0.00 3.27
737 764 4.058124 GTCAAAGGCAATTTCAGAAACCC 58.942 43.478 0.00 0.00 0.00 4.11
738 765 3.966665 TCAAAGGCAATTTCAGAAACCCT 59.033 39.130 0.00 2.00 0.00 4.34
739 766 4.408596 TCAAAGGCAATTTCAGAAACCCTT 59.591 37.500 14.37 14.37 31.81 3.95
740 767 5.104569 TCAAAGGCAATTTCAGAAACCCTTT 60.105 36.000 20.88 20.88 37.26 3.11
741 768 6.098982 TCAAAGGCAATTTCAGAAACCCTTTA 59.901 34.615 23.57 15.34 35.91 1.85
742 769 6.686484 AAGGCAATTTCAGAAACCCTTTAT 57.314 33.333 14.37 0.01 0.00 1.40
743 770 7.790782 AAGGCAATTTCAGAAACCCTTTATA 57.209 32.000 14.37 0.00 0.00 0.98
744 771 7.170393 AGGCAATTTCAGAAACCCTTTATAC 57.830 36.000 0.00 0.00 0.00 1.47
745 772 6.154534 AGGCAATTTCAGAAACCCTTTATACC 59.845 38.462 0.00 0.00 0.00 2.73
746 773 6.033966 GCAATTTCAGAAACCCTTTATACCG 58.966 40.000 0.00 0.00 0.00 4.02
747 774 6.349860 GCAATTTCAGAAACCCTTTATACCGT 60.350 38.462 0.00 0.00 0.00 4.83
748 775 7.148205 GCAATTTCAGAAACCCTTTATACCGTA 60.148 37.037 0.00 0.00 0.00 4.02
749 776 8.899771 CAATTTCAGAAACCCTTTATACCGTAT 58.100 33.333 0.00 0.00 0.00 3.06
765 792 9.763837 TTATACCGTATATATATGGATGGAGGG 57.236 37.037 29.95 10.53 41.06 4.30
766 793 6.289482 ACCGTATATATATGGATGGAGGGA 57.711 41.667 29.95 0.00 41.06 4.20
767 794 6.315714 ACCGTATATATATGGATGGAGGGAG 58.684 44.000 29.95 6.90 41.06 4.30
774 801 2.294449 TGGATGGAGGGAGTATCTCG 57.706 55.000 0.00 0.00 43.84 4.04
776 803 1.889829 GGATGGAGGGAGTATCTCGTG 59.110 57.143 0.00 0.00 43.84 4.35
793 820 1.330521 CGTGTGAACCTCAAACCACAG 59.669 52.381 0.00 0.00 39.79 3.66
849 876 3.074687 TCTCTCTCTCAACGGCCCTATAT 59.925 47.826 0.00 0.00 0.00 0.86
890 917 2.168521 CCCTACCATTCGACTCACACAT 59.831 50.000 0.00 0.00 0.00 3.21
907 934 0.034089 CATCCACACCCTTTCCTCCC 60.034 60.000 0.00 0.00 0.00 4.30
935 962 7.147479 CCTCAAGAAAATAATCTCCTGGACCTA 60.147 40.741 0.00 0.00 0.00 3.08
958 987 0.474184 ACCAACAGAACCTCACCCTG 59.526 55.000 0.00 0.00 0.00 4.45
1032 1061 1.059098 TCAAGCACCTCATCCTGTGT 58.941 50.000 0.00 0.00 34.94 3.72
1049 1078 2.158682 TGTGTTCCAGCACTACCACATT 60.159 45.455 0.00 0.00 39.89 2.71
1059 1088 0.462047 CTACCACATTGTCCTCGGCC 60.462 60.000 0.00 0.00 0.00 6.13
1324 1353 0.973496 AGAGAGGTTCTTCGAGCCCC 60.973 60.000 0.00 0.00 33.27 5.80
1765 1795 8.690884 CAGAGTTCCTTGGATGATCGTATATAT 58.309 37.037 0.00 0.00 0.00 0.86
1766 1796 9.922477 AGAGTTCCTTGGATGATCGTATATATA 57.078 33.333 0.00 0.00 0.00 0.86
1770 1800 7.941919 TCCTTGGATGATCGTATATATACTGC 58.058 38.462 18.46 7.30 0.00 4.40
1907 1938 4.222124 ACTAGATGCAATTTTCGGTCCT 57.778 40.909 0.00 0.00 0.00 3.85
1934 1965 3.085952 CTCCATAAAAGTGGGAGGCAA 57.914 47.619 0.00 0.00 43.59 4.52
1965 2037 1.003355 ATGACGCTGTCCTGGTTGG 60.003 57.895 6.30 0.00 37.10 3.77
1969 2041 1.101049 ACGCTGTCCTGGTTGGTTTG 61.101 55.000 0.00 0.00 37.07 2.93
1971 2043 2.041153 CTGTCCTGGTTGGTTTGCC 58.959 57.895 0.00 0.00 37.07 4.52
1979 2051 1.072489 TGGTTGGTTTGCCGTCTATGA 59.928 47.619 0.00 0.00 37.67 2.15
1982 2054 2.812011 GTTGGTTTGCCGTCTATGAAGT 59.188 45.455 0.00 0.00 37.67 3.01
1983 2055 3.134574 TGGTTTGCCGTCTATGAAGTT 57.865 42.857 0.00 0.00 37.67 2.66
2015 2089 6.541111 AGAAAAAGTCATACGTCCAACTTC 57.459 37.500 9.09 0.16 30.99 3.01
2025 2099 9.477484 GTCATACGTCCAACTTCATAGATAAAT 57.523 33.333 0.00 0.00 0.00 1.40
2030 2104 7.442364 ACGTCCAACTTCATAGATAAATCCATG 59.558 37.037 0.00 0.00 0.00 3.66
2036 2110 7.520798 ACTTCATAGATAAATCCATGAGGCAA 58.479 34.615 9.36 0.00 36.17 4.52
2045 2119 3.627395 TCCATGAGGCAAAGTACGAAT 57.373 42.857 0.00 0.00 33.74 3.34
2046 2120 3.950397 TCCATGAGGCAAAGTACGAATT 58.050 40.909 0.00 0.00 33.74 2.17
2055 2129 4.392138 GGCAAAGTACGAATTAGAGCAAGT 59.608 41.667 0.00 0.00 0.00 3.16
2063 2137 5.302360 ACGAATTAGAGCAAGTAACCAACA 58.698 37.500 0.00 0.00 0.00 3.33
2072 2146 6.038271 AGAGCAAGTAACCAACAAAACAGTAG 59.962 38.462 0.00 0.00 0.00 2.57
2077 2151 5.820947 AGTAACCAACAAAACAGTAGACCAG 59.179 40.000 0.00 0.00 0.00 4.00
2083 2157 6.147821 CCAACAAAACAGTAGACCAGAGTATG 59.852 42.308 0.00 0.00 0.00 2.39
2084 2158 6.420913 ACAAAACAGTAGACCAGAGTATGT 57.579 37.500 0.00 0.00 0.00 2.29
2098 2172 3.587506 AGAGTATGTAGGCCAACAACCTT 59.412 43.478 5.01 0.00 38.81 3.50
2099 2173 4.781087 AGAGTATGTAGGCCAACAACCTTA 59.219 41.667 5.01 0.00 38.81 2.69
2108 2182 0.238289 CAACAACCTTAGCACGCAGG 59.762 55.000 0.00 0.00 36.10 4.85
2109 2183 0.179029 AACAACCTTAGCACGCAGGT 60.179 50.000 0.00 0.00 46.04 4.00
2112 2186 0.320771 AACCTTAGCACGCAGGTCAG 60.321 55.000 1.86 0.00 43.05 3.51
2121 2195 1.375140 CGCAGGTCAGCACAGTCAT 60.375 57.895 0.00 0.00 0.00 3.06
2129 2203 2.101575 GCACAGTCATGGCATGCG 59.898 61.111 22.56 14.89 0.00 4.73
2130 2204 2.795973 CACAGTCATGGCATGCGG 59.204 61.111 22.56 18.59 0.00 5.69
2167 2241 2.249139 ACTAACAGGAAGGAGAAGCGT 58.751 47.619 0.00 0.00 0.00 5.07
2231 2305 2.415857 GAGACGTCAGAAGCTCGAACTA 59.584 50.000 19.50 0.00 0.00 2.24
2247 2321 2.231215 ACTATCGCAATCAGCACCTC 57.769 50.000 0.00 0.00 46.13 3.85
2260 2334 1.525923 CACCTCCAGAGCATCCCAG 59.474 63.158 0.00 0.00 33.66 4.45
2289 2363 6.176183 CAACCTTAGTCAATGATCTCCACTT 58.824 40.000 0.00 0.00 0.00 3.16
2336 2410 3.679389 AGACAATCAGTGGGCTTGTTAG 58.321 45.455 7.69 0.00 33.46 2.34
2354 2428 5.181009 TGTTAGAGAACAGATGCTCAATGG 58.819 41.667 0.00 0.00 40.72 3.16
2366 2440 8.416329 ACAGATGCTCAATGGTAAATTTATTCC 58.584 33.333 0.31 0.00 0.00 3.01
2391 2465 0.820871 GTCCACAAAGCCCAACACAA 59.179 50.000 0.00 0.00 0.00 3.33
2394 2468 1.289276 CACAAAGCCCAACACAAAGC 58.711 50.000 0.00 0.00 0.00 3.51
2419 2493 4.252878 CAAACCCCAACCAGAATAAATGC 58.747 43.478 0.00 0.00 0.00 3.56
2433 2507 5.483583 AGAATAAATGCTTGTTTTGGCCCTA 59.516 36.000 0.00 0.00 0.00 3.53
2453 2527 1.004918 AGCCCAGACGTAAGCACAC 60.005 57.895 0.00 0.00 45.62 3.82
2454 2528 1.301401 GCCCAGACGTAAGCACACA 60.301 57.895 0.00 0.00 45.62 3.72
2462 2536 1.068194 ACGTAAGCACACAGAGCTCTC 60.068 52.381 14.96 1.68 42.53 3.20
2486 2561 3.765968 GAATTGGGTTCCCAGGTGT 57.234 52.632 10.62 0.00 37.42 4.16
2487 2562 1.545841 GAATTGGGTTCCCAGGTGTC 58.454 55.000 10.62 4.07 37.42 3.67
