Multiple sequence alignment - TraesCS6B01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G226700 chr6B 100.000 6464 0 0 1 6464 348709257 348702794 0.000000e+00 11937
1 TraesCS6B01G226700 chr6B 93.405 652 14 2 5712 6363 348702165 348702787 0.000000e+00 939
2 TraesCS6B01G226700 chr6B 90.644 652 38 8 5712 6363 115438967 115438339 0.000000e+00 845
3 TraesCS6B01G226700 chr6B 89.571 652 45 8 5712 6363 115443350 115442722 0.000000e+00 806
4 TraesCS6B01G226700 chr6B 93.023 172 11 1 1745 1916 464866221 464866051 3.870000e-62 250
5 TraesCS6B01G226700 chr6B 97.872 94 2 0 6371 6464 115438239 115438332 5.190000e-36 163
6 TraesCS6B01G226700 chr6B 96.875 96 3 0 6369 6464 115442620 115442715 1.870000e-35 161
7 TraesCS6B01G226700 chr6D 96.695 3631 69 18 1907 5493 262268206 262271829 0.000000e+00 5993
8 TraesCS6B01G226700 chr6D 96.471 1757 49 6 1 1746 262266454 262268208 0.000000e+00 2889
9 TraesCS6B01G226700 chr6D 93.103 174 11 1 1744 1916 392278576 392278749 2.990000e-63 254
10 TraesCS6B01G226700 chr6D 92.982 171 12 0 1742 1912 206560271 206560441 3.870000e-62 250
11 TraesCS6B01G226700 chr6D 98.039 102 1 1 5613 5714 389249313 389249413 6.660000e-40 176
12 TraesCS6B01G226700 chr6D 98.039 102 1 1 5613 5714 389254108 389254208 6.660000e-40 176
13 TraesCS6B01G226700 chr6A 98.353 2064 28 4 1908 3970 323001120 322999062 0.000000e+00 3618
14 TraesCS6B01G226700 chr6A 93.273 1546 58 12 3969 5493 322998713 322997193 0.000000e+00 2237
15 TraesCS6B01G226700 chr6A 93.895 1163 30 13 619 1746 323002277 323001121 0.000000e+00 1716
16 TraesCS6B01G226700 chr6A 94.355 124 5 2 5489 5612 26886905 26887026 8.560000e-44 189
17 TraesCS6B01G226700 chr2B 94.334 653 20 5 5712 6363 717046906 717047542 0.000000e+00 985
18 TraesCS6B01G226700 chr2B 92.218 514 22 5 5712 6225 5054782 5055277 0.000000e+00 712
19 TraesCS6B01G226700 chr2B 95.518 357 14 2 5712 6068 381269412 381269058 2.620000e-158 569
20 TraesCS6B01G226700 chr2B 94.958 357 16 2 5712 6068 381273701 381273347 5.660000e-155 558
21 TraesCS6B01G226700 chr2B 89.722 360 21 3 6004 6363 5058691 5059034 4.600000e-121 446
22 TraesCS6B01G226700 chr2B 79.492 512 97 8 2641 3148 501007661 501008168 2.220000e-94 357
23 TraesCS6B01G226700 chr2B 96.639 119 4 0 5494 5612 5058422 5058540 1.420000e-46 198
24 TraesCS6B01G226700 chr2B 95.868 121 5 0 5492 5612 717046773 717046893 5.110000e-46 196
25 TraesCS6B01G226700 chr2B 94.400 125 7 0 5488 5612 321625643 321625519 6.610000e-45 193
26 TraesCS6B01G226700 chr2B 95.082 122 6 0 5491 5612 381273835 381273714 6.610000e-45 193
27 TraesCS6B01G226700 chr2B 97.872 94 2 0 6371 6464 717047642 717047549 5.190000e-36 163
28 TraesCS6B01G226700 chr2B 97.849 93 2 0 6372 6464 381272988 381273080 1.870000e-35 161
29 TraesCS6B01G226700 chr2B 96.774 93 3 0 6372 6464 5055583 5055491 8.680000e-34 156
30 TraesCS6B01G226700 chr7D 93.558 652 25 5 5712 6363 493546852 493546218 0.000000e+00 955
31 TraesCS6B01G226700 chr7D 91.871 652 25 6 5712 6363 493551279 493550656 0.000000e+00 885
32 TraesCS6B01G226700 chr7D 97.849 93 2 0 6372 6464 493546119 493546211 1.870000e-35 161
33 TraesCS6B01G226700 chr7D 97.849 93 2 0 6372 6464 493550557 493550649 1.870000e-35 161
34 TraesCS6B01G226700 chr5A 91.718 652 28 8 5712 6363 601344092 601344717 0.000000e+00 881
35 TraesCS6B01G226700 chr1B 91.411 652 27 9 5712 6363 624829866 624829244 0.000000e+00 867
36 TraesCS6B01G226700 chr1B 96.875 96 3 0 6369 6464 624829142 624829237 1.870000e-35 161
37 TraesCS6B01G226700 chr4B 91.104 652 36 9 5712 6363 636069544 636068915 0.000000e+00 863
38 TraesCS6B01G226700 chr4B 90.951 652 32 11 5712 6363 636073912 636073288 0.000000e+00 852
39 TraesCS6B01G226700 chr4B 96.842 95 3 0 6369 6463 636073186 636073280 6.710000e-35 159
40 TraesCS6B01G226700 chr4A 90.644 652 40 7 5712 6363 732492848 732493478 0.000000e+00 846
41 TraesCS6B01G226700 chr3B 95.067 446 21 1 2256 2701 666249102 666248658 0.000000e+00 701
42 TraesCS6B01G226700 chr2A 79.767 514 94 10 2641 3149 562604305 562603797 1.320000e-96 364
43 TraesCS6B01G226700 chr2D 79.532 513 95 10 2641 3148 425742025 425742532 2.220000e-94 357
44 TraesCS6B01G226700 chr2D 93.452 168 11 0 1745 1912 194458617 194458784 3.870000e-62 250
45 TraesCS6B01G226700 chr7B 92.697 178 11 2 1736 1911 423421485 423421662 8.320000e-64 255
46 TraesCS6B01G226700 chr7B 93.023 172 12 0 1745 1916 412800314 412800485 1.080000e-62 252
47 TraesCS6B01G226700 chr7B 93.701 127 6 2 5483 5609 591694163 591694287 8.560000e-44 189
48 TraesCS6B01G226700 chrUn 93.491 169 11 0 1745 1913 74119615 74119447 1.080000e-62 252
49 TraesCS6B01G226700 chrUn 98.039 102 1 1 5613 5714 453113626 453113726 6.660000e-40 176
50 TraesCS6B01G226700 chr1D 93.491 169 11 0 1744 1912 365727164 365727332 1.080000e-62 252
51 TraesCS6B01G226700 chr1D 98.039 102 1 1 5613 5714 51917318 51917218 6.660000e-40 176
52 TraesCS6B01G226700 chr5D 92.982 171 12 0 1744 1914 6083527 6083357 3.870000e-62 250
53 TraesCS6B01G226700 chr5D 98.039 102 1 1 5613 5714 503228187 503228287 6.660000e-40 176
54 TraesCS6B01G226700 chr5D 98.039 102 1 1 5613 5714 503237966 503238066 6.660000e-40 176
55 TraesCS6B01G226700 chr5D 98.039 102 1 1 5613 5714 503242214 503242314 6.660000e-40 176
56 TraesCS6B01G226700 chr5D 98.039 102 1 1 5613 5714 503268363 503268263 6.660000e-40 176
57 TraesCS6B01G226700 chr7A 96.639 119 3 1 5494 5612 731497305 731497188 5.110000e-46 196
58 TraesCS6B01G226700 chr7A 96.330 109 2 2 5606 5714 379930614 379930508 1.850000e-40 178
59 TraesCS6B01G226700 chr1A 95.833 120 4 1 5493 5612 196401910 196401792 6.610000e-45 193
60 TraesCS6B01G226700 chr3A 94.400 125 5 2 5494 5616 92631621 92631497 2.380000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G226700 chr6B 348702794 348709257 6463 True 11937.000000 11937 100.000000 1 6464 1 chr6B.!!$R1 6463
1 TraesCS6B01G226700 chr6B 348702165 348702787 622 False 939.000000 939 93.405000 5712 6363 1 chr6B.!!$F3 651
2 TraesCS6B01G226700 chr6B 115438339 115443350 5011 True 825.500000 845 90.107500 5712 6363 2 chr6B.!!$R3 651
3 TraesCS6B01G226700 chr6D 262266454 262271829 5375 False 4441.000000 5993 96.583000 1 5493 2 chr6D.!!$F5 5492
4 TraesCS6B01G226700 chr6A 322997193 323002277 5084 True 2523.666667 3618 95.173667 619 5493 3 chr6A.!!$R1 4874
