Multiple sequence alignment - TraesCS6B01G227800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G227800 chr6B 100.000 5428 0 0 996 6423 353876594 353871167 0.000000e+00 10024.0
1 TraesCS6B01G227800 chr6B 100.000 707 0 0 1 707 353877589 353876883 0.000000e+00 1306.0
2 TraesCS6B01G227800 chr6B 93.878 49 1 2 5376 5423 707946315 707946362 8.930000e-09 73.1
3 TraesCS6B01G227800 chr6A 93.085 4483 188 58 996 5388 337128361 337132811 0.000000e+00 6449.0
4 TraesCS6B01G227800 chr6A 90.053 563 33 9 143 703 337127781 337128322 0.000000e+00 708.0
5 TraesCS6B01G227800 chr6A 94.118 119 7 0 5430 5548 337132809 337132927 1.420000e-41 182.0
6 TraesCS6B01G227800 chr6A 100.000 40 0 0 5537 5576 337132933 337132972 2.480000e-09 75.0
7 TraesCS6B01G227800 chr6D 96.483 2019 51 7 3371 5388 242626386 242624387 0.000000e+00 3317.0
8 TraesCS6B01G227800 chr6D 91.770 1373 61 20 2001 3333 242627804 242626444 0.000000e+00 1862.0
9 TraesCS6B01G227800 chr6D 93.147 1036 44 10 996 2015 242628843 242627819 0.000000e+00 1495.0
10 TraesCS6B01G227800 chr6D 93.640 566 28 6 143 703 242629443 242628881 0.000000e+00 839.0
11 TraesCS6B01G227800 chr6D 93.671 79 3 1 5430 5506 242624389 242624311 4.070000e-22 117.0
12 TraesCS6B01G227800 chr6D 100.000 31 0 0 5544 5574 242624258 242624228 2.500000e-04 58.4
13 TraesCS6B01G227800 chr4B 97.650 851 18 1 5575 6423 59194896 59195746 0.000000e+00 1459.0
14 TraesCS6B01G227800 chr4B 97.527 849 21 0 5575 6423 12059838 12060686 0.000000e+00 1452.0
15 TraesCS6B01G227800 chr4B 97.527 849 21 0 5575 6423 646662239 646663087 0.000000e+00 1452.0
16 TraesCS6B01G227800 chr4B 97.409 849 21 1 5576 6423 104844548 104845396 0.000000e+00 1445.0
17 TraesCS6B01G227800 chrUn 97.183 852 21 2 5573 6423 38412160 38413009 0.000000e+00 1437.0
18 TraesCS6B01G227800 chrUn 97.183 852 21 2 5573 6423 380878354 380877505 0.000000e+00 1437.0
19 TraesCS6B01G227800 chr7B 97.059 850 23 2 5575 6423 666099183 666098335 0.000000e+00 1430.0
20 TraesCS6B01G227800 chr7B 93.878 49 1 2 5376 5423 495085033 495085080 8.930000e-09 73.1
21 TraesCS6B01G227800 chr7B 97.619 42 0 1 5383 5423 251152441 251152400 3.210000e-08 71.3
22 TraesCS6B01G227800 chr4A 96.835 853 26 1 5572 6423 691023464 691022612 0.000000e+00 1424.0
23 TraesCS6B01G227800 chr2A 96.710 851 25 2 5574 6423 421244167 421245015 0.000000e+00 1413.0
24 TraesCS6B01G227800 chr3B 93.750 48 1 2 5376 5422 7281728 7281682 3.210000e-08 71.3
25 TraesCS6B01G227800 chr3B 93.750 48 1 2 5376 5422 653680651 653680605 3.210000e-08 71.3
26 TraesCS6B01G227800 chr1B 93.478 46 1 2 5376 5420 183212602 183212646 4.160000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G227800 chr6B 353871167 353877589 6422 True 5665.0 10024 100.000000 1 6423 2 chr6B.!!$R1 6422
1 TraesCS6B01G227800 chr6A 337127781 337132972 5191 False 1853.5 6449 94.314000 143 5576 4 chr6A.!!$F1 5433
2 TraesCS6B01G227800 chr6D 242624228 242629443 5215 True 1281.4 3317 94.785167 143 5574 6 chr6D.!!$R1 5431
3 TraesCS6B01G227800 chr4B 59194896 59195746 850 False 1459.0 1459 97.650000 5575 6423 1 chr4B.!!$F2 848
4 TraesCS6B01G227800 chr4B 12059838 12060686 848 False 1452.0 1452 97.527000 5575 6423 1 chr4B.!!$F1 848
5 TraesCS6B01G227800 chr4B 646662239 646663087 848 False 1452.0 1452 97.527000 5575 6423 1 chr4B.!!$F4 848
6 TraesCS6B01G227800 chr4B 104844548 104845396 848 False 1445.0 1445 97.409000 5576 6423 1 chr4B.!!$F3 847
7 TraesCS6B01G227800 chrUn 38412160 38413009 849 False 1437.0 1437 97.183000 5573 6423 1 chrUn.!!$F1 850
8 TraesCS6B01G227800 chrUn 380877505 380878354 849 True 1437.0 1437 97.183000 5573 6423 1 chrUn.!!$R1 850
9 TraesCS6B01G227800 chr7B 666098335 666099183 848 True 1430.0 1430 97.059000 5575 6423 1 chr7B.!!$R2 848
10 TraesCS6B01G227800 chr4A 691022612 691023464 852 True 1424.0 1424 96.835000 5572 6423 1 chr4A.!!$R1 851
11 TraesCS6B01G227800 chr2A 421244167 421245015 848 False 1413.0 1413 96.710000 5574 6423 1 chr2A.!!$F1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.252197 AGTCGGCGGGATTTTAGCTT 59.748 50.0 7.21 0.0 0.00 3.74 F
87 88 0.320374 TCCTCCGCAATCACGTTTCT 59.680 50.0 0.00 0.0 0.00 2.52 F
1278 1289 0.106519 CCTGGCCCCTTCATCGATTT 60.107 55.0 0.00 0.0 0.00 2.17 F
1474 1489 0.109597 CTGCGATTTGTTCAGGTGGC 60.110 55.0 0.00 0.0 0.00 5.01 F
1827 1844 0.616111 ACCTCGGCTGAATCTGGAGT 60.616 55.0 5.59 0.0 0.00 3.85 F
3333 3443 0.112218 CTTGTTCCCCATCCACCACA 59.888 55.0 0.00 0.0 0.00 4.17 F
3952 4116 0.179062 CAAGAGAATCGGGCAGAGGG 60.179 60.0 0.00 0.0 42.67 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1024 0.116143 CATAGAGGGAGGGAGGGAGG 59.884 65.0 0.00 0.00 0.00 4.30 R
1457 1472 0.387239 GTGCCACCTGAACAAATCGC 60.387 55.0 0.00 0.00 0.00 4.58 R
2511 2575 0.843872 GCGTTTCAACAAAACCTCGC 59.156 50.0 0.00 0.00 43.66 5.03 R
3321 3431 0.690192 TACACTGTGTGGTGGATGGG 59.310 55.0 22.97 0.00 41.09 4.00 R
3660 3824 0.392998 CCGTCAGGCTGCTGGTAATT 60.393 55.0 10.34 0.00 0.00 1.40 R
5276 5440 0.036732 GCAATGACAGGAGTCCACCA 59.963 55.0 12.86 6.29 44.33 4.17 R
5591 5800 0.319297 AACGCGACCTACCAACTGAC 60.319 55.0 15.93 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.431055 TTGCAAACAGCCAGTCGG 58.569 55.556 0.00 0.00 44.83 4.79
27 28 4.946038 CCAGTCGGCGGGATTTTA 57.054 55.556 7.21 0.00 31.21 1.52
28 29 2.690326 CCAGTCGGCGGGATTTTAG 58.310 57.895 7.21 0.00 31.21 1.85
29 30 1.436983 CCAGTCGGCGGGATTTTAGC 61.437 60.000 7.21 0.00 31.21 3.09
