Multiple sequence alignment - TraesCS6B01G226000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G226000 chr6B 100.000 6478 0 0 1 6478 347747135 347753612 0.000000e+00 11963.0
1 TraesCS6B01G226000 chr6B 99.057 106 1 0 1578 1683 347748606 347748711 2.380000e-44 191.0
2 TraesCS6B01G226000 chr6B 99.057 106 1 0 1472 1577 347748712 347748817 2.380000e-44 191.0
3 TraesCS6B01G226000 chr6B 96.970 33 1 0 6103 6135 602820732 602820700 1.000000e-03 56.5
4 TraesCS6B01G226000 chr6D 94.506 2166 89 16 1578 3714 262517345 262515181 0.000000e+00 3314.0
5 TraesCS6B01G226000 chr6D 93.753 2097 68 29 4036 6082 262514876 262512793 0.000000e+00 3088.0
6 TraesCS6B01G226000 chr6D 95.839 1586 54 9 1 1575 262518826 262517242 0.000000e+00 2553.0
7 TraesCS6B01G226000 chr6D 92.574 202 13 2 3712 3912 181729735 181729535 8.220000e-74 289.0
8 TraesCS6B01G226000 chr6D 82.201 309 24 12 6184 6478 262512595 262512304 3.020000e-58 237.0
9 TraesCS6B01G226000 chr6A 94.357 2162 77 21 1578 3714 322057964 322060105 0.000000e+00 3275.0
10 TraesCS6B01G226000 chr6A 95.286 1591 42 11 1 1577 322056498 322058069 0.000000e+00 2492.0
11 TraesCS6B01G226000 chr6A 97.403 1001 24 1 3908 4908 322060102 322061100 0.000000e+00 1703.0
12 TraesCS6B01G226000 chr6A 92.626 895 33 13 4999 5880 322061096 322061970 0.000000e+00 1256.0
13 TraesCS6B01G226000 chr6A 82.026 306 20 19 6184 6478 322062492 322062773 1.820000e-55 228.0
14 TraesCS6B01G226000 chr6A 82.584 178 25 5 6184 6360 548397548 548397376 1.120000e-32 152.0
15 TraesCS6B01G226000 chr6A 89.583 96 9 1 6184 6279 322062229 322062323 3.170000e-23 121.0
16 TraesCS6B01G226000 chr6A 84.762 105 11 3 4906 5009 198165988 198166088 4.130000e-17 100.0
17 TraesCS6B01G226000 chr3D 92.734 812 42 10 2908 3708 534053530 534052725 0.000000e+00 1157.0
18 TraesCS6B01G226000 chr3D 95.620 274 12 0 3908 4181 534052717 534052444 2.140000e-119 440.0
19 TraesCS6B01G226000 chr3D 91.943 211 15 2 3707 3916 317203391 317203600 1.770000e-75 294.0
20 TraesCS6B01G226000 chr1D 88.190 779 48 13 2941 3708 406702962 406703707 0.000000e+00 889.0
21 TraesCS6B01G226000 chr1D 96.350 274 10 0 3908 4181 406703715 406703988 9.900000e-123 451.0
22 TraesCS6B01G226000 chr1D 91.220 205 17 1 3712 3915 481698013 481697809 1.780000e-70 278.0
23 TraesCS6B01G226000 chrUn 87.933 779 45 20 2941 3708 31822617 31821877 0.000000e+00 872.0
24 TraesCS6B01G226000 chrUn 95.985 274 11 0 3908 4181 31821869 31821596 4.610000e-121 446.0
25 TraesCS6B01G226000 chrUn 95.985 274 11 0 3908 4181 325215899 325216172 4.610000e-121 446.0
26 TraesCS6B01G226000 chrUn 95.985 274 11 0 3908 4181 344948907 344948634 4.610000e-121 446.0
27 TraesCS6B01G226000 chrUn 83.462 260 14 12 3454 3708 325215656 325215891 1.410000e-51 215.0
28 TraesCS6B01G226000 chrUn 83.462 260 14 12 3454 3708 344949150 344948915 1.410000e-51 215.0
29 TraesCS6B01G226000 chr2D 87.179 780 45 18 2941 3708 557101663 557102399 0.000000e+00 835.0
30 TraesCS6B01G226000 chr2D 86.923 780 49 21 2941 3708 607129493 607128755 0.000000e+00 826.0
31 TraesCS6B01G226000 chr2D 90.541 518 34 9 2941 3452 633372536 633372028 0.000000e+00 671.0
32 TraesCS6B01G226000 chr2D 87.990 408 35 8 2997 3398 373409612 373409213 2.730000e-128 470.0
33 TraesCS6B01G226000 chr2D 97.080 274 8 0 3908 4181 557102407 557102680 4.580000e-126 462.0
34 TraesCS6B01G226000 chr2D 95.985 274 11 0 3908 4181 633371014 633370741 4.610000e-121 446.0
35 TraesCS6B01G226000 chr2D 92.271 207 13 3 3707 3912 154996331 154996127 2.280000e-74 291.0
36 TraesCS6B01G226000 chr2D 91.133 203 16 2 3710 3911 590070501 590070702 2.300000e-69 274.0