5 TraesCS6B01G226700 chr2B 717046773 717047542 769 False 590.500000 985 95.101000 5492 6363 2 chr2B.!!$F4 871
6 TraesCS6B01G226700 chr2B 5054782 5059034 4252 False 452.000000 712 92.859667 5494 6363 3 chr2B.!!$F3 869
7 TraesCS6B01G226700 chr2B 381269058 381273835 4777 True 440.000000 569 95.186000 5491 6068 3 chr2B.!!$R4 577
8 TraesCS6B01G226700 chr2B 501007661 501008168 507 False 357.000000 357 79.492000 2641 3148 1 chr2B.!!$F2 507
9 TraesCS6B01G226700 chr7D 493546218 493551279 5061 True 920.000000 955 92.714500 5712 6363 2 chr7D.!!$R1 651
10 TraesCS6B01G226700 chr5A 601344092 601344717 625 False 881.000000 881 91.718000 5712 6363 1 chr5A.!!$F1 651
11 TraesCS6B01G226700 chr1B 624829244 624829866 622 True 867.000000 867 91.411000 5712 6363 1 chr1B.!!$R1 651
12 TraesCS6B01G226700 chr4B 636068915 636073912 4997 True 857.500000 863 91.027500 5712 6363 2 chr4B.!!$R1 651
13 TraesCS6B01G226700 chr4A 732492848 732493478 630 False 846.000000 846 90.644000 5712 6363 1 chr4A.!!$F1 651
14 TraesCS6B01G226700 chr2A 562603797 562604305 508 True 364.000000 364 79.767000 2641 3149 1 chr2A.!!$R1 508
15 TraesCS6B01G226700 chr2D 425742025 425742532 507 False 357.000000 357 79.532000 2641 3148 1 chr2D.!!$F2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 781 0.252881 TCTCCTGTTGGCCTCATCCT 60.253 55.000 3.32 0.0 0.00 3.24 F
1750 1787 0.042281 ACCACTACCCTGGTACTCCC 59.958 60.000 0.00 0.0 43.19 4.30 F
1759 1796 0.324460 CTGGTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.0 0.00 3.36 F
1760 1797 1.002069 TGGTACTCCCTCCGTTCCTA 58.998 55.000 0.00 0.0 0.00 2.94 F
1761 1798 1.358787 TGGTACTCCCTCCGTTCCTAA 59.641 52.381 0.00 0.0 0.00 2.69 F
2126 2163 1.812571 CCCTGCTTATTCGTTTGCTGT 59.187 47.619 0.00 0.0 0.00 4.40 F
3690 3735 2.263077 GTCACTACTGTTGCATCCTCG 58.737 52.381 0.00 0.0 0.00 4.63 F
4912 5324 0.037326 ACGCCACGTCACAGATCAAT 60.037 50.000 0.00 0.0 33.69 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 2477 0.164647 GCTCGCAGCACTGTAACAAG 59.835 55.000 0.00 0.00 41.89 3.16 R
3128 3165 1.689273 GACTCACCGATGGCCTCTAAT 59.311 52.381 3.32 0.00 0.00 1.73 R
3313 3350 6.543831 AGACAAGCCATGATCCAAACTAATAC 59.456 38.462 0.00 0.00 0.00 1.89 R
3780 3825 3.825014 AGACTGACTTACGCTTCAGGTTA 59.175 43.478 3.79 0.00 43.12 2.85 R
3869 3914 1.994074 TGCAATGAAATGATGCGCAAC 59.006 42.857 17.11 13.83 42.91 4.17 R
4145 4557 0.608640 ACGAGGGCAAGTAACTCCAG 59.391 55.000 0.00 0.00 0.00 3.86 R
5293 5730 0.236187 GATCGAGACGGAGACATCGG 59.764 60.000 0.00 0.00 35.91 4.18 R
6162 15412 0.111061 TGCACAAAGACAGAGGGCAT 59.889 50.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.614092 AGATGCATCCTACACAAACTGG 58.386 45.455 23.06 0.00 0.00 4.00
88 89 6.625520 GCATCATTCACATGTTTGTCACCATA 60.626 38.462 0.00 0.00 32.34 2.74
110 111 0.770499 TGACAACCTGAGGATTGCCA 59.230 50.000 4.99 1.98 36.29 4.92
121 122 0.532115 GGATTGCCAAACAGCCGAAT 59.468 50.000 0.00 0.00 0.00 3.34
123 124 2.262211 GATTGCCAAACAGCCGAATTC 58.738 47.619 0.00 0.00 0.00 2.17
135 136 1.602668 GCCGAATTCAACAAGCTGCAA 60.603 47.619 6.22 0.00 0.00 4.08
171 172 2.222007 TTTGTGTGGAAATGCAGCAC 57.778 45.000 0.00 0.00 0.00 4.40
265 266 2.280628 GAGGAAACTACCATGGAAGCG 58.719 52.381 21.47 5.78 44.43 4.68
329 330 3.883830 TCTTGATCTGCAGAGAAGGAC 57.116 47.619 26.53 14.00 0.00 3.85
333 334 1.478510 GATCTGCAGAGAAGGACGGAA 59.521 52.381 22.96 0.00 0.00 4.30
352 353 2.070861 GCAGGAAGCAACGTCTACG 58.929 57.895 0.04 0.04 44.79 3.51
353 354 0.388134 GCAGGAAGCAACGTCTACGA 60.388 55.000 9.86 0.00 44.79 3.43
366 367 3.008330 CGTCTACGAGAGGAAGAAAGGA 58.992 50.000 0.00 0.00 43.02 3.36
385 386 2.545731 GAAACGCCTGGAGAGAGAATC 58.454 52.381 3.87 0.00 0.00 2.52
386 387 1.561643 AACGCCTGGAGAGAGAATCA 58.438 50.000 3.87 0.00 37.82 2.57
392 393 2.363038 CCTGGAGAGAGAATCAGAGCTG 59.637 54.545 0.00 0.00 37.82 4.24
465 466 7.675962 TTTTAGCGAACTGAAAAGGCTAATA 57.324 32.000 4.82 0.00 43.36 0.98
480 481 3.489180 CTAATATAGCACGGGTCCTCG 57.511 52.381 0.00 0.00 0.00 4.63
495 496 1.145945 TCCTCGGGAGCATATCTGAGT 59.854 52.381 0.00 0.00 32.07 3.41
511 512 3.118371 TCTGAGTGCCATCGACTAGTCTA 60.118 47.826 20.34 10.49 0.00 2.59
515 516 5.238868 TGAGTGCCATCGACTAGTCTAATAC 59.761 44.000 20.34 11.29 0.00 1.89
568 569 6.131961 AGTGCTGCCCTTTATGAAAAGATAT 58.868 36.000 0.00 0.00 44.14 1.63
601 602 7.040494 GTGGTAGTAGGAGTAGGTTTTTGATC 58.960 42.308 0.00 0.00 0.00 2.92
658 660 7.668525 ATAGTGGTAGTTGCTGTAGTTTTTC 57.331 36.000 0.00 0.00 0.00 2.29
749 753 3.835790 TTTGACCACCTTCGCCCGG 62.836 63.158 0.00 0.00 0.00 5.73
777 781 0.252881 TCTCCTGTTGGCCTCATCCT 60.253 55.000 3.32 0.00 0.00 3.24
905 927 4.778415 TCGCTGGCTCGCTTCGAC 62.778 66.667 0.00 0.00 0.00 4.20
1186 1217 4.582869 TGATTCTGATCTGGGTTGACTTG 58.417 43.478 0.00 0.00 33.28 3.16
1749 1786 2.834638 TACCACTACCCTGGTACTCC 57.165 55.000 0.00 0.00 43.19 3.85
1750 1787 0.042281 ACCACTACCCTGGTACTCCC 59.958 60.000 0.00 0.00 43.19 4.30
1751 1788 0.338814 CCACTACCCTGGTACTCCCT 59.661 60.000 0.00 0.00 0.00 4.20
1752 1789 1.688627 CCACTACCCTGGTACTCCCTC 60.689 61.905 0.00 0.00 0.00 4.30
1753 1790 0.635555 ACTACCCTGGTACTCCCTCC 59.364 60.000 0.00 0.00 0.00 4.30
1754 1791 0.467659 CTACCCTGGTACTCCCTCCG 60.468 65.000 0.00 0.00 0.00 4.63
1755 1792 1.217057 TACCCTGGTACTCCCTCCGT 61.217 60.000 0.00 0.00 0.00 4.69
1756 1793 1.305887 CCCTGGTACTCCCTCCGTT 60.306 63.158 0.00 0.00 0.00 4.44
1757 1794 1.328430 CCCTGGTACTCCCTCCGTTC 61.328 65.000 0.00 0.00 0.00 3.95
1758 1795 1.328430 CCTGGTACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62
1759 1796 0.324460 CTGGTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
1760 1797 1.002069 TGGTACTCCCTCCGTTCCTA 58.998 55.000 0.00 0.00 0.00 2.94
1761 1798 1.358787 TGGTACTCCCTCCGTTCCTAA 59.641 52.381 0.00 0.00 0.00 2.69
1762 1799 2.225343 TGGTACTCCCTCCGTTCCTAAA 60.225 50.000 0.00 0.00 0.00 1.85
1763 1800 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
1764 1801 4.218312 GGTACTCCCTCCGTTCCTAAATA 58.782 47.826 0.00 0.00 0.00 1.40
1765 1802 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
1766 1803 5.306419 GGTACTCCCTCCGTTCCTAAATATT 59.694 44.000 0.00 0.00 0.00 1.28
