Multiple sequence alignment - TraesCS6B01G226600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G226600 chr6B 100.000 2863 0 0 1 2863 348697543 348694681 0.000000e+00 5288.0
1 TraesCS6B01G226600 chr6A 91.705 1941 75 36 786 2692 322997145 322995257 0.000000e+00 2614.0
2 TraesCS6B01G226600 chr6A 87.069 116 6 2 2703 2809 322995219 322995104 3.870000e-24 122.0
3 TraesCS6B01G226600 chr6D 91.583 1497 59 25 787 2253 262271885 262273344 0.000000e+00 2004.0
4 TraesCS6B01G226600 chr6D 95.196 791 31 1 1 784 450090495 450091285 0.000000e+00 1243.0
5 TraesCS6B01G226600 chr6D 91.387 476 23 7 2238 2703 262273412 262273879 1.120000e-178 636.0
6 TraesCS6B01G226600 chr6D 88.793 116 3 5 2703 2809 262273910 262274024 1.790000e-27 134.0
7 TraesCS6B01G226600 chr1A 94.311 791 38 2 1 784 334159304 334160094 0.000000e+00 1205.0
8 TraesCS6B01G226600 chr7B 94.192 792 38 2 1 784 99627927 99627136 0.000000e+00 1201.0
9 TraesCS6B01G226600 chr7B 90.323 62 2 2 2806 2863 255035187 255035248 8.500000e-11 78.7
10 TraesCS6B01G226600 chr4A 95.510 735 32 1 1 734 58351583 58350849 0.000000e+00 1173.0
11 TraesCS6B01G226600 chr4A 95.161 372 18 0 1 372 683497187 683496816 3.180000e-164 588.0
12 TraesCS6B01G226600 chr4A 93.103 58 1 3 2806 2863 90090621 90090675 6.570000e-12 82.4
13 TraesCS6B01G226600 chr7A 96.610 59 2 0 2805 2863 32013140 32013198 6.530000e-17 99.0
14 TraesCS6B01G226600 chr5D 94.828 58 3 0 2806 2863 546839006 546838949 1.090000e-14 91.6
15 TraesCS6B01G226600 chr3A 94.828 58 1 1 2806 2863 729183862 729183917 3.930000e-14 89.8
16 TraesCS6B01G226600 chr3A 94.828 58 1 1 2806 2863 729577471 729577416 3.930000e-14 89.8
17 TraesCS6B01G226600 chr2B 91.379 58 5 0 2806 2863 489420939 489420882 2.360000e-11 80.5
18 TraesCS6B01G226600 chr7D 91.379 58 4 1 2806 2863 568622345 568622289 8.500000e-11 78.7
19 TraesCS6B01G226600 chr3B 91.379 58 3 2 2806 2863 412574744 412574799 8.500000e-11 78.7
20 TraesCS6B01G226600 chr1B 100.000 28 0 0 2581 2608 652580087 652580114 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G226600 chr6B 348694681 348697543 2862 True 5288.000000 5288 100.000000 1 2863 1 chr6B.!!$R1 2862
1 TraesCS6B01G226600 chr6A 322995104 322997145 2041 True 1368.000000 2614 89.387000 786 2809 2 chr6A.!!$R1 2023
2 TraesCS6B01G226600 chr6D 450090495 450091285 790 False 1243.000000 1243 95.196000 1 784 1 chr6D.!!$F1 783