2488 2563 0.251165 AATTGGGTTCCCAGGTGTCG 60.251 55.000 10.62 0.00 37.42 4.35
2489 2564 2.137177 ATTGGGTTCCCAGGTGTCGG 62.137 60.000 10.62 0.00 37.42 4.79
2490 2565 3.246880 GGGTTCCCAGGTGTCGGT 61.247 66.667 2.59 0.00 0.00 4.69
2491 2566 2.032071 GGTTCCCAGGTGTCGGTG 59.968 66.667 0.00 0.00 0.00 4.94
2492 2567 2.814835 GGTTCCCAGGTGTCGGTGT 61.815 63.158 0.00 0.00 0.00 4.16
2493 2568 1.147600 GTTCCCAGGTGTCGGTGTT 59.852 57.895 0.00 0.00 0.00 3.32
2494 2569 0.393820 GTTCCCAGGTGTCGGTGTTA 59.606 55.000 0.00 0.00 0.00 2.41
2495 2570 1.129917 TTCCCAGGTGTCGGTGTTAA 58.870 50.000 0.00 0.00 0.00 2.01
2496 2571 1.129917 TCCCAGGTGTCGGTGTTAAA 58.870 50.000 0.00 0.00 0.00 1.52
2497 2572 1.489649 TCCCAGGTGTCGGTGTTAAAA 59.510 47.619 0.00 0.00 0.00 1.52
2498 2573 1.605232 CCCAGGTGTCGGTGTTAAAAC 59.395 52.381 0.00 0.00 0.00 2.43
2499 2574 1.605232 CCAGGTGTCGGTGTTAAAACC 59.395 52.381 4.53 4.53 36.82 3.27
2500 2575 2.290464 CAGGTGTCGGTGTTAAAACCA 58.710 47.619 15.30 0.00 40.53 3.67
2501 2576 2.289547 CAGGTGTCGGTGTTAAAACCAG 59.710 50.000 15.30 7.81 40.53 4.00
2502 2577 1.002142 GGTGTCGGTGTTAAAACCAGC 60.002 52.381 15.30 7.09 40.53 4.85
2503 2578 1.671845 GTGTCGGTGTTAAAACCAGCA 59.328 47.619 15.30 9.53 40.53 4.41
2504 2579 1.944024 TGTCGGTGTTAAAACCAGCAG 59.056 47.619 15.30 0.00 40.53 4.24
2505 2580 2.215196 GTCGGTGTTAAAACCAGCAGA 58.785 47.619 15.30 1.00 40.53 4.26
2506 2581 2.032290 GTCGGTGTTAAAACCAGCAGAC 60.032 50.000 15.30 9.73 40.53 3.51
2507 2582 1.265905 CGGTGTTAAAACCAGCAGACC 59.734 52.381 15.30 0.00 40.53 3.85
2508 2583 2.583143 GGTGTTAAAACCAGCAGACCT 58.417 47.619 10.17 0.00 40.22 3.85
2509 2584 2.552743 GGTGTTAAAACCAGCAGACCTC 59.447 50.000 10.17 0.00 40.22 3.85
2510 2585 2.223377 GTGTTAAAACCAGCAGACCTCG 59.777 50.000 0.00 0.00 0.00 4.63
2511 2586 1.804748 GTTAAAACCAGCAGACCTCGG 59.195 52.381 0.00 0.00 0.00 4.63
2512 2587 0.323629 TAAAACCAGCAGACCTCGGG 59.676 55.000 0.00 0.00 0.00 5.14
2513 2588 1.705997 AAAACCAGCAGACCTCGGGT 61.706 55.000 0.00 0.00 39.44 5.28
2525 2600 4.007457 TCGGGTCGAGGGTAACAG 57.993 61.111 0.00 0.00 39.74 3.16
2526 2601 1.679977 TCGGGTCGAGGGTAACAGG 60.680 63.158 0.00 0.00 39.74 4.00
2527 2602 1.679977 CGGGTCGAGGGTAACAGGA 60.680 63.158 0.00 0.00 39.74 3.86
2528 2603 1.252904 CGGGTCGAGGGTAACAGGAA 61.253 60.000 0.00 0.00 39.74 3.36
2529 2604 0.248565 GGGTCGAGGGTAACAGGAAC 59.751 60.000 0.00 0.00 39.74 3.62
2530 2605 0.108945 GGTCGAGGGTAACAGGAACG 60.109 60.000 0.00 0.00 39.74 3.95
2531 2606 0.883833 GTCGAGGGTAACAGGAACGA 59.116 55.000 0.00 0.00 39.74 3.85
2532 2607 1.270550 GTCGAGGGTAACAGGAACGAA 59.729 52.381 0.00 0.00 39.74 3.85
2533 2608 1.542915 TCGAGGGTAACAGGAACGAAG 59.457 52.381 0.00 0.00 39.74 3.79
2534 2609 1.403780 CGAGGGTAACAGGAACGAAGG 60.404 57.143 0.00 0.00 39.74 3.46
2535 2610 1.897802 GAGGGTAACAGGAACGAAGGA 59.102 52.381 0.00 0.00 39.74 3.36
2536 2611 1.900486 AGGGTAACAGGAACGAAGGAG 59.100 52.381 0.00 0.00 39.74 3.69
2537 2612 1.897802 GGGTAACAGGAACGAAGGAGA 59.102 52.381 0.00 0.00 39.74 3.71
2538 2613 2.500504 GGGTAACAGGAACGAAGGAGAT 59.499 50.000 0.00 0.00 39.74 2.75
2539 2614 3.703052 GGGTAACAGGAACGAAGGAGATA 59.297 47.826 0.00 0.00 39.74 1.98
2540 2615 4.202131 GGGTAACAGGAACGAAGGAGATAG 60.202 50.000 0.00 0.00 39.74 2.08
2541 2616 4.401837 GGTAACAGGAACGAAGGAGATAGT 59.598 45.833 0.00 0.00 0.00 2.12
2542 2617 4.457834 AACAGGAACGAAGGAGATAGTG 57.542 45.455 0.00 0.00 0.00 2.74
2543 2618 3.432378 ACAGGAACGAAGGAGATAGTGT 58.568 45.455 0.00 0.00 0.00 3.55
2544 2619 3.833070 ACAGGAACGAAGGAGATAGTGTT 59.167 43.478 0.00 0.00 0.00 3.32
2545 2620 4.283722 ACAGGAACGAAGGAGATAGTGTTT 59.716 41.667 0.00 0.00 0.00 2.83
2546 2621 5.479375 ACAGGAACGAAGGAGATAGTGTTTA 59.521 40.000 0.00 0.00 0.00 2.01
2547 2622 5.805994 CAGGAACGAAGGAGATAGTGTTTAC 59.194 44.000 0.00 0.00 0.00 2.01
2548 2623 5.715753 AGGAACGAAGGAGATAGTGTTTACT 59.284 40.000 0.00 0.00 40.99 2.24
2549 2624 6.210984 AGGAACGAAGGAGATAGTGTTTACTT 59.789 38.462 0.00 0.00 38.36 2.24
2550 2625 7.395489 AGGAACGAAGGAGATAGTGTTTACTTA 59.605 37.037 0.00 0.00 38.36 2.24
2551 2626 7.701501 GGAACGAAGGAGATAGTGTTTACTTAG 59.298 40.741 0.00 0.00 38.36 2.18
2552 2627 7.098074 ACGAAGGAGATAGTGTTTACTTAGG 57.902 40.000 0.00 0.00 38.36 2.69
2553 2628 6.662663 ACGAAGGAGATAGTGTTTACTTAGGT 59.337 38.462 0.00 0.00 38.36 3.08
2554 2629 7.178097 ACGAAGGAGATAGTGTTTACTTAGGTT 59.822 37.037 0.00 0.00 38.36 3.50
2555 2630 7.701501 CGAAGGAGATAGTGTTTACTTAGGTTC 59.298 40.741 0.00 0.00 38.36 3.62
2556 2631 7.098074 AGGAGATAGTGTTTACTTAGGTTCG 57.902 40.000 0.00 0.00 38.36 3.95
2557 2632 6.096564 AGGAGATAGTGTTTACTTAGGTTCGG 59.903 42.308 0.00 0.00 38.36 4.30
2558 2633 6.096001 GGAGATAGTGTTTACTTAGGTTCGGA 59.904 42.308 0.00 0.00 38.36 4.55
2559 2634 6.861144 AGATAGTGTTTACTTAGGTTCGGAC 58.139 40.000 0.00 0.00 38.36 4.79
2560 2635 4.263018 AGTGTTTACTTAGGTTCGGACC 57.737 45.455 4.03 4.03 39.14 4.46
2561 2636 3.007290 AGTGTTTACTTAGGTTCGGACCC 59.993 47.826 10.03 0.00 39.48 4.46
2562 2637 5.243110 AGTGTTTACTTAGGTTCGGACCCT 61.243 45.833 10.03 0.00 39.48 4.34
2563 2638 7.020652 AGTGTTTACTTAGGTTCGGACCCTC 62.021 48.000 10.03 0.00 39.48 4.30
2564 2639 9.820470 TAGTGTTTACTTAGGTTCGGACCCTCT 62.820 44.444 10.03 0.35 41.44 3.69
2585 2660 0.236449 GGTTGAGGTAAAACCGTGCG 59.764 55.000 0.00 0.00 44.90 5.34
2586 2661 0.939419 GTTGAGGTAAAACCGTGCGT 59.061 50.000 0.00 0.00 44.90 5.24
2587 2662 1.070376 GTTGAGGTAAAACCGTGCGTC 60.070 52.381 0.00 0.00 44.90 5.19
2588 2663 0.600782 TGAGGTAAAACCGTGCGTCC 60.601 55.000 0.00 0.00 44.90 4.79
2589 2664 0.320160 GAGGTAAAACCGTGCGTCCT 60.320 55.000 0.00 0.00 44.90 3.85
2590 2665 0.601841 AGGTAAAACCGTGCGTCCTG 60.602 55.000 0.00 0.00 44.90 3.86
2591 2666 1.205820 GTAAAACCGTGCGTCCTGC 59.794 57.895 0.00 0.00 46.70 4.85
2592 2667 1.070105 TAAAACCGTGCGTCCTGCT 59.930 52.632 0.00 0.00 46.63 4.24
2593 2668 0.947180 TAAAACCGTGCGTCCTGCTC 60.947 55.000 0.00 0.00 46.63 4.26
2594 2669 2.660258 AAAACCGTGCGTCCTGCTCT 62.660 55.000 0.00 0.00 46.63 4.09
2595 2670 2.660258 AAACCGTGCGTCCTGCTCTT 62.660 55.000 0.00 0.00 46.63 2.85