1767 1804 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1768 1805 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1769 1806 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1770 1807 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1771 1808 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1772 1809 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1773 1810 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1774 1811 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1775 1812 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1776 1813 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1777 1814 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1778 1815 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1791 1828 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1792 1829 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1793 1830 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1794 1831 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1795 1832 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1796 1833 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1797 1834 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1798 1835 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1799 1836 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1801 1838 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1802 1839 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1803 1840 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
1804 1841 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
1805 1842 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
1806 1843 6.758593 TCAACAAGTGACTACATACGAAAC 57.241 37.500 0.00 0.00 0.00 2.78
1807 1844 6.274579 TCAACAAGTGACTACATACGAAACA 58.725 36.000 0.00 0.00 0.00 2.83
1808 1845 6.926826 TCAACAAGTGACTACATACGAAACAT 59.073 34.615 0.00 0.00 0.00 2.71
1809 1846 8.083462 TCAACAAGTGACTACATACGAAACATA 58.917 33.333 0.00 0.00 0.00 2.29
1810 1847 8.705134 CAACAAGTGACTACATACGAAACATAA 58.295 33.333 0.00 0.00 0.00 1.90
1811 1848 8.997621 ACAAGTGACTACATACGAAACATAAT 57.002 30.769 0.00 0.00 0.00 1.28
1846 1883 9.875675 CTACACTCTAAAATATGTCTACGTACC 57.124 37.037 0.00 0.00 0.00 3.34
1847 1884 8.517062 ACACTCTAAAATATGTCTACGTACCT 57.483 34.615 0.00 0.00 0.00 3.08
1848 1885 8.619546 ACACTCTAAAATATGTCTACGTACCTC 58.380 37.037 0.00 0.00 0.00 3.85
1849 1886 8.074972 CACTCTAAAATATGTCTACGTACCTCC 58.925 40.741 0.00 0.00 0.00 4.30
1850 1887 7.041508 ACTCTAAAATATGTCTACGTACCTCCG 60.042 40.741 0.00 0.00 0.00 4.63
1851 1888 5.841957 AAAATATGTCTACGTACCTCCGT 57.158 39.130 0.00 0.00 44.50 4.69
1852 1889 6.942532 AAAATATGTCTACGTACCTCCGTA 57.057 37.500 0.00 0.00 42.00 4.02
1853 1890 7.516198 AAAATATGTCTACGTACCTCCGTAT 57.484 36.000 0.00 0.00 41.95 3.06
1854 1891 6.492007 AATATGTCTACGTACCTCCGTATG 57.508 41.667 0.00 0.00 41.95 2.39
1855 1892 3.266510 TGTCTACGTACCTCCGTATGT 57.733 47.619 0.00 1.19 44.94 2.29
1856 1893 4.400529 TGTCTACGTACCTCCGTATGTA 57.599 45.455 0.00 3.14 41.87 2.29
1861 1898 3.347216 ACGTACCTCCGTATGTAGTTGT 58.653 45.455 0.00 0.00 41.87 3.32
1862 1899 3.375299 ACGTACCTCCGTATGTAGTTGTC 59.625 47.826 0.00 0.00 41.87 3.18
1863 1900 3.242870 CGTACCTCCGTATGTAGTTGTCC 60.243 52.174 0.00 0.00 0.00 4.02
1864 1901 2.811410 ACCTCCGTATGTAGTTGTCCA 58.189 47.619 0.00 0.00 0.00 4.02
1865 1902 3.371965 ACCTCCGTATGTAGTTGTCCAT 58.628 45.455 0.00 0.00 0.00 3.41
1866 1903 3.773119 ACCTCCGTATGTAGTTGTCCATT 59.227 43.478 0.00 0.00 0.00 3.16
1867 1904 4.224370 ACCTCCGTATGTAGTTGTCCATTT 59.776 41.667 0.00 0.00 0.00 2.32
1868 1905 4.570772 CCTCCGTATGTAGTTGTCCATTTG 59.429 45.833 0.00 0.00 0.00 2.32
1869 1906 5.408880 TCCGTATGTAGTTGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
1870 1907 5.795972 TCCGTATGTAGTTGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
1871 1908 6.231951 TCCGTATGTAGTTGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
1872 1909 6.882140 TCCGTATGTAGTTGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
1873 1910 6.966632 CCGTATGTAGTTGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
1874 1911 7.361713 CCGTATGTAGTTGTCCATTTGAAATGT 60.362 37.037 15.93 0.07 0.00 2.71
1875 1912 7.692291 CGTATGTAGTTGTCCATTTGAAATGTC 59.308 37.037 15.93 9.53 0.00 3.06
1876 1913 7.765695 ATGTAGTTGTCCATTTGAAATGTCT 57.234 32.000 15.93 8.79 0.00 3.41
1877 1914 8.862325 ATGTAGTTGTCCATTTGAAATGTCTA 57.138 30.769 15.93 8.00 0.00 2.59
1878 1915 8.322906 TGTAGTTGTCCATTTGAAATGTCTAG 57.677 34.615 15.93 1.90 0.00 2.43
1879 1916 8.154203 TGTAGTTGTCCATTTGAAATGTCTAGA 58.846 33.333 15.93 4.16 0.00 2.43
1880 1917 8.999431 GTAGTTGTCCATTTGAAATGTCTAGAA 58.001 33.333 15.93 4.41 0.00 2.10
1881 1918 8.463930 AGTTGTCCATTTGAAATGTCTAGAAA 57.536 30.769 15.93 0.00 0.00 2.52
1882 1919 8.571336 AGTTGTCCATTTGAAATGTCTAGAAAG 58.429 33.333 15.93 0.00 0.00 2.62
1883 1920 8.567948 GTTGTCCATTTGAAATGTCTAGAAAGA 58.432 33.333 15.93 1.84 0.00 2.52
1900 1937 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1901 1938 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1902 1939 8.857694 AGAAAGACAAATATTTAGGAACGGAA 57.142 30.769 0.00 0.00 0.00 4.30
1903 1940 8.947115 AGAAAGACAAATATTTAGGAACGGAAG 58.053 33.333 0.00 0.00 0.00 3.46
1904 1941 7.625828 AAGACAAATATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
1905 1942 6.954232 AGACAAATATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
1906 1943 7.048512 AGACAAATATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
1907 1944 6.718294 ACAAATATTTAGGAACGGAAGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
1908 1945 7.854337 ACAAATATTTAGGAACGGAAGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2126 2163 1.812571 CCCTGCTTATTCGTTTGCTGT 59.187 47.619 0.00 0.00 0.00 4.40
2440 2477 5.993441 TGCTTGTCTAACCCAAACTTACTAC 59.007 40.000 0.00 0.00 0.00 2.73
2633 2670 7.952671 TCTCTTATAGTCTGTCTTGTTTGTGT 58.047 34.615 0.00 0.00 0.00 3.72
2729 2766 2.631418 ACACGGTTGACTACATCTCG 57.369 50.000 0.00 0.00 0.00 4.04
2871 2908 6.962686 TCAATGCTGAAAAATCTATCATCCG 58.037 36.000 0.00 0.00 0.00 4.18
3128 3165 4.361783 TGACTGATTTCCCTATCACTCCA 58.638 43.478 0.00 0.00 31.51 3.86
3226 3263 3.365265 GCGGCCACTTTGTCAGGG 61.365 66.667 2.24 0.00 0.00 4.45
3313 3350 9.916397 GTATTCGTATATTTGAACAAGTTGGAG 57.084 33.333 7.96 0.00 0.00 3.86
3496 3541 2.268298 CCTCCGGACTTCACATTTACG 58.732 52.381 0.00 0.00 0.00 3.18
3690 3735 2.263077 GTCACTACTGTTGCATCCTCG 58.737 52.381 0.00 0.00 0.00 4.63
3780 3825 4.870636 TCACTTGGGAGGATATTGCAAAT 58.129 39.130 1.71 0.00 0.00 2.32