30 31 0.462047 CAGTCGGCGGGATTTTAGCT 60.462 55.000 7.21 0.00 0.00 3.32
31 32 0.252197 AGTCGGCGGGATTTTAGCTT 59.748 50.000 7.21 0.00 0.00 3.74
32 33 1.092348 GTCGGCGGGATTTTAGCTTT 58.908 50.000 7.21 0.00 0.00 3.51
33 34 1.091537 TCGGCGGGATTTTAGCTTTG 58.908 50.000 7.21 0.00 0.00 2.77
34 35 0.808755 CGGCGGGATTTTAGCTTTGT 59.191 50.000 0.00 0.00 0.00 2.83
35 36 1.202143 CGGCGGGATTTTAGCTTTGTC 60.202 52.381 0.00 0.00 0.00 3.18
36 37 1.202143 GGCGGGATTTTAGCTTTGTCG 60.202 52.381 0.00 0.00 0.00 4.35
37 38 1.467342 GCGGGATTTTAGCTTTGTCGT 59.533 47.619 0.00 0.00 0.00 4.34
38 39 2.095415 GCGGGATTTTAGCTTTGTCGTT 60.095 45.455 0.00 0.00 0.00 3.85
39 40 3.610821 GCGGGATTTTAGCTTTGTCGTTT 60.611 43.478 0.00 0.00 0.00 3.60
40 41 4.542735 CGGGATTTTAGCTTTGTCGTTTT 58.457 39.130 0.00 0.00 0.00 2.43
41 42 4.615541 CGGGATTTTAGCTTTGTCGTTTTC 59.384 41.667 0.00 0.00 0.00 2.29
42 43 5.562113 CGGGATTTTAGCTTTGTCGTTTTCT 60.562 40.000 0.00 0.00 0.00 2.52
43 44 6.347888 CGGGATTTTAGCTTTGTCGTTTTCTA 60.348 38.462 0.00 0.00 0.00 2.10
44 45 7.364970 GGGATTTTAGCTTTGTCGTTTTCTAA 58.635 34.615 0.00 0.00 0.00 2.10
45 46 7.863877 GGGATTTTAGCTTTGTCGTTTTCTAAA 59.136 33.333 0.00 0.00 0.00 1.85
46 47 9.240159 GGATTTTAGCTTTGTCGTTTTCTAAAA 57.760 29.630 0.00 0.00 39.08 1.52
48 49 7.974243 TTTAGCTTTGTCGTTTTCTAAAACC 57.026 32.000 11.62 1.44 44.05 3.27
49 50 5.570234 AGCTTTGTCGTTTTCTAAAACCA 57.430 34.783 11.62 3.69 44.05 3.67
50 51 5.956642 AGCTTTGTCGTTTTCTAAAACCAA 58.043 33.333 11.62 8.62 44.05 3.67
51 52 6.391537 AGCTTTGTCGTTTTCTAAAACCAAA 58.608 32.000 11.62 13.96 44.05 3.28
52 53 6.530181 AGCTTTGTCGTTTTCTAAAACCAAAG 59.470 34.615 25.84 25.84 46.56 2.77
53 54 6.237728 GCTTTGTCGTTTTCTAAAACCAAAGG 60.238 38.462 28.04 19.29 45.54 3.11
54 55 6.512342 TTGTCGTTTTCTAAAACCAAAGGA 57.488 33.333 11.62 1.95 44.05 3.36
55 56 6.512342 TGTCGTTTTCTAAAACCAAAGGAA 57.488 33.333 11.62 0.00 44.05 3.36
56 57 6.557110 TGTCGTTTTCTAAAACCAAAGGAAG 58.443 36.000 11.62 0.00 44.05 3.46
57 58 6.151480 TGTCGTTTTCTAAAACCAAAGGAAGT 59.849 34.615 11.62 0.00 44.05 3.01
58 59 7.336427 TGTCGTTTTCTAAAACCAAAGGAAGTA 59.664 33.333 11.62 0.00 44.05 2.24
59 60 8.183536 GTCGTTTTCTAAAACCAAAGGAAGTAA 58.816 33.333 11.62 0.00 44.05 2.24
60 61 8.905850 TCGTTTTCTAAAACCAAAGGAAGTAAT 58.094 29.630 11.62 0.00 44.05 1.89
67 68 7.940178 AAAACCAAAGGAAGTAATAAAAGCG 57.060 32.000 0.00 0.00 0.00 4.68
68 69 6.644248 AACCAAAGGAAGTAATAAAAGCGT 57.356 33.333 0.00 0.00 0.00 5.07
69 70 6.250344 ACCAAAGGAAGTAATAAAAGCGTC 57.750 37.500 0.00 0.00 0.00 5.19
70 71 5.182570 ACCAAAGGAAGTAATAAAAGCGTCC 59.817 40.000 0.00 0.00 0.00 4.79
71 72 5.414765 CCAAAGGAAGTAATAAAAGCGTCCT 59.585 40.000 0.00 0.00 41.57 3.85
72 73 6.403309 CCAAAGGAAGTAATAAAAGCGTCCTC 60.403 42.308 0.00 0.00 39.52 3.71
73 74 4.767478 AGGAAGTAATAAAAGCGTCCTCC 58.233 43.478 0.00 0.00 36.63 4.30
74 75 3.554731 GGAAGTAATAAAAGCGTCCTCCG 59.445 47.826 0.00 0.00 40.40 4.63
83 84 2.126071 CGTCCTCCGCAATCACGT 60.126 61.111 0.00 0.00 0.00 4.49
84 85 1.736645 CGTCCTCCGCAATCACGTT 60.737 57.895 0.00 0.00 0.00 3.99
85 86 1.289109 CGTCCTCCGCAATCACGTTT 61.289 55.000 0.00 0.00 0.00 3.60
86 87 0.442699 GTCCTCCGCAATCACGTTTC 59.557 55.000 0.00 0.00 0.00 2.78
87 88 0.320374 TCCTCCGCAATCACGTTTCT 59.680 50.000 0.00 0.00 0.00 2.52
88 89 1.156736 CCTCCGCAATCACGTTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
89 90 1.535462 CCTCCGCAATCACGTTTCTTT 59.465 47.619 0.00 0.00 0.00 2.52
90 91 2.739913 CCTCCGCAATCACGTTTCTTTA 59.260 45.455 0.00 0.00 0.00 1.85
91 92 3.374058 CCTCCGCAATCACGTTTCTTTAT 59.626 43.478 0.00 0.00 0.00 1.40
92 93 4.142687 CCTCCGCAATCACGTTTCTTTATT 60.143 41.667 0.00 0.00 0.00 1.40
93 94 5.064198 CCTCCGCAATCACGTTTCTTTATTA 59.936 40.000 0.00 0.00 0.00 0.98
94 95 6.402766 CCTCCGCAATCACGTTTCTTTATTAA 60.403 38.462 0.00 0.00 0.00 1.40
95 96 6.539324 TCCGCAATCACGTTTCTTTATTAAG 58.461 36.000 0.00 0.00 0.00 1.85
96 97 6.369340 TCCGCAATCACGTTTCTTTATTAAGA 59.631 34.615 0.00 0.00 38.61 2.10
97 98 7.018826 CCGCAATCACGTTTCTTTATTAAGAA 58.981 34.615 2.82 2.82 46.07 2.52
110 111 9.649167 TTCTTTATTAAGAAAGTACTCCCTTCG 57.351 33.333 19.22 0.00 45.08 3.79
111 112 8.810041 TCTTTATTAAGAAAGTACTCCCTTCGT 58.190 33.333 19.22 6.31 37.45 3.85
112 113 8.992835 TTTATTAAGAAAGTACTCCCTTCGTC 57.007 34.615 11.55 0.00 0.00 4.20
113 114 6.854091 ATTAAGAAAGTACTCCCTTCGTCT 57.146 37.500 11.55 0.34 0.00 4.18
114 115 4.787260 AAGAAAGTACTCCCTTCGTCTC 57.213 45.455 0.00 0.00 0.00 3.36
115 116 3.090790 AGAAAGTACTCCCTTCGTCTCC 58.909 50.000 0.00 0.00 0.00 3.71
116 117 2.903375 AAGTACTCCCTTCGTCTCCT 57.097 50.000 0.00 0.00 0.00 3.69
117 118 4.018597 AGAAAGTACTCCCTTCGTCTCCTA 60.019 45.833 0.00 0.00 0.00 2.94
118 119 4.313020 AAGTACTCCCTTCGTCTCCTAA 57.687 45.455 0.00 0.00 0.00 2.69
119 120 4.523168 AGTACTCCCTTCGTCTCCTAAT 57.477 45.455 0.00 0.00 0.00 1.73
120 121 5.643421 AGTACTCCCTTCGTCTCCTAATA 57.357 43.478 0.00 0.00 0.00 0.98
121 122 6.203526 AGTACTCCCTTCGTCTCCTAATAT 57.796 41.667 0.00 0.00 0.00 1.28
122 123 7.327064 AGTACTCCCTTCGTCTCCTAATATA 57.673 40.000 0.00 0.00 0.00 0.86
123 124 7.753630 AGTACTCCCTTCGTCTCCTAATATAA 58.246 38.462 0.00 0.00 0.00 0.98
124 125 7.884354 AGTACTCCCTTCGTCTCCTAATATAAG 59.116 40.741 0.00 0.00 0.00 1.73
125 126 6.850234 ACTCCCTTCGTCTCCTAATATAAGA 58.150 40.000 0.00 0.00 0.00 2.10
126 127 7.296098 ACTCCCTTCGTCTCCTAATATAAGAA 58.704 38.462 0.00 0.00 0.00 2.52
127 128 7.231115 ACTCCCTTCGTCTCCTAATATAAGAAC 59.769 40.741 0.00 0.00 0.00 3.01