3 TraesCS6B01G226600 chr6D 262271885 262274024 2139 False 924.666667 2004 90.587667 787 2809 3 chr6D.!!$F2 2022
4 TraesCS6B01G226600 chr1A 334159304 334160094 790 False 1205.000000 1205 94.311000 1 784 1 chr1A.!!$F1 783
5 TraesCS6B01G226600 chr7B 99627136 99627927 791 True 1201.000000 1201 94.192000 1 784 1 chr7B.!!$R1 783
6 TraesCS6B01G226600 chr4A 58350849 58351583 734 True 1173.000000 1173 95.510000 1 734 1 chr4A.!!$R1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.182775 AGGCTTTGACGAACACCCTT 59.817 50.000 0.00 0.0 0.0 3.95 F
1221 1241 1.077930 CCAGGTGATGTGAGGCCAG 60.078 63.158 5.01 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1253 0.108756 GTCGAAAAGGGAGAGGACGG 60.109 60.000 0.0 0.0 0.0 4.79 R
2039 2091 1.734465 GAAGAGTGAATCAACCTGGCG 59.266 52.381 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.182775 AGGCTTTGACGAACACCCTT 59.817 50.000 0.00 0.00 0.00 3.95
57 58 5.635120 AGCTCTCCACATTTTCTTTACCTT 58.365 37.500 0.00 0.00 0.00 3.50
175 176 3.411446 CAGCAAAGGGTGACTATTGTGA 58.589 45.455 0.00 0.00 45.29 3.58
208 209 3.523157 ACATGAAGTGATGTACCATCCCA 59.477 43.478 0.00 0.00 34.69 4.37
247 248 4.937620 CAGAGGTGCAGCTACATTTTCTTA 59.062 41.667 20.22 0.00 0.00 2.10
313 314 2.874780 CGCCGAAGAAGGTCGACG 60.875 66.667 9.92 0.00 43.86 5.12
315 316 1.503542 GCCGAAGAAGGTCGACGTA 59.496 57.895 11.72 0.00 43.86 3.57
325 326 6.311055 AGAAGGTCGACGTAAATCCTATAC 57.689 41.667 11.72 0.00 0.00 1.47
379 380 2.741985 TGCCATGCCACGAAGTCG 60.742 61.111 0.00 0.00 41.61 4.18
397 398 6.414408 AAGTCGTCATGATGTTCAAAGATC 57.586 37.500 14.52 0.00 0.00 2.75
490 491 7.851228 AGTTAGTGTATGGATCAATCAACTCA 58.149 34.615 1.70 0.00 0.00 3.41
504 505 2.703536 TCAACTCAGCAACCCTAGTCAA 59.296 45.455 0.00 0.00 0.00 3.18
646 648 3.037549 CTCTACTCCCTGAAGGATGCTT 58.962 50.000 0.00 0.00 46.33 3.91
648 650 1.661463 ACTCCCTGAAGGATGCTTCA 58.339 50.000 25.73 25.73 46.33 3.02
693 695 3.797865 GCAGTTGCAGCAGAAAGAATGTT 60.798 43.478 2.55 0.00 41.59 2.71
694 696 3.979495 CAGTTGCAGCAGAAAGAATGTTC 59.021 43.478 2.55 0.00 0.00 3.18
697 699 1.888512 GCAGCAGAAAGAATGTTCCCA 59.111 47.619 0.00 0.00 0.00 4.37
735 737 2.605837 TGTAGGACACGAGCACAAAA 57.394 45.000 0.00 0.00 0.00 2.44
764 773 4.624364 CTGACGCCACACCTGCCA 62.624 66.667 0.00 0.00 0.00 4.92