4136 4548 6.640499 TCAATCGTTTGGTGAAACAATTGATC 59.360 34.615 13.59 10.44 44.77 2.92
4145 4557 5.447818 GGTGAAACAATTGATCGTCCATCTC 60.448 44.000 13.59 0.00 39.98 2.75
4159 4571 2.501723 TCCATCTCTGGAGTTACTTGCC 59.498 50.000 0.00 0.00 46.95 4.52
4233 4645 2.302445 TCAAACCCATTTGGCCAGATTG 59.698 45.455 5.92 2.93 44.61 2.67
4337 4749 7.814264 AGATTTGTCAGGAATCATGATTACC 57.186 36.000 24.36 22.15 36.26 2.85
4375 4787 4.025813 GCATTTAAATATGCTGCAAACCCG 60.026 41.667 6.36 0.00 45.80 5.28
4438 4850 3.002791 TGAGTCGGCTAGCAAAAAGATG 58.997 45.455 18.24 0.00 0.00 2.90
4624 5036 2.223572 CCAGTCAACAAACAGCTCAACC 60.224 50.000 0.00 0.00 0.00 3.77
4717 5129 0.179089 CTTCCTCCCTCGCAGACATG 60.179 60.000 0.00 0.00 0.00 3.21
4774 5186 0.886563 CCGTTTACCCAGAGTCGAGT 59.113 55.000 0.00 0.00 0.00 4.18
4846 5258 2.500098 TGGCCTTCCAGTCTATGTGTAC 59.500 50.000 3.32 0.00 37.47 2.90
4873 5285 4.621991 TGAGGAACGAGTTCTTTTCTCAG 58.378 43.478 14.62 0.00 39.45 3.35
4912 5324 0.037326 ACGCCACGTCACAGATCAAT 60.037 50.000 0.00 0.00 33.69 2.57
5036 5448 6.426633 CCTTTGTAACCAACATTTTTCATCCC 59.573 38.462 0.00 0.00 38.10 3.85
5047 5459 1.832883 TTTCATCCCGTTCACCATGG 58.167 50.000 11.19 11.19 0.00 3.66
5048 5460 0.695924 TTCATCCCGTTCACCATGGT 59.304 50.000 13.00 13.00 0.00 3.55
5049 5461 1.574263 TCATCCCGTTCACCATGGTA 58.426 50.000 19.28 0.00 0.00 3.25
5050 5462 1.208535 TCATCCCGTTCACCATGGTAC 59.791 52.381 19.28 12.62 0.00 3.34
5324 5761 0.751643 TCTCGATCCCGATCACTGCA 60.752 55.000 5.59 0.00 44.62 4.41
5364 5801 3.550639 CGCTTCTCTGCTTATCTGAGGAG 60.551 52.174 0.00 0.00 44.71 3.69
5370 5808 4.281657 TCTGCTTATCTGAGGAGCACTAA 58.718 43.478 12.11 1.64 41.15 2.24
5471 5913 4.522789 GTGGTGGATGTTGAGGTTAAATGT 59.477 41.667 0.00 0.00 0.00 2.71
5472 5914 5.010617 GTGGTGGATGTTGAGGTTAAATGTT 59.989 40.000 0.00 0.00 0.00 2.71
5473 5915 5.010516 TGGTGGATGTTGAGGTTAAATGTTG 59.989 40.000 0.00 0.00 0.00 3.33
5474 5916 5.469479 GTGGATGTTGAGGTTAAATGTTGG 58.531 41.667 0.00 0.00 0.00 3.77
5510 5952 1.434188 TGTGATGTGAACTGGGGACT 58.566 50.000 0.00 0.00 0.00 3.85
5511 5953 1.774254 TGTGATGTGAACTGGGGACTT 59.226 47.619 0.00 0.00 0.00 3.01
5553 5995 3.732048 AACTACGATTTTGGGTGGGAT 57.268 42.857 0.00 0.00 0.00 3.85
5593 6035 3.369157 GCTACCAACCGTACAGGAAGAAT 60.369 47.826 10.17 0.00 45.00 2.40
5615 6057 2.604855 CGTACACGACTGATATCCTGGC 60.605 54.545 0.00 0.00 43.02 4.85
5617 6059 4.251760 CGACTGATATCCTGGCGC 57.748 61.111 0.00 0.00 38.38 6.53
5619 6061 0.249447 CGACTGATATCCTGGCGCAA 60.249 55.000 10.83 0.00 38.38 4.85
5620 6062 1.506493 GACTGATATCCTGGCGCAAG 58.494 55.000 10.83 7.50 43.44 4.01
5621 6063 1.069204 GACTGATATCCTGGCGCAAGA 59.931 52.381 15.12 4.25 43.02 3.02
5622 6064 1.486310 ACTGATATCCTGGCGCAAGAA 59.514 47.619 15.12 0.00 43.02 2.52
5623 6065 2.141517 CTGATATCCTGGCGCAAGAAG 58.858 52.381 15.12 2.21 43.02 2.85
5624 6066 1.762370 TGATATCCTGGCGCAAGAAGA 59.238 47.619 15.12 2.78 43.02 2.87
5625 6067 2.170397 TGATATCCTGGCGCAAGAAGAA 59.830 45.455 15.12 0.00 43.02 2.52
5626 6068 2.315925 TATCCTGGCGCAAGAAGAAG 57.684 50.000 15.12 0.00 43.02 2.85
5627 6069 0.393537 ATCCTGGCGCAAGAAGAAGG 60.394 55.000 15.12 5.88 43.02 3.46
5628 6070 2.042831 CCTGGCGCAAGAAGAAGGG 61.043 63.158 15.12 0.00 43.02 3.95
5629 6071 2.034066 TGGCGCAAGAAGAAGGGG 59.966 61.111 10.83 0.00 43.02 4.79
5630 6072 3.443925 GGCGCAAGAAGAAGGGGC 61.444 66.667 10.83 0.00 43.02 5.80
5633 6075 3.579685 GCAAGAAGAAGGGGCGAC 58.420 61.111 0.00 0.00 0.00 5.19
5647 6089 2.839486 GGCGACCCATATCATCTTGA 57.161 50.000 0.00 0.00 0.00 3.02
5648 6090 2.417719 GGCGACCCATATCATCTTGAC 58.582 52.381 0.00 0.00 0.00 3.18
5649 6091 2.037772 GGCGACCCATATCATCTTGACT 59.962 50.000 0.00 0.00 0.00 3.41
5650 6092 3.495100 GGCGACCCATATCATCTTGACTT 60.495 47.826 0.00 0.00 0.00 3.01
5651 6093 3.496130 GCGACCCATATCATCTTGACTTG 59.504 47.826 0.00 0.00 0.00 3.16
5652 6094 4.060900 CGACCCATATCATCTTGACTTGG 58.939 47.826 2.16 2.16 33.73 3.61
5653 6095 4.443457 CGACCCATATCATCTTGACTTGGT 60.443 45.833 6.74 0.00 32.67 3.67
5654 6096 5.440610 GACCCATATCATCTTGACTTGGTT 58.559 41.667 6.74 0.00 32.67 3.67
5655 6097 5.831103 ACCCATATCATCTTGACTTGGTTT 58.169 37.500 6.74 0.00 32.67 3.27
5656 6098 6.256053 ACCCATATCATCTTGACTTGGTTTT 58.744 36.000 6.74 0.00 32.67 2.43
5657 6099 6.153340 ACCCATATCATCTTGACTTGGTTTTG 59.847 38.462 6.74 0.00 32.67 2.44
5658 6100 6.038356 CCATATCATCTTGACTTGGTTTTGC 58.962 40.000 0.00 0.00 30.98 3.68
5659 6101 6.127535 CCATATCATCTTGACTTGGTTTTGCT 60.128 38.462 0.00 0.00 30.98 3.91
5660 6102 5.796424 ATCATCTTGACTTGGTTTTGCTT 57.204 34.783 0.00 0.00 0.00 3.91
5661 6103 5.186996 TCATCTTGACTTGGTTTTGCTTC 57.813 39.130 0.00 0.00 0.00 3.86
5662 6104 4.037923 TCATCTTGACTTGGTTTTGCTTCC 59.962 41.667 0.00 0.00 0.00 3.46
5663 6105 2.693074 TCTTGACTTGGTTTTGCTTCCC 59.307 45.455 0.00 0.00 0.00 3.97
5664 6106 1.408969 TGACTTGGTTTTGCTTCCCC 58.591 50.000 0.00 0.00 0.00 4.81
5665 6107 1.063266 TGACTTGGTTTTGCTTCCCCT 60.063 47.619 0.00 0.00 0.00 4.79
5666 6108 1.613925 GACTTGGTTTTGCTTCCCCTC 59.386 52.381 0.00 0.00 0.00 4.30
5667 6109 1.217942 ACTTGGTTTTGCTTCCCCTCT 59.782 47.619 0.00 0.00 0.00 3.69
5668 6110 2.319844 CTTGGTTTTGCTTCCCCTCTT 58.680 47.619 0.00 0.00 0.00 2.85
5669 6111 2.470057 TGGTTTTGCTTCCCCTCTTT 57.530 45.000 0.00 0.00 0.00 2.52
5670 6112 2.758130 TGGTTTTGCTTCCCCTCTTTT 58.242 42.857 0.00 0.00 0.00 2.27
5671 6113 3.111484 TGGTTTTGCTTCCCCTCTTTTT 58.889 40.909 0.00 0.00 0.00 1.94
5699 6141 1.511768 CCGAGTCGGGTTCTTCTCC 59.488 63.158 24.39 0.00 44.15 3.71
5700 6142 0.966370 CCGAGTCGGGTTCTTCTCCT 60.966 60.000 24.39 0.00 44.15 3.69
5701 6143 1.681166 CCGAGTCGGGTTCTTCTCCTA 60.681 57.143 24.39 0.00 44.15 2.94
5702 6144 1.401199 CGAGTCGGGTTCTTCTCCTAC 59.599 57.143 4.10 0.00 0.00 3.18
5703 6145 1.750206 GAGTCGGGTTCTTCTCCTACC 59.250 57.143 0.00 0.00 0.00 3.18
5704 6146 1.076677 AGTCGGGTTCTTCTCCTACCA 59.923 52.381 0.00 0.00 33.51 3.25
5705 6147 1.477295 GTCGGGTTCTTCTCCTACCAG 59.523 57.143 0.00 0.00 33.51 4.00
5706 6148 1.076677 TCGGGTTCTTCTCCTACCAGT 59.923 52.381 0.00 0.00 33.51 4.00
5707 6149 2.309755 TCGGGTTCTTCTCCTACCAGTA 59.690 50.000 0.00 0.00 33.51 2.74
5708 6150 3.053095 TCGGGTTCTTCTCCTACCAGTAT 60.053 47.826 0.00 0.00 33.51 2.12
5709 6151 3.318557 CGGGTTCTTCTCCTACCAGTATC 59.681 52.174 0.00 0.00 33.51 2.24
