Multiple sequence alignment - TraesCS6B01G226400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G226400 chr6B 100.000 2312 0 0 1 2312 348659341 348657030 0.000000e+00 4270.0
1 TraesCS6B01G226400 chr6B 99.222 1929 15 0 1 1929 348687218 348689146 0.000000e+00 3480.0
2 TraesCS6B01G226400 chr6A 89.032 1322 45 36 467 1732 322984638 322985915 0.000000e+00 1546.0
3 TraesCS6B01G226400 chr6A 82.600 477 63 10 1 458 322982320 322982795 9.950000e-109 403.0
4 TraesCS6B01G226400 chr6A 93.820 178 11 0 1736 1913 322993587 322993764 3.790000e-68 268.0
5 TraesCS6B01G226400 chr6D 89.127 1260 47 31 466 1669 262290482 262289257 0.000000e+00 1485.0
6 TraesCS6B01G226400 chr6D 90.840 262 20 1 1654 1915 262278218 262277961 4.730000e-92 348.0
7 TraesCS6B01G226400 chr6D 81.924 343 57 3 2 339 461525388 461525046 3.760000e-73 285.0
8 TraesCS6B01G226400 chr6D 84.556 259 37 3 87 342 305268722 305268980 1.060000e-63 254.0
9 TraesCS6B01G226400 chr2B 96.639 357 12 0 1956 2312 413090496 413090852 5.500000e-166 593.0
10 TraesCS6B01G226400 chr2B 96.639 357 12 0 1956 2312 413119082 413119438 5.500000e-166 593.0
11 TraesCS6B01G226400 chr2B 95.798 357 14 1 1956 2312 620575372 620575727 1.990000e-160 575.0
12 TraesCS6B01G226400 chr7B 96.359 357 13 0 1956 2312 586612521 586612165 2.560000e-164 588.0
13 TraesCS6B01G226400 chr7B 95.518 357 16 0 1956 2312 89403351 89403707 2.580000e-159 571.0
14 TraesCS6B01G226400 chr5B 96.348 356 13 0 1956 2311 603679724 603680079 9.200000e-164 586.0
15 TraesCS6B01G226400 chr5B 95.810 358 12 3 1956 2311 490194089 490194445 1.990000e-160 575.0
16 TraesCS6B01G226400 chr5B 95.518 357 15 1 1956 2312 615110832 615111187 9.270000e-159 569.0
17 TraesCS6B01G226400 chr5B 81.844 347 55 3 1 341 496814192 496814536 3.760000e-73 285.0
18 TraesCS6B01G226400 chr5B 81.902 326 54 5 2 324 478410919 478410596 1.050000e-68 270.0
19 TraesCS6B01G226400 chr4B 95.798 357 14 1 1956 2312 578692083 578692438 1.990000e-160 575.0
20 TraesCS6B01G226400 chr2A 85.088 342 47 4 1 340 656840461 656840122 1.700000e-91 346.0
21 TraesCS6B01G226400 chr5D 83.284 341 53 4 2 340 360549743 360549405 6.200000e-81 311.0
22 TraesCS6B01G226400 chr4A 82.558 344 51 6 1 341 690190995 690190658 6.250000e-76 294.0
23 TraesCS6B01G226400 chr3B 88.462 78 8 1 1 78 719919807 719919883 2.450000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G226400 chr6B 348657030 348659341 2311 True 4270.0 4270 100.000 1 2312 1 chr6B.!!$R1 2311
1 TraesCS6B01G226400 chr6B 348687218 348689146 1928 False 3480.0 3480 99.222 1 1929 1 chr6B.!!$F1 1928
2 TraesCS6B01G226400 chr6A 322982320 322985915 3595 False 974.5 1546 85.816 1 1732 2 chr6A.!!$F2 1731
3 TraesCS6B01G226400 chr6D 262289257 262290482 1225 True 1485.0 1485 89.127 466 1669 1 chr6D.!!$R2 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 239 2.420687 GGATTCGAGGCACCAGAAATCT 60.421 50.0 2.48 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 3865 0.103937 GGAAGCTCCGATCAGTGAGG 59.896 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.729479 CGACCTGAGGAGCTGGCAT 61.729 63.158 4.99 0.00 39.08 4.40
237 239 2.420687 GGATTCGAGGCACCAGAAATCT 60.421 50.000 2.48 0.00 0.00 2.40
1323 3202 2.288961 ACGCGTAGGATTGTGTAAGG 57.711 50.000 11.67 0.00 0.00 2.69
1852 3780 7.896274 CGGTTAACTCTAAATTTGATGTACACG 59.104 37.037 5.42 0.00 0.00 4.49
1859 3787 0.687920 TTTGATGTACACGGGGCTGA 59.312 50.000 0.00 0.00 0.00 4.26
1929 3857 1.671261 CGGAGCTTCCTCACTGAACAG 60.671 57.143 0.00 0.00 39.96 3.16
1930 3858 1.620819 GGAGCTTCCTCACTGAACAGA 59.379 52.381 8.87 0.00 39.96 3.41
1931 3859 2.353605 GGAGCTTCCTCACTGAACAGAG 60.354 54.545 8.87 0.86 39.96 3.35
1932 3860 2.560542 GAGCTTCCTCACTGAACAGAGA 59.439 50.000 8.87 5.39 38.03 3.10