2596 2671 3.114616 CCGTGCGTCCTGCTCTTG 61.115 66.667 0.00 0.00 46.63 3.02
2597 2672 2.356313 CGTGCGTCCTGCTCTTGT 60.356 61.111 0.00 0.00 46.63 3.16
2598 2673 1.956170 CGTGCGTCCTGCTCTTGTT 60.956 57.895 0.00 0.00 46.63 2.83
2599 2674 1.498865 CGTGCGTCCTGCTCTTGTTT 61.499 55.000 0.00 0.00 46.63 2.83
2600 2675 1.508632 GTGCGTCCTGCTCTTGTTTA 58.491 50.000 0.00 0.00 46.63 2.01
2601 2676 2.076863 GTGCGTCCTGCTCTTGTTTAT 58.923 47.619 0.00 0.00 46.63 1.40
2602 2677 3.259064 GTGCGTCCTGCTCTTGTTTATA 58.741 45.455 0.00 0.00 46.63 0.98
2603 2678 3.871594 GTGCGTCCTGCTCTTGTTTATAT 59.128 43.478 0.00 0.00 46.63 0.86
2604 2679 4.332819 GTGCGTCCTGCTCTTGTTTATATT 59.667 41.667 0.00 0.00 46.63 1.28
2605 2680 4.332543 TGCGTCCTGCTCTTGTTTATATTG 59.667 41.667 0.00 0.00 46.63 1.90
2606 2681 4.260784 GCGTCCTGCTCTTGTTTATATTGG 60.261 45.833 0.00 0.00 41.73 3.16
2607 2682 4.876107 CGTCCTGCTCTTGTTTATATTGGT 59.124 41.667 0.00 0.00 0.00 3.67
2608 2683 5.220662 CGTCCTGCTCTTGTTTATATTGGTG 60.221 44.000 0.00 0.00 0.00 4.17
2609 2684 5.880332 GTCCTGCTCTTGTTTATATTGGTGA 59.120 40.000 0.00 0.00 0.00 4.02
2610 2685 6.374333 GTCCTGCTCTTGTTTATATTGGTGAA 59.626 38.462 0.00 0.00 0.00 3.18
2611 2686 6.599244 TCCTGCTCTTGTTTATATTGGTGAAG 59.401 38.462 0.00 0.00 0.00 3.02
2612 2687 6.599244 CCTGCTCTTGTTTATATTGGTGAAGA 59.401 38.462 0.00 0.00 0.00 2.87
2613 2688 7.284034 CCTGCTCTTGTTTATATTGGTGAAGAT 59.716 37.037 0.00 0.00 0.00 2.40
2614 2689 7.988737 TGCTCTTGTTTATATTGGTGAAGATG 58.011 34.615 0.00 0.00 0.00 2.90
2615 2690 7.611467 TGCTCTTGTTTATATTGGTGAAGATGT 59.389 33.333 0.00 0.00 0.00 3.06
2616 2691 9.109393 GCTCTTGTTTATATTGGTGAAGATGTA 57.891 33.333 0.00 0.00 0.00 2.29
2621 2696 9.040939 TGTTTATATTGGTGAAGATGTATCACG 57.959 33.333 1.07 0.00 46.41 4.35
2622 2697 9.042008 GTTTATATTGGTGAAGATGTATCACGT 57.958 33.333 1.07 0.00 46.41 4.49
2624 2699 9.687210 TTATATTGGTGAAGATGTATCACGTAC 57.313 33.333 0.00 0.00 46.41 3.67
2625 2700 5.394224 TTGGTGAAGATGTATCACGTACA 57.606 39.130 0.00 0.00 46.41 2.90
2626 2701 4.993905 TGGTGAAGATGTATCACGTACAG 58.006 43.478 0.00 0.00 45.94 2.74
2627 2702 4.703093 TGGTGAAGATGTATCACGTACAGA 59.297 41.667 0.00 0.00 45.94 3.41
2628 2703 5.163652 TGGTGAAGATGTATCACGTACAGAG 60.164 44.000 0.00 0.00 45.94 3.35
2629 2704 5.163642 GGTGAAGATGTATCACGTACAGAGT 60.164 44.000 0.00 0.00 45.94 3.24
2630 2705 6.323266 GTGAAGATGTATCACGTACAGAGTT 58.677 40.000 0.00 0.00 45.94 3.01
2631 2706 6.251589 GTGAAGATGTATCACGTACAGAGTTG 59.748 42.308 0.00 0.00 45.94 3.16
2632 2707 6.150474 TGAAGATGTATCACGTACAGAGTTGA 59.850 38.462 0.00 0.00 45.94 3.18
2633 2708 5.881447 AGATGTATCACGTACAGAGTTGAC 58.119 41.667 0.00 0.00 45.94 3.18
2634 2709 4.430137 TGTATCACGTACAGAGTTGACC 57.570 45.455 0.00 0.00 38.37 4.02
2635 2710 4.077108 TGTATCACGTACAGAGTTGACCT 58.923 43.478 0.00 0.00 38.37 3.85
2636 2711 5.247862 TGTATCACGTACAGAGTTGACCTA 58.752 41.667 0.00 0.00 38.37 3.08
2637 2712 4.698583 ATCACGTACAGAGTTGACCTAC 57.301 45.455 0.00 0.00 0.00 3.18
2638 2713 2.816087 TCACGTACAGAGTTGACCTACC 59.184 50.000 0.00 0.00 0.00 3.18
2639 2714 2.818432 CACGTACAGAGTTGACCTACCT 59.182 50.000 0.00 0.00 0.00 3.08
2640 2715 3.080319 ACGTACAGAGTTGACCTACCTC 58.920 50.000 0.00 0.00 0.00 3.85
2641 2716 3.244840 ACGTACAGAGTTGACCTACCTCT 60.245 47.826 0.00 0.00 36.00 3.69
2643 2718 2.663826 CAGAGTTGACCTACCTCTGC 57.336 55.000 3.25 0.00 43.92 4.26
2644 2719 1.205893 CAGAGTTGACCTACCTCTGCC 59.794 57.143 3.25 0.00 43.92 4.85
2645 2720 1.203187 AGAGTTGACCTACCTCTGCCA 60.203 52.381 0.00 0.00 34.37 4.92
2646 2721 1.834263 GAGTTGACCTACCTCTGCCAT 59.166 52.381 0.00 0.00 0.00 4.40
2647 2722 1.556911 AGTTGACCTACCTCTGCCATG 59.443 52.381 0.00 0.00 0.00 3.66
2648 2723 1.555075 GTTGACCTACCTCTGCCATGA 59.445 52.381 0.00 0.00 0.00 3.07
2649 2724 1.951209 TGACCTACCTCTGCCATGAA 58.049 50.000 0.00 0.00 0.00 2.57
2650 2725 1.555075 TGACCTACCTCTGCCATGAAC 59.445 52.381 0.00 0.00 0.00 3.18
2651 2726 0.537188 ACCTACCTCTGCCATGAACG 59.463 55.000 0.00 0.00 0.00 3.95
2652 2727 0.179073 CCTACCTCTGCCATGAACGG 60.179 60.000 0.00 0.00 0.00 4.44
2661 2736 3.853104 CCATGAACGGCTAGGTGAA 57.147 52.632 0.00 0.00 0.00 3.18
2662 2737 2.332063 CCATGAACGGCTAGGTGAAT 57.668 50.000 0.00 0.00 0.00 2.57
2663 2738 1.942657 CCATGAACGGCTAGGTGAATG 59.057 52.381 0.00 0.00 0.00 2.67
2664 2739 2.419990 CCATGAACGGCTAGGTGAATGA 60.420 50.000 0.00 0.00 0.00 2.57
2665 2740 3.470709 CATGAACGGCTAGGTGAATGAT 58.529 45.455 0.00 0.00 0.00 2.45
2666 2741 3.627395 TGAACGGCTAGGTGAATGATT 57.373 42.857 0.00 0.00 0.00 2.57
2667 2742 3.950397 TGAACGGCTAGGTGAATGATTT 58.050 40.909 0.00 0.00 0.00 2.17
2668 2743 4.331968 TGAACGGCTAGGTGAATGATTTT 58.668 39.130 0.00 0.00 0.00 1.82
2669 2744 4.155826 TGAACGGCTAGGTGAATGATTTTG 59.844 41.667 0.00 0.00 0.00 2.44
2670 2745 2.423538 ACGGCTAGGTGAATGATTTTGC 59.576 45.455 0.00 0.00 0.00 3.68
2671 2746 2.423185 CGGCTAGGTGAATGATTTTGCA 59.577 45.455 0.00 0.00 0.00 4.08
2672 2747 3.067180 CGGCTAGGTGAATGATTTTGCAT 59.933 43.478 0.00 0.00 0.00 3.96
2673 2748 4.440525 CGGCTAGGTGAATGATTTTGCATT 60.441 41.667 0.00 0.00 40.96 3.56
2674 2749 4.807304 GGCTAGGTGAATGATTTTGCATTG 59.193 41.667 0.00 0.00 38.53 2.82
2675 2750 5.394443 GGCTAGGTGAATGATTTTGCATTGA 60.394 40.000 0.00 0.00 38.53 2.57
2676 2751 6.278363 GCTAGGTGAATGATTTTGCATTGAT 58.722 36.000 0.00 0.00 38.53 2.57
2677 2752 6.200286 GCTAGGTGAATGATTTTGCATTGATG 59.800 38.462 0.00 0.00 38.53 3.07
2678 2753 6.045072 AGGTGAATGATTTTGCATTGATGT 57.955 33.333 0.00 0.00 38.53 3.06
2679 2754 6.103997 AGGTGAATGATTTTGCATTGATGTC 58.896 36.000 0.00 0.00 38.53 3.06
2680 2755 5.292589 GGTGAATGATTTTGCATTGATGTCC 59.707 40.000 0.00 0.00 38.53 4.02
2681 2756 5.292589 GTGAATGATTTTGCATTGATGTCCC 59.707 40.000 0.00 0.00 38.53 4.46
2682 2757 3.891422 TGATTTTGCATTGATGTCCCC 57.109 42.857 0.00 0.00 0.00 4.81
2683 2758 3.443052 TGATTTTGCATTGATGTCCCCT 58.557 40.909 0.00 0.00 0.00 4.79
2684 2759 3.448301 TGATTTTGCATTGATGTCCCCTC 59.552 43.478 0.00 0.00 0.00 4.30