982 991 4.473520 CCACGGCCACAGCTAGGG 62.474 72.222 2.24 2.67 39.73 3.53
1211 1231 2.610859 AACCCGAGCCCAGGTGAT 60.611 61.111 0.00 0.00 36.19 3.06
1212 1232 2.971598 AACCCGAGCCCAGGTGATG 61.972 63.158 0.00 0.00 36.19 3.07
1213 1233 3.402681 CCCGAGCCCAGGTGATGT 61.403 66.667 0.00 0.00 0.00 3.06
1214 1234 2.124983 CCGAGCCCAGGTGATGTG 60.125 66.667 0.00 0.00 0.00 3.21
1215 1235 2.659063 CCGAGCCCAGGTGATGTGA 61.659 63.158 0.00 0.00 0.00 3.58
1216 1236 1.153489 CGAGCCCAGGTGATGTGAG 60.153 63.158 0.00 0.00 0.00 3.51
1217 1237 1.222936 GAGCCCAGGTGATGTGAGG 59.777 63.158 0.00 0.00 0.00 3.86
1218 1238 2.439156 GCCCAGGTGATGTGAGGC 60.439 66.667 0.00 0.00 0.00 4.70
1219 1239 2.273449 CCCAGGTGATGTGAGGCC 59.727 66.667 0.00 0.00 0.00 5.19
1220 1240 2.605607 CCCAGGTGATGTGAGGCCA 61.606 63.158 5.01 0.00 0.00 5.36
1221 1241 1.077930 CCAGGTGATGTGAGGCCAG 60.078 63.158 5.01 0.00 0.00 4.85
1222 1242 1.748122 CAGGTGATGTGAGGCCAGC 60.748 63.158 5.01 0.00 0.00 4.85
1223 1243 2.439156 GGTGATGTGAGGCCAGCC 60.439 66.667 5.01 0.00 0.00 4.85
1253 1273 0.108756 CGTCCTCTCCCTTTTCGACC 60.109 60.000 0.00 0.00 0.00 4.79
1264 1284 1.582610 TTTTCGACCCCGCAAGATGC 61.583 55.000 0.00 0.00 40.69 3.91
1439 1459 2.974489 CTCTGCGTGCTTGCTTGGG 61.974 63.158 2.56 0.00 35.36 4.12
1459 1479 7.065683 GCTTGGGATTTTCTTTTTCTTTGTCAA 59.934 33.333 0.00 0.00 0.00 3.18
1575 1600 2.678934 AGCTGGTTCGTCGGCCTA 60.679 61.111 0.00 0.00 39.73 3.93
1626 1651 2.883253 GAGAGGTTCAGCGAGCGC 60.883 66.667 6.78 6.78 42.33 5.92
1707 1736 1.720852 GCACAATTGCCGCTTTACTTG 59.279 47.619 5.05 0.00 43.66 3.16
1712 1741 0.958091 TTGCCGCTTTACTTGCACAT 59.042 45.000 0.00 0.00 32.63 3.21
1713 1742 0.958091 TGCCGCTTTACTTGCACATT 59.042 45.000 0.00 0.00 0.00 2.71
1714 1743 1.335780 TGCCGCTTTACTTGCACATTG 60.336 47.619 0.00 0.00 0.00 2.82
1759 1791 8.859236 TCATCATCTCAATCTTTTGTTTCTCT 57.141 30.769 0.00 0.00 34.32 3.10
1760 1792 8.727910 TCATCATCTCAATCTTTTGTTTCTCTG 58.272 33.333 0.00 0.00 34.32 3.35
1761 1793 8.512956 CATCATCTCAATCTTTTGTTTCTCTGT 58.487 33.333 0.00 0.00 34.32 3.41
1762 1794 7.868775 TCATCTCAATCTTTTGTTTCTCTGTG 58.131 34.615 0.00 0.00 34.32 3.66
1786 1820 3.256833 TGTGCGCGCATGATCTCG 61.257 61.111 38.62 0.00 0.00 4.04
1902 1936 0.606673 GGCCGGACTGCTTTCTTCTT 60.607 55.000 5.05 0.00 0.00 2.52
1920 1954 5.998363 TCTTCTTACCTTTCCTTCTTTCTGC 59.002 40.000 0.00 0.00 0.00 4.26