5710 6152 3.642377 GGGTTCTTCTCCTACCAGTATCC 59.358 52.174 0.00 0.00 33.51 2.59
5761 10630 2.050351 CGGCGCGATCGACCTATT 60.050 61.111 21.57 0.00 41.73 1.73
5872 15122 5.893824 GGATTAATCTCACAAGATGGGGTTT 59.106 40.000 14.95 0.00 41.54 3.27
5887 15137 6.389869 AGATGGGGTTTCAATAGGATGTCTTA 59.610 38.462 0.00 0.00 0.00 2.10
6094 15344 4.468689 GGGCCCACGTGTAGAGGC 62.469 72.222 19.95 21.20 40.45 4.70
6162 15412 1.118965 TCCAAGTGCTTCGGTCCTGA 61.119 55.000 0.00 0.00 0.00 3.86
6174 15424 0.980231 GGTCCTGATGCCCTCTGTCT 60.980 60.000 0.00 0.00 0.00 3.41
6302 19995 3.007506 TCCTCATTTTCACACGGCTCTTA 59.992 43.478 0.00 0.00 0.00 2.10
6339 23583 9.941664 CTGGTATTCTGCATACAATAAAAGAAG 57.058 33.333 0.17 0.00 39.86 2.85
6363 23607 6.606395 AGGTGTTGTATTTCTACTCCGAGTAT 59.394 38.462 8.73 0.00 39.25 2.12
6364 23608 7.123847 AGGTGTTGTATTTCTACTCCGAGTATT 59.876 37.037 8.73 0.00 39.25 1.89
6365 23609 7.763071 GGTGTTGTATTTCTACTCCGAGTATTT 59.237 37.037 8.73 0.00 29.08 1.40
6366 23610 8.592998 GTGTTGTATTTCTACTCCGAGTATTTG 58.407 37.037 8.73 0.00 29.08 2.32
6367 23611 7.762615 TGTTGTATTTCTACTCCGAGTATTTGG 59.237 37.037 8.73 0.00 29.08 3.28
6368 23612 7.414222 TGTATTTCTACTCCGAGTATTTGGT 57.586 36.000 8.73 0.00 29.08 3.67
6369 23613 7.262772 TGTATTTCTACTCCGAGTATTTGGTG 58.737 38.462 8.73 0.00 29.08 4.17
6370 23614 5.733620 TTTCTACTCCGAGTATTTGGTGT 57.266 39.130 8.73 4.78 38.04 4.16
6371 23615 5.733620 TTCTACTCCGAGTATTTGGTGTT 57.266 39.130 8.73 0.00 36.30 3.32
6372 23616 5.068234 TCTACTCCGAGTATTTGGTGTTG 57.932 43.478 8.73 3.76 36.30 3.33
6373 23617 4.768448 TCTACTCCGAGTATTTGGTGTTGA 59.232 41.667 8.73 5.82 36.30 3.18
6374 23618 4.553330 ACTCCGAGTATTTGGTGTTGAT 57.447 40.909 0.00 0.00 31.88 2.57
6375 23619 4.253685 ACTCCGAGTATTTGGTGTTGATG 58.746 43.478 0.00 0.00 31.88 3.07
6376 23620 4.253685 CTCCGAGTATTTGGTGTTGATGT 58.746 43.478 0.00 0.00 0.00 3.06
6377 23621 4.000325 TCCGAGTATTTGGTGTTGATGTG 59.000 43.478 0.00 0.00 0.00 3.21
6378 23622 3.126858 CCGAGTATTTGGTGTTGATGTGG 59.873 47.826 0.00 0.00 0.00 4.17
6379 23623 4.000325 CGAGTATTTGGTGTTGATGTGGA 59.000 43.478 0.00 0.00 0.00 4.02
6380 23624 4.142902 CGAGTATTTGGTGTTGATGTGGAC 60.143 45.833 0.00 0.00 0.00 4.02
6381 23625 4.724399 AGTATTTGGTGTTGATGTGGACA 58.276 39.130 0.00 0.00 0.00 4.02
6382 23626 5.324409 AGTATTTGGTGTTGATGTGGACAT 58.676 37.500 0.00 0.00 39.70 3.06
6383 23627 6.480763 AGTATTTGGTGTTGATGTGGACATA 58.519 36.000 0.00 0.00 36.57 2.29
6384 23628 5.902613 ATTTGGTGTTGATGTGGACATAG 57.097 39.130 0.00 0.00 36.57 2.23
6385 23629 2.710377 TGGTGTTGATGTGGACATAGC 58.290 47.619 0.00 0.00 36.57 2.97
6386 23630 2.017049 GGTGTTGATGTGGACATAGCC 58.983 52.381 0.00 0.00 36.57 3.93
6387 23631 2.356125 GGTGTTGATGTGGACATAGCCT 60.356 50.000 0.00 0.00 36.57 4.58
6388 23632 2.939103 GTGTTGATGTGGACATAGCCTC 59.061 50.000 0.00 0.00 36.57 4.70
6389 23633 2.092968 TGTTGATGTGGACATAGCCTCC 60.093 50.000 0.00 0.00 36.57 4.30
6390 23634 1.878211 TGATGTGGACATAGCCTCCA 58.122 50.000 0.00 0.00 36.57 3.86
6391 23635 2.411583 TGATGTGGACATAGCCTCCAT 58.588 47.619 0.00 0.00 40.04 3.41
6392 23636 2.369860 TGATGTGGACATAGCCTCCATC 59.630 50.000 0.00 0.00 40.04 3.51
6393 23637 0.752658 TGTGGACATAGCCTCCATCG 59.247 55.000 0.00 0.00 40.04 3.84
6394 23638 1.040646 GTGGACATAGCCTCCATCGA 58.959 55.000 0.00 0.00 40.04 3.59
6395 23639 1.620819 GTGGACATAGCCTCCATCGAT 59.379 52.381 0.00 0.00 40.04 3.59
6396 23640 1.620323 TGGACATAGCCTCCATCGATG 59.380 52.381 18.76 18.76 32.52 3.84
6397 23641 1.895798 GGACATAGCCTCCATCGATGA 59.104 52.381 26.86 11.61 0.00 2.92
6398 23642 2.094286 GGACATAGCCTCCATCGATGAG 60.094 54.545 26.86 19.45 0.00 2.90
6399 23643 2.822561 GACATAGCCTCCATCGATGAGA 59.177 50.000 26.86 19.18 0.00 3.27
6400 23644 2.560542 ACATAGCCTCCATCGATGAGAC 59.439 50.000 26.86 13.74 0.00 3.36
6401 23645 1.621992 TAGCCTCCATCGATGAGACC 58.378 55.000 26.86 11.71 0.00 3.85
6402 23646 0.397675 AGCCTCCATCGATGAGACCA 60.398 55.000 26.86 4.14 0.00 4.02
6403 23647 0.465705 GCCTCCATCGATGAGACCAA 59.534 55.000 26.86 4.03 0.00 3.67
6404 23648 1.134401 GCCTCCATCGATGAGACCAAA 60.134 52.381 26.86 2.38 0.00 3.28
6405 23649 2.680805 GCCTCCATCGATGAGACCAAAA 60.681 50.000 26.86 0.00 0.00 2.44
6406 23650 3.609853 CCTCCATCGATGAGACCAAAAA 58.390 45.455 26.86 0.00 0.00 1.94
6407 23651 4.202441 CCTCCATCGATGAGACCAAAAAT 58.798 43.478 26.86 0.00 0.00 1.82
6408 23652 5.368145 CCTCCATCGATGAGACCAAAAATA 58.632 41.667 26.86 0.00 0.00 1.40
6409 23653 6.000219 CCTCCATCGATGAGACCAAAAATAT 59.000 40.000 26.86 0.00 0.00 1.28
6410 23654 6.488006 CCTCCATCGATGAGACCAAAAATATT 59.512 38.462 26.86 0.00 0.00 1.28
6411 23655 7.661437 CCTCCATCGATGAGACCAAAAATATTA 59.339 37.037 26.86 0.00 0.00 0.98
6412 23656 9.224267 CTCCATCGATGAGACCAAAAATATTAT 57.776 33.333 26.86 0.00 0.00 1.28
6413 23657 9.219603 TCCATCGATGAGACCAAAAATATTATC 57.780 33.333 26.86 0.00 0.00 1.75
6414 23658 8.454106 CCATCGATGAGACCAAAAATATTATCC 58.546 37.037 26.86 0.00 0.00 2.59
6415 23659 9.224267 CATCGATGAGACCAAAAATATTATCCT 57.776 33.333 21.02 0.00 0.00 3.24
6416 23660 8.833231 TCGATGAGACCAAAAATATTATCCTC 57.167 34.615 0.00 0.00 0.00 3.71
6417 23661 8.428852 TCGATGAGACCAAAAATATTATCCTCA 58.571 33.333 0.00 0.00 33.44 3.86
6418 23662 9.224267 CGATGAGACCAAAAATATTATCCTCAT 57.776 33.333 0.00 0.00 40.32 2.90
6439 23683 9.388506 CCTCATATACAATAATCAGGTGATTCC 57.611 37.037 8.49 0.00 43.17 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.922240 GGTGACAAACATGTGAATGATGC 59.078 43.478 0.00 0.00 0.00 3.91
88 89 2.508526 GCAATCCTCAGGTTGTCAACT 58.491 47.619 15.17 0.00 0.00 3.16
110 111 2.362077 AGCTTGTTGAATTCGGCTGTTT 59.638 40.909 0.04 0.00 0.00 2.83
121 122 2.754552 AGAAGTGTTGCAGCTTGTTGAA 59.245 40.909 1.17 0.00 0.00 2.69
123 124 2.855963 CAAGAAGTGTTGCAGCTTGTTG 59.144 45.455 16.77 16.77 38.80 3.33
171 172 4.859798 CAGTAGTTCGGAAGTAGCAAGAAG 59.140 45.833 5.55 0.00 0.00 2.85
180 181 0.608640 CCTGGCAGTAGTTCGGAAGT 59.391 55.000 14.43 3.23 0.00 3.01
265 266 5.121221 AGATTGATTTGACGTTGTTTCCC 57.879 39.130 0.00 0.00 0.00 3.97
321 322 0.608640 TTCCTGCTTCCGTCCTTCTC 59.391 55.000 0.00 0.00 0.00 2.87
329 330 1.901650 GACGTTGCTTCCTGCTTCCG 61.902 60.000 0.00 0.00 43.37 4.30
333 334 0.388649 CGTAGACGTTGCTTCCTGCT 60.389 55.000 0.00 0.00 37.28 4.24
348 349 4.167268 CGTTTCCTTTCTTCCTCTCGTAG 58.833 47.826 0.00 0.00 0.00 3.51
352 353 2.077627 GGCGTTTCCTTTCTTCCTCTC 58.922 52.381 0.00 0.00 0.00 3.20