128 129 6.206243 TCCCTTCGTCTCCTAATATAAGAACG 59.794 42.308 0.00 0.00 0.00 3.95
129 130 6.016443 CCCTTCGTCTCCTAATATAAGAACGT 60.016 42.308 0.00 0.00 0.00 3.99
130 131 7.173907 CCCTTCGTCTCCTAATATAAGAACGTA 59.826 40.741 0.00 0.00 0.00 3.57
131 132 8.728833 CCTTCGTCTCCTAATATAAGAACGTAT 58.271 37.037 0.00 0.00 0.00 3.06
173 174 5.991328 AGATGCAAATATGAGTACCAACG 57.009 39.130 0.00 0.00 0.00 4.10
180 181 2.561478 ATGAGTACCAACGCAAGGTT 57.439 45.000 0.00 0.00 38.97 3.50
186 187 1.981256 ACCAACGCAAGGTTCTTCAT 58.019 45.000 0.00 0.00 46.39 2.57
189 190 2.574322 CAACGCAAGGTTCTTCATTCG 58.426 47.619 0.00 0.00 46.39 3.34
196 197 4.499019 GCAAGGTTCTTCATTCGTTGGAAA 60.499 41.667 0.00 0.00 35.40 3.13
215 216 0.963962 AGTCTTTGACCTCGCGGTAA 59.036 50.000 6.13 0.00 45.73 2.85
274 275 6.491745 TGTCAAAATAGGCTTATTGACCACAA 59.508 34.615 24.42 12.00 46.90 3.33
280 281 3.941483 AGGCTTATTGACCACAAATCTCG 59.059 43.478 0.00 0.00 39.54 4.04
281 282 3.938963 GGCTTATTGACCACAAATCTCGA 59.061 43.478 0.00 0.00 39.54 4.04
282 283 4.034510 GGCTTATTGACCACAAATCTCGAG 59.965 45.833 5.93 5.93 39.54 4.04
286 287 0.613777 GACCACAAATCTCGAGGGGT 59.386 55.000 13.56 3.46 0.00 4.95
288 289 1.003233 ACCACAAATCTCGAGGGGTTC 59.997 52.381 13.56 0.00 0.00 3.62
303 304 2.577450 GGGTTCGCAAACAATTACGAC 58.423 47.619 0.00 0.00 34.20 4.34
351 352 4.389687 GCTGAAAACATCGCCATCAAATTT 59.610 37.500 0.00 0.00 0.00 1.82
489 490 3.181461 CCATACAATGTGAGAGGGAGGTC 60.181 52.174 0.00 0.00 0.00 3.85
592 594 2.748058 AAAAGAGCGCCGTGTGGGAT 62.748 55.000 2.29 0.00 38.47 3.85
703 708 4.148825 CGCCCTCCCTCCTTGTCG 62.149 72.222 0.00 0.00 0.00 4.35
704 709 3.003763 GCCCTCCCTCCTTGTCGT 61.004 66.667 0.00 0.00 0.00 4.34
705 710 3.020237 GCCCTCCCTCCTTGTCGTC 62.020 68.421 0.00 0.00 0.00 4.20
706 711 1.305381 CCCTCCCTCCTTGTCGTCT 60.305 63.158 0.00 0.00 0.00 4.18
1019 1024 7.826260 CTAACAAAACAGAATCTCTCTCTCC 57.174 40.000 0.00 0.00 29.07 3.71
1035 1046 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
1036 1047 1.705450 CCCTCCCTCCCTCCCTCTA 60.705 68.421 0.00 0.00 0.00 2.43
1065 1076 0.704076 ACAGCAGAGTCTCCTCCTCT 59.296 55.000 0.00 0.00 39.87 3.69
1145 1156 5.075067 TCCCTCTTCCCTTCTCAAAGATTTT 59.925 40.000 0.00 0.00 34.14 1.82
1148 1159 6.266330 CCTCTTCCCTTCTCAAAGATTTTGTT 59.734 38.462 1.92 0.00 34.14 2.83
1204 1215 1.202087 TGTTTGCGTGTTTCTTGTCCG 60.202 47.619 0.00 0.00 0.00 4.79
1209 1220 0.232303 CGTGTTTCTTGTCCGACTGC 59.768 55.000 0.00 0.00 0.00 4.40
1211 1222 0.534203 TGTTTCTTGTCCGACTGCCC 60.534 55.000 0.00 0.00 0.00 5.36
1212 1223 0.534203 GTTTCTTGTCCGACTGCCCA 60.534 55.000 0.00 0.00 0.00 5.36
1213 1224 0.400213 TTTCTTGTCCGACTGCCCAT 59.600 50.000 0.00 0.00 0.00 4.00
1214 1225 1.271856 TTCTTGTCCGACTGCCCATA 58.728 50.000 0.00 0.00 0.00 2.74
1278 1289 0.106519 CCTGGCCCCTTCATCGATTT 60.107 55.000 0.00 0.00 0.00 2.17
1300 1311 2.260844 TTGAGGTTTCTGCACTGGAG 57.739 50.000 0.00 0.00 0.00 3.86
1394 1405 7.011669 GGATTTCCTTGCATGATTTACAATTGG 59.988 37.037 10.83 0.00 0.00 3.16
1411 1422 6.424883 ACAATTGGGTTTATCCACGGTTATA 58.575 36.000 10.83 0.00 36.38 0.98
1412 1423 7.064229 ACAATTGGGTTTATCCACGGTTATAT 58.936 34.615 10.83 0.00 36.38 0.86
1413 1424 8.219178 ACAATTGGGTTTATCCACGGTTATATA 58.781 33.333 10.83 0.00 36.38 0.86
1414 1425 9.238368 CAATTGGGTTTATCCACGGTTATATAT 57.762 33.333 0.00 0.00 36.38 0.86
1415 1426 8.801882 ATTGGGTTTATCCACGGTTATATATG 57.198 34.615 0.00 0.00 36.38 1.78
1417 1428 8.153221 TGGGTTTATCCACGGTTATATATGAT 57.847 34.615 0.00 0.00 38.11 2.45
1418 1429 8.044309 TGGGTTTATCCACGGTTATATATGATG 58.956 37.037 0.00 0.00 38.11 3.07
1420 1431 9.314321 GGTTTATCCACGGTTATATATGATGAG 57.686 37.037 0.00 0.00 35.97 2.90
1429 1444 9.470399 ACGGTTATATATGATGAGTATGTGGTA 57.530 33.333 0.00 0.00 0.00 3.25
1457 1472 5.620879 GCAAAGAGCCCTATGTTTTTCTCTG 60.621 44.000 0.00 0.00 37.23 3.35
1474 1489 0.109597 CTGCGATTTGTTCAGGTGGC 60.110 55.000 0.00 0.00 0.00 5.01
1584 1599 4.937201 AGTTTCCCCTGTGTTTTCATTC 57.063 40.909 0.00 0.00 0.00 2.67
1719 1734 3.136763 CAGGACATGTCTCACATATGGC 58.863 50.000 24.50 4.69 36.53 4.40
1724 1739 3.054875 ACATGTCTCACATATGGCACTGT 60.055 43.478 7.80 0.00 36.53 3.55
1725 1740 4.162131 ACATGTCTCACATATGGCACTGTA 59.838 41.667 7.80 0.00 36.53 2.74
1738 1755 2.758979 GGCACTGTACTAGTCCTGCTAA 59.241 50.000 0.00 0.00 37.60 3.09
1827 1844 0.616111 ACCTCGGCTGAATCTGGAGT 60.616 55.000 5.59 0.00 0.00 3.85
1879 1896 1.978455 TTTCCCGCGGCCATGAGTAT 61.978 55.000 22.85 0.00 0.00 2.12
2035 2093 8.193250 TGAACTAATCTAAACAAATCCGCTAC 57.807 34.615 0.00 0.00 0.00 3.58
2049 2107 6.830873 AATCCGCTACTTCTATAATACGGT 57.169 37.500 0.00 0.00 40.25 4.83
2055 2113 5.404667 GCTACTTCTATAATACGGTGGCAAC 59.595 44.000 0.00 0.00 32.81 4.17
2058 2116 2.694628 TCTATAATACGGTGGCAACGGT 59.305 45.455 30.22 16.82 42.06 4.83
2068 2126 1.066752 GGCAACGGTTGGTGTTTCC 59.933 57.895 21.37 9.67 0.00 3.13
2107 2170 6.159575 TGGTATGAACTAGGGGATTTGATTGA 59.840 38.462 0.00 0.00 0.00 2.57
2118 2181 5.067023 GGGGATTTGATTGAGTGATTCTGTC 59.933 44.000 0.00 0.00 0.00 3.51
2177 2240 5.453567 AAAGGTTCAAATACTGCTCAACC 57.546 39.130 0.00 0.00 34.62 3.77
2246 2309 7.051000 AGGAGGCTTTGACTTATTCTATTGTC 58.949 38.462 0.00 0.00 0.00 3.18
2298 2361 4.832590 TCCGACGATAGAGGATTCTTTC 57.167 45.455 0.00 0.00 40.30 2.62
2345 2408 9.494271 TCAATCAAATATGCTATGGTAGAAGTC 57.506 33.333 0.00 0.00 0.00 3.01