1966 2000 1.067565 TGCTCCAGACATCGTCTCAAC 60.068 52.381 0.00 0.00 41.37 3.18
1978 2012 6.735130 ACATCGTCTCAACATATTCGTGATA 58.265 36.000 0.00 0.00 0.00 2.15
2039 2091 4.414337 AGAGACAGGCTTGGATGATTAC 57.586 45.455 0.00 0.00 0.00 1.89
2041 2093 1.599542 GACAGGCTTGGATGATTACGC 59.400 52.381 0.00 0.00 0.00 4.42
2042 2094 0.947244 CAGGCTTGGATGATTACGCC 59.053 55.000 0.00 0.00 37.80 5.68
2126 2178 7.370383 TGTTTTCCAGAGATAAGTTGCAATTC 58.630 34.615 0.59 0.00 0.00 2.17
2128 2180 5.441718 TCCAGAGATAAGTTGCAATTCCT 57.558 39.130 0.59 0.00 0.00 3.36
2241 2376 6.681729 TCCTAGACCAAGAAAACATACTGT 57.318 37.500 0.00 0.00 0.00 3.55
2309 2444 7.009540 GTGTGGCATAAATAAGAAATGCACTTC 59.990 37.037 0.00 0.00 46.18 3.01
2346 2481 3.149196 TGGAGCTTGAAGCAAAAGTAGG 58.851 45.455 20.45 0.00 45.56 3.18
2353 2488 5.234329 GCTTGAAGCAAAAGTAGGAAAAACC 59.766 40.000 13.09 0.00 41.89 3.27
2384 2519 1.228063 CAGGTGCTGGTTGCTGAGT 60.228 57.895 0.00 0.00 43.37 3.41
2385 2520 1.228063 AGGTGCTGGTTGCTGAGTG 60.228 57.895 0.00 0.00 43.37 3.51
2386 2521 1.227943 GGTGCTGGTTGCTGAGTGA 60.228 57.895 0.00 0.00 43.37 3.41
2387 2522 1.233285 GGTGCTGGTTGCTGAGTGAG 61.233 60.000 0.00 0.00 43.37 3.51
2508 2643 9.372369 GAATATCCAGTAGCACTTGGATTATAC 57.628 37.037 17.49 7.19 37.35 1.47
2509 2644 8.671987 ATATCCAGTAGCACTTGGATTATACT 57.328 34.615 17.49 0.00 37.35 2.12
2510 2645 9.769677 ATATCCAGTAGCACTTGGATTATACTA 57.230 33.333 17.49 3.48 37.35 1.82
2511 2646 7.526142 TCCAGTAGCACTTGGATTATACTAG 57.474 40.000 0.00 0.00 0.00 2.57
2538 2673 2.604462 GGCTTCAGCAAACAAACACAAG 59.396 45.455 0.30 0.00 44.36 3.16
2583 2728 7.331026 TCGAAATGTGTTCCTAAATGAGAGAT 58.669 34.615 0.00 0.00 0.00 2.75
2591 2736 8.352942 GTGTTCCTAAATGAGAGATGTTTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2764 2948 3.609853 TGGCAAGTTAGGACATGATGAC 58.390 45.455 0.00 0.00 0.00 3.06
2803 2987 3.655211 CACCCTTGGGCTCTGGCT 61.655 66.667 5.46 0.00 38.73 4.75
2806 2990 4.120755 CCTTGGGCTCTGGCTCCC 62.121 72.222 0.00 0.00 42.93 4.30
2808 2992 4.682714 TTGGGCTCTGGCTCCCCT 62.683 66.667 0.00 0.00 41.92 4.79
2813 2997 3.151022 CTCTGGCTCCCCTCCGTC 61.151 72.222 0.00 0.00 0.00 4.79
2814 2998 3.670629 CTCTGGCTCCCCTCCGTCT 62.671 68.421 0.00 0.00 0.00 4.18
2815 2999 3.151022 CTGGCTCCCCTCCGTCTC 61.151 72.222 0.00 0.00 0.00 3.36
2816 3000 3.965026 CTGGCTCCCCTCCGTCTCA 62.965 68.421 0.00 0.00 0.00 3.27