1933 3861 2.562298 AGCTTCCTCACTGAACAGAGAG 59.438 50.000 17.73 17.73 43.05 3.20
1934 3862 2.930455 GCTTCCTCACTGAACAGAGAGC 60.930 54.545 18.76 8.76 42.39 4.09
1935 3863 2.300956 TCCTCACTGAACAGAGAGCT 57.699 50.000 18.76 0.00 42.39 4.09
1936 3864 2.603021 TCCTCACTGAACAGAGAGCTT 58.397 47.619 18.76 0.00 42.39 3.74
1937 3865 2.560542 TCCTCACTGAACAGAGAGCTTC 59.439 50.000 18.76 0.00 42.39 3.86
1938 3866 2.353605 CCTCACTGAACAGAGAGCTTCC 60.354 54.545 18.76 0.00 42.39 3.46
1939 3867 2.562298 CTCACTGAACAGAGAGCTTCCT 59.438 50.000 14.06 0.00 38.82 3.36
1940 3868 2.560542 TCACTGAACAGAGAGCTTCCTC 59.439 50.000 8.87 0.00 38.42 3.71
1941 3869 2.298446 CACTGAACAGAGAGCTTCCTCA 59.702 50.000 8.87 0.98 40.68 3.86
1942 3870 2.298729 ACTGAACAGAGAGCTTCCTCAC 59.701 50.000 8.87 0.00 40.68 3.51
1943 3871 2.562298 CTGAACAGAGAGCTTCCTCACT 59.438 50.000 5.32 0.00 40.68 3.41
1948 3876 2.023673 AGAGAGCTTCCTCACTGATCG 58.976 52.381 5.32 0.00 40.68 3.69
1949 3877 1.066908 GAGAGCTTCCTCACTGATCGG 59.933 57.143 0.00 0.00 40.68 4.18
1950 3878 1.107114 GAGCTTCCTCACTGATCGGA 58.893 55.000 9.00 0.00 38.03 4.55
1951 3879 1.066908 GAGCTTCCTCACTGATCGGAG 59.933 57.143 9.00 0.00 38.03 4.63
1952 3880 0.529555 GCTTCCTCACTGATCGGAGC 60.530 60.000 9.00 1.42 0.00 4.70
1953 3881 1.110442 CTTCCTCACTGATCGGAGCT 58.890 55.000 9.00 0.00 0.00 4.09
1954 3882 1.480137 CTTCCTCACTGATCGGAGCTT 59.520 52.381 9.00 0.00 0.00 3.74
1955 3883 1.107114 TCCTCACTGATCGGAGCTTC 58.893 55.000 9.00 0.00 0.00 3.86
1956 3884 0.103937 CCTCACTGATCGGAGCTTCC 59.896 60.000 9.00 0.00 0.00 3.46
1957 3885 0.820226 CTCACTGATCGGAGCTTCCA 59.180 55.000 9.00 0.00 35.91 3.53
1958 3886 1.205655 CTCACTGATCGGAGCTTCCAA 59.794 52.381 9.00 0.00 35.91 3.53
1959 3887 1.623311 TCACTGATCGGAGCTTCCAAA 59.377 47.619 9.00 0.00 35.91 3.28
1960 3888 2.038426 TCACTGATCGGAGCTTCCAAAA 59.962 45.455 9.00 0.00 35.91 2.44
1961 3889 2.813754 CACTGATCGGAGCTTCCAAAAA 59.186 45.455 9.00 0.00 35.91 1.94
1962 3890 3.441572 CACTGATCGGAGCTTCCAAAAAT 59.558 43.478 9.00 0.00 35.91 1.82
1963 3891 4.635765 CACTGATCGGAGCTTCCAAAAATA 59.364 41.667 9.00 0.00 35.91 1.40
1964 3892 5.123820 CACTGATCGGAGCTTCCAAAAATAA 59.876 40.000 9.00 0.00 35.91 1.40
1965 3893 5.888161 ACTGATCGGAGCTTCCAAAAATAAT 59.112 36.000 9.00 0.00 35.91 1.28
1966 3894 7.012327 CACTGATCGGAGCTTCCAAAAATAATA 59.988 37.037 9.00 0.00 35.91 0.98
1967 3895 7.721399 ACTGATCGGAGCTTCCAAAAATAATAT 59.279 33.333 9.00 0.00 35.91 1.28
1968 3896 9.219603 CTGATCGGAGCTTCCAAAAATAATATA 57.780 33.333 0.00 0.00 35.91 0.86
1969 3897 9.567776 TGATCGGAGCTTCCAAAAATAATATAA 57.432 29.630 0.00 0.00 35.91 0.98
2006 3934 8.706322 AAAGTCTATAAACATCCAAAACAGGT 57.294 30.769 0.00 0.00 0.00 4.00
2007 3935 9.802039 AAAGTCTATAAACATCCAAAACAGGTA 57.198 29.630 0.00 0.00 0.00 3.08
2008 3936 9.802039 AAGTCTATAAACATCCAAAACAGGTAA 57.198 29.630 0.00 0.00 0.00 2.85
2009 3937 9.975218 AGTCTATAAACATCCAAAACAGGTAAT 57.025 29.630 0.00 0.00 0.00 1.89
2018 3946 9.860650 ACATCCAAAACAGGTAATATAATAGCA 57.139 29.630 0.17 0.00 0.00 3.49
2021 3949 9.295825 TCCAAAACAGGTAATATAATAGCATGG 57.704 33.333 0.00 0.00 0.00 3.66
2022 3950 9.295825 CCAAAACAGGTAATATAATAGCATGGA 57.704 33.333 0.00 0.00 0.00 3.41
2061 3989 3.858040 CGTTGCAGACGTATCAAGC 57.142 52.632 11.62 0.00 46.49 4.01
2062 3990 1.067693 CGTTGCAGACGTATCAAGCA 58.932 50.000 11.62 0.00 46.49 3.91
2063 3991 1.660607 CGTTGCAGACGTATCAAGCAT 59.339 47.619 11.62 0.00 46.49 3.79
2064 3992 2.285256 CGTTGCAGACGTATCAAGCATC 60.285 50.000 11.62 0.00 46.49 3.91
2065 3993 1.939974 TGCAGACGTATCAAGCATCC 58.060 50.000 0.00 0.00 34.42 3.51
2066 3994 1.221414 GCAGACGTATCAAGCATCCC 58.779 55.000 0.00 0.00 0.00 3.85
2067 3995 1.871080 CAGACGTATCAAGCATCCCC 58.129 55.000 0.00 0.00 0.00 4.81
2068 3996 1.138859 CAGACGTATCAAGCATCCCCA 59.861 52.381 0.00 0.00 0.00 4.96