2685 2760 2.905415 TTTGCATTGATGTCCCCTCT 57.095 45.000 0.00 0.00 0.00 3.69
2686 2761 4.314522 TTTTGCATTGATGTCCCCTCTA 57.685 40.909 0.00 0.00 0.00 2.43
2687 2762 3.281727 TTGCATTGATGTCCCCTCTAC 57.718 47.619 0.00 0.00 0.00 2.59
2688 2763 1.138859 TGCATTGATGTCCCCTCTACG 59.861 52.381 0.00 0.00 0.00 3.51
2689 2764 1.541233 GCATTGATGTCCCCTCTACGG 60.541 57.143 0.00 0.00 0.00 4.02
2702 2777 3.926616 CCTCTACGGGCTAAACCATATG 58.073 50.000 0.00 0.00 42.05 1.78
2703 2778 3.306780 CCTCTACGGGCTAAACCATATGG 60.307 52.174 20.68 20.68 42.05 2.74
2704 2779 2.038033 TCTACGGGCTAAACCATATGGC 59.962 50.000 22.18 7.00 42.05 4.40
2705 2780 0.843984 ACGGGCTAAACCATATGGCT 59.156 50.000 22.18 6.77 42.05 4.75
2706 2781 1.214424 ACGGGCTAAACCATATGGCTT 59.786 47.619 22.18 18.12 42.05 4.35
2707 2782 2.440253 ACGGGCTAAACCATATGGCTTA 59.560 45.455 22.18 18.27 42.05 3.09
2708 2783 3.073946 ACGGGCTAAACCATATGGCTTAT 59.926 43.478 22.18 7.93 42.05 1.73
2709 2784 4.287585 ACGGGCTAAACCATATGGCTTATA 59.712 41.667 22.18 8.64 42.05 0.98
2710 2785 4.634443 CGGGCTAAACCATATGGCTTATAC 59.366 45.833 22.18 13.87 42.05 1.47
2711 2786 5.566469 GGGCTAAACCATATGGCTTATACA 58.434 41.667 22.18 0.00 42.05 2.29
2712 2787 5.414765 GGGCTAAACCATATGGCTTATACAC 59.585 44.000 22.18 12.08 42.05 2.90
2713 2788 6.001460 GGCTAAACCATATGGCTTATACACA 58.999 40.000 22.18 0.00 39.32 3.72
2714 2789 6.072673 GGCTAAACCATATGGCTTATACACAC 60.073 42.308 22.18 5.86 39.32 3.82
2715 2790 6.485313 GCTAAACCATATGGCTTATACACACA 59.515 38.462 22.18 0.00 39.32 3.72
2716 2791 6.693315 AAACCATATGGCTTATACACACAC 57.307 37.500 22.18 0.00 39.32 3.82
2717 2792 4.714632 ACCATATGGCTTATACACACACC 58.285 43.478 22.18 0.00 39.32 4.16
2718 2793 4.165180 ACCATATGGCTTATACACACACCA 59.835 41.667 22.18 0.00 39.32 4.17
2719 2794 5.129634 CCATATGGCTTATACACACACCAA 58.870 41.667 9.29 0.00 0.00 3.67
2720 2795 5.239306 CCATATGGCTTATACACACACCAAG 59.761 44.000 9.29 0.00 0.00 3.61
2721 2796 3.780804 TGGCTTATACACACACCAAGT 57.219 42.857 0.00 0.00 0.00 3.16
2722 2797 4.893829 TGGCTTATACACACACCAAGTA 57.106 40.909 0.00 0.00 0.00 2.24
2723 2798 4.827692 TGGCTTATACACACACCAAGTAG 58.172 43.478 0.00 0.00 0.00 2.57
2724 2799 4.189231 GGCTTATACACACACCAAGTAGG 58.811 47.826 0.00 0.00 45.67 3.18
2725 2800 4.189231 GCTTATACACACACCAAGTAGGG 58.811 47.826 0.00 0.00 43.89 3.53
2726 2801 4.323257 GCTTATACACACACCAAGTAGGGT 60.323 45.833 0.00 0.00 43.89 4.34
2727 2802 5.105228 GCTTATACACACACCAAGTAGGGTA 60.105 44.000 0.00 0.00 43.89 3.69
2728 2803 6.407752 GCTTATACACACACCAAGTAGGGTAT 60.408 42.308 0.00 0.00 43.89 2.73
2729 2804 3.975168 ACACACACCAAGTAGGGTATC 57.025 47.619 0.00 0.00 43.89 2.24
2730 2805 3.517612 ACACACACCAAGTAGGGTATCT 58.482 45.455 0.00 0.00 43.89 1.98
2731 2806 4.680407 ACACACACCAAGTAGGGTATCTA 58.320 43.478 0.00 0.00 43.89 1.98
2732 2807 4.710375 ACACACACCAAGTAGGGTATCTAG 59.290 45.833 0.00 0.00 43.89 2.43
2733 2808 4.099573 CACACACCAAGTAGGGTATCTAGG 59.900 50.000 0.00 0.00 43.89 3.02
2734 2809 3.641906 CACACCAAGTAGGGTATCTAGGG 59.358 52.174 0.00 0.00 43.89 3.53
2735 2810 3.274153 ACACCAAGTAGGGTATCTAGGGT 59.726 47.826 0.00 0.00 43.89 4.34
2736 2811 4.265169 ACACCAAGTAGGGTATCTAGGGTT 60.265 45.833 0.00 0.00 43.89 4.11
2737 2812 5.043130 ACACCAAGTAGGGTATCTAGGGTTA 60.043 44.000 0.00 0.00 43.89 2.85
2738 2813 5.303845 CACCAAGTAGGGTATCTAGGGTTAC 59.696 48.000 0.00 0.00 43.89 2.50
2739 2814 5.043130 ACCAAGTAGGGTATCTAGGGTTACA 60.043 44.000 0.00 0.00 43.89 2.41
2740 2815 5.901276 CCAAGTAGGGTATCTAGGGTTACAA 59.099 44.000 0.00 0.00 0.00 2.41
2741 2816 6.041751 CCAAGTAGGGTATCTAGGGTTACAAG 59.958 46.154 0.00 0.00 0.00 3.16
2742 2817 5.713807 AGTAGGGTATCTAGGGTTACAAGG 58.286 45.833 0.00 0.00 0.00 3.61
2743 2818 4.639019 AGGGTATCTAGGGTTACAAGGT 57.361 45.455 0.00 0.00 0.00 3.50
2744 2819 4.554683 AGGGTATCTAGGGTTACAAGGTC 58.445 47.826 0.00 0.00 0.00 3.85
2745 2820 3.320256 GGGTATCTAGGGTTACAAGGTCG 59.680 52.174 0.00 0.00 0.00 4.79
2746 2821 3.320256 GGTATCTAGGGTTACAAGGTCGG 59.680 52.174 0.00 0.00 0.00 4.79
2747 2822 2.610438 TCTAGGGTTACAAGGTCGGT 57.390 50.000 0.00 0.00 0.00 4.69
2748 2823 3.737559 TCTAGGGTTACAAGGTCGGTA 57.262 47.619 0.00 0.00 0.00 4.02
2749 2824 3.356290 TCTAGGGTTACAAGGTCGGTAC 58.644 50.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.728088 ATAAATCATTTCGTCAAACAGTGAAC 57.272 30.769 0.00 0.00 38.23 3.18
30 31 9.845740 AGCCCAGTTCAAATTAAAAATAAAGTT 57.154 25.926 0.00 0.00 0.00 2.66
50 51 5.870978 CCACTTGATAAAAATCAAAGCCCAG 59.129 40.000 2.74 0.00 39.73 4.45
82 83 4.649692 CCATATCATCAGGCTTGCTAAGT 58.350 43.478 0.00 0.00 0.00 2.24
100 101 3.840666 GACCTCCTCCTAATGATGCCATA 59.159 47.826 0.00 0.00 31.59 2.74
115 116 2.093106 CGTTAGCTACAGTGACCTCCT 58.907 52.381 0.00 0.00 0.00 3.69
119 120 3.057736 TCAAGTCGTTAGCTACAGTGACC 60.058 47.826 0.00 0.00 0.00 4.02
135 136 7.331791 AGGAAGATTATGTAACACCTCAAGTC 58.668 38.462 0.00 0.00 0.00 3.01
204 205 6.818644 GTGAGCTTGACTGAACTAATGGATAA 59.181 38.462 0.00 0.00 0.00 1.75
223 224 0.179045 GTGTGGACTTGTGGTGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
266 269 3.006323 ACATAGCCTATTCTTCTCGCCAG 59.994 47.826 0.00 0.00 0.00 4.85
272 275 5.046304 ACACACACACATAGCCTATTCTTCT 60.046 40.000 0.00 0.00 0.00 2.85
274 277 4.937620 CACACACACACATAGCCTATTCTT 59.062 41.667 0.00 0.00 0.00 2.52
286 289 3.056465 TCTCTAACACACACACACACACA 60.056 43.478 0.00 0.00 0.00 3.72
287 290 3.517602 TCTCTAACACACACACACACAC 58.482 45.455 0.00 0.00 0.00 3.82
288 291 3.445805 TCTCTCTAACACACACACACACA 59.554 43.478 0.00 0.00 0.00 3.72
289 292 4.041740 TCTCTCTAACACACACACACAC 57.958 45.455 0.00 0.00 0.00 3.82
290 293 3.068165 CCTCTCTCTAACACACACACACA 59.932 47.826 0.00 0.00 0.00 3.72
291 294 3.553096 CCCTCTCTCTAACACACACACAC 60.553 52.174 0.00 0.00 0.00 3.82
312 315 3.545703 CTCTTCCTCACTCTCTCTCTCC 58.454 54.545 0.00 0.00 0.00 3.71
349 360 4.038271 ACCATCAAATCCTCACACACAT 57.962 40.909 0.00 0.00 0.00 3.21
377 388 9.383519 AGTTCAATATTACGACATTGATGACTT 57.616 29.630 0.00 0.00 40.03 3.01
378 389 8.948631 AGTTCAATATTACGACATTGATGACT 57.051 30.769 0.00 0.00 40.03 3.41