2346 2409 9.499479 CAATCAAATATGCTATGGTAGAAGTCT 57.501 33.333 0.00 0.00 0.00 3.24
2386 2449 5.250235 TCAAATAACTTCGTTTGTGCCAA 57.750 34.783 0.00 0.00 36.83 4.52
2403 2466 3.697045 TGCCAATTTGTTATACCTTCCCG 59.303 43.478 0.00 0.00 0.00 5.14
2417 2480 1.939255 CTTCCCGTCTACGTACTCTCC 59.061 57.143 1.41 0.00 37.74 3.71
2462 2525 7.191425 GGATTTGCCAAAAGGGAACTTCAATT 61.191 38.462 0.00 0.00 43.49 2.32
2483 2546 7.869937 TCAATTTTGCGAGGTTTTGATTGATTA 59.130 29.630 0.00 0.00 30.04 1.75
2499 2563 9.862585 TTGATTGATTATTTTGTCATATCGTCG 57.137 29.630 0.00 0.00 0.00 5.12
2511 2575 7.229228 TGTCATATCGTCGTTCCTTATTTTG 57.771 36.000 0.00 0.00 0.00 2.44
2515 2579 2.664568 TCGTCGTTCCTTATTTTGCGAG 59.335 45.455 0.00 0.00 0.00 5.03
2516 2580 2.222729 CGTCGTTCCTTATTTTGCGAGG 60.223 50.000 0.00 0.00 0.00 4.63
2518 2582 3.187842 GTCGTTCCTTATTTTGCGAGGTT 59.812 43.478 0.00 0.00 32.33 3.50
2519 2583 3.816523 TCGTTCCTTATTTTGCGAGGTTT 59.183 39.130 0.00 0.00 32.33 3.27
2520 2584 4.276431 TCGTTCCTTATTTTGCGAGGTTTT 59.724 37.500 0.00 0.00 32.33 2.43
2521 2585 4.381566 CGTTCCTTATTTTGCGAGGTTTTG 59.618 41.667 0.00 0.00 32.33 2.44
2522 2586 5.286438 GTTCCTTATTTTGCGAGGTTTTGT 58.714 37.500 0.00 0.00 32.33 2.83
2523 2587 5.523438 TCCTTATTTTGCGAGGTTTTGTT 57.477 34.783 0.00 0.00 32.33 2.83
2524 2588 5.285651 TCCTTATTTTGCGAGGTTTTGTTG 58.714 37.500 0.00 0.00 32.33 3.33
2525 2589 5.067936 TCCTTATTTTGCGAGGTTTTGTTGA 59.932 36.000 0.00 0.00 32.33 3.18
2527 2591 6.256757 CCTTATTTTGCGAGGTTTTGTTGAAA 59.743 34.615 0.00 0.00 0.00 2.69
2528 2592 4.912528 TTTTGCGAGGTTTTGTTGAAAC 57.087 36.364 0.00 0.00 45.53 2.78
2633 2718 9.010029 GTTAGATTCCAAGATTTTCTGTGGTAA 57.990 33.333 0.00 0.00 31.26 2.85
2667 2752 1.561076 TCATCAATCAGACCACTGGGG 59.439 52.381 0.00 0.00 43.60 4.96
2725 2812 7.440198 CAGATTCTAGTAGCCTCAAATGATCA 58.560 38.462 0.00 0.00 0.00 2.92
2766 2853 0.914644 TCCTCTTCAGGAGCCAATGG 59.085 55.000 0.00 0.00 44.75 3.16
2868 2967 2.621338 TCTGTTCATCAGCACCGATTC 58.379 47.619 0.00 0.00 43.32 2.52
2957 3059 7.246171 ACACAATCTGACTTACTAACTCCAT 57.754 36.000 0.00 0.00 0.00 3.41
3229 3338 2.273179 AACGGTACCTCGCTGCTGA 61.273 57.895 10.90 0.00 0.00 4.26
3272 3381 6.930164 GTCTTCTCTCTCATGCACATATGAAT 59.070 38.462 10.38 0.00 36.69 2.57
3295 3405 9.770097 GAATTACCAGATCAAGAATCACTGATA 57.230 33.333 0.00 0.00 36.79 2.15
3306 3416 5.999044 AGAATCACTGATATTCTGTTGCCT 58.001 37.500 7.94 0.00 41.13 4.75
3307 3417 5.821470 AGAATCACTGATATTCTGTTGCCTG 59.179 40.000 7.94 0.00 41.13 4.85
3321 3431 3.010420 GTTGCCTGGAGATACTTGTTCC 58.990 50.000 0.00 0.00 0.00 3.62
3333 3443 0.112218 CTTGTTCCCCATCCACCACA 59.888 55.000 0.00 0.00 0.00 4.17
3348 3512 4.103469 TCCACCACACAGTGTATAAAGGTT 59.897 41.667 5.69 0.00 35.93 3.50
3349 3513 4.825085 CCACCACACAGTGTATAAAGGTTT 59.175 41.667 5.69 0.00 35.93 3.27
3350 3514 5.300792 CCACCACACAGTGTATAAAGGTTTT 59.699 40.000 5.69 0.00 35.93 2.43
3351 3515 6.183360 CCACCACACAGTGTATAAAGGTTTTT 60.183 38.462 5.69 0.00 35.93 1.94
3371 3535 3.786516 TTTCTTTTCGAAAAAGGCGGT 57.213 38.095 22.67 0.00 38.62 5.68
3372 3536 2.766970 TCTTTTCGAAAAAGGCGGTG 57.233 45.000 22.67 10.46 0.00 4.94
3373 3537 2.018515 TCTTTTCGAAAAAGGCGGTGT 58.981 42.857 22.67 0.00 0.00 4.16
3374 3538 3.204526 TCTTTTCGAAAAAGGCGGTGTA 58.795 40.909 22.67 0.00 0.00 2.90
3375 3539 3.816523 TCTTTTCGAAAAAGGCGGTGTAT 59.183 39.130 22.67 0.00 0.00 2.29
3376 3540 4.996122 TCTTTTCGAAAAAGGCGGTGTATA 59.004 37.500 22.67 0.00 0.00 1.47
3377 3541 5.469421 TCTTTTCGAAAAAGGCGGTGTATAA 59.531 36.000 22.67 0.00 0.00 0.98
3378 3542 5.686159 TTTCGAAAAAGGCGGTGTATAAA 57.314 34.783 8.44 0.00 0.00 1.40
3379 3543 4.932268 TCGAAAAAGGCGGTGTATAAAG 57.068 40.909 0.00 0.00 0.00 1.85
3380 3544 4.317488 TCGAAAAAGGCGGTGTATAAAGT 58.683 39.130 0.00 0.00 0.00 2.66
3381 3545 4.756135 TCGAAAAAGGCGGTGTATAAAGTT 59.244 37.500 0.00 0.00 0.00 2.66
3382 3546 5.931146 TCGAAAAAGGCGGTGTATAAAGTTA 59.069 36.000 0.00 0.00 0.00 2.24
3383 3547 6.594937 TCGAAAAAGGCGGTGTATAAAGTTAT 59.405 34.615 0.00 0.00 0.00 1.89
3404 3568 8.064447 GTTATTAGATGAATAACGGTTACGCA 57.936 34.615 2.10 5.00 46.11 5.24
3425 3589 0.179084 ATATGCGTCACCGTGGAAGG 60.179 55.000 0.00 0.00 36.15 3.46
3447 3611 1.919600 GCCCCTGATGGACAGCTCTT 61.920 60.000 0.00 0.00 44.52 2.85
3461 3625 1.620819 AGCTCTTCGGTGTTGATGTCT 59.379 47.619 0.00 0.00 0.00 3.41
3471 3635 0.883833 GTTGATGTCTGGGCACTTGG 59.116 55.000 0.00 0.00 0.00 3.61
3505 3669 1.153489 CTGTCGGCCATGGTCAGAG 60.153 63.158 18.31 7.79 0.00 3.35
3506 3670 1.892819 CTGTCGGCCATGGTCAGAGT 61.893 60.000 18.31 0.00 0.00 3.24
3507 3671 1.153549 GTCGGCCATGGTCAGAGTC 60.154 63.158 18.31 0.49 0.00 3.36
3508 3672 1.609210 TCGGCCATGGTCAGAGTCA 60.609 57.895 18.31 0.00 0.00 3.41
3509 3673 1.153489 CGGCCATGGTCAGAGTCAG 60.153 63.158 18.31 0.00 0.00 3.51
3510 3674 1.607801 CGGCCATGGTCAGAGTCAGA 61.608 60.000 18.31 0.00 0.00 3.27
3660 3824 0.747255 GCCGGAATCTAGCTCTGTGA 59.253 55.000 5.05 0.00 0.00 3.58
3676 3840 1.350684 TGTGAATTACCAGCAGCCTGA 59.649 47.619 0.00 0.00 41.77 3.86
3701 3865 1.227943 AGCAGGCAAGTCGAAAGCA 60.228 52.632 7.21 0.00 0.00 3.91
3714 3878 1.569479 GAAAGCACCGGTGACTCTGC 61.569 60.000 38.30 21.40 0.00 4.26
3838 4002 4.537688 TGGAGGAAACATCATCTCCTTCTT 59.462 41.667 9.27 0.00 44.43 2.52
3930 4094 1.128692 CTCGGCCGAATCTTTGTGTTC 59.871 52.381 30.53 0.00 0.00 3.18
3952 4116 0.179062 CAAGAGAATCGGGCAGAGGG 60.179 60.000 0.00 0.00 42.67 4.30
3962 4126 1.228228 GGCAGAGGGGCATGATGAA 59.772 57.895 0.00 0.00 42.77 2.57