2069 3997 1.837439 AGACGTATCAAGCATCCCCAA 59.163 47.619 0.00 0.00 0.00 4.12
2070 3998 2.238646 AGACGTATCAAGCATCCCCAAA 59.761 45.455 0.00 0.00 0.00 3.28
2071 3999 2.354821 GACGTATCAAGCATCCCCAAAC 59.645 50.000 0.00 0.00 0.00 2.93
2072 4000 2.026262 ACGTATCAAGCATCCCCAAACT 60.026 45.455 0.00 0.00 0.00 2.66
2073 4001 3.016736 CGTATCAAGCATCCCCAAACTT 58.983 45.455 0.00 0.00 0.00 2.66
2074 4002 4.196193 CGTATCAAGCATCCCCAAACTTA 58.804 43.478 0.00 0.00 0.00 2.24
2075 4003 4.638421 CGTATCAAGCATCCCCAAACTTAA 59.362 41.667 0.00 0.00 0.00 1.85
2076 4004 5.299279 CGTATCAAGCATCCCCAAACTTAAT 59.701 40.000 0.00 0.00 0.00 1.40
2077 4005 6.183360 CGTATCAAGCATCCCCAAACTTAATT 60.183 38.462 0.00 0.00 0.00 1.40
2078 4006 5.659440 TCAAGCATCCCCAAACTTAATTC 57.341 39.130 0.00 0.00 0.00 2.17
2079 4007 4.466015 TCAAGCATCCCCAAACTTAATTCC 59.534 41.667 0.00 0.00 0.00 3.01
2080 4008 4.337264 AGCATCCCCAAACTTAATTCCT 57.663 40.909 0.00 0.00 0.00 3.36
2081 4009 4.026052 AGCATCCCCAAACTTAATTCCTG 58.974 43.478 0.00 0.00 0.00 3.86
2082 4010 3.430790 GCATCCCCAAACTTAATTCCTGC 60.431 47.826 0.00 0.00 0.00 4.85
2083 4011 3.825908 TCCCCAAACTTAATTCCTGCT 57.174 42.857 0.00 0.00 0.00 4.24
2084 4012 3.697166 TCCCCAAACTTAATTCCTGCTC 58.303 45.455 0.00 0.00 0.00 4.26
2085 4013 2.423538 CCCCAAACTTAATTCCTGCTCG 59.576 50.000 0.00 0.00 0.00 5.03
2086 4014 3.081804 CCCAAACTTAATTCCTGCTCGT 58.918 45.455 0.00 0.00 0.00 4.18
2087 4015 3.127030 CCCAAACTTAATTCCTGCTCGTC 59.873 47.826 0.00 0.00 0.00 4.20
2088 4016 3.127030 CCAAACTTAATTCCTGCTCGTCC 59.873 47.826 0.00 0.00 0.00 4.79
2089 4017 3.983044 AACTTAATTCCTGCTCGTCCT 57.017 42.857 0.00 0.00 0.00 3.85
2090 4018 3.528597 ACTTAATTCCTGCTCGTCCTC 57.471 47.619 0.00 0.00 0.00 3.71
2091 4019 2.159226 ACTTAATTCCTGCTCGTCCTCG 60.159 50.000 0.00 0.00 38.55 4.63
2092 4020 1.758936 TAATTCCTGCTCGTCCTCGA 58.241 50.000 0.00 0.00 44.12 4.04
2104 4032 3.877559 TCGTCCTCGAGTAGGTAAATGA 58.122 45.455 12.31 0.00 46.62 2.57
2105 4033 4.458397 TCGTCCTCGAGTAGGTAAATGAT 58.542 43.478 12.31 0.00 46.62 2.45
2106 4034 5.614308 TCGTCCTCGAGTAGGTAAATGATA 58.386 41.667 12.31 0.00 46.62 2.15
2107 4035 6.057533 TCGTCCTCGAGTAGGTAAATGATAA 58.942 40.000 12.31 0.00 46.62 1.75
2108 4036 6.543465 TCGTCCTCGAGTAGGTAAATGATAAA 59.457 38.462 12.31 0.00 46.62 1.40
2109 4037 7.067372 TCGTCCTCGAGTAGGTAAATGATAAAA 59.933 37.037 12.31 0.00 46.62 1.52
2110 4038 7.703621 CGTCCTCGAGTAGGTAAATGATAAAAA 59.296 37.037 12.31 0.00 46.62 1.94
2111 4039 8.815189 GTCCTCGAGTAGGTAAATGATAAAAAC 58.185 37.037 12.31 0.00 46.62 2.43
2112 4040 8.533657 TCCTCGAGTAGGTAAATGATAAAAACA 58.466 33.333 12.31 0.00 46.62 2.83
2113 4041 8.818057 CCTCGAGTAGGTAAATGATAAAAACAG 58.182 37.037 12.31 0.00 40.94 3.16
2114 4042 9.582431 CTCGAGTAGGTAAATGATAAAAACAGA 57.418 33.333 3.62 0.00 0.00 3.41
2115 4043 9.932207 TCGAGTAGGTAAATGATAAAAACAGAA 57.068 29.630 0.00 0.00 0.00 3.02
2132 4060 6.790285 AACAGAATTTTTGATGTGGAATGC 57.210 33.333 0.00 0.00 0.00 3.56
2133 4061 6.105397 ACAGAATTTTTGATGTGGAATGCT 57.895 33.333 0.00 0.00 0.00 3.79
2134 4062 7.230849 ACAGAATTTTTGATGTGGAATGCTA 57.769 32.000 0.00 0.00 0.00 3.49
2135 4063 7.092716 ACAGAATTTTTGATGTGGAATGCTAC 58.907 34.615 0.00 0.00 0.00 3.58
2136 4064 6.532657 CAGAATTTTTGATGTGGAATGCTACC 59.467 38.462 0.00 0.00 0.00 3.18
2137 4065 6.438425 AGAATTTTTGATGTGGAATGCTACCT 59.562 34.615 0.00 0.00 0.00 3.08
2138 4066 7.615365 AGAATTTTTGATGTGGAATGCTACCTA 59.385 33.333 0.00 0.00 0.00 3.08
2139 4067 6.757897 TTTTTGATGTGGAATGCTACCTAG 57.242 37.500 0.00 0.00 0.00 3.02
2158 4086 9.988815 CTACCTAGCATAATTCTCAATGTAACT 57.011 33.333 0.00 0.00 0.00 2.24
2160 4088 9.686683 ACCTAGCATAATTCTCAATGTAACTTT 57.313 29.630 0.00 0.00 0.00 2.66
2172 4100 8.296713 TCTCAATGTAACTTTCTTTATTGTGGC 58.703 33.333 0.00 0.00 0.00 5.01