379 390 9.035607 AGAGTTCAATATTACGACATTGATGAC 57.964 33.333 0.00 0.00 40.03 3.06
380 391 9.599866 AAGAGTTCAATATTACGACATTGATGA 57.400 29.630 0.00 0.00 40.03 2.92
473 484 2.467880 ACATAGTCCCACCTCGATTGT 58.532 47.619 0.00 0.00 0.00 2.71
575 602 0.813184 TGTCTCCAATCCGTCCGTAC 59.187 55.000 0.00 0.00 0.00 3.67
627 654 6.793203 CCGTAATTTCTTTTCGTCAATTTCGA 59.207 34.615 0.00 0.00 33.66 3.71
641 668 3.756963 GCTTCTTCCCACCGTAATTTCTT 59.243 43.478 0.00 0.00 0.00 2.52
643 670 3.078837 TGCTTCTTCCCACCGTAATTTC 58.921 45.455 0.00 0.00 0.00 2.17
709 736 9.691362 GTTTCTGAAATTGCCTTTGACTATTAA 57.309 29.630 6.06 0.00 0.00 1.40
710 737 8.303876 GGTTTCTGAAATTGCCTTTGACTATTA 58.696 33.333 6.06 0.00 0.00 0.98
711 738 7.154656 GGTTTCTGAAATTGCCTTTGACTATT 58.845 34.615 6.06 0.00 0.00 1.73
712 739 6.295292 GGGTTTCTGAAATTGCCTTTGACTAT 60.295 38.462 6.06 0.00 0.00 2.12
713 740 5.010617 GGGTTTCTGAAATTGCCTTTGACTA 59.989 40.000 6.06 0.00 0.00 2.59
714 741 4.202253 GGGTTTCTGAAATTGCCTTTGACT 60.202 41.667 6.06 0.00 0.00 3.41
715 742 4.058124 GGGTTTCTGAAATTGCCTTTGAC 58.942 43.478 6.06 0.00 0.00 3.18
716 743 3.966665 AGGGTTTCTGAAATTGCCTTTGA 59.033 39.130 6.06 0.00 0.00 2.69
717 744 4.341366 AGGGTTTCTGAAATTGCCTTTG 57.659 40.909 6.06 0.00 0.00 2.77
718 745 5.372343 AAAGGGTTTCTGAAATTGCCTTT 57.628 34.783 6.06 3.32 0.00 3.11
719 746 6.686484 ATAAAGGGTTTCTGAAATTGCCTT 57.314 33.333 6.06 0.00 0.00 4.35
720 747 6.154534 GGTATAAAGGGTTTCTGAAATTGCCT 59.845 38.462 6.06 0.00 0.00 4.75
721 748 6.338146 GGTATAAAGGGTTTCTGAAATTGCC 58.662 40.000 6.06 3.11 0.00 4.52
722 749 6.033966 CGGTATAAAGGGTTTCTGAAATTGC 58.966 40.000 6.06 0.00 0.00 3.56
723 750 7.153217 ACGGTATAAAGGGTTTCTGAAATTG 57.847 36.000 6.06 0.00 0.00 2.32
739 766 9.763837 CCCTCCATCCATATATATACGGTATAA 57.236 37.037 11.60 3.02 0.00 0.98
740 767 9.131027 TCCCTCCATCCATATATATACGGTATA 57.869 37.037 10.11 10.11 0.00 1.47
741 768 8.008104 TCCCTCCATCCATATATATACGGTAT 57.992 38.462 4.83 5.87 0.00 2.73
742 769 7.074623 ACTCCCTCCATCCATATATATACGGTA 59.925 40.741 4.83 0.00 0.00 4.02
743 770 6.125860 ACTCCCTCCATCCATATATATACGGT 60.126 42.308 4.83 0.00 0.00 4.83
744 771 6.315714 ACTCCCTCCATCCATATATATACGG 58.684 44.000 0.00 0.00 0.00 4.02
745 772 9.179909 GATACTCCCTCCATCCATATATATACG 57.820 40.741 0.00 0.00 0.00 3.06
748 775 8.112822 CGAGATACTCCCTCCATCCATATATAT 58.887 40.741 0.00 0.00 0.00 0.86
749 776 7.073853 ACGAGATACTCCCTCCATCCATATATA 59.926 40.741 0.00 0.00 0.00 0.86
750 777 6.126038 ACGAGATACTCCCTCCATCCATATAT 60.126 42.308 0.00 0.00 0.00 0.86
751 778 5.193930 ACGAGATACTCCCTCCATCCATATA 59.806 44.000 0.00 0.00 0.00 0.86
752 779 4.017037 ACGAGATACTCCCTCCATCCATAT 60.017 45.833 0.00 0.00 0.00 1.78
753 780 3.333980 ACGAGATACTCCCTCCATCCATA 59.666 47.826 0.00 0.00 0.00 2.74
754 781 2.110899 ACGAGATACTCCCTCCATCCAT 59.889 50.000 0.00 0.00 0.00 3.41
755 782 1.499438 ACGAGATACTCCCTCCATCCA 59.501 52.381 0.00 0.00 0.00 3.41
756 783 1.889829 CACGAGATACTCCCTCCATCC 59.110 57.143 0.00 0.00 0.00 3.51
757 784 2.294791 CACACGAGATACTCCCTCCATC 59.705 54.545 0.00 0.00 0.00 3.51
758 785 2.091830 TCACACGAGATACTCCCTCCAT 60.092 50.000 0.00 0.00 0.00 3.41
759 786 1.283905 TCACACGAGATACTCCCTCCA 59.716 52.381 0.00 0.00 0.00 3.86
760 787 2.054232 TCACACGAGATACTCCCTCC 57.946 55.000 0.00 0.00 0.00 4.30
761 788 2.099427 GGTTCACACGAGATACTCCCTC 59.901 54.545 0.00 0.00 0.00 4.30
762 789 2.100989 GGTTCACACGAGATACTCCCT 58.899 52.381 0.00 0.00 0.00 4.20
763 790 2.099427 GAGGTTCACACGAGATACTCCC 59.901 54.545 0.00 0.00 0.00 4.30
764 791 2.753452 TGAGGTTCACACGAGATACTCC 59.247 50.000 0.00 0.00 0.00 3.85
765 792 4.436242 TTGAGGTTCACACGAGATACTC 57.564 45.455 0.00 0.00 0.00 2.59
766 793 4.557205 GTTTGAGGTTCACACGAGATACT 58.443 43.478 0.00 0.00 0.00 2.12
767 794 3.678548 GGTTTGAGGTTCACACGAGATAC 59.321 47.826 0.00 0.00 28.26 2.24
774 801 1.676006 CCTGTGGTTTGAGGTTCACAC 59.324 52.381 0.00 0.00 35.52 3.82
776 803 2.341846 TCCTGTGGTTTGAGGTTCAC 57.658 50.000 0.00 0.00 0.00 3.18
793 820 1.262683 GCTAGAGATGCGTGCATTTCC 59.737 52.381 18.45 7.57 38.02 3.13
890 917 1.073319 TGGGAGGAAAGGGTGTGGA 60.073 57.895 0.00 0.00 0.00 4.02
907 934 6.317391 GTCCAGGAGATTATTTTCTTGAGGTG 59.683 42.308 0.00 0.00 0.00 4.00
935 962 1.141053 GGTGAGGTTCTGTTGGTGTCT 59.859 52.381 0.00 0.00 0.00 3.41
1032 1061 2.552155 GGACAATGTGGTAGTGCTGGAA 60.552 50.000 0.00 0.00 0.00 3.53
1098 1127 2.507102 CGCTTGTCGACGCCATCT 60.507 61.111 11.62 0.00 41.67 2.90
1324 1353 4.135153 CTCCTCCGTGGTCAGCCG 62.135 72.222 0.00 0.00 37.67 5.52
1392 1421 0.176680 ACGACATGGTCTCCAGCATC 59.823 55.000 0.00 0.00 38.76 3.91
1634 1664 1.664016 GCACGGCAACTTCATCACAAG 60.664 52.381 0.00 0.00 0.00 3.16
1637 1667 0.110056 CTGCACGGCAACTTCATCAC 60.110 55.000 0.35 0.00 38.41 3.06
1765 1795 5.710513 TTCCTAGACTTACAAACGCAGTA 57.289 39.130 0.00 0.00 45.00 2.74
1845 1875 5.538813 AGCAACATGGCAATTCATATCATCT 59.461 36.000 0.00 0.00 35.83 2.90
1897 1928 9.517868 TTTTATGGAGTTATTAAGGACCGAAAA 57.482 29.630 0.00 0.00 0.00 2.29
1907 1938 6.831868 GCCTCCCACTTTTATGGAGTTATTAA 59.168 38.462 0.00 0.00 43.42 1.40
1934 1965 2.694065 CGTCATCGCCATGTGGAAT 58.306 52.632 2.55 0.00 37.39 3.01
1955 2027 1.792118 GACGGCAAACCAACCAGGAC 61.792 60.000 0.00 0.00 41.22 3.85
1991 2065 7.211573 TGAAGTTGGACGTATGACTTTTTCTA 58.788 34.615 10.17 0.00 32.85 2.10
1993 2067 6.295039 TGAAGTTGGACGTATGACTTTTTC 57.705 37.500 10.17 1.52 32.85 2.29
1994 2068 6.877611 ATGAAGTTGGACGTATGACTTTTT 57.122 33.333 10.17 1.45 32.85 1.94
2000 2074 9.692749 GATTTATCTATGAAGTTGGACGTATGA 57.307 33.333 0.00 0.00 0.00 2.15
2015 2089 7.756395 ACTTTGCCTCATGGATTTATCTATG 57.244 36.000 9.15 9.15 44.29 2.23
2025 2099 3.627395 ATTCGTACTTTGCCTCATGGA 57.373 42.857 0.00 0.00 34.57 3.41
2030 2104 4.181578 TGCTCTAATTCGTACTTTGCCTC 58.818 43.478 0.00 0.00 0.00 4.70
2036 2110 6.694447 TGGTTACTTGCTCTAATTCGTACTT 58.306 36.000 0.00 0.00 0.00 2.24
2045 2119 6.376018 ACTGTTTTGTTGGTTACTTGCTCTAA 59.624 34.615 0.00 0.00 0.00 2.10