3974 4138 2.885266 GCATGATGAACTGCTGGATGAT 59.115 45.455 0.00 0.00 35.49 2.45
4023 4187 0.737219 GCATCGCCTTCAATTCAGCT 59.263 50.000 0.00 0.00 0.00 4.24
4065 4229 2.497138 TGACAGAGACTTCGTTCGGTA 58.503 47.619 0.00 0.00 0.00 4.02
4250 4414 4.373116 GGTGCCGAGAGCCGAACA 62.373 66.667 0.00 0.00 42.71 3.18
4831 4995 0.534203 AAACGGTGCAAGGTCGACAT 60.534 50.000 18.91 7.60 0.00 3.06
4880 5044 3.884774 TTCTGCAAGGCCCACGGT 61.885 61.111 0.00 0.00 0.00 4.83
4997 5161 2.113774 CAGTCCCAGGCACAGCAA 59.886 61.111 0.00 0.00 0.00 3.91
5203 5367 2.334023 GCTGGTTCCCCTCTCTATGAT 58.666 52.381 0.00 0.00 0.00 2.45
5208 5372 2.635427 GTTCCCCTCTCTATGATGTCCC 59.365 54.545 0.00 0.00 0.00 4.46
5386 5550 9.965902 ATTTCTGTCTGTCCAAATTATACTTCT 57.034 29.630 0.00 0.00 0.00 2.85
5387 5551 9.793259 TTTCTGTCTGTCCAAATTATACTTCTT 57.207 29.630 0.00 0.00 0.00 2.52
5388 5552 8.777865 TCTGTCTGTCCAAATTATACTTCTTG 57.222 34.615 0.00 0.00 0.00 3.02
5389 5553 8.593679 TCTGTCTGTCCAAATTATACTTCTTGA 58.406 33.333 0.00 0.00 0.00 3.02
5390 5554 9.388506 CTGTCTGTCCAAATTATACTTCTTGAT 57.611 33.333 0.00 0.00 0.00 2.57
5391 5555 9.739276 TGTCTGTCCAAATTATACTTCTTGATT 57.261 29.630 0.00 0.00 0.00 2.57
5412 5576 9.567848 TTGATTAATACAATCCTTTCTTTTCGC 57.432 29.630 0.00 0.00 0.00 4.70
5413 5577 8.735315 TGATTAATACAATCCTTTCTTTTCGCA 58.265 29.630 0.00 0.00 0.00 5.10
5414 5578 9.567848 GATTAATACAATCCTTTCTTTTCGCAA 57.432 29.630 0.00 0.00 0.00 4.85
5415 5579 9.921637 ATTAATACAATCCTTTCTTTTCGCAAA 57.078 25.926 0.00 0.00 0.00 3.68
5416 5580 9.751542 TTAATACAATCCTTTCTTTTCGCAAAA 57.248 25.926 0.00 0.00 0.00 2.44
5417 5581 8.655651 AATACAATCCTTTCTTTTCGCAAAAA 57.344 26.923 0.00 0.00 33.42 1.94
5523 5715 8.303876 TGAACTGTTATGGGAAAGCTTAAATTC 58.696 33.333 0.00 0.00 0.00 2.17
5591 5800 6.882140 AGACCGATATCTCTACTCCTAATGTG 59.118 42.308 0.34 0.00 0.00 3.21
5625 5834 3.730215 GTCGCGTTTCGGGTTTTATTTTT 59.270 39.130 5.77 0.00 40.60 1.94
5684 5893 2.789979 CTTCCTCCCACCTCCCCCTT 62.790 65.000 0.00 0.00 0.00 3.95
5708 5917 3.930229 GCCGTGAAAAACCAAGAAAAACT 59.070 39.130 0.00 0.00 0.00 2.66
5805 6015 2.750712 CGGTTTATTTTCGTCCCACCAT 59.249 45.455 0.00 0.00 0.00 3.55
5813 6023 2.649531 TCGTCCCACCATTTTCAACT 57.350 45.000 0.00 0.00 0.00 3.16
6224 6438 0.670546 CCCTGAAGCACGAACACGAT 60.671 55.000 0.00 0.00 0.00 3.73
6240 6454 1.296715 GATTGCACCTCGGGTCTGT 59.703 57.895 0.00 0.00 31.02 3.41
6318 6532 5.189934 CCTACAAATTCCTCAACCTCTACCT 59.810 44.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.431055 CCGACTGGCTGTTTGCAA 58.569 55.556 0.00 0.00 45.15 4.08
10 11 1.436983 GCTAAAATCCCGCCGACTGG 61.437 60.000 0.00 0.00 38.77 4.00
11 12 0.462047 AGCTAAAATCCCGCCGACTG 60.462 55.000 0.00 0.00 0.00 3.51
12 13 0.252197 AAGCTAAAATCCCGCCGACT 59.748 50.000 0.00 0.00 0.00 4.18
13 14 1.092348 AAAGCTAAAATCCCGCCGAC 58.908 50.000 0.00 0.00 0.00 4.79
14 15 1.091537 CAAAGCTAAAATCCCGCCGA 58.908 50.000 0.00 0.00 0.00 5.54
15 16 0.808755 ACAAAGCTAAAATCCCGCCG 59.191 50.000 0.00 0.00 0.00 6.46
16 17 1.202143 CGACAAAGCTAAAATCCCGCC 60.202 52.381 0.00 0.00 0.00 6.13
17 18 1.467342 ACGACAAAGCTAAAATCCCGC 59.533 47.619 0.00 0.00 0.00 6.13
18 19 3.824414 AACGACAAAGCTAAAATCCCG 57.176 42.857 0.00 0.00 0.00 5.14
19 20 5.769367 AGAAAACGACAAAGCTAAAATCCC 58.231 37.500 0.00 0.00 0.00 3.85
20 21 8.791355 TTTAGAAAACGACAAAGCTAAAATCC 57.209 30.769 0.00 0.00 0.00 3.01
22 23 9.027129 GGTTTTAGAAAACGACAAAGCTAAAAT 57.973 29.630 10.83 0.00 47.00 1.82
23 24 8.027771 TGGTTTTAGAAAACGACAAAGCTAAAA 58.972 29.630 10.83 0.00 47.00 1.52
24 25 7.536855 TGGTTTTAGAAAACGACAAAGCTAAA 58.463 30.769 10.83 0.00 47.00 1.85
25 26 7.086230 TGGTTTTAGAAAACGACAAAGCTAA 57.914 32.000 10.83 0.00 47.00 3.09
26 27 6.680874 TGGTTTTAGAAAACGACAAAGCTA 57.319 33.333 10.83 0.00 47.00 3.32
27 28 5.570234 TGGTTTTAGAAAACGACAAAGCT 57.430 34.783 10.83 0.00 47.00 3.74
28 29 6.237728 CCTTTGGTTTTAGAAAACGACAAAGC 60.238 38.462 25.28 10.26 44.97 3.51
29 30 7.030768 TCCTTTGGTTTTAGAAAACGACAAAG 58.969 34.615 24.56 24.56 47.00 2.77
30 31 6.921914 TCCTTTGGTTTTAGAAAACGACAAA 58.078 32.000 15.39 15.39 47.00 2.83
31 32 6.512342 TCCTTTGGTTTTAGAAAACGACAA 57.488 33.333 10.83 8.11 47.00 3.18
32 33 6.151480 ACTTCCTTTGGTTTTAGAAAACGACA 59.849 34.615 10.83 3.12 47.00 4.35
33 34 6.558009 ACTTCCTTTGGTTTTAGAAAACGAC 58.442 36.000 10.83 0.85 47.00 4.34
34 35 6.762702 ACTTCCTTTGGTTTTAGAAAACGA 57.237 33.333 10.83 5.34 47.00 3.85
41 42 9.124807 CGCTTTTATTACTTCCTTTGGTTTTAG 57.875 33.333 0.00 0.00 0.00 1.85
42 43 8.631797 ACGCTTTTATTACTTCCTTTGGTTTTA 58.368 29.630 0.00 0.00 0.00 1.52
43 44 7.494211 ACGCTTTTATTACTTCCTTTGGTTTT 58.506 30.769 0.00 0.00 0.00 2.43
44 45 7.046292 ACGCTTTTATTACTTCCTTTGGTTT 57.954 32.000 0.00 0.00 0.00 3.27
45 46 6.294342 GGACGCTTTTATTACTTCCTTTGGTT 60.294 38.462 0.00 0.00 0.00 3.67
46 47 5.182570 GGACGCTTTTATTACTTCCTTTGGT 59.817 40.000 0.00 0.00 0.00 3.67
47 48 5.414765 AGGACGCTTTTATTACTTCCTTTGG 59.585 40.000 0.00 0.00 28.31 3.28
48 49 6.403309 GGAGGACGCTTTTATTACTTCCTTTG 60.403 42.308 0.00 0.00 32.66 2.77
49 50 5.646793 GGAGGACGCTTTTATTACTTCCTTT 59.353 40.000 0.00 0.00 32.66 3.11
50 51 5.183969 GGAGGACGCTTTTATTACTTCCTT 58.816 41.667 0.00 0.00 32.66 3.36
51 52 4.679905 CGGAGGACGCTTTTATTACTTCCT 60.680 45.833 0.00 0.00 34.99 3.36
52 53 3.554731 CGGAGGACGCTTTTATTACTTCC 59.445 47.826 0.00 0.00 34.82 3.46
53 54 4.773742 CGGAGGACGCTTTTATTACTTC 57.226 45.455 0.00 0.00 34.82 3.01