2173 4101 7.946207 TCAATGTAACTTTCTTTATTGTGGCA 58.054 30.769 0.00 0.00 0.00 4.92
2174 4102 8.584157 TCAATGTAACTTTCTTTATTGTGGCAT 58.416 29.630 0.00 0.00 0.00 4.40
2175 4103 8.649841 CAATGTAACTTTCTTTATTGTGGCATG 58.350 33.333 0.00 0.00 0.00 4.06
2176 4104 7.517614 TGTAACTTTCTTTATTGTGGCATGA 57.482 32.000 0.00 0.00 0.00 3.07
2177 4105 7.946207 TGTAACTTTCTTTATTGTGGCATGAA 58.054 30.769 0.00 0.00 0.00 2.57
2178 4106 8.584157 TGTAACTTTCTTTATTGTGGCATGAAT 58.416 29.630 0.00 0.00 0.00 2.57
2179 4107 7.894376 AACTTTCTTTATTGTGGCATGAATG 57.106 32.000 0.00 0.00 0.00 2.67
2180 4108 6.996509 ACTTTCTTTATTGTGGCATGAATGT 58.003 32.000 0.00 0.00 0.00 2.71
2181 4109 7.444299 ACTTTCTTTATTGTGGCATGAATGTT 58.556 30.769 0.00 0.00 0.00 2.71
2182 4110 7.599998 ACTTTCTTTATTGTGGCATGAATGTTC 59.400 33.333 0.00 0.00 0.00 3.18
2183 4111 6.587206 TCTTTATTGTGGCATGAATGTTCA 57.413 33.333 0.00 0.00 42.14 3.18
2184 4112 6.623486 TCTTTATTGTGGCATGAATGTTCAG 58.377 36.000 0.00 0.00 41.08 3.02
2185 4113 6.433716 TCTTTATTGTGGCATGAATGTTCAGA 59.566 34.615 0.00 0.00 41.08 3.27
2186 4114 6.778834 TTATTGTGGCATGAATGTTCAGAT 57.221 33.333 0.00 0.00 41.08 2.90
2187 4115 4.707030 TTGTGGCATGAATGTTCAGATC 57.293 40.909 0.00 0.00 41.08 2.75
2188 4116 3.018856 TGTGGCATGAATGTTCAGATCC 58.981 45.455 0.00 3.44 41.08 3.36
2189 4117 3.018856 GTGGCATGAATGTTCAGATCCA 58.981 45.455 0.00 5.68 41.08 3.41
2190 4118 3.444742 GTGGCATGAATGTTCAGATCCAA 59.555 43.478 0.00 0.00 41.08 3.53
2191 4119 4.082081 GTGGCATGAATGTTCAGATCCAAA 60.082 41.667 0.00 0.00 41.08 3.28
2192 4120 4.712829 TGGCATGAATGTTCAGATCCAAAT 59.287 37.500 0.00 0.00 41.08 2.32
2193 4121 5.892686 TGGCATGAATGTTCAGATCCAAATA 59.107 36.000 0.00 0.00 41.08 1.40
2194 4122 6.380560 TGGCATGAATGTTCAGATCCAAATAA 59.619 34.615 0.00 0.00 41.08 1.40
2195 4123 7.070198 TGGCATGAATGTTCAGATCCAAATAAT 59.930 33.333 0.00 0.00 41.08 1.28
2196 4124 7.929785 GGCATGAATGTTCAGATCCAAATAATT 59.070 33.333 0.00 0.00 41.08 1.40
2197 4125 8.975439 GCATGAATGTTCAGATCCAAATAATTC 58.025 33.333 0.00 0.32 41.08 2.17
2259 4187 8.629158 ACTTCAAACATACTAACAAAGCAATCA 58.371 29.630 0.00 0.00 0.00 2.57
2260 4188 9.630098 CTTCAAACATACTAACAAAGCAATCAT 57.370 29.630 0.00 0.00 0.00 2.45
2261 4189 8.969121 TCAAACATACTAACAAAGCAATCATG 57.031 30.769 0.00 0.00 0.00 3.07
2262 4190 8.575589 TCAAACATACTAACAAAGCAATCATGT 58.424 29.630 0.00 0.00 0.00 3.21
2263 4191 8.853345 CAAACATACTAACAAAGCAATCATGTC 58.147 33.333 0.00 0.00 0.00 3.06
2264 4192 7.928307 ACATACTAACAAAGCAATCATGTCT 57.072 32.000 0.00 0.00 0.00 3.41
2265 4193 8.340618 ACATACTAACAAAGCAATCATGTCTT 57.659 30.769 0.00 0.00 0.00 3.01
2266 4194 8.454106 ACATACTAACAAAGCAATCATGTCTTC 58.546 33.333 0.00 0.00 0.00 2.87
2267 4195 8.671921 CATACTAACAAAGCAATCATGTCTTCT 58.328 33.333 0.00 0.00 0.00 2.85
2268 4196 7.138692 ACTAACAAAGCAATCATGTCTTCTC 57.861 36.000 0.00 0.00 0.00 2.87
2269 4197 6.712095 ACTAACAAAGCAATCATGTCTTCTCA 59.288 34.615 0.00 0.00 0.00 3.27
2270 4198 6.395426 AACAAAGCAATCATGTCTTCTCAA 57.605 33.333 0.00 0.00 0.00 3.02
2271 4199 6.395426 ACAAAGCAATCATGTCTTCTCAAA 57.605 33.333 0.00 0.00 0.00 2.69
2272 4200 6.808829 ACAAAGCAATCATGTCTTCTCAAAA 58.191 32.000 0.00 0.00 0.00 2.44
2273 4201 7.439381 ACAAAGCAATCATGTCTTCTCAAAAT 58.561 30.769 0.00 0.00 0.00 1.82
2274 4202 8.579006 ACAAAGCAATCATGTCTTCTCAAAATA 58.421 29.630 0.00 0.00 0.00 1.40
2275 4203 9.582431 CAAAGCAATCATGTCTTCTCAAAATAT 57.418 29.630 0.00 0.00 0.00 1.28
2276 4204 9.798994 AAAGCAATCATGTCTTCTCAAAATATC 57.201 29.630 0.00 0.00 0.00 1.63
2277 4205 8.515695 AGCAATCATGTCTTCTCAAAATATCA 57.484 30.769 0.00 0.00 0.00 2.15
2278 4206 9.132923 AGCAATCATGTCTTCTCAAAATATCAT 57.867 29.630 0.00 0.00 0.00 2.45
2279 4207 9.181805 GCAATCATGTCTTCTCAAAATATCATG 57.818 33.333 0.00 0.00 34.62 3.07