2046 2120 5.883673 ACTGTTTTGTTGGTTACTTGCTCTA 59.116 36.000 0.00 0.00 0.00 2.43
2055 2129 5.991861 TCTGGTCTACTGTTTTGTTGGTTA 58.008 37.500 0.00 0.00 0.00 2.85
2063 2137 6.351117 GCCTACATACTCTGGTCTACTGTTTT 60.351 42.308 0.00 0.00 0.00 2.43
2072 2146 2.500098 TGTTGGCCTACATACTCTGGTC 59.500 50.000 16.47 0.00 0.00 4.02
2077 2151 3.629142 AGGTTGTTGGCCTACATACTC 57.371 47.619 20.85 13.80 33.97 2.59
2083 2157 1.810755 GTGCTAAGGTTGTTGGCCTAC 59.189 52.381 10.70 10.70 34.81 3.18
2084 2158 1.609580 CGTGCTAAGGTTGTTGGCCTA 60.610 52.381 3.32 0.00 34.81 3.93
2098 2172 2.048222 GTGCTGACCTGCGTGCTA 60.048 61.111 0.00 0.00 35.36 3.49
2099 2173 4.240103 TGTGCTGACCTGCGTGCT 62.240 61.111 0.00 0.00 35.36 4.40
2108 2182 0.450583 CATGCCATGACTGTGCTGAC 59.549 55.000 0.00 0.00 0.00 3.51
2109 2183 1.310216 GCATGCCATGACTGTGCTGA 61.310 55.000 9.33 0.00 33.25 4.26
2112 2186 2.101575 CGCATGCCATGACTGTGC 59.898 61.111 13.15 0.00 0.00 4.57
2170 2244 2.632996 TGATGGTCGGGCTAATTCCTAG 59.367 50.000 0.00 0.00 0.00 3.02
2178 2252 1.507140 AAATCCTGATGGTCGGGCTA 58.493 50.000 0.00 0.00 42.73 3.93
2208 2282 1.226156 CGAGCTTCTGACGTCTCCG 60.226 63.158 17.92 5.46 40.83 4.63
2231 2305 0.463295 CTGGAGGTGCTGATTGCGAT 60.463 55.000 0.00 0.00 46.63 4.58
2234 2308 1.375098 GCTCTGGAGGTGCTGATTGC 61.375 60.000 0.00 0.00 43.25 3.56
2247 2321 2.503061 CCGACTGGGATGCTCTGG 59.497 66.667 0.00 0.00 38.47 3.86
2260 2334 2.695359 TCATTGACTAAGGTTGCCGAC 58.305 47.619 0.00 0.00 0.00 4.79
2307 2381 8.220559 ACAAGCCCACTGATTGTCTATTTATAT 58.779 33.333 0.00 0.00 31.72 0.86
2309 2383 6.426587 ACAAGCCCACTGATTGTCTATTTAT 58.573 36.000 0.00 0.00 31.72 1.40
2320 2394 3.327757 TGTTCTCTAACAAGCCCACTGAT 59.672 43.478 0.00 0.00 42.60 2.90
2336 2410 6.690194 ATTTACCATTGAGCATCTGTTCTC 57.310 37.500 0.00 0.00 34.92 2.87
2391 2465 1.382420 TGGTTGGGGTTTGCTGCTT 60.382 52.632 0.00 0.00 0.00 3.91
2394 2468 1.341080 ATTCTGGTTGGGGTTTGCTG 58.659 50.000 0.00 0.00 0.00 4.41
2433 2507 1.185618 TGTGCTTACGTCTGGGCTCT 61.186 55.000 0.00 0.00 0.00 4.09
2443 2517 1.623359 GAGAGCTCTGTGTGCTTACG 58.377 55.000 23.91 0.00 41.30 3.18
2484 2559 1.944024 CTGCTGGTTTTAACACCGACA 59.056 47.619 6.32 5.96 40.09 4.35
2485 2560 2.032290 GTCTGCTGGTTTTAACACCGAC 60.032 50.000 6.32 4.01 40.09 4.79
2486 2561 2.215196 GTCTGCTGGTTTTAACACCGA 58.785 47.619 6.32 0.00 40.09 4.69
2487 2562 1.265905 GGTCTGCTGGTTTTAACACCG 59.734 52.381 6.32 2.90 40.09 4.94
2488 2563 2.552743 GAGGTCTGCTGGTTTTAACACC 59.447 50.000 3.69 3.69 37.34 4.16
2489 2564 2.223377 CGAGGTCTGCTGGTTTTAACAC 59.777 50.000 0.00 0.00 0.00 3.32
2490 2565 2.489971 CGAGGTCTGCTGGTTTTAACA 58.510 47.619 0.00 0.00 0.00 2.41
2491 2566 1.804748 CCGAGGTCTGCTGGTTTTAAC 59.195 52.381 0.00 0.00 0.00 2.01
2492 2567 1.271163 CCCGAGGTCTGCTGGTTTTAA 60.271 52.381 0.00 0.00 0.00 1.52
2493 2568 0.323629 CCCGAGGTCTGCTGGTTTTA 59.676 55.000 0.00 0.00 0.00 1.52
2494 2569 1.073199 CCCGAGGTCTGCTGGTTTT 59.927 57.895 0.00 0.00 0.00 2.43
2495 2570 2.147387 ACCCGAGGTCTGCTGGTTT 61.147 57.895 0.00 0.00 0.00 3.27
2496 2571 2.526873 ACCCGAGGTCTGCTGGTT 60.527 61.111 0.00 0.00 0.00 3.67
2508 2583 1.679977 CCTGTTACCCTCGACCCGA 60.680 63.158 0.00 0.00 0.00 5.14
2509 2584 1.252904 TTCCTGTTACCCTCGACCCG 61.253 60.000 0.00 0.00 0.00 5.28
2510 2585 0.248565 GTTCCTGTTACCCTCGACCC 59.751 60.000 0.00 0.00 0.00 4.46
2511 2586 0.108945 CGTTCCTGTTACCCTCGACC 60.109 60.000 0.00 0.00 0.00 4.79
2512 2587 0.883833 TCGTTCCTGTTACCCTCGAC 59.116 55.000 0.00 0.00 0.00 4.20
2513 2588 1.542915 CTTCGTTCCTGTTACCCTCGA 59.457 52.381 0.00 0.00 0.00 4.04
2514 2589 1.403780 CCTTCGTTCCTGTTACCCTCG 60.404 57.143 0.00 0.00 0.00 4.63
2515 2590 1.897802 TCCTTCGTTCCTGTTACCCTC 59.102 52.381 0.00 0.00 0.00 4.30
2516 2591 1.900486 CTCCTTCGTTCCTGTTACCCT 59.100 52.381 0.00 0.00 0.00 4.34
2517 2592 1.897802 TCTCCTTCGTTCCTGTTACCC 59.102 52.381 0.00 0.00 0.00 3.69
2518 2593 3.889520 ATCTCCTTCGTTCCTGTTACC 57.110 47.619 0.00 0.00 0.00 2.85
2519 2594 5.105837 ACACTATCTCCTTCGTTCCTGTTAC 60.106 44.000 0.00 0.00 0.00 2.50
2520 2595 5.014858 ACACTATCTCCTTCGTTCCTGTTA 58.985 41.667 0.00 0.00 0.00 2.41
2521 2596 3.833070 ACACTATCTCCTTCGTTCCTGTT 59.167 43.478 0.00 0.00 0.00 3.16
2522 2597 3.432378 ACACTATCTCCTTCGTTCCTGT 58.568 45.455 0.00 0.00 0.00 4.00
2523 2598 4.457834 AACACTATCTCCTTCGTTCCTG 57.542 45.455 0.00 0.00 0.00 3.86
2524 2599 5.715753 AGTAAACACTATCTCCTTCGTTCCT 59.284 40.000 0.00 0.00 0.00 3.36
2525 2600 5.963594 AGTAAACACTATCTCCTTCGTTCC 58.036 41.667 0.00 0.00 0.00 3.62
2526 2601 7.701501 CCTAAGTAAACACTATCTCCTTCGTTC 59.298 40.741 0.00 0.00 0.00 3.95
2527 2602 7.178097 ACCTAAGTAAACACTATCTCCTTCGTT 59.822 37.037 0.00 0.00 0.00 3.85
2528 2603 6.662663 ACCTAAGTAAACACTATCTCCTTCGT 59.337 38.462 0.00 0.00 0.00 3.85
2529 2604 7.098074 ACCTAAGTAAACACTATCTCCTTCG 57.902 40.000 0.00 0.00 0.00 3.79
2530 2605 7.701501 CGAACCTAAGTAAACACTATCTCCTTC 59.298 40.741 0.00 0.00 0.00 3.46
2531 2606 7.363617 CCGAACCTAAGTAAACACTATCTCCTT 60.364 40.741 0.00 0.00 0.00 3.36
2532 2607 6.096564 CCGAACCTAAGTAAACACTATCTCCT 59.903 42.308 0.00 0.00 0.00 3.69
2533 2608 6.096001 TCCGAACCTAAGTAAACACTATCTCC 59.904 42.308 0.00 0.00 0.00 3.71
2534 2609 6.971756 GTCCGAACCTAAGTAAACACTATCTC 59.028 42.308 0.00 0.00 0.00 2.75
2535 2610 6.127507 GGTCCGAACCTAAGTAAACACTATCT 60.128 42.308 0.00 0.00 42.80 1.98
2536 2611 6.038985 GGTCCGAACCTAAGTAAACACTATC 58.961 44.000 0.00 0.00 42.80 2.08
2537 2612 5.105187 GGGTCCGAACCTAAGTAAACACTAT 60.105 44.000 0.00 0.00 45.66 2.12
2538 2613 4.220602 GGGTCCGAACCTAAGTAAACACTA 59.779 45.833 0.00 0.00 45.66 2.74
2539 2614 3.007290 GGGTCCGAACCTAAGTAAACACT 59.993 47.826 0.00 0.00 45.66 3.55
2540 2615 3.007290 AGGGTCCGAACCTAAGTAAACAC 59.993 47.826 2.00 0.00 45.66 3.32
2541 2616 3.242011 AGGGTCCGAACCTAAGTAAACA 58.758 45.455 2.00 0.00 45.66 2.83
2542 2617 3.513119 AGAGGGTCCGAACCTAAGTAAAC 59.487 47.826 4.49 0.00 45.66 2.01
2543 2618 3.782992 AGAGGGTCCGAACCTAAGTAAA 58.217 45.455 4.49 0.00 45.66 2.01
2544 2619 3.463048 AGAGGGTCCGAACCTAAGTAA 57.537 47.619 4.49 0.00 45.66 2.24