67 68 0.442699 GAAACGTGATTGCGGAGGAC 59.557 55.000 0.00 0.00 35.98 3.85
68 69 0.320374 AGAAACGTGATTGCGGAGGA 59.680 50.000 0.00 0.00 35.98 3.71
69 70 1.156736 AAGAAACGTGATTGCGGAGG 58.843 50.000 0.00 0.00 35.98 4.30
70 71 2.969443 AAAGAAACGTGATTGCGGAG 57.031 45.000 0.00 0.00 35.98 4.63
71 72 6.369340 TCTTAATAAAGAAACGTGATTGCGGA 59.631 34.615 0.00 0.00 38.81 5.54
72 73 6.539324 TCTTAATAAAGAAACGTGATTGCGG 58.461 36.000 0.00 0.00 38.81 5.69
85 86 8.810041 ACGAAGGGAGTACTTTCTTAATAAAGA 58.190 33.333 17.46 2.18 38.50 2.52
86 87 8.999220 ACGAAGGGAGTACTTTCTTAATAAAG 57.001 34.615 10.81 10.81 41.35 1.85
87 88 8.810041 AGACGAAGGGAGTACTTTCTTAATAAA 58.190 33.333 10.39 0.00 0.00 1.40
88 89 8.358582 AGACGAAGGGAGTACTTTCTTAATAA 57.641 34.615 10.39 0.00 0.00 1.40
89 90 7.067981 GGAGACGAAGGGAGTACTTTCTTAATA 59.932 40.741 10.39 0.00 0.00 0.98
90 91 6.127394 GGAGACGAAGGGAGTACTTTCTTAAT 60.127 42.308 10.39 4.03 0.00 1.40
91 92 5.184671 GGAGACGAAGGGAGTACTTTCTTAA 59.815 44.000 10.39 0.00 0.00 1.85
92 93 4.704057 GGAGACGAAGGGAGTACTTTCTTA 59.296 45.833 10.39 0.00 0.00 2.10
93 94 3.510753 GGAGACGAAGGGAGTACTTTCTT 59.489 47.826 10.26 10.26 0.00 2.52
94 95 3.090790 GGAGACGAAGGGAGTACTTTCT 58.909 50.000 0.00 0.00 0.00 2.52
95 96 3.090790 AGGAGACGAAGGGAGTACTTTC 58.909 50.000 0.00 0.00 0.00 2.62
96 97 3.172471 AGGAGACGAAGGGAGTACTTT 57.828 47.619 0.00 0.00 0.00 2.66
97 98 2.903375 AGGAGACGAAGGGAGTACTT 57.097 50.000 0.00 0.00 0.00 2.24
98 99 4.523168 ATTAGGAGACGAAGGGAGTACT 57.477 45.455 0.00 0.00 0.00 2.73
99 100 7.882271 TCTTATATTAGGAGACGAAGGGAGTAC 59.118 40.741 0.00 0.00 0.00 2.73
100 101 7.982252 TCTTATATTAGGAGACGAAGGGAGTA 58.018 38.462 0.00 0.00 0.00 2.59
101 102 6.850234 TCTTATATTAGGAGACGAAGGGAGT 58.150 40.000 0.00 0.00 0.00 3.85
102 103 7.573469 CGTTCTTATATTAGGAGACGAAGGGAG 60.573 44.444 0.00 0.00 0.00 4.30
103 104 6.206243 CGTTCTTATATTAGGAGACGAAGGGA 59.794 42.308 0.00 0.00 0.00 4.20
104 105 6.016443 ACGTTCTTATATTAGGAGACGAAGGG 60.016 42.308 15.06 0.00 0.00 3.95
105 106 6.968250 ACGTTCTTATATTAGGAGACGAAGG 58.032 40.000 15.06 0.00 0.00 3.46
121 122 9.060347 ACTTCCGTCTCATAATATACGTTCTTA 57.940 33.333 0.00 0.00 33.63 2.10
122 123 7.938715 ACTTCCGTCTCATAATATACGTTCTT 58.061 34.615 0.00 0.00 33.63 2.52
123 124 7.507733 ACTTCCGTCTCATAATATACGTTCT 57.492 36.000 0.00 0.00 33.63 3.01
124 125 8.502387 ACTACTTCCGTCTCATAATATACGTTC 58.498 37.037 0.00 0.00 33.63 3.95
125 126 8.388484 ACTACTTCCGTCTCATAATATACGTT 57.612 34.615 0.00 0.00 33.63 3.99
126 127 7.976135 ACTACTTCCGTCTCATAATATACGT 57.024 36.000 0.00 0.00 33.63 3.57
127 128 9.363763 TCTACTACTTCCGTCTCATAATATACG 57.636 37.037 0.00 0.00 35.20 3.06
130 131 8.679100 GCATCTACTACTTCCGTCTCATAATAT 58.321 37.037 0.00 0.00 0.00 1.28
131 132 7.664318 TGCATCTACTACTTCCGTCTCATAATA 59.336 37.037 0.00 0.00 0.00 0.98
132 133 6.490381 TGCATCTACTACTTCCGTCTCATAAT 59.510 38.462 0.00 0.00 0.00 1.28
133 134 5.826208 TGCATCTACTACTTCCGTCTCATAA 59.174 40.000 0.00 0.00 0.00 1.90
134 135 5.374071 TGCATCTACTACTTCCGTCTCATA 58.626 41.667 0.00 0.00 0.00 2.15
135 136 4.207955 TGCATCTACTACTTCCGTCTCAT 58.792 43.478 0.00 0.00 0.00 2.90
136 137 3.617284 TGCATCTACTACTTCCGTCTCA 58.383 45.455 0.00 0.00 0.00 3.27
137 138 4.634184 TTGCATCTACTACTTCCGTCTC 57.366 45.455 0.00 0.00 0.00 3.36
138 139 5.599999 ATTTGCATCTACTACTTCCGTCT 57.400 39.130 0.00 0.00 0.00 4.18
139 140 7.145985 TCATATTTGCATCTACTACTTCCGTC 58.854 38.462 0.00 0.00 0.00 4.79
140 141 7.050970 TCATATTTGCATCTACTACTTCCGT 57.949 36.000 0.00 0.00 0.00 4.69
141 142 7.148641 ACTCATATTTGCATCTACTACTTCCG 58.851 38.462 0.00 0.00 0.00 4.30
147 148 7.865889 CGTTGGTACTCATATTTGCATCTACTA 59.134 37.037 0.00 0.00 0.00 1.82
149 150 6.564125 GCGTTGGTACTCATATTTGCATCTAC 60.564 42.308 0.00 0.00 0.00 2.59
160 161 3.259876 AGAACCTTGCGTTGGTACTCATA 59.740 43.478 0.00 0.00 36.69 2.15
173 174 2.552315 TCCAACGAATGAAGAACCTTGC 59.448 45.455 0.00 0.00 0.00 4.01
180 181 5.820423 TCAAAGACTTTCCAACGAATGAAGA 59.180 36.000 0.00 0.00 0.00 2.87
186 187 3.875134 GAGGTCAAAGACTTTCCAACGAA 59.125 43.478 8.06 0.00 32.47 3.85
189 190 2.031944 GCGAGGTCAAAGACTTTCCAAC 60.032 50.000 8.06 3.23 32.47 3.77
215 216 1.893919 GAGGTTTGGGAGAGCTCGCT 61.894 60.000 17.35 0.00 42.28 4.93
221 222 3.214696 AGTTTGTGAGGTTTGGGAGAG 57.785 47.619 0.00 0.00 0.00 3.20
222 223 3.287222 CAAGTTTGTGAGGTTTGGGAGA 58.713 45.455 0.00 0.00 0.00 3.71
223 224 2.223805 GCAAGTTTGTGAGGTTTGGGAG 60.224 50.000 0.00 0.00 0.00 4.30
280 281 2.413634 CGTAATTGTTTGCGAACCCCTC 60.414 50.000 14.35 1.09 42.66 4.30
281 282 1.538075 CGTAATTGTTTGCGAACCCCT 59.462 47.619 14.35 1.07 42.66 4.79
282 283 1.536331 TCGTAATTGTTTGCGAACCCC 59.464 47.619 14.35 0.00 45.08 4.95
288 289 3.791887 TGTTTTGGTCGTAATTGTTTGCG 59.208 39.130 0.00 0.00 41.59 4.85
292 293 7.036220 TCATGTTTGTTTTGGTCGTAATTGTT 58.964 30.769 0.00 0.00 0.00 2.83
303 304 7.062605 GCATCTGATTACTCATGTTTGTTTTGG 59.937 37.037 0.00 0.00 0.00 3.28
351 352 3.068560 CGTTTGGTAGGTTTGAATCGGA 58.931 45.455 0.00 0.00 0.00 4.55
542 543 2.751837 GCAAGCACCTACCTGGCC 60.752 66.667 0.00 0.00 40.22 5.36
556 557 3.197614 TTTTTCCCACGCACGCAA 58.802 50.000 0.00 0.00 0.00 4.85
1019 1024 0.116143 CATAGAGGGAGGGAGGGAGG 59.884 65.000 0.00 0.00 0.00 4.30
1035 1046 1.338105 ACTCTGCTGTCTTTGCGCATA 60.338 47.619 12.75 5.38 32.62 3.14
1036 1047 0.604780 ACTCTGCTGTCTTTGCGCAT 60.605 50.000 12.75 0.00 32.62 4.73
1065 1076 4.524714 GGATCTATCTCAATGGAGGACGAA 59.475 45.833 0.00 0.00 41.69 3.85