2280 4208 9.678941 CAATCATGTCTTCTCAAAATATCATGG 57.321 33.333 0.00 0.00 34.26 3.66
2281 4209 7.268199 TCATGTCTTCTCAAAATATCATGGC 57.732 36.000 0.00 0.00 34.26 4.40
2282 4210 6.263842 TCATGTCTTCTCAAAATATCATGGCC 59.736 38.462 0.00 0.00 34.26 5.36
2283 4211 5.508567 TGTCTTCTCAAAATATCATGGCCA 58.491 37.500 8.56 8.56 0.00 5.36
2284 4212 5.951148 TGTCTTCTCAAAATATCATGGCCAA 59.049 36.000 10.96 0.00 0.00 4.52
2285 4213 6.436847 TGTCTTCTCAAAATATCATGGCCAAA 59.563 34.615 10.96 0.17 0.00 3.28
2286 4214 6.976925 GTCTTCTCAAAATATCATGGCCAAAG 59.023 38.462 10.96 5.73 0.00 2.77
2287 4215 6.891361 TCTTCTCAAAATATCATGGCCAAAGA 59.109 34.615 10.96 12.23 0.00 2.52
2288 4216 7.396907 TCTTCTCAAAATATCATGGCCAAAGAA 59.603 33.333 10.96 5.57 0.00 2.52
2289 4217 7.479352 TCTCAAAATATCATGGCCAAAGAAA 57.521 32.000 10.96 0.00 0.00 2.52
2290 4218 7.549839 TCTCAAAATATCATGGCCAAAGAAAG 58.450 34.615 10.96 0.00 0.00 2.62
2291 4219 6.108015 TCAAAATATCATGGCCAAAGAAAGC 58.892 36.000 10.96 0.00 0.00 3.51
2292 4220 5.945144 AAATATCATGGCCAAAGAAAGCT 57.055 34.783 10.96 0.00 0.00 3.74
2293 4221 5.945144 AATATCATGGCCAAAGAAAGCTT 57.055 34.783 10.96 0.00 35.37 3.74
2294 4222 7.422465 AAATATCATGGCCAAAGAAAGCTTA 57.578 32.000 10.96 0.24 32.98 3.09
2295 4223 7.607615 AATATCATGGCCAAAGAAAGCTTAT 57.392 32.000 10.96 2.78 32.98 1.73
2296 4224 4.989279 TCATGGCCAAAGAAAGCTTATC 57.011 40.909 10.96 0.00 32.98 1.75
2297 4225 3.701040 TCATGGCCAAAGAAAGCTTATCC 59.299 43.478 10.96 0.00 32.98 2.59
2298 4226 2.456577 TGGCCAAAGAAAGCTTATCCC 58.543 47.619 0.61 0.00 32.98 3.85
2299 4227 2.042979 TGGCCAAAGAAAGCTTATCCCT 59.957 45.455 0.61 0.00 32.98 4.20
2300 4228 3.268334 TGGCCAAAGAAAGCTTATCCCTA 59.732 43.478 0.61 0.00 32.98 3.53
2301 4229 3.632604 GGCCAAAGAAAGCTTATCCCTAC 59.367 47.826 0.00 0.00 32.98 3.18
2302 4230 4.270008 GCCAAAGAAAGCTTATCCCTACA 58.730 43.478 0.00 0.00 32.98 2.74
2303 4231 4.705023 GCCAAAGAAAGCTTATCCCTACAA 59.295 41.667 0.00 0.00 32.98 2.41
2304 4232 5.185056 GCCAAAGAAAGCTTATCCCTACAAA 59.815 40.000 0.00 0.00 32.98 2.83
2305 4233 6.295067 GCCAAAGAAAGCTTATCCCTACAAAA 60.295 38.462 0.00 0.00 32.98 2.44
2306 4234 7.579531 GCCAAAGAAAGCTTATCCCTACAAAAT 60.580 37.037 0.00 0.00 32.98 1.82
2307 4235 7.976175 CCAAAGAAAGCTTATCCCTACAAAATC 59.024 37.037 0.00 0.00 32.98 2.17
2308 4236 8.522830 CAAAGAAAGCTTATCCCTACAAAATCA 58.477 33.333 0.00 0.00 32.98 2.57
2309 4237 8.829373 AAGAAAGCTTATCCCTACAAAATCAT 57.171 30.769 0.00 0.00 31.07 2.45
2310 4238 9.920946 AAGAAAGCTTATCCCTACAAAATCATA 57.079 29.630 0.00 0.00 31.07 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1323 3202 1.689352 CGCAACCCCAATCGTACGTC 61.689 60.000 16.05 0.00 0.00 4.34
1490 3392 4.675565 CCGAGAATGCTACAGTACATAACG 59.324 45.833 0.00 0.00 0.00 3.18
1710 3638 2.255406 AGACATTCTCAGTGCTCACCT 58.745 47.619 0.00 0.00 0.00 4.00
1859 3787 3.093814 TCTGTTGCCATGCTGAATTCAT 58.906 40.909 8.96 0.00 0.00 2.57
1868 3796 1.000060 TGAAGCTTTCTGTTGCCATGC 60.000 47.619 0.00 0.00 0.00 4.06
1929 3857 1.066908 CCGATCAGTGAGGAAGCTCTC 59.933 57.143 0.00 0.00 0.00 3.20
1930 3858 1.110442 CCGATCAGTGAGGAAGCTCT 58.890 55.000 0.00 0.00 0.00 4.09
1931 3859 1.066908 CTCCGATCAGTGAGGAAGCTC 59.933 57.143 0.00 0.00 33.10 4.09
1932 3860 1.110442 CTCCGATCAGTGAGGAAGCT 58.890 55.000 0.00 0.00 33.10 3.74
1933 3861 0.529555 GCTCCGATCAGTGAGGAAGC 60.530 60.000 0.00 1.57 33.10 3.86
1934 3862 1.110442 AGCTCCGATCAGTGAGGAAG 58.890 55.000 0.00 0.00 33.10 3.46
1935 3863 1.478510 GAAGCTCCGATCAGTGAGGAA 59.521 52.381 0.00 0.00 33.10 3.36
1936 3864 1.107114 GAAGCTCCGATCAGTGAGGA 58.893 55.000 0.00 0.00 0.00 3.71
1937 3865 0.103937 GGAAGCTCCGATCAGTGAGG 59.896 60.000 0.00 0.00 0.00 3.86
1938 3866 0.820226 TGGAAGCTCCGATCAGTGAG 59.180 55.000 0.00 0.00 40.17 3.51