353 354 1.700186 AGGCGTTTCCTTTCTTCCTCT 59.300 47.619 0.00 0.00 44.75 3.69
366 367 1.902508 TGATTCTCTCTCCAGGCGTTT 59.097 47.619 0.00 0.00 0.00 3.60
385 386 0.392336 GCCCTCCACTATCAGCTCTG 59.608 60.000 0.00 0.00 0.00 3.35
386 387 1.112315 CGCCCTCCACTATCAGCTCT 61.112 60.000 0.00 0.00 0.00 4.09
392 393 1.000283 CATCTCACGCCCTCCACTATC 60.000 57.143 0.00 0.00 0.00 2.08
419 420 3.278367 TGAGTCCTTCGTTCGTAACTG 57.722 47.619 0.00 0.00 0.00 3.16
422 423 6.128742 GCTAAAATTGAGTCCTTCGTTCGTAA 60.129 38.462 0.00 0.00 0.00 3.18
427 428 4.312443 TCGCTAAAATTGAGTCCTTCGTT 58.688 39.130 0.00 0.00 0.00 3.85
465 466 2.838225 CCCGAGGACCCGTGCTAT 60.838 66.667 0.00 0.00 0.00 2.97
470 471 2.658321 ATATGCTCCCGAGGACCCGT 62.658 60.000 0.00 0.00 0.00 5.28
480 481 0.761187 TGGCACTCAGATATGCTCCC 59.239 55.000 6.73 0.00 41.74 4.30
491 492 2.130272 AGACTAGTCGATGGCACTCA 57.870 50.000 17.07 0.00 34.09 3.41
495 496 4.383173 TCGTATTAGACTAGTCGATGGCA 58.617 43.478 17.07 0.00 34.09 4.92
528 529 3.085533 AGCACTAGACATCAGACGTCTT 58.914 45.455 17.26 0.01 40.89 3.01
568 569 7.416731 ACCTACTCCTACTACCACTTTTATCA 58.583 38.462 0.00 0.00 0.00 2.15
613 614 9.226606 CACTATTAACTGGTGATCAAAACCTTA 57.773 33.333 0.00 0.00 38.56 2.69
615 616 6.659242 CCACTATTAACTGGTGATCAAAACCT 59.341 38.462 0.00 0.00 38.56 3.50
617 618 7.448748 ACCACTATTAACTGGTGATCAAAAC 57.551 36.000 0.00 0.00 39.44 2.43
749 753 0.890996 CCAACAGGAGAAGGTGGCAC 60.891 60.000 9.70 9.70 0.00 5.01
777 781 2.267006 GGCTGCTGCTGAGCTGTA 59.733 61.111 15.64 7.54 46.39 2.74
905 927 3.131046 GCAAGAGGAGAGAAGGAGAAGAG 59.869 52.174 0.00 0.00 0.00 2.85
1186 1217 6.256757 AGCTTATGAACTAAGAATCGCAGAAC 59.743 38.462 0.00 0.00 38.92 3.01
1380 1411 9.820725 CAAATAATTTAAAAGGAGGCATCATGA 57.179 29.630 0.00 0.00 0.00 3.07
1746 1783 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1747 1784 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1748 1785 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1749 1786 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1750 1787 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1751 1788 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1752 1789 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1765 1802 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1766 1803 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1767 1804 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1768 1805 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1769 1806 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1770 1807 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1771 1808 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1772 1809 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1773 1810 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1774 1811 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1775 1812 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1776 1813 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1777 1814 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
1778 1815 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
1779 1816 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
1780 1817 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
1781 1818 7.278203 TGTTTCGTATGTAGTCACTTGTTGAAA 59.722 33.333 0.00 0.00 35.39 2.69
1782 1819 6.757478 TGTTTCGTATGTAGTCACTTGTTGAA 59.243 34.615 0.00 0.00 35.39 2.69
1783 1820 6.274579 TGTTTCGTATGTAGTCACTTGTTGA 58.725 36.000 0.00 0.00 0.00 3.18
1784 1821 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
1785 1822 8.821147 TTATGTTTCGTATGTAGTCACTTGTT 57.179 30.769 0.00 0.00 0.00 2.83
1786 1823 8.997621 ATTATGTTTCGTATGTAGTCACTTGT 57.002 30.769 0.00 0.00 0.00 3.16
1800 1837 9.871238 AGTGTAGATTCACTTATTATGTTTCGT 57.129 29.630 0.00 0.00 44.92 3.85
1820 1857 9.875675 GGTACGTAGACATATTTTAGAGTGTAG 57.124 37.037 0.00 0.00 0.00 2.74
1821 1858 9.618890 AGGTACGTAGACATATTTTAGAGTGTA 57.381 33.333 0.00 0.00 0.00 2.90
1822 1859 8.517062 AGGTACGTAGACATATTTTAGAGTGT 57.483 34.615 0.00 0.00 0.00 3.55
1823 1860 8.074972 GGAGGTACGTAGACATATTTTAGAGTG 58.925 40.741 0.00 0.00 0.00 3.51
1824 1861 7.041508 CGGAGGTACGTAGACATATTTTAGAGT 60.042 40.741 0.00 0.00 0.00 3.24
1825 1862 7.041508 ACGGAGGTACGTAGACATATTTTAGAG 60.042 40.741 0.00 0.00 46.58 2.43
1826 1863 6.767902 ACGGAGGTACGTAGACATATTTTAGA 59.232 38.462 0.00 0.00 46.58 2.10
1827 1864 6.963796 ACGGAGGTACGTAGACATATTTTAG 58.036 40.000 0.00 0.00 46.58 1.85
1828 1865 6.942532 ACGGAGGTACGTAGACATATTTTA 57.057 37.500 0.00 0.00 46.58 1.52
1829 1866 5.841957 ACGGAGGTACGTAGACATATTTT 57.158 39.130 0.00 0.00 46.58 1.82
1841 1878 3.242870 GGACAACTACATACGGAGGTACG 60.243 52.174 0.00 0.00 40.31 3.67
1842 1879 3.696051 TGGACAACTACATACGGAGGTAC 59.304 47.826 0.00 0.00 0.00 3.34
1843 1880 3.966979 TGGACAACTACATACGGAGGTA 58.033 45.455 0.00 0.00 0.00 3.08
1844 1881 2.811410 TGGACAACTACATACGGAGGT 58.189 47.619 0.00 0.00 0.00 3.85
1845 1882 4.402056 AATGGACAACTACATACGGAGG 57.598 45.455 0.00 0.00 0.00 4.30
1846 1883 5.416083 TCAAATGGACAACTACATACGGAG 58.584 41.667 0.00 0.00 0.00 4.63
1847 1884 5.408880 TCAAATGGACAACTACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
1848 1885 6.489127 TTTCAAATGGACAACTACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
1849 1886 7.526608 ACATTTCAAATGGACAACTACATACG 58.473 34.615 14.70 0.00 0.00 3.06
1850 1887 8.730680 AGACATTTCAAATGGACAACTACATAC 58.269 33.333 14.70 0.00 0.00 2.39
1851 1888 8.862325 AGACATTTCAAATGGACAACTACATA 57.138 30.769 14.70 0.00 0.00 2.29
1852 1889 7.765695 AGACATTTCAAATGGACAACTACAT 57.234 32.000 14.70 0.00 0.00 2.29
1853 1890 8.154203 TCTAGACATTTCAAATGGACAACTACA 58.846 33.333 14.70 0.00 0.00 2.74
1854 1891 8.547967 TCTAGACATTTCAAATGGACAACTAC 57.452 34.615 14.70 0.00 0.00 2.73
1855 1892 9.567776 TTTCTAGACATTTCAAATGGACAACTA 57.432 29.630 14.70 8.42 0.00 2.24
1856 1893 8.463930 TTTCTAGACATTTCAAATGGACAACT 57.536 30.769 14.70 7.81 0.00 3.16
1857 1894 8.567948 TCTTTCTAGACATTTCAAATGGACAAC 58.432 33.333 14.70 1.26 0.00 3.32
1858 1895 8.690203 TCTTTCTAGACATTTCAAATGGACAA 57.310 30.769 14.70 0.00 0.00 3.18
1874 1911 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1875 1912 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1876 1913 9.947433 TTCCGTTCCTAAATATTTGTCTTTCTA 57.053 29.630 11.05 0.00 0.00 2.10