1145 1156 5.247110 ACAAAGCAAGAGAGGATAGAGAACA 59.753 40.000 0.00 0.00 0.00 3.18
1148 1159 6.365970 AAACAAAGCAAGAGAGGATAGAGA 57.634 37.500 0.00 0.00 0.00 3.10
1204 1215 5.932303 ACGAAATATGTATGTATGGGCAGTC 59.068 40.000 0.00 0.00 0.00 3.51
1209 1220 5.444087 CGCGAACGAAATATGTATGTATGGG 60.444 44.000 0.00 0.00 43.93 4.00
1236 1247 5.236047 GGACTCTGAATGAATCAAGAATCCG 59.764 44.000 0.00 0.00 37.67 4.18
1278 1289 3.360867 TCCAGTGCAGAAACCTCAAAAA 58.639 40.909 0.00 0.00 0.00 1.94
1300 1311 5.977129 CGGCTGAATTTCCATAATTACAACC 59.023 40.000 0.00 0.00 0.00 3.77
1365 1376 5.662208 TGTAAATCATGCAAGGAAATCCCAT 59.338 36.000 0.00 0.00 37.41 4.00
1394 1405 9.314321 CTCATCATATATAACCGTGGATAAACC 57.686 37.037 0.00 0.00 39.54 3.27
1411 1422 6.019108 TGCTCCTACCACATACTCATCATAT 58.981 40.000 0.00 0.00 0.00 1.78
1412 1423 5.393866 TGCTCCTACCACATACTCATCATA 58.606 41.667 0.00 0.00 0.00 2.15
1413 1424 4.226384 TGCTCCTACCACATACTCATCAT 58.774 43.478 0.00 0.00 0.00 2.45
1414 1425 3.642141 TGCTCCTACCACATACTCATCA 58.358 45.455 0.00 0.00 0.00 3.07
1415 1426 4.672587 TTGCTCCTACCACATACTCATC 57.327 45.455 0.00 0.00 0.00 2.92
1417 1428 4.093743 TCTTTGCTCCTACCACATACTCA 58.906 43.478 0.00 0.00 0.00 3.41
1418 1429 4.688021 CTCTTTGCTCCTACCACATACTC 58.312 47.826 0.00 0.00 0.00 2.59
1420 1431 3.198872 GCTCTTTGCTCCTACCACATAC 58.801 50.000 0.00 0.00 38.95 2.39
1429 1444 1.589414 ACATAGGGCTCTTTGCTCCT 58.411 50.000 3.68 0.00 45.11 3.69
1442 1457 5.942872 ACAAATCGCAGAGAAAAACATAGG 58.057 37.500 0.00 0.00 43.63 2.57
1447 1462 4.676924 CCTGAACAAATCGCAGAGAAAAAC 59.323 41.667 0.00 0.00 43.63 2.43
1452 1467 2.416747 CACCTGAACAAATCGCAGAGA 58.583 47.619 0.00 0.00 43.63 3.10
1457 1472 0.387239 GTGCCACCTGAACAAATCGC 60.387 55.000 0.00 0.00 0.00 4.58
1474 1489 1.787012 AACAGTACCTTAACGGCGTG 58.213 50.000 15.70 2.78 35.61 5.34
1479 1494 5.574055 TCGAATAGCAAACAGTACCTTAACG 59.426 40.000 0.00 0.00 0.00 3.18
1539 1554 8.875168 ACTATGATCTACTCTAAAATGGAAGGG 58.125 37.037 0.00 0.00 0.00 3.95
1719 1734 5.646577 AGTTTAGCAGGACTAGTACAGTG 57.353 43.478 8.10 0.00 37.72 3.66
1724 1739 7.729124 AATTGGTAGTTTAGCAGGACTAGTA 57.271 36.000 0.00 0.00 37.49 1.82
1725 1740 6.622427 AATTGGTAGTTTAGCAGGACTAGT 57.378 37.500 0.00 0.00 37.49 2.57
1791 1808 4.442893 CCGAGGTCTCCATATAAGCAAACA 60.443 45.833 0.00 0.00 0.00 2.83
1827 1844 6.558775 AGAGATATGGGATGCTACCTTTGTAA 59.441 38.462 0.00 0.00 0.00 2.41
1879 1896 6.769134 TTACTAGACGATCTGATGTTCCAA 57.231 37.500 0.00 0.00 0.00 3.53
2035 2093 3.739300 CCGTTGCCACCGTATTATAGAAG 59.261 47.826 0.00 0.00 0.00 2.85
2049 2107 1.668101 GGAAACACCAACCGTTGCCA 61.668 55.000 5.68 0.00 41.22 4.92
2055 2113 1.616159 AATCTGGGAAACACCAACCG 58.384 50.000 0.00 0.00 40.68 4.44
2058 2116 4.698304 GTCGATAAATCTGGGAAACACCAA 59.302 41.667 0.00 0.00 40.68 3.67
2107 2170 4.548451 TTGAGCAGATGACAGAATCACT 57.452 40.909 0.00 0.00 41.24 3.41
2118 2181 1.270518 CCGACCCCTATTGAGCAGATG 60.271 57.143 0.00 0.00 0.00 2.90
2201 2264 3.947196 CCTTTGCATAAGAGCCACATACA 59.053 43.478 9.37 0.00 0.00 2.29
2246 2309 1.234821 TAAAAGGGCGTGTCAAGCAG 58.765 50.000 12.89 0.00 36.08 4.24
2298 2361 4.758674 TGATGAAAGCTCTCTTTTCACCAG 59.241 41.667 0.00 0.00 42.24 4.00
2386 2449 5.127682 ACGTAGACGGGAAGGTATAACAAAT 59.872 40.000 7.04 0.00 44.95 2.32
2403 2466 2.222911 GGCGTATGGAGAGTACGTAGAC 59.777 54.545 0.00 0.00 44.89 2.59
2417 2480 7.630242 AATCCAAATCCTTATATGGCGTATG 57.370 36.000 9.50 0.00 32.87 2.39
2450 2513 2.296190 ACCTCGCAAAATTGAAGTTCCC 59.704 45.455 0.00 0.00 0.00 3.97
2462 2525 8.494347 CAAAATAATCAATCAAAACCTCGCAAA 58.506 29.630 0.00 0.00 0.00 3.68
2483 2546 8.433421 AATAAGGAACGACGATATGACAAAAT 57.567 30.769 0.00 0.00 0.00 1.82
2495 2558 2.222729 CCTCGCAAAATAAGGAACGACG 60.223 50.000 0.00 0.00 31.44 5.12
2499 2563 5.286438 ACAAAACCTCGCAAAATAAGGAAC 58.714 37.500 0.00 0.00 34.16 3.62
2511 2575 0.843872 GCGTTTCAACAAAACCTCGC 59.156 50.000 0.00 0.00 43.66 5.03
2515 2579 3.701241 TGAGATGCGTTTCAACAAAACC 58.299 40.909 0.00 0.00 43.66 3.27
2516 2580 4.975502 TCATGAGATGCGTTTCAACAAAAC 59.024 37.500 2.90 0.00 43.22 2.43
2518 2582 4.827304 TCATGAGATGCGTTTCAACAAA 57.173 36.364 2.90 0.00 0.00 2.83
2519 2583 4.827304 TTCATGAGATGCGTTTCAACAA 57.173 36.364 2.90 0.00 0.00 2.83
2520 2584 6.682423 ATATTCATGAGATGCGTTTCAACA 57.318 33.333 2.90 0.00 0.00 3.33
2521 2585 7.164826 GTGAATATTCATGAGATGCGTTTCAAC 59.835 37.037 20.65 0.00 39.73 3.18
2522 2586 7.066163 AGTGAATATTCATGAGATGCGTTTCAA 59.934 33.333 20.65 0.00 39.73 2.69
2523 2587 6.539826 AGTGAATATTCATGAGATGCGTTTCA 59.460 34.615 20.65 1.05 39.73 2.69
2524 2588 6.952743 AGTGAATATTCATGAGATGCGTTTC 58.047 36.000 20.65 3.92 39.73 2.78
2525 2589 6.765036 AGAGTGAATATTCATGAGATGCGTTT 59.235 34.615 20.65 0.00 39.73 3.60
2527 2591 5.851720 AGAGTGAATATTCATGAGATGCGT 58.148 37.500 20.65 0.00 39.73 5.24
2528 2592 6.309980 GGTAGAGTGAATATTCATGAGATGCG 59.690 42.308 20.65 0.00 39.73 4.73
2600 2685 8.454106 AGAAAATCTTGGAATCTAACACAATCG 58.546 33.333 0.00 0.00 0.00 3.34
2633 2718 2.171568 TGATGATCTGGCTCCACTCT 57.828 50.000 0.00 0.00 0.00 3.24
2725 2812 9.860898 GAGGATGTTAAATTGCTCAAACTAATT 57.139 29.630 3.45 0.00 31.34 1.40
2766 2853 7.429920 TGCACACAACTTCGTAAAAGAATAAAC 59.570 33.333 0.00 0.00 0.00 2.01
2957 3059 6.854496 AACTACAACGATACTGCAAAGAAA 57.146 33.333 0.00 0.00 0.00 2.52
3045 3151 3.704061 TCCACTGTCCCTTTTCCTTTTTG 59.296 43.478 0.00 0.00 0.00 2.44