2545 2620 3.094572 CAAGAGGGTCCGAACCTAAGTA 58.905 50.000 4.49 0.00 45.66 2.24
2546 2621 1.900486 CAAGAGGGTCCGAACCTAAGT 59.100 52.381 4.49 0.00 45.66 2.24
2547 2622 1.207329 CCAAGAGGGTCCGAACCTAAG 59.793 57.143 4.49 0.00 45.66 2.18
2548 2623 1.272807 CCAAGAGGGTCCGAACCTAA 58.727 55.000 4.49 0.00 45.66 2.69
2549 2624 2.986492 CCAAGAGGGTCCGAACCTA 58.014 57.895 4.49 0.00 45.66 3.08
2550 2625 3.807368 CCAAGAGGGTCCGAACCT 58.193 61.111 4.04 4.04 45.66 3.50
2561 2636 3.250040 CACGGTTTTACCTCAACCAAGAG 59.750 47.826 2.90 0.00 43.59 2.85
2562 2637 3.207778 CACGGTTTTACCTCAACCAAGA 58.792 45.455 2.90 0.00 43.59 3.02
2563 2638 2.287368 GCACGGTTTTACCTCAACCAAG 60.287 50.000 2.90 0.00 43.59 3.61
2564 2639 1.677052 GCACGGTTTTACCTCAACCAA 59.323 47.619 2.90 0.00 43.59 3.67
2565 2640 1.310904 GCACGGTTTTACCTCAACCA 58.689 50.000 2.90 0.00 43.59 3.67
2566 2641 0.236449 CGCACGGTTTTACCTCAACC 59.764 55.000 0.00 0.00 40.46 3.77
2567 2642 0.939419 ACGCACGGTTTTACCTCAAC 59.061 50.000 0.00 0.00 35.66 3.18
2568 2643 1.219646 GACGCACGGTTTTACCTCAA 58.780 50.000 0.00 0.00 35.66 3.02
2569 2644 0.600782 GGACGCACGGTTTTACCTCA 60.601 55.000 0.00 0.00 35.66 3.86
2570 2645 0.320160 AGGACGCACGGTTTTACCTC 60.320 55.000 0.00 0.00 35.66 3.85
2571 2646 0.601841 CAGGACGCACGGTTTTACCT 60.602 55.000 0.00 0.00 35.66 3.08
2572 2647 1.864176 CAGGACGCACGGTTTTACC 59.136 57.895 0.00 0.00 34.05 2.85
2573 2648 1.205820 GCAGGACGCACGGTTTTAC 59.794 57.895 0.00 0.00 41.79 2.01
2574 2649 0.947180 GAGCAGGACGCACGGTTTTA 60.947 55.000 0.00 0.00 46.13 1.52
2575 2650 2.203153 AGCAGGACGCACGGTTTT 60.203 55.556 0.00 0.00 46.13 2.43
2576 2651 2.660258 AAGAGCAGGACGCACGGTTT 62.660 55.000 0.00 0.00 46.13 3.27
2577 2652 3.165160 AAGAGCAGGACGCACGGTT 62.165 57.895 0.00 0.00 46.13 4.44
2578 2653 3.616721 AAGAGCAGGACGCACGGT 61.617 61.111 0.00 0.00 46.13 4.83
2579 2654 3.114616 CAAGAGCAGGACGCACGG 61.115 66.667 0.00 0.00 46.13 4.94
2580 2655 1.498865 AAACAAGAGCAGGACGCACG 61.499 55.000 0.00 0.00 46.13 5.34
2581 2656 1.508632 TAAACAAGAGCAGGACGCAC 58.491 50.000 0.00 0.00 46.13 5.34
2582 2657 2.472695 ATAAACAAGAGCAGGACGCA 57.527 45.000 0.00 0.00 46.13 5.24
2583 2658 4.260784 CCAATATAAACAAGAGCAGGACGC 60.261 45.833 0.00 0.00 42.91 5.19
2584 2659 4.876107 ACCAATATAAACAAGAGCAGGACG 59.124 41.667 0.00 0.00 0.00 4.79
2585 2660 5.880332 TCACCAATATAAACAAGAGCAGGAC 59.120 40.000 0.00 0.00 0.00 3.85
2586 2661 6.061022 TCACCAATATAAACAAGAGCAGGA 57.939 37.500 0.00 0.00 0.00 3.86
2587 2662 6.599244 TCTTCACCAATATAAACAAGAGCAGG 59.401 38.462 0.00 0.00 0.00 4.85
2588 2663 7.615582 TCTTCACCAATATAAACAAGAGCAG 57.384 36.000 0.00 0.00 0.00 4.24
2589 2664 7.611467 ACATCTTCACCAATATAAACAAGAGCA 59.389 33.333 0.00 0.00 0.00 4.26
2590 2665 7.989826 ACATCTTCACCAATATAAACAAGAGC 58.010 34.615 0.00 0.00 0.00 4.09
2595 2670 9.040939 CGTGATACATCTTCACCAATATAAACA 57.959 33.333 0.00 0.00 40.29 2.83
2596 2671 9.042008 ACGTGATACATCTTCACCAATATAAAC 57.958 33.333 0.00 0.00 40.29 2.01
2598 2673 9.687210 GTACGTGATACATCTTCACCAATATAA 57.313 33.333 0.00 0.00 40.29 0.98
2599 2674 8.852135 TGTACGTGATACATCTTCACCAATATA 58.148 33.333 0.00 0.00 38.95 0.86
2600 2675 7.722363 TGTACGTGATACATCTTCACCAATAT 58.278 34.615 0.00 0.00 38.95 1.28
2601 2676 7.067737 TCTGTACGTGATACATCTTCACCAATA 59.932 37.037 0.00 0.00 43.01 1.90
2602 2677 5.972935 TGTACGTGATACATCTTCACCAAT 58.027 37.500 0.00 0.00 38.95 3.16
2603 2678 5.184287 TCTGTACGTGATACATCTTCACCAA 59.816 40.000 0.00 0.00 43.01 3.67
2604 2679 4.703093 TCTGTACGTGATACATCTTCACCA 59.297 41.667 0.00 0.00 43.01 4.17
2605 2680 5.163642 ACTCTGTACGTGATACATCTTCACC 60.164 44.000 0.00 0.00 43.01 4.02
2606 2681 5.881447 ACTCTGTACGTGATACATCTTCAC 58.119 41.667 0.00 0.00 43.01 3.18
2607 2682 6.150474 TCAACTCTGTACGTGATACATCTTCA 59.850 38.462 0.00 0.00 43.01 3.02
2608 2683 6.469595 GTCAACTCTGTACGTGATACATCTTC 59.530 42.308 0.00 0.00 43.01 2.87
2609 2684 6.323266 GTCAACTCTGTACGTGATACATCTT 58.677 40.000 0.00 0.00 43.01 2.40
2610 2685 5.163642 GGTCAACTCTGTACGTGATACATCT 60.164 44.000 0.00 0.00 43.01 2.90
2611 2686 5.035443 GGTCAACTCTGTACGTGATACATC 58.965 45.833 0.00 0.00 43.01 3.06
2612 2687 4.705507 AGGTCAACTCTGTACGTGATACAT 59.294 41.667 0.00 0.00 43.01 2.29
2613 2688 4.077108 AGGTCAACTCTGTACGTGATACA 58.923 43.478 0.00 0.00 41.71 2.29
2614 2689 4.698583 AGGTCAACTCTGTACGTGATAC 57.301 45.455 0.00 0.00 0.00 2.24
2615 2690 4.637534 GGTAGGTCAACTCTGTACGTGATA 59.362 45.833 0.00 0.00 0.00 2.15
2616 2691 3.442977 GGTAGGTCAACTCTGTACGTGAT 59.557 47.826 0.00 0.00 0.00 3.06
2617 2692 2.816087 GGTAGGTCAACTCTGTACGTGA 59.184 50.000 0.00 0.00 0.00 4.35
2618 2693 2.818432 AGGTAGGTCAACTCTGTACGTG 59.182 50.000 0.00 0.00 0.00 4.49
2619 2694 3.080319 GAGGTAGGTCAACTCTGTACGT 58.920 50.000 0.00 0.00 0.00 3.57
2620 2695 3.345414 AGAGGTAGGTCAACTCTGTACG 58.655 50.000 0.00 0.00 39.92 3.67
2625 2700 1.203187 TGGCAGAGGTAGGTCAACTCT 60.203 52.381 0.00 0.00 42.00 3.24
2626 2701 1.267121 TGGCAGAGGTAGGTCAACTC 58.733 55.000 0.00 0.00 0.00 3.01
2627 2702 1.556911 CATGGCAGAGGTAGGTCAACT 59.443 52.381 0.00 0.00 0.00 3.16
2628 2703 1.555075 TCATGGCAGAGGTAGGTCAAC 59.445 52.381 0.00 0.00 0.00 3.18
2629 2704 1.951209 TCATGGCAGAGGTAGGTCAA 58.049 50.000 0.00 0.00 0.00 3.18
2630 2705 1.555075 GTTCATGGCAGAGGTAGGTCA 59.445 52.381 0.00 0.00 0.00 4.02
2631 2706 1.471676 CGTTCATGGCAGAGGTAGGTC 60.472 57.143 0.00 0.00 0.00 3.85
2632 2707 0.537188 CGTTCATGGCAGAGGTAGGT 59.463 55.000 0.00 0.00 0.00 3.08
2633 2708 0.179073 CCGTTCATGGCAGAGGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
2634 2709 3.369381 CCGTTCATGGCAGAGGTAG 57.631 57.895 0.00 0.00 0.00 3.18
2643 2718 1.942657 CATTCACCTAGCCGTTCATGG 59.057 52.381 0.00 0.00 0.00 3.66
2644 2719 2.905075 TCATTCACCTAGCCGTTCATG 58.095 47.619 0.00 0.00 0.00 3.07
2645 2720 3.845781 ATCATTCACCTAGCCGTTCAT 57.154 42.857 0.00 0.00 0.00 2.57
2646 2721 3.627395 AATCATTCACCTAGCCGTTCA 57.373 42.857 0.00 0.00 0.00 3.18
2647 2722 4.662145 CAAAATCATTCACCTAGCCGTTC 58.338 43.478 0.00 0.00 0.00 3.95