1877 1914 8.857694 TTCCGTTCCTAAATATTTGTCTTTCT 57.142 30.769 11.05 0.00 0.00 2.52
1878 1915 8.182227 CCTTCCGTTCCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
1879 1916 7.886446 TCCTTCCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
1880 1917 7.399634 TCCTTCCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
1881 1918 6.954232 TCCTTCCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
1882 1919 6.822170 ACTCCTTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
1883 1920 6.718294 ACTCCTTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
1884 1921 7.985752 ACTACTCCTTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
1885 1922 8.087303 ACTACTCCTTCCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
1886 1923 7.672122 ACTACTCCTTCCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
1887 1924 7.672122 AACTACTCCTTCCGTTCCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
1888 1925 7.486407 AAACTACTCCTTCCGTTCCTAAATA 57.514 36.000 0.00 0.00 0.00 1.40
1889 1926 6.370186 AAACTACTCCTTCCGTTCCTAAAT 57.630 37.500 0.00 0.00 0.00 1.40
1890 1927 5.813513 AAACTACTCCTTCCGTTCCTAAA 57.186 39.130 0.00 0.00 0.00 1.85
1891 1928 5.813513 AAAACTACTCCTTCCGTTCCTAA 57.186 39.130 0.00 0.00 0.00 2.69
1892 1929 5.813513 AAAAACTACTCCTTCCGTTCCTA 57.186 39.130 0.00 0.00 0.00 2.94
1893 1930 4.701651 AAAAACTACTCCTTCCGTTCCT 57.298 40.909 0.00 0.00 0.00 3.36
2126 2163 1.409241 GGGCTGAATCCTGATTGCTGA 60.409 52.381 0.00 0.00 0.00 4.26
2440 2477 0.164647 GCTCGCAGCACTGTAACAAG 59.835 55.000 0.00 0.00 41.89 3.16
2633 2670 6.989759 TGTAGAAACTGTCATGCTGAGTTTTA 59.010 34.615 14.14 8.55 33.53 1.52
2729 2766 1.700186 AGGAAACTCACTTCAGGGGAC 59.300 52.381 0.00 0.00 32.90 4.46
2871 2908 4.900635 TTCCAGAAGCAAAAGTCTTGAC 57.099 40.909 0.00 0.00 0.00 3.18
3128 3165 1.689273 GACTCACCGATGGCCTCTAAT 59.311 52.381 3.32 0.00 0.00 1.73
3226 3263 9.286946 CAGAGTCAATAAAAGATGAAAGATTGC 57.713 33.333 0.00 0.00 0.00 3.56
3313 3350 6.543831 AGACAAGCCATGATCCAAACTAATAC 59.456 38.462 0.00 0.00 0.00 1.89
3780 3825 3.825014 AGACTGACTTACGCTTCAGGTTA 59.175 43.478 3.79 0.00 43.12 2.85
3869 3914 1.994074 TGCAATGAAATGATGCGCAAC 59.006 42.857 17.11 13.83 42.91 4.17
4119 4531 3.885901 TGGACGATCAATTGTTTCACCAA 59.114 39.130 5.13 0.00 0.00 3.67
4136 4548 3.775202 CAAGTAACTCCAGAGATGGACG 58.225 50.000 0.70 0.00 33.77 4.79
4145 4557 0.608640 ACGAGGGCAAGTAACTCCAG 59.391 55.000 0.00 0.00 0.00 3.86
4159 4571 5.676532 ATTCGAGTAAGTGATAGACGAGG 57.323 43.478 0.00 0.00 0.00 4.63
4233 4645 3.864789 TCTGGGATTTCTTGATAGGCC 57.135 47.619 0.00 0.00 0.00 5.19
4337 4749 1.382522 AATGCATGCTTACCTCCACG 58.617 50.000 20.33 0.00 0.00 4.94
4624 5036 0.595095 GCTGCTTGAACTTCACCAGG 59.405 55.000 15.43 0.00 30.84 4.45
4717 5129 1.120437 CAGCGTCCGCAAACTTTTTC 58.880 50.000 14.70 0.00 44.88 2.29
4774 5186 6.596497 GGTTCGTCTGGTTTATCAGGAAATTA 59.404 38.462 0.00 0.00 35.58 1.40
4846 5258 0.605589 AGAACTCGTTCCTCAGCAGG 59.394 55.000 6.20 0.00 40.33 4.85
4873 5285 1.467734 TCTGAGAAGAAGTCGTACGGC 59.532 52.381 12.98 12.98 0.00 5.68
4912 5324 3.536164 CCTTTGTGCACAAGGGCA 58.464 55.556 38.06 21.61 44.36 5.36
5036 5448 1.398041 CAGCATGTACCATGGTGAACG 59.602 52.381 28.17 13.98 46.89 3.95
5047 5459 3.319137 TCACTTCACTCCAGCATGTAC 57.681 47.619 0.00 0.00 0.00 2.90
5048 5460 4.558226 ATTCACTTCACTCCAGCATGTA 57.442 40.909 0.00 0.00 0.00 2.29
5049 5461 2.936919 TTCACTTCACTCCAGCATGT 57.063 45.000 0.00 0.00 0.00 3.21
5050 5462 4.008330 AGAATTCACTTCACTCCAGCATG 58.992 43.478 8.44 0.00 36.24 4.06
5052 5464 3.777106 AGAATTCACTTCACTCCAGCA 57.223 42.857 8.44 0.00 36.24 4.41
5268 5705 4.785453 GTGGGAAGGCGCTGGAGG 62.785 72.222 7.64 0.00 0.00 4.30
5293 5730 0.236187 GATCGAGACGGAGACATCGG 59.764 60.000 0.00 0.00 35.91 4.18
5324 5761 1.227380 GCATAGCACTAGCACCGCT 60.227 57.895 0.00 0.00 45.49 5.52
5390 5829 4.514066 TCGCTCGCTACATAGAATAGAACA 59.486 41.667 0.00 0.00 0.00 3.18
5471 5913 3.227614 CATCCAGGCATGAATCATCCAA 58.772 45.455 0.00 1.55 0.00 3.53
5472 5914 2.176148 ACATCCAGGCATGAATCATCCA 59.824 45.455 0.00 0.00 0.00 3.41
5473 5915 2.557056 CACATCCAGGCATGAATCATCC 59.443 50.000 0.00 0.00 0.00 3.51
5474 5916 3.483421 TCACATCCAGGCATGAATCATC 58.517 45.455 0.00 0.00 0.00 2.92
5553 5995 1.594833 CCGGATCGTGAGGGTCAAA 59.405 57.895 0.00 0.00 0.00 2.69
5612 6054 2.034066 CCCCTTCTTCTTGCGCCA 59.966 61.111 4.18 0.00 0.00 5.69
5613 6055 3.443925 GCCCCTTCTTCTTGCGCC 61.444 66.667 4.18 0.00 0.00 6.53
5615 6057 2.047274 TCGCCCCTTCTTCTTGCG 60.047 61.111 0.00 0.00 46.09 4.85
5616 6058 2.041115 GGTCGCCCCTTCTTCTTGC 61.041 63.158 0.00 0.00 0.00 4.01
5617 6059 4.303257 GGTCGCCCCTTCTTCTTG 57.697 61.111 0.00 0.00 0.00 3.02
5627 6069 1.347707 TCAAGATGATATGGGTCGCCC 59.652 52.381 7.87 7.87 45.71 6.13
5628 6070 2.037772 AGTCAAGATGATATGGGTCGCC 59.962 50.000 0.00 0.00 0.00 5.54
5629 6071 3.393089 AGTCAAGATGATATGGGTCGC 57.607 47.619 0.00 0.00 0.00 5.19
5630 6072 4.060900 CCAAGTCAAGATGATATGGGTCG 58.939 47.826 6.52 0.00 33.78 4.79
5631 6073 5.041191 ACCAAGTCAAGATGATATGGGTC 57.959 43.478 14.76 0.00 38.50 4.46
5632 6074 5.456921 AACCAAGTCAAGATGATATGGGT 57.543 39.130 14.76 8.46 38.50 4.51
5633 6075 6.567050 CAAAACCAAGTCAAGATGATATGGG 58.433 40.000 14.76 4.27 38.50 4.00
5634 6076 6.038356 GCAAAACCAAGTCAAGATGATATGG 58.962 40.000 10.86 10.86 39.43 2.74
5635 6077 6.860080 AGCAAAACCAAGTCAAGATGATATG 58.140 36.000 0.00 0.00 0.00 1.78
5636 6078 7.363268 GGAAGCAAAACCAAGTCAAGATGATAT 60.363 37.037 0.00 0.00 0.00 1.63
5637 6079 6.071952 GGAAGCAAAACCAAGTCAAGATGATA 60.072 38.462 0.00 0.00 0.00 2.15
5638 6080 5.279156 GGAAGCAAAACCAAGTCAAGATGAT 60.279 40.000 0.00 0.00 0.00 2.45
5639 6081 4.037923 GGAAGCAAAACCAAGTCAAGATGA 59.962 41.667 0.00 0.00 0.00 2.92
5640 6082 4.301628 GGAAGCAAAACCAAGTCAAGATG 58.698 43.478 0.00 0.00 0.00 2.90
5641 6083 3.321968 GGGAAGCAAAACCAAGTCAAGAT 59.678 43.478 0.00 0.00 0.00 2.40
5642 6084 2.693074 GGGAAGCAAAACCAAGTCAAGA 59.307 45.455 0.00 0.00 0.00 3.02
5643 6085 2.224042 GGGGAAGCAAAACCAAGTCAAG 60.224 50.000 0.00 0.00 0.00 3.02
5644 6086 1.760029 GGGGAAGCAAAACCAAGTCAA 59.240 47.619 0.00 0.00 0.00 3.18
5645 6087 1.063266 AGGGGAAGCAAAACCAAGTCA 60.063 47.619 0.00 0.00 0.00 3.41
5646 6088 1.613925 GAGGGGAAGCAAAACCAAGTC 59.386 52.381 0.00 0.00 0.00 3.01
5647 6089 1.217942 AGAGGGGAAGCAAAACCAAGT 59.782 47.619 0.00 0.00 0.00 3.16