1939 3867 1.266178 TTGGAAGCTCCGATCAGTGA 58.734 50.000 0.00 0.00 40.17 3.41
1940 3868 2.099141 TTTGGAAGCTCCGATCAGTG 57.901 50.000 0.00 0.00 40.17 3.66
1941 3869 2.859165 TTTTGGAAGCTCCGATCAGT 57.141 45.000 0.00 0.00 40.17 3.41
1942 3870 5.818136 TTATTTTTGGAAGCTCCGATCAG 57.182 39.130 0.00 0.00 40.17 2.90
1943 3871 9.567776 TTATATTATTTTTGGAAGCTCCGATCA 57.432 29.630 0.00 0.00 40.17 2.92
1980 3908 9.802039 ACCTGTTTTGGATGTTTATAGACTTTA 57.198 29.630 0.00 0.00 0.00 1.85
1981 3909 8.706322 ACCTGTTTTGGATGTTTATAGACTTT 57.294 30.769 0.00 0.00 0.00 2.66
1982 3910 9.802039 TTACCTGTTTTGGATGTTTATAGACTT 57.198 29.630 0.00 0.00 0.00 3.01
1983 3911 9.975218 ATTACCTGTTTTGGATGTTTATAGACT 57.025 29.630 0.00 0.00 0.00 3.24
1992 3920 9.860650 TGCTATTATATTACCTGTTTTGGATGT 57.139 29.630 0.00 0.00 0.00 3.06
1995 3923 9.295825 CCATGCTATTATATTACCTGTTTTGGA 57.704 33.333 0.00 0.00 0.00 3.53
1996 3924 9.295825 TCCATGCTATTATATTACCTGTTTTGG 57.704 33.333 0.00 0.00 0.00 3.28
1999 3927 9.860650 TGTTCCATGCTATTATATTACCTGTTT 57.139 29.630 0.00 0.00 0.00 2.83
2000 3928 9.860650 TTGTTCCATGCTATTATATTACCTGTT 57.139 29.630 0.00 0.00 0.00 3.16
2044 3972 2.030946 GGATGCTTGATACGTCTGCAAC 59.969 50.000 0.00 0.00 37.77 4.17
2045 3973 2.279741 GGATGCTTGATACGTCTGCAA 58.720 47.619 0.00 0.00 37.77 4.08
2046 3974 1.473257 GGGATGCTTGATACGTCTGCA 60.473 52.381 0.00 0.00 38.27 4.41
2047 3975 1.221414 GGGATGCTTGATACGTCTGC 58.779 55.000 0.00 0.00 0.00 4.26
2048 3976 1.138859 TGGGGATGCTTGATACGTCTG 59.861 52.381 0.00 0.00 0.00 3.51
2049 3977 1.496060 TGGGGATGCTTGATACGTCT 58.504 50.000 0.00 0.00 0.00 4.18
2050 3978 2.325583 TTGGGGATGCTTGATACGTC 57.674 50.000 0.00 0.00 0.00 4.34
2051 3979 2.026262 AGTTTGGGGATGCTTGATACGT 60.026 45.455 0.00 0.00 0.00 3.57
2052 3980 2.643551 AGTTTGGGGATGCTTGATACG 58.356 47.619 0.00 0.00 0.00 3.06
2053 3981 6.715347 ATTAAGTTTGGGGATGCTTGATAC 57.285 37.500 0.00 0.00 0.00 2.24
2054 3982 6.323739 GGAATTAAGTTTGGGGATGCTTGATA 59.676 38.462 0.00 0.00 0.00 2.15
2055 3983 5.129320 GGAATTAAGTTTGGGGATGCTTGAT 59.871 40.000 0.00 0.00 0.00 2.57
2056 3984 4.466015 GGAATTAAGTTTGGGGATGCTTGA 59.534 41.667 0.00 0.00 0.00 3.02
2057 3985 4.467438 AGGAATTAAGTTTGGGGATGCTTG 59.533 41.667 0.00 0.00 0.00 4.01
2058 3986 4.467438 CAGGAATTAAGTTTGGGGATGCTT 59.533 41.667 0.00 0.00 0.00 3.91
2059 3987 4.026052 CAGGAATTAAGTTTGGGGATGCT 58.974 43.478 0.00 0.00 0.00 3.79
2060 3988 3.430790 GCAGGAATTAAGTTTGGGGATGC 60.431 47.826 0.00 0.00 0.00 3.91
2061 3989 4.026052 AGCAGGAATTAAGTTTGGGGATG 58.974 43.478 0.00 0.00 0.00 3.51
2062 3990 4.281657 GAGCAGGAATTAAGTTTGGGGAT 58.718 43.478 0.00 0.00 0.00 3.85
2063 3991 3.697166 GAGCAGGAATTAAGTTTGGGGA 58.303 45.455 0.00 0.00 0.00 4.81
2064 3992 2.423538 CGAGCAGGAATTAAGTTTGGGG 59.576 50.000 0.00 0.00 0.00 4.96
2065 3993 3.081804 ACGAGCAGGAATTAAGTTTGGG 58.918 45.455 0.00 0.00 0.00 4.12
2066 3994 3.127030 GGACGAGCAGGAATTAAGTTTGG 59.873 47.826 0.00 0.00 0.00 3.28
2067 3995 4.003648 AGGACGAGCAGGAATTAAGTTTG 58.996 43.478 0.00 0.00 0.00 2.93
2068 3996 4.254492 GAGGACGAGCAGGAATTAAGTTT 58.746 43.478 0.00 0.00 0.00 2.66
2069 3997 3.676324 CGAGGACGAGCAGGAATTAAGTT 60.676 47.826 0.00 0.00 42.66 2.66
2070 3998 2.159226 CGAGGACGAGCAGGAATTAAGT 60.159 50.000 0.00 0.00 42.66 2.24
2071 3999 2.099263 TCGAGGACGAGCAGGAATTAAG 59.901 50.000 0.00 0.00 43.81 1.85
2072 4000 2.097036 TCGAGGACGAGCAGGAATTAA 58.903 47.619 0.00 0.00 43.81 1.40
2073 4001 1.758936 TCGAGGACGAGCAGGAATTA 58.241 50.000 0.00 0.00 43.81 1.40
2074 4002 2.579878 TCGAGGACGAGCAGGAATT 58.420 52.632 0.00 0.00 43.81 2.17
2075 4003 4.338815 TCGAGGACGAGCAGGAAT 57.661 55.556 0.00 0.00 43.81 3.01
2088 4016 9.582431 TCTGTTTTTATCATTTACCTACTCGAG 57.418 33.333 11.84 11.84 0.00 4.04