3093 3202 3.762288 AGACTAAACCGTCTGATACAGCA 59.238 43.478 0.00 0.00 42.39 4.41
3272 3381 9.770097 GAATATCAGTGATTCTTGATCTGGTAA 57.230 33.333 11.68 0.00 35.69 2.85
3295 3405 4.018960 ACAAGTATCTCCAGGCAACAGAAT 60.019 41.667 0.00 0.00 41.41 2.40
3307 3417 2.777692 TGGATGGGGAACAAGTATCTCC 59.222 50.000 0.00 0.00 37.99 3.71
3321 3431 0.690192 TACACTGTGTGGTGGATGGG 59.310 55.000 22.97 0.00 41.09 4.00
3351 3515 3.119424 ACACCGCCTTTTTCGAAAAGAAA 60.119 39.130 21.53 8.20 46.22 2.52
3352 3516 2.424246 ACACCGCCTTTTTCGAAAAGAA 59.576 40.909 21.53 8.89 37.01 2.52
3353 3517 2.018515 ACACCGCCTTTTTCGAAAAGA 58.981 42.857 21.53 12.70 0.00 2.52
3354 3518 2.485266 ACACCGCCTTTTTCGAAAAG 57.515 45.000 21.53 13.32 0.00 2.27
3355 3519 5.686159 TTATACACCGCCTTTTTCGAAAA 57.314 34.783 19.08 19.08 0.00 2.29
3356 3520 5.239087 ACTTTATACACCGCCTTTTTCGAAA 59.761 36.000 6.47 6.47 0.00 3.46
3357 3521 4.756135 ACTTTATACACCGCCTTTTTCGAA 59.244 37.500 0.00 0.00 0.00 3.71
3358 3522 4.317488 ACTTTATACACCGCCTTTTTCGA 58.683 39.130 0.00 0.00 0.00 3.71
3359 3523 4.673534 ACTTTATACACCGCCTTTTTCG 57.326 40.909 0.00 0.00 0.00 3.46
3360 3524 9.712359 CTAATAACTTTATACACCGCCTTTTTC 57.288 33.333 0.00 0.00 0.00 2.29
3361 3525 9.452287 TCTAATAACTTTATACACCGCCTTTTT 57.548 29.630 0.00 0.00 0.00 1.94
3362 3526 9.623000 ATCTAATAACTTTATACACCGCCTTTT 57.377 29.630 0.00 0.00 0.00 2.27
3363 3527 9.052759 CATCTAATAACTTTATACACCGCCTTT 57.947 33.333 0.00 0.00 0.00 3.11
3364 3528 8.426489 TCATCTAATAACTTTATACACCGCCTT 58.574 33.333 0.00 0.00 0.00 4.35
3365 3529 7.959175 TCATCTAATAACTTTATACACCGCCT 58.041 34.615 0.00 0.00 0.00 5.52
3366 3530 8.597662 TTCATCTAATAACTTTATACACCGCC 57.402 34.615 0.00 0.00 0.00 6.13
3380 3544 8.136800 TCTGCGTAACCGTTATTCATCTAATAA 58.863 33.333 0.00 0.00 34.83 1.40
3381 3545 7.650890 TCTGCGTAACCGTTATTCATCTAATA 58.349 34.615 0.00 0.00 36.15 0.98
3382 3546 6.509656 TCTGCGTAACCGTTATTCATCTAAT 58.490 36.000 0.00 0.00 36.15 1.73
3383 3547 5.893687 TCTGCGTAACCGTTATTCATCTAA 58.106 37.500 0.00 0.00 36.15 2.10
3425 3589 2.124403 CTGTCCATCAGGGGCTGC 60.124 66.667 0.00 0.00 43.75 5.25
3447 3611 1.003839 GCCCAGACATCAACACCGA 60.004 57.895 0.00 0.00 0.00 4.69
3471 3635 3.834799 AGTAGTGTAGCCCGGCGC 61.835 66.667 0.00 0.00 37.98 6.53
3477 3641 1.141234 GGCCGACAGTAGTGTAGCC 59.859 63.158 22.13 22.13 44.70 3.93
3505 3669 3.753797 GTCCAAGGAAAATGAGGTCTGAC 59.246 47.826 0.00 0.00 0.00 3.51
3506 3670 3.652869 AGTCCAAGGAAAATGAGGTCTGA 59.347 43.478 0.00 0.00 0.00 3.27
3507 3671 4.026356 AGTCCAAGGAAAATGAGGTCTG 57.974 45.455 0.00 0.00 0.00 3.51
3508 3672 4.507512 GGAAGTCCAAGGAAAATGAGGTCT 60.508 45.833 0.00 0.00 35.64 3.85
3509 3673 3.759086 GGAAGTCCAAGGAAAATGAGGTC 59.241 47.826 0.00 0.00 35.64 3.85
3510 3674 3.767711 GGAAGTCCAAGGAAAATGAGGT 58.232 45.455 0.00 0.00 35.64 3.85
3648 3812 3.769300 TGCTGGTAATTCACAGAGCTAGA 59.231 43.478 12.12 0.00 36.86 2.43
3660 3824 0.392998 CCGTCAGGCTGCTGGTAATT 60.393 55.000 10.34 0.00 0.00 1.40
3676 3840 2.925170 ACTTGCCTGCTCCTCCGT 60.925 61.111 0.00 0.00 0.00 4.69
3701 3865 2.743718 CCAAGCAGAGTCACCGGT 59.256 61.111 0.00 0.00 0.00 5.28
3714 3878 1.664151 GAACGATAAACTCCGGCCAAG 59.336 52.381 2.24 1.26 0.00 3.61
3805 3969 0.536460 GTTTCCTCCAGGCGGTTCAA 60.536 55.000 0.00 0.00 34.44 2.69
3838 4002 2.358369 AGCTCTCGTCGACACCGA 60.358 61.111 17.16 6.40 43.35 4.69
3930 4094 0.826715 TCTGCCCGATTCTCTTGAGG 59.173 55.000 0.00 0.00 0.00 3.86
3952 4116 1.337071 CATCCAGCAGTTCATCATGCC 59.663 52.381 0.00 0.00 43.60 4.40
3962 4126 0.107993 CCGTGTGATCATCCAGCAGT 60.108 55.000 0.00 0.00 0.00 4.40
3974 4138 1.227704 ATTGCCGTTGTCCGTGTGA 60.228 52.632 0.00 0.00 33.66 3.58
3988 4152 1.196354 GATGCTCGGCACTATCATTGC 59.804 52.381 0.50 0.00 43.04 3.56
4023 4187 1.138069 TGTCGTTGCAGAAGGTTCAGA 59.862 47.619 0.00 0.00 0.00 3.27
4065 4229 2.676176 CGGTGACAACATCAGAGCTCAT 60.676 50.000 17.77 0.00 38.28 2.90
4358 4522 2.620112 GCAGCTGTTGTGTCCGCAT 61.620 57.895 16.64 0.00 0.00 4.73
4365 4529 0.242017 GCTTTAGGGCAGCTGTTGTG 59.758 55.000 16.64 1.04 34.15 3.33
4580 4744 2.657237 CCCTCGAAGACGCACCTT 59.343 61.111 0.00 0.00 39.58 3.50
5276 5440 0.036732 GCAATGACAGGAGTCCACCA 59.963 55.000 12.86 6.29 44.33 4.17
5386 5550 9.567848 GCGAAAAGAAAGGATTGTATTAATCAA 57.432 29.630 0.00 0.00 0.00 2.57
5387 5551 8.735315 TGCGAAAAGAAAGGATTGTATTAATCA 58.265 29.630 0.00 0.00 0.00 2.57
5388 5552 9.567848 TTGCGAAAAGAAAGGATTGTATTAATC 57.432 29.630 0.00 0.00 0.00 1.75
5389 5553 9.921637 TTTGCGAAAAGAAAGGATTGTATTAAT 57.078 25.926 0.00 0.00 0.00 1.40
5390 5554 9.751542 TTTTGCGAAAAGAAAGGATTGTATTAA 57.248 25.926 0.00 0.00 0.00 1.40
5391 5555 9.751542 TTTTTGCGAAAAGAAAGGATTGTATTA 57.248 25.926 7.81 0.00 31.41 0.98
5392 5556 8.655651 TTTTTGCGAAAAGAAAGGATTGTATT 57.344 26.923 7.81 0.00 31.41 1.89
5591 5800 0.319297 AACGCGACCTACCAACTGAC 60.319 55.000 15.93 0.00 0.00 3.51
5625 5834 1.987855 GACCGGATGAGGTGGGACA 60.988 63.158 9.46 0.00 46.09 4.02
5657 5866 2.374170 GAGGTGGGAGGAAGTACCAAAA 59.626 50.000 0.00 0.00 42.04 2.44
5684 5893 4.985538 TTTTCTTGGTTTTTCACGGCTA 57.014 36.364 0.00 0.00 0.00 3.93
5805 6015 6.334202 ACCAGCGAAATAAAACAGTTGAAAA 58.666 32.000 0.00 0.00 0.00 2.29
6182 6396 4.662961 CACGTGCTGTCCTCGCCA 62.663 66.667 0.82 0.00 33.99 5.69
6224 6438 2.741092 GACAGACCCGAGGTGCAA 59.259 61.111 0.00 0.00 35.25 4.08
6318 6532 2.166459 AGAGCATGGACGAAATCGAGAA 59.834 45.455 10.16 0.00 43.02 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.