2817 3001 2.444895 GGCTCCCCTCCGTCTCAT 60.445 66.667 0.00 0.00 0.00 2.90
2818 3002 1.152525 GGCTCCCCTCCGTCTCATA 60.153 63.158 0.00 0.00 0.00 2.15
2819 3003 0.759436 GGCTCCCCTCCGTCTCATAA 60.759 60.000 0.00 0.00 0.00 1.90
2820 3004 1.343069 GCTCCCCTCCGTCTCATAAT 58.657 55.000 0.00 0.00 0.00 1.28
2821 3005 1.001406 GCTCCCCTCCGTCTCATAATG 59.999 57.143 0.00 0.00 0.00 1.90
2822 3006 2.320781 CTCCCCTCCGTCTCATAATGT 58.679 52.381 0.00 0.00 0.00 2.71
2823 3007 3.497332 CTCCCCTCCGTCTCATAATGTA 58.503 50.000 0.00 0.00 0.00 2.29
2824 3008 3.895656 CTCCCCTCCGTCTCATAATGTAA 59.104 47.826 0.00 0.00 0.00 2.41
2825 3009 3.895656 TCCCCTCCGTCTCATAATGTAAG 59.104 47.826 0.00 0.00 0.00 2.34
2826 3010 3.895656 CCCCTCCGTCTCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
2827 3011 4.262079 CCCCTCCGTCTCATAATGTAAGAC 60.262 50.000 0.00 0.00 36.82 3.01
2853 3037 5.866335 TTTTGACACTACACAAAACGTCT 57.134 34.783 0.00 0.00 39.81 4.18
2854 3038 5.866335 TTTGACACTACACAAAACGTCTT 57.134 34.783 0.00 0.00 33.90 3.01
2855 3039 6.964741 TTTGACACTACACAAAACGTCTTA 57.035 33.333 0.00 0.00 33.90 2.10
2856 3040 5.954434 TGACACTACACAAAACGTCTTAC 57.046 39.130 0.00 0.00 0.00 2.34
2857 3041 5.409211 TGACACTACACAAAACGTCTTACA 58.591 37.500 0.00 0.00 0.00 2.41
2858 3042 6.044046 TGACACTACACAAAACGTCTTACAT 58.956 36.000 0.00 0.00 0.00 2.29
2859 3043 6.535865 TGACACTACACAAAACGTCTTACATT 59.464 34.615 0.00 0.00 0.00 2.71
2860 3044 7.705752 TGACACTACACAAAACGTCTTACATTA 59.294 33.333 0.00 0.00 0.00 1.90
2861 3045 8.597662 ACACTACACAAAACGTCTTACATTAT 57.402 30.769 0.00 0.00 0.00 1.28
2862 3046 8.492748 ACACTACACAAAACGTCTTACATTATG 58.507 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.135141 ACTTGTTTCTGCGCTGCAAAA 60.135 42.857 9.73 2.79 38.41 2.44
175 176 2.306805 TCACTTCATGTGGAGATTGGCT 59.693 45.455 0.00 0.00 46.20 4.75
203 204 0.032813 CAGGTGAATTGCCCTGGGAT 60.033 55.000 19.27 0.00 43.74 3.85
236 237 4.202326 GCGGGAGGAGGATAAGAAAATGTA 60.202 45.833 0.00 0.00 0.00 2.29
247 248 3.767268 TCAGGGCGGGAGGAGGAT 61.767 66.667 0.00 0.00 0.00 3.24
379 380 5.801350 TTCCGATCTTTGAACATCATGAC 57.199 39.130 0.00 0.00 0.00 3.06
397 398 4.581493 CAAATGTGATCTTGTCGATTCCG 58.419 43.478 0.00 0.00 30.84 4.30
646 648 3.947196 CTGGCATAAGCTATGTTTGGTGA 59.053 43.478 0.00 0.00 41.70 4.02