2089 4017 9.932207 TTCTGTTTTTATCATTTACCTACTCGA 57.068 29.630 0.00 0.00 0.00 4.04
2106 4034 8.130469 GCATTCCACATCAAAAATTCTGTTTTT 58.870 29.630 0.00 0.00 32.38 1.94
2107 4035 7.499895 AGCATTCCACATCAAAAATTCTGTTTT 59.500 29.630 0.00 0.00 0.00 2.43
2108 4036 6.993902 AGCATTCCACATCAAAAATTCTGTTT 59.006 30.769 0.00 0.00 0.00 2.83
2109 4037 6.527423 AGCATTCCACATCAAAAATTCTGTT 58.473 32.000 0.00 0.00 0.00 3.16
2110 4038 6.105397 AGCATTCCACATCAAAAATTCTGT 57.895 33.333 0.00 0.00 0.00 3.41
2111 4039 6.532657 GGTAGCATTCCACATCAAAAATTCTG 59.467 38.462 0.00 0.00 0.00 3.02
2112 4040 6.438425 AGGTAGCATTCCACATCAAAAATTCT 59.562 34.615 0.00 0.00 0.00 2.40
2113 4041 6.633856 AGGTAGCATTCCACATCAAAAATTC 58.366 36.000 0.00 0.00 0.00 2.17
2114 4042 6.610075 AGGTAGCATTCCACATCAAAAATT 57.390 33.333 0.00 0.00 0.00 1.82
2115 4043 7.338800 CTAGGTAGCATTCCACATCAAAAAT 57.661 36.000 0.00 0.00 0.00 1.82
2116 4044 6.757897 CTAGGTAGCATTCCACATCAAAAA 57.242 37.500 0.00 0.00 0.00 1.94
2132 4060 9.988815 AGTTACATTGAGAATTATGCTAGGTAG 57.011 33.333 0.00 0.00 0.00 3.18
2134 4062 9.686683 AAAGTTACATTGAGAATTATGCTAGGT 57.313 29.630 0.00 0.00 0.00 3.08
2146 4074 8.296713 GCCACAATAAAGAAAGTTACATTGAGA 58.703 33.333 0.00 0.00 0.00 3.27
2147 4075 8.081633 TGCCACAATAAAGAAAGTTACATTGAG 58.918 33.333 0.00 0.00 0.00 3.02
2148 4076 7.946207 TGCCACAATAAAGAAAGTTACATTGA 58.054 30.769 0.00 0.00 0.00 2.57
2149 4077 8.649841 CATGCCACAATAAAGAAAGTTACATTG 58.350 33.333 0.00 0.00 0.00 2.82
2150 4078 8.584157 TCATGCCACAATAAAGAAAGTTACATT 58.416 29.630 0.00 0.00 0.00 2.71
2151 4079 8.121305 TCATGCCACAATAAAGAAAGTTACAT 57.879 30.769 0.00 0.00 0.00 2.29
2152 4080 7.517614 TCATGCCACAATAAAGAAAGTTACA 57.482 32.000 0.00 0.00 0.00 2.41
2153 4081 8.863049 CATTCATGCCACAATAAAGAAAGTTAC 58.137 33.333 0.00 0.00 0.00 2.50
2154 4082 8.584157 ACATTCATGCCACAATAAAGAAAGTTA 58.416 29.630 0.00 0.00 0.00 2.24
2155 4083 7.444299 ACATTCATGCCACAATAAAGAAAGTT 58.556 30.769 0.00 0.00 0.00 2.66
2156 4084 6.996509 ACATTCATGCCACAATAAAGAAAGT 58.003 32.000 0.00 0.00 0.00 2.66
2157 4085 7.599621 TGAACATTCATGCCACAATAAAGAAAG 59.400 33.333 0.00 0.00 31.01 2.62
2158 4086 7.440198 TGAACATTCATGCCACAATAAAGAAA 58.560 30.769 0.00 0.00 31.01 2.52
2159 4087 6.990798 TGAACATTCATGCCACAATAAAGAA 58.009 32.000 0.00 0.00 31.01 2.52
2160 4088 6.433716 TCTGAACATTCATGCCACAATAAAGA 59.566 34.615 0.00 0.00 36.46 2.52
2161 4089 6.623486 TCTGAACATTCATGCCACAATAAAG 58.377 36.000 0.00 0.00 36.46 1.85
2162 4090 6.587206 TCTGAACATTCATGCCACAATAAA 57.413 33.333 0.00 0.00 36.46 1.40
2163 4091 6.183360 GGATCTGAACATTCATGCCACAATAA 60.183 38.462 0.00 0.00 36.46 1.40
2164 4092 5.300034 GGATCTGAACATTCATGCCACAATA 59.700 40.000 0.00 0.00 36.46 1.90
2165 4093 4.098960 GGATCTGAACATTCATGCCACAAT 59.901 41.667 0.00 0.00 36.46 2.71
2166 4094 3.444742 GGATCTGAACATTCATGCCACAA 59.555 43.478 0.00 0.00 36.46 3.33
2167 4095 3.018856 GGATCTGAACATTCATGCCACA 58.981 45.455 0.00 0.00 36.46 4.17
2168 4096 3.018856 TGGATCTGAACATTCATGCCAC 58.981 45.455 0.00 0.00 36.46 5.01
2169 4097 3.369242 TGGATCTGAACATTCATGCCA 57.631 42.857 0.00 1.19 36.46 4.92
2170 4098 4.724074 TTTGGATCTGAACATTCATGCC 57.276 40.909 0.00 0.00 36.46 4.40
2171 4099 8.882415 AATTATTTGGATCTGAACATTCATGC 57.118 30.769 0.00 0.00 36.46 4.06
2233 4161 8.629158 TGATTGCTTTGTTAGTATGTTTGAAGT 58.371 29.630 0.00 0.00 0.00 3.01
2234 4162 9.630098 ATGATTGCTTTGTTAGTATGTTTGAAG 57.370 29.630 0.00 0.00 0.00 3.02
2235 4163 9.409312 CATGATTGCTTTGTTAGTATGTTTGAA 57.591 29.630 0.00 0.00 0.00 2.69
2236 4164 8.575589 ACATGATTGCTTTGTTAGTATGTTTGA 58.424 29.630 0.00 0.00 0.00 2.69
2237 4165 8.746922 ACATGATTGCTTTGTTAGTATGTTTG 57.253 30.769 0.00 0.00 0.00 2.93
2238 4166 8.796475 AGACATGATTGCTTTGTTAGTATGTTT 58.204 29.630 0.00 0.00 0.00 2.83