2648 2723 3.119495 GCAAAATCATTCACCTAGCCGTT 60.119 43.478 0.00 0.00 0.00 4.44
2649 2724 2.423538 GCAAAATCATTCACCTAGCCGT 59.576 45.455 0.00 0.00 0.00 5.68
2650 2725 2.423185 TGCAAAATCATTCACCTAGCCG 59.577 45.455 0.00 0.00 0.00 5.52
2651 2726 4.660789 ATGCAAAATCATTCACCTAGCC 57.339 40.909 0.00 0.00 0.00 3.93
2652 2727 5.653507 TCAATGCAAAATCATTCACCTAGC 58.346 37.500 0.00 0.00 34.68 3.42
2653 2728 7.262772 ACATCAATGCAAAATCATTCACCTAG 58.737 34.615 0.00 0.00 34.68 3.02
2654 2729 7.172868 ACATCAATGCAAAATCATTCACCTA 57.827 32.000 0.00 0.00 34.68 3.08
2655 2730 6.045072 ACATCAATGCAAAATCATTCACCT 57.955 33.333 0.00 0.00 34.68 4.00
2656 2731 5.292589 GGACATCAATGCAAAATCATTCACC 59.707 40.000 0.00 0.00 34.68 4.02
2657 2732 5.292589 GGGACATCAATGCAAAATCATTCAC 59.707 40.000 0.00 0.00 34.68 3.18
2658 2733 5.421277 GGGACATCAATGCAAAATCATTCA 58.579 37.500 0.00 0.00 34.68 2.57
2659 2734 4.812626 GGGGACATCAATGCAAAATCATTC 59.187 41.667 0.00 0.00 34.68 2.67
2660 2735 4.472108 AGGGGACATCAATGCAAAATCATT 59.528 37.500 0.00 0.00 37.16 2.57
2661 2736 4.035112 AGGGGACATCAATGCAAAATCAT 58.965 39.130 0.00 0.00 0.00 2.45
2662 2737 3.443052 AGGGGACATCAATGCAAAATCA 58.557 40.909 0.00 0.00 0.00 2.57
2663 2738 3.703052 AGAGGGGACATCAATGCAAAATC 59.297 43.478 0.00 0.00 0.00 2.17
2664 2739 3.716431 AGAGGGGACATCAATGCAAAAT 58.284 40.909 0.00 0.00 0.00 1.82
2665 2740 3.173953 AGAGGGGACATCAATGCAAAA 57.826 42.857 0.00 0.00 0.00 2.44
2666 2741 2.905415 AGAGGGGACATCAATGCAAA 57.095 45.000 0.00 0.00 0.00 3.68
2667 2742 2.419990 CGTAGAGGGGACATCAATGCAA 60.420 50.000 0.00 0.00 0.00 4.08
2668 2743 1.138859 CGTAGAGGGGACATCAATGCA 59.861 52.381 0.00 0.00 0.00 3.96
2669 2744 1.541233 CCGTAGAGGGGACATCAATGC 60.541 57.143 0.00 0.00 35.97 3.56
2670 2745 2.533266 CCGTAGAGGGGACATCAATG 57.467 55.000 0.00 0.00 35.97 2.82
2681 2756 3.306780 CCATATGGTTTAGCCCGTAGAGG 60.307 52.174 14.09 0.00 40.63 3.69
2682 2757 3.864921 GCCATATGGTTTAGCCCGTAGAG 60.865 52.174 22.79 0.00 37.57 2.43
2683 2758 2.038033 GCCATATGGTTTAGCCCGTAGA 59.962 50.000 22.79 0.00 37.57 2.59
2684 2759 2.038557 AGCCATATGGTTTAGCCCGTAG 59.961 50.000 22.79 0.00 37.57 3.51
2685 2760 2.051692 AGCCATATGGTTTAGCCCGTA 58.948 47.619 22.79 0.00 37.57 4.02
2686 2761 0.843984 AGCCATATGGTTTAGCCCGT 59.156 50.000 22.79 0.00 37.57 5.28
2687 2762 1.981256 AAGCCATATGGTTTAGCCCG 58.019 50.000 21.10 0.00 36.84 6.13
2688 2763 5.414765 GTGTATAAGCCATATGGTTTAGCCC 59.585 44.000 28.15 20.16 42.71 5.19
2689 2764 6.001460 TGTGTATAAGCCATATGGTTTAGCC 58.999 40.000 28.15 21.99 42.71 3.93
2690 2765 6.485313 TGTGTGTATAAGCCATATGGTTTAGC 59.515 38.462 28.15 23.47 42.71 3.09
2691 2766 7.041372 GGTGTGTGTATAAGCCATATGGTTTAG 60.041 40.741 28.15 4.65 42.71 1.85
2692 2767 6.768861 GGTGTGTGTATAAGCCATATGGTTTA 59.231 38.462 27.16 27.16 43.41 2.01
2693 2768 5.592688 GGTGTGTGTATAAGCCATATGGTTT 59.407 40.000 24.90 24.90 41.61 3.27
2694 2769 5.130350 GGTGTGTGTATAAGCCATATGGTT 58.870 41.667 22.79 14.79 38.47 3.67
2695 2770 4.165180 TGGTGTGTGTATAAGCCATATGGT 59.835 41.667 22.79 6.86 37.57 3.55
2696 2771 4.713553 TGGTGTGTGTATAAGCCATATGG 58.286 43.478 18.07 18.07 38.53 2.74
2697 2772 5.822519 ACTTGGTGTGTGTATAAGCCATATG 59.177 40.000 0.00 0.00 0.00 1.78
2698 2773 6.001449 ACTTGGTGTGTGTATAAGCCATAT 57.999 37.500 0.00 0.00 0.00 1.78
2699 2774 5.429681 ACTTGGTGTGTGTATAAGCCATA 57.570 39.130 0.00 0.00 0.00 2.74
2700 2775 4.301072 ACTTGGTGTGTGTATAAGCCAT 57.699 40.909 0.00 0.00 0.00 4.40
2701 2776 3.780804 ACTTGGTGTGTGTATAAGCCA 57.219 42.857 0.00 0.00 0.00 4.75
2702 2777 4.189231 CCTACTTGGTGTGTGTATAAGCC 58.811 47.826 0.00 0.00 0.00 4.35
2703 2778 4.189231 CCCTACTTGGTGTGTGTATAAGC 58.811 47.826 0.00 0.00 0.00 3.09
2704 2779 5.416271 ACCCTACTTGGTGTGTGTATAAG 57.584 43.478 0.00 0.00 37.20 1.73
2705 2780 6.899075 AGATACCCTACTTGGTGTGTGTATAA 59.101 38.462 0.00 0.00 39.53 0.98
2706 2781 6.437755 AGATACCCTACTTGGTGTGTGTATA 58.562 40.000 0.00 0.00 39.53 1.47
2707 2782 5.278061 AGATACCCTACTTGGTGTGTGTAT 58.722 41.667 0.00 0.00 39.53 2.29
2708 2783 4.680407 AGATACCCTACTTGGTGTGTGTA 58.320 43.478 0.00 0.00 39.53 2.90
2709 2784 3.517612 AGATACCCTACTTGGTGTGTGT 58.482 45.455 0.00 0.00 39.53 3.72
2710 2785 4.099573 CCTAGATACCCTACTTGGTGTGTG 59.900 50.000 0.00 0.00 39.53 3.82
2711 2786 4.287552 CCTAGATACCCTACTTGGTGTGT 58.712 47.826 0.00 0.00 39.53 3.72
2712 2787 3.641906 CCCTAGATACCCTACTTGGTGTG 59.358 52.174 0.00 0.00 39.53 3.82
2713 2788 3.274153 ACCCTAGATACCCTACTTGGTGT 59.726 47.826 0.00 0.00 39.53 4.16
2714 2789 3.924922 ACCCTAGATACCCTACTTGGTG 58.075 50.000 0.00 0.00 39.53 4.17
2715 2790 4.639019 AACCCTAGATACCCTACTTGGT 57.361 45.455 0.00 0.00 42.62 3.67
2716 2791 5.461327 TGTAACCCTAGATACCCTACTTGG 58.539 45.833 0.00 0.00 0.00 3.61
2717 2792 6.041751 CCTTGTAACCCTAGATACCCTACTTG 59.958 46.154 0.00 0.00 0.00 3.16
2718 2793 6.141790 CCTTGTAACCCTAGATACCCTACTT 58.858 44.000 0.00 0.00 0.00 2.24
2719 2794 5.197395 ACCTTGTAACCCTAGATACCCTACT 59.803 44.000 0.00 0.00 0.00 2.57
2720 2795 5.462240 ACCTTGTAACCCTAGATACCCTAC 58.538 45.833 0.00 0.00 0.00 3.18
2721 2796 5.691167 CGACCTTGTAACCCTAGATACCCTA 60.691 48.000 0.00 0.00 0.00 3.53
2722 2797 4.554683 GACCTTGTAACCCTAGATACCCT 58.445 47.826 0.00 0.00 0.00 4.34
2723 2798 3.320256 CGACCTTGTAACCCTAGATACCC 59.680 52.174 0.00 0.00 0.00 3.69
2724 2799 3.320256 CCGACCTTGTAACCCTAGATACC 59.680 52.174 0.00 0.00 0.00 2.73
2725 2800 3.956848 ACCGACCTTGTAACCCTAGATAC 59.043 47.826 0.00 0.00 0.00 2.24
2726 2801 4.255510 ACCGACCTTGTAACCCTAGATA 57.744 45.455 0.00 0.00 0.00 1.98
2727 2802 3.111741 ACCGACCTTGTAACCCTAGAT 57.888 47.619 0.00 0.00 0.00 1.98
2728 2803 2.610438 ACCGACCTTGTAACCCTAGA 57.390 50.000 0.00 0.00 0.00 2.43
2729 2804 2.428530 GGTACCGACCTTGTAACCCTAG 59.571 54.545 0.00 0.00 43.16 3.02
2730 2805 2.456577 GGTACCGACCTTGTAACCCTA 58.543 52.381 0.00 0.00 43.16 3.53
2731 2806 1.269958 GGTACCGACCTTGTAACCCT 58.730 55.000 0.00 0.00 43.16 4.34
2732 2807 3.840831 GGTACCGACCTTGTAACCC 57.159 57.895 0.00 0.00 43.16 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.