648 650 3.053693 TCCTGGCATAAGCTATGTTTGGT 60.054 43.478 0.00 0.00 41.70 3.67
694 696 2.305927 AGCCAAGTATTATCCGGATGGG 59.694 50.000 27.55 15.86 35.24 4.00
697 699 4.706842 ACAAGCCAAGTATTATCCGGAT 57.293 40.909 22.95 22.95 0.00 4.18
825 834 1.134965 CGCAACTCTAGACTCTTGGGG 60.135 57.143 0.00 0.00 0.00 4.96
978 987 2.972021 TCGAGATTGGATCATTGCCCTA 59.028 45.455 0.00 0.00 0.00 3.53
979 988 1.770658 TCGAGATTGGATCATTGCCCT 59.229 47.619 0.00 0.00 0.00 5.19
981 990 3.567164 ACATTCGAGATTGGATCATTGCC 59.433 43.478 0.00 0.00 0.00 4.52
982 991 4.610007 CGACATTCGAGATTGGATCATTGC 60.610 45.833 0.00 0.00 43.74 3.56
1211 1231 4.020617 CTTCCGGCTGGCCTCACA 62.021 66.667 6.73 0.00 34.14 3.58
1212 1232 4.785453 CCTTCCGGCTGGCCTCAC 62.785 72.222 6.73 0.00 34.14 3.51
1214 1234 2.949705 GATTCCTTCCGGCTGGCCTC 62.950 65.000 6.73 0.00 34.14 4.70
1215 1235 3.017581 ATTCCTTCCGGCTGGCCT 61.018 61.111 6.73 0.00 34.14 5.19
1216 1236 2.517166 GATTCCTTCCGGCTGGCC 60.517 66.667 6.73 0.00 34.14 5.36
1217 1237 2.517166 GGATTCCTTCCGGCTGGC 60.517 66.667 6.73 0.00 33.93 4.85
1232 1252 0.251474 TCGAAAAGGGAGAGGACGGA 60.251 55.000 0.00 0.00 0.00 4.69
1233 1253 0.108756 GTCGAAAAGGGAGAGGACGG 60.109 60.000 0.00 0.00 0.00 4.79
1235 1255 0.249676 GGGTCGAAAAGGGAGAGGAC 59.750 60.000 0.00 0.00 0.00 3.85
1237 1257 1.602771 GGGGTCGAAAAGGGAGAGG 59.397 63.158 0.00 0.00 0.00 3.69
1239 1259 2.951101 GCGGGGTCGAAAAGGGAGA 61.951 63.158 0.00 0.00 39.00 3.71
1240 1260 2.436115 GCGGGGTCGAAAAGGGAG 60.436 66.667 0.00 0.00 39.00 4.30
1242 1262 2.281900 TTGCGGGGTCGAAAAGGG 60.282 61.111 0.00 0.00 39.00 3.95
1264 1284 1.302832 AAGCCAAACGCCCTCTGAG 60.303 57.895 0.00 0.00 38.78 3.35
1306 1326 2.710724 GAACACCAACGACGGCTCCT 62.711 60.000 0.00 0.00 0.00 3.69
1427 1447 3.391506 AAGAAAATCCCAAGCAAGCAC 57.608 42.857 0.00 0.00 0.00 4.40
1459 1479 4.453819 CAGAATTCTGCTTCCGTTTCTTCT 59.546 41.667 21.96 0.00 37.15 2.85
1707 1736 2.426024 AGAGATGGCAATGTCAATGTGC 59.574 45.455 0.37 0.00 37.55 4.57
1712 1741 5.535783 TGAAAAGAAGAGATGGCAATGTCAA 59.464 36.000 0.37 0.00 0.00 3.18
1713 1742 5.072055 TGAAAAGAAGAGATGGCAATGTCA 58.928 37.500 0.37 0.00 0.00 3.58
1714 1743 5.633830 TGAAAAGAAGAGATGGCAATGTC 57.366 39.130 0.00 0.00 0.00 3.06
1752 1784 2.476185 GCACACACACACACAGAGAAAC 60.476 50.000 0.00 0.00 0.00 2.78
1759 1791 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