2239 4167 8.340618 AGACATGATTGCTTTGTTAGTATGTT 57.659 30.769 0.00 0.00 0.00 2.71
2240 4168 7.928307 AGACATGATTGCTTTGTTAGTATGT 57.072 32.000 0.00 0.00 0.00 2.29
2241 4169 8.671921 AGAAGACATGATTGCTTTGTTAGTATG 58.328 33.333 0.00 0.00 0.00 2.39
2242 4170 8.798859 AGAAGACATGATTGCTTTGTTAGTAT 57.201 30.769 0.00 0.00 0.00 2.12
2243 4171 7.877612 TGAGAAGACATGATTGCTTTGTTAGTA 59.122 33.333 0.00 0.00 0.00 1.82
2244 4172 6.712095 TGAGAAGACATGATTGCTTTGTTAGT 59.288 34.615 0.00 0.00 0.00 2.24
2245 4173 7.137490 TGAGAAGACATGATTGCTTTGTTAG 57.863 36.000 0.00 0.00 0.00 2.34
2246 4174 7.509141 TTGAGAAGACATGATTGCTTTGTTA 57.491 32.000 0.00 0.00 0.00 2.41
2247 4175 6.395426 TTGAGAAGACATGATTGCTTTGTT 57.605 33.333 0.00 0.00 0.00 2.83
2248 4176 6.395426 TTTGAGAAGACATGATTGCTTTGT 57.605 33.333 0.00 0.00 0.00 2.83
2249 4177 7.884816 ATTTTGAGAAGACATGATTGCTTTG 57.115 32.000 0.00 0.00 0.00 2.77
2250 4178 9.798994 GATATTTTGAGAAGACATGATTGCTTT 57.201 29.630 0.00 0.00 0.00 3.51
2251 4179 8.963725 TGATATTTTGAGAAGACATGATTGCTT 58.036 29.630 0.00 0.00 0.00 3.91
2252 4180 8.515695 TGATATTTTGAGAAGACATGATTGCT 57.484 30.769 0.00 0.00 0.00 3.91
2253 4181 9.181805 CATGATATTTTGAGAAGACATGATTGC 57.818 33.333 0.00 0.00 36.87 3.56
2254 4182 9.678941 CCATGATATTTTGAGAAGACATGATTG 57.321 33.333 0.00 0.00 36.87 2.67
2255 4183 8.358148 GCCATGATATTTTGAGAAGACATGATT 58.642 33.333 0.00 0.00 36.87 2.57
2256 4184 7.039923 GGCCATGATATTTTGAGAAGACATGAT 60.040 37.037 0.00 0.00 36.87 2.45
2257 4185 6.263842 GGCCATGATATTTTGAGAAGACATGA 59.736 38.462 0.00 0.00 36.87 3.07
2258 4186 6.040054 TGGCCATGATATTTTGAGAAGACATG 59.960 38.462 0.00 0.00 35.26 3.21
2259 4187 6.131264 TGGCCATGATATTTTGAGAAGACAT 58.869 36.000 0.00 0.00 0.00 3.06
2260 4188 5.508567 TGGCCATGATATTTTGAGAAGACA 58.491 37.500 0.00 0.00 0.00 3.41
2261 4189 6.455360 TTGGCCATGATATTTTGAGAAGAC 57.545 37.500 6.09 0.00 0.00 3.01
2262 4190 6.891361 TCTTTGGCCATGATATTTTGAGAAGA 59.109 34.615 6.09 4.77 0.00 2.87
2263 4191 7.104043 TCTTTGGCCATGATATTTTGAGAAG 57.896 36.000 6.09 1.96 0.00 2.85
2264 4192 7.479352 TTCTTTGGCCATGATATTTTGAGAA 57.521 32.000 6.09 0.00 0.00 2.87
2265 4193 7.479352 TTTCTTTGGCCATGATATTTTGAGA 57.521 32.000 6.09 0.00 0.00 3.27
2266 4194 6.257193 GCTTTCTTTGGCCATGATATTTTGAG 59.743 38.462 6.09 0.00 0.00 3.02
2267 4195 6.070653 AGCTTTCTTTGGCCATGATATTTTGA 60.071 34.615 6.09 0.00 0.00 2.69
2268 4196 6.110707 AGCTTTCTTTGGCCATGATATTTTG 58.889 36.000 6.09 0.00 0.00 2.44
2269 4197 6.303903 AGCTTTCTTTGGCCATGATATTTT 57.696 33.333 6.09 0.00 0.00 1.82
2270 4198 5.945144 AGCTTTCTTTGGCCATGATATTT 57.055 34.783 6.09 0.00 0.00 1.40
2271 4199 5.945144 AAGCTTTCTTTGGCCATGATATT 57.055 34.783 6.09 0.00 0.00 1.28
2272 4200 6.210185 GGATAAGCTTTCTTTGGCCATGATAT 59.790 38.462 6.09 2.84 33.85 1.63
2273 4201 5.536161 GGATAAGCTTTCTTTGGCCATGATA 59.464 40.000 6.09 2.68 33.85 2.15
2274 4202 4.343239 GGATAAGCTTTCTTTGGCCATGAT 59.657 41.667 6.09 0.00 33.85 2.45
2275 4203 3.701040 GGATAAGCTTTCTTTGGCCATGA 59.299 43.478 6.09 5.41 33.85 3.07
2276 4204 3.181472 GGGATAAGCTTTCTTTGGCCATG 60.181 47.826 6.09 2.48 33.85 3.66
2277 4205 3.033909 GGGATAAGCTTTCTTTGGCCAT 58.966 45.455 6.09 0.00 33.85 4.40
2278 4206 2.042979 AGGGATAAGCTTTCTTTGGCCA 59.957 45.455 3.20 0.00 33.85 5.36
2279 4207 2.739943 AGGGATAAGCTTTCTTTGGCC 58.260 47.619 3.20 0.00 33.85 5.36
2280 4208 4.270008 TGTAGGGATAAGCTTTCTTTGGC 58.730 43.478 3.20 0.00 33.85 4.52
2281 4209 6.834168 TTTGTAGGGATAAGCTTTCTTTGG 57.166 37.500 3.20 0.00 33.85 3.28
2282 4210 8.522830 TGATTTTGTAGGGATAAGCTTTCTTTG 58.477 33.333 3.20 0.00 33.85 2.77
2283 4211 8.650143 TGATTTTGTAGGGATAAGCTTTCTTT 57.350 30.769 3.20 0.00 33.85 2.52
2284 4212 8.829373 ATGATTTTGTAGGGATAAGCTTTCTT 57.171 30.769 3.20 0.00 36.35 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.