5648 6090 2.001076 AGAGGGGAAGCAAAACCAAG 57.999 50.000 0.00 0.00 0.00 3.61
5649 6091 2.470057 AAGAGGGGAAGCAAAACCAA 57.530 45.000 0.00 0.00 0.00 3.67
5650 6092 2.470057 AAAGAGGGGAAGCAAAACCA 57.530 45.000 0.00 0.00 0.00 3.67
5651 6093 3.838244 AAAAAGAGGGGAAGCAAAACC 57.162 42.857 0.00 0.00 0.00 3.27
5669 6111 5.151297 ACCCGACTCGGTATTCTTAAAAA 57.849 39.130 16.35 0.00 46.80 1.94
5670 6112 4.806640 ACCCGACTCGGTATTCTTAAAA 57.193 40.909 16.35 0.00 46.80 1.52
5671 6113 4.463891 AGAACCCGACTCGGTATTCTTAAA 59.536 41.667 20.83 0.00 46.80 1.52
5672 6114 4.019174 AGAACCCGACTCGGTATTCTTAA 58.981 43.478 20.83 0.00 46.80 1.85
5673 6115 3.624777 AGAACCCGACTCGGTATTCTTA 58.375 45.455 20.83 0.00 46.80 2.10
5674 6116 2.454538 AGAACCCGACTCGGTATTCTT 58.545 47.619 20.83 10.72 46.80 2.52
5675 6117 2.140839 AGAACCCGACTCGGTATTCT 57.859 50.000 20.83 20.83 46.80 2.40
5676 6118 2.426381 AGAAGAACCCGACTCGGTATTC 59.574 50.000 16.35 17.32 46.80 1.75
5677 6119 2.426381 GAGAAGAACCCGACTCGGTATT 59.574 50.000 16.35 9.98 46.80 1.89
5678 6120 2.022934 GAGAAGAACCCGACTCGGTAT 58.977 52.381 16.35 4.40 46.80 2.73
5679 6121 1.457346 GAGAAGAACCCGACTCGGTA 58.543 55.000 16.35 0.00 46.80 4.02
5680 6122 1.249469 GGAGAAGAACCCGACTCGGT 61.249 60.000 16.35 0.00 46.80 4.69
5682 6124 1.401199 GTAGGAGAAGAACCCGACTCG 59.599 57.143 0.00 0.00 0.00 4.18
5683 6125 1.750206 GGTAGGAGAAGAACCCGACTC 59.250 57.143 0.00 0.00 0.00 3.36
5684 6126 1.076677 TGGTAGGAGAAGAACCCGACT 59.923 52.381 0.00 0.00 31.97 4.18
5685 6127 1.477295 CTGGTAGGAGAAGAACCCGAC 59.523 57.143 0.00 0.00 31.97 4.79
5686 6128 1.076677 ACTGGTAGGAGAAGAACCCGA 59.923 52.381 0.00 0.00 31.97 5.14
5687 6129 1.558233 ACTGGTAGGAGAAGAACCCG 58.442 55.000 0.00 0.00 31.97 5.28
5688 6130 3.642377 GGATACTGGTAGGAGAAGAACCC 59.358 52.174 0.00 0.00 31.97 4.11
5689 6131 3.318557 CGGATACTGGTAGGAGAAGAACC 59.681 52.174 0.00 0.00 0.00 3.62
5690 6132 4.205587 TCGGATACTGGTAGGAGAAGAAC 58.794 47.826 0.00 0.00 0.00 3.01
5691 6133 4.515028 TCGGATACTGGTAGGAGAAGAA 57.485 45.455 0.00 0.00 0.00 2.52
5692 6134 4.205587 GTTCGGATACTGGTAGGAGAAGA 58.794 47.826 0.00 0.00 0.00 2.87
5693 6135 3.318557 GGTTCGGATACTGGTAGGAGAAG 59.681 52.174 0.00 0.00 0.00 2.85
5694 6136 3.294214 GGTTCGGATACTGGTAGGAGAA 58.706 50.000 0.00 0.00 0.00 2.87
5695 6137 2.242965 TGGTTCGGATACTGGTAGGAGA 59.757 50.000 0.00 0.00 0.00 3.71
5696 6138 2.662866 TGGTTCGGATACTGGTAGGAG 58.337 52.381 0.00 0.00 0.00 3.69
5697 6139 2.762327 GTTGGTTCGGATACTGGTAGGA 59.238 50.000 0.00 0.00 0.00 2.94
5698 6140 2.764572 AGTTGGTTCGGATACTGGTAGG 59.235 50.000 0.00 0.00 0.00 3.18
5699 6141 3.181478 GGAGTTGGTTCGGATACTGGTAG 60.181 52.174 0.00 0.00 0.00 3.18
5700 6142 2.762327 GGAGTTGGTTCGGATACTGGTA 59.238 50.000 0.00 0.00 0.00 3.25
5701 6143 1.553704 GGAGTTGGTTCGGATACTGGT 59.446 52.381 0.00 0.00 0.00 4.00
5702 6144 1.553248 TGGAGTTGGTTCGGATACTGG 59.447 52.381 0.00 0.00 0.00 4.00
5703 6145 2.618053 GTGGAGTTGGTTCGGATACTG 58.382 52.381 0.00 0.00 0.00 2.74
5704 6146 1.203994 CGTGGAGTTGGTTCGGATACT 59.796 52.381 0.00 0.00 0.00 2.12
5705 6147 1.636988 CGTGGAGTTGGTTCGGATAC 58.363 55.000 0.00 0.00 0.00 2.24
5706 6148 0.533491 CCGTGGAGTTGGTTCGGATA 59.467 55.000 0.00 0.00 43.22 2.59
5707 6149 1.295423 CCGTGGAGTTGGTTCGGAT 59.705 57.895 0.00 0.00 43.22 4.18
5708 6150 2.738480 CCGTGGAGTTGGTTCGGA 59.262 61.111 0.00 0.00 43.22 4.55
5709 6151 3.047877 GCCGTGGAGTTGGTTCGG 61.048 66.667 0.00 0.00 43.37 4.30
5710 6152 3.411351 CGCCGTGGAGTTGGTTCG 61.411 66.667 0.00 0.00 0.00 3.95
5761 10630 2.857483 TGCAGGAAAAATCCTTCGTGA 58.143 42.857 9.52 0.00 41.54 4.35
5872 15122 4.735578 GCGACCGTTAAGACATCCTATTGA 60.736 45.833 0.00 0.00 0.00 2.57
6076 15326 4.143333 CCTCTACACGTGGGCCCG 62.143 72.222 21.57 8.84 0.00 6.13
6112 15362 2.088423 GATCGTGGACTCTCAGTCTGT 58.912 52.381 0.00 0.00 44.46 3.41
6162 15412 0.111061 TGCACAAAGACAGAGGGCAT 59.889 50.000 0.00 0.00 0.00 4.40
6174 15424 5.175090 TCATTTGATGTTACGTGCACAAA 57.825 34.783 18.64 7.62 0.00 2.83
6257 15576 3.789791 GCAGTTCATATGCATGGAACACG 60.790 47.826 30.89 25.08 43.31 4.49
6339 23583 5.069501 ACTCGGAGTAGAAATACAACACC 57.930 43.478 9.33 0.00 0.00 4.16
6363 23607 3.505680 GCTATGTCCACATCAACACCAAA 59.494 43.478 0.00 0.00 37.76 3.28
6364 23608 3.081061 GCTATGTCCACATCAACACCAA 58.919 45.455 0.00 0.00 37.76 3.67
6365 23609 2.617788 GGCTATGTCCACATCAACACCA 60.618 50.000 0.00 0.00 37.76 4.17
6366 23610 2.017049 GGCTATGTCCACATCAACACC 58.983 52.381 0.00 0.00 37.76 4.16
6367 23611 2.939103 GAGGCTATGTCCACATCAACAC 59.061 50.000 0.00 0.00 37.76 3.32
6368 23612 2.092968 GGAGGCTATGTCCACATCAACA 60.093 50.000 0.00 0.00 37.76 3.33
6369 23613 2.092968 TGGAGGCTATGTCCACATCAAC 60.093 50.000 0.00 0.00 39.28 3.18
6370 23614 2.195727 TGGAGGCTATGTCCACATCAA 58.804 47.619 0.00 0.00 39.28 2.57
6371 23615 1.878211 TGGAGGCTATGTCCACATCA 58.122 50.000 0.00 0.00 39.28 3.07
6377 23621 1.895798 TCATCGATGGAGGCTATGTCC 59.104 52.381 24.61 0.00 34.31 4.02
6378 23622 2.822561 TCTCATCGATGGAGGCTATGTC 59.177 50.000 24.61 0.00 33.18 3.06
6379 23623 2.560542 GTCTCATCGATGGAGGCTATGT 59.439 50.000 24.61 0.00 34.23 2.29
6380 23624 2.094286 GGTCTCATCGATGGAGGCTATG 60.094 54.545 24.61 0.00 37.18 2.23
6381 23625 2.175202 GGTCTCATCGATGGAGGCTAT 58.825 52.381 24.61 0.00 37.18 2.97
6382 23626 1.133482 TGGTCTCATCGATGGAGGCTA 60.133 52.381 24.61 16.29 37.18 3.93
6383 23627 0.397675 TGGTCTCATCGATGGAGGCT 60.398 55.000 24.61 0.00 37.18 4.58
6384 23628 0.465705 TTGGTCTCATCGATGGAGGC 59.534 55.000 24.61 19.81 36.28 4.70
6385 23629 2.988010 TTTGGTCTCATCGATGGAGG 57.012 50.000 24.61 14.84 33.18 4.30
6386 23630 7.502120 AATATTTTTGGTCTCATCGATGGAG 57.498 36.000 24.61 18.97 0.00 3.86
6387 23631 9.219603 GATAATATTTTTGGTCTCATCGATGGA 57.780 33.333 24.61 17.23 0.00 3.41
6388 23632 8.454106 GGATAATATTTTTGGTCTCATCGATGG 58.546 37.037 24.61 15.28 0.00 3.51
6389 23633 9.224267 AGGATAATATTTTTGGTCTCATCGATG 57.776 33.333 19.61 19.61 0.00 3.84
6390 23634 9.442047 GAGGATAATATTTTTGGTCTCATCGAT 57.558 33.333 0.00 0.00 0.00 3.59
6391 23635 8.428852 TGAGGATAATATTTTTGGTCTCATCGA 58.571 33.333 0.00 0.00 0.00 3.59
6392 23636 8.607441 TGAGGATAATATTTTTGGTCTCATCG 57.393 34.615 0.00 0.00 0.00 3.84
6413 23657 9.388506 GGAATCACCTGATTATTGTATATGAGG 57.611 37.037 0.38 0.00 44.14 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.