1762 1794 4.312231 ATGCGCGCACACACACAC 62.312 61.111 39.05 0.00 0.00 3.82
1786 1820 3.365265 CCACCAGCCCTTGCGAAC 61.365 66.667 0.00 0.00 44.33 3.95
1902 1936 3.181445 TGCAGCAGAAAGAAGGAAAGGTA 60.181 43.478 0.00 0.00 0.00 3.08
1920 1954 3.057019 TCAGTAAACAACGCTAGTGCAG 58.943 45.455 2.40 0.00 39.64 4.41
2039 2091 1.734465 GAAGAGTGAATCAACCTGGCG 59.266 52.381 0.00 0.00 0.00 5.69
2041 2093 4.013267 ACAGAAGAGTGAATCAACCTGG 57.987 45.455 0.00 0.00 0.00 4.45
2042 2094 4.320057 GCAACAGAAGAGTGAATCAACCTG 60.320 45.833 0.00 0.00 0.00 4.00
2128 2180 6.887626 ACGGCAACTTATTTCTCCTTAAAA 57.112 33.333 0.00 0.00 0.00 1.52
2241 2376 4.311606 TGCGTTTCATTAGTAGTTGCAGA 58.688 39.130 0.00 0.00 0.00 4.26
2346 2481 7.148590 GCACCTGATTACATTGATTGGTTTTTC 60.149 37.037 0.00 0.00 0.00 2.29
2353 2488 4.400251 ACCAGCACCTGATTACATTGATTG 59.600 41.667 0.00 0.00 32.44 2.67
2384 2519 6.048732 TGACAGCAAATTACCAGATACTCA 57.951 37.500 0.00 0.00 0.00 3.41
2385 2520 6.109359 ACTGACAGCAAATTACCAGATACTC 58.891 40.000 1.25 0.00 0.00 2.59
2386 2521 6.054860 ACTGACAGCAAATTACCAGATACT 57.945 37.500 1.25 0.00 0.00 2.12
2387 2522 7.042335 ACTACTGACAGCAAATTACCAGATAC 58.958 38.462 1.25 0.00 0.00 2.24
2508 2643 6.925610 TTGTTTGCTGAAGCCATATACTAG 57.074 37.500 0.00 0.00 41.18 2.57
2509 2644 6.657117 TGTTTGTTTGCTGAAGCCATATACTA 59.343 34.615 0.00 0.00 41.18 1.82
2510 2645 5.476599 TGTTTGTTTGCTGAAGCCATATACT 59.523 36.000 0.00 0.00 41.18 2.12
2511 2646 5.572896 GTGTTTGTTTGCTGAAGCCATATAC 59.427 40.000 0.00 0.00 41.18 1.47
2538 2673 6.300354 TCGAAAACAGAATCCAGAAGAAAC 57.700 37.500 0.00 0.00 0.00 2.78
2803 2987 2.471815 ACATTATGAGACGGAGGGGA 57.528 50.000 0.00 0.00 0.00 4.81
2830 3014 6.243811 AGACGTTTTGTGTAGTGTCAAAAA 57.756 33.333 0.00 0.00 42.46 1.94
2831 3015 5.866335 AGACGTTTTGTGTAGTGTCAAAA 57.134 34.783 0.00 0.00 39.93 2.44
2832 3016 5.866335 AAGACGTTTTGTGTAGTGTCAAA 57.134 34.783 0.00 0.00 32.75 2.69
2833 3017 5.868258 TGTAAGACGTTTTGTGTAGTGTCAA 59.132 36.000 0.83 0.00 0.00 3.18
2834 3018 5.409211 TGTAAGACGTTTTGTGTAGTGTCA 58.591 37.500 0.83 0.00 0.00 3.58
2835 3019 5.954434 TGTAAGACGTTTTGTGTAGTGTC 57.046 39.130 0.83 0.00 0.00 3.67
2836 3020 6.913873 AATGTAAGACGTTTTGTGTAGTGT 57.086 33.333 0.83 0.00 0.00 3.55
2837 3021 8.859788 CATAATGTAAGACGTTTTGTGTAGTG 57.140 34.615 0.83 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.