37 TraesCS6B01G226000 chr2D 83.462 260 14 12 3454 3708 633371257 633371022 1.410000e-51 215.0
38 TraesCS6B01G226000 chr2D 78.302 212 35 7 6184 6388 175969138 175968931 6.820000e-25 126.0
39 TraesCS6B01G226000 chr2D 78.109 201 27 10 6202 6388 206255316 206255119 1.910000e-20 111.0
40 TraesCS6B01G226000 chr2D 86.364 110 5 3 4903 5002 256675375 256675484 1.910000e-20 111.0
41 TraesCS6B01G226000 chr5D 86.854 677 47 11 3043 3708 448503022 448503667 0.000000e+00 719.0
42 TraesCS6B01G226000 chr5D 95.985 274 11 0 3908 4181 448503675 448503948 4.610000e-121 446.0
43 TraesCS6B01G226000 chr7A 87.745 408 34 8 2997 3398 610034994 610034597 4.580000e-126 462.0
44 TraesCS6B01G226000 chr7A 92.611 203 14 1 3712 3913 5651078 5650876 2.280000e-74 291.0
45 TraesCS6B01G226000 chr7A 89.796 98 4 1 4906 5003 590778463 590778372 3.170000e-23 121.0
46 TraesCS6B01G226000 chr7A 87.629 97 12 0 4906 5002 515002600 515002504 5.310000e-21 113.0
47 TraesCS6B01G226000 chr7A 75.882 170 37 4 6220 6388 92464934 92465100 4.160000e-12 84.2
48 TraesCS6B01G226000 chr7B 90.393 229 17 4 2780 3008 709771514 709771291 4.910000e-76 296.0
49 TraesCS6B01G226000 chr4D 92.233 206 15 1 3710 3914 258893655 258893450 2.280000e-74 291.0
50 TraesCS6B01G226000 chr4D 90.777 206 15 4 3712 3915 461423552 461423349 8.280000e-69 272.0
51 TraesCS6B01G226000 chr4D 88.660 97 7 2 4906 5002 38445546 38445638 1.480000e-21 115.0
52 TraesCS6B01G226000 chr3B 91.584 202 16 1 3711 3911 276788447 276788648 1.780000e-70 278.0
53 TraesCS6B01G226000 chr3A 92.391 184 13 1 2780 2963 722426957 722426775 1.790000e-65 261.0
54 TraesCS6B01G226000 chr5A 91.753 97 4 4 4906 5002 438354044 438353952 1.470000e-26 132.0
55 TraesCS6B01G226000 chr5A 85.965 114 13 3 6203 6314 586728574 586728686 1.140000e-22 119.0
56 TraesCS6B01G226000 chr2B 83.803 142 20 3 6181 6321 34438290 34438429 1.470000e-26 132.0
57 TraesCS6B01G226000 chr2A 86.916 107 4 3 4906 5002 252088289 252088183 1.910000e-20 111.0
58 TraesCS6B01G226000 chr4B 85.567 97 11 3 4906 5002 381291718 381291625 1.490000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G226000 chr6B 347747135 347753612 6477 False 11963.0 11963 100.000000 1 6478 1 chr6B.!!$F1 6477
1 TraesCS6B01G226000 chr6D 262512304 262518826 6522 True 2298.0 3314 91.574750 1 6478 4 chr6D.!!$R2 6477
2 TraesCS6B01G226000 chr6A 322056498 322062773 6275 False 1512.5 3275 91.880167 1 6478 6 chr6A.!!$F2 6477
3 TraesCS6B01G226000 chr3D 534052444 534053530 1086 True 798.5 1157 94.177000 2908 4181 2 chr3D.!!$R1 1273
4 TraesCS6B01G226000 chr1D 406702962 406703988 1026 False 670.0 889 92.270000 2941 4181 2 chr1D.!!$F1 1240
5 TraesCS6B01G226000 chrUn 31821596 31822617 1021 True 659.0 872 91.959000 2941 4181 2 chrUn.!!$R1 1240
6 TraesCS6B01G226000 chrUn 325215656 325216172 516 False 330.5 446 89.723500 3454 4181 2 chrUn.!!$F1 727
7 TraesCS6B01G226000 chrUn 344948634 344949150 516 True 330.5 446 89.723500 3454 4181 2 chrUn.!!$R2 727
8 TraesCS6B01G226000 chr2D 607128755 607129493 738 True 826.0 826 86.923000 2941 3708 1 chr2D.!!$R5 767
9 TraesCS6B01G226000 chr2D 557101663 557102680 1017 False 648.5 835 92.129500 2941 4181 2 chr2D.!!$F3 1240
10 TraesCS6B01G226000 chr2D 633370741 633372536 1795 True 444.0 671 89.996000 2941 4181 3 chr2D.!!$R6 1240
11 TraesCS6B01G226000 chr5D 448503022 448503948 926 False 582.5 719 91.419500 3043 4181 2 chr5D.!!$F1 1138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.032815 GAGGCGGAGATACCTTGCTC 59.967 60.000 0.00 0.00 36.05 4.26 F
362 374 1.227380 ACCTCATCGCGATCTTGGC 60.227 57.895 20.85 0.00 0.00 4.52 F
1042 1060 1.278413 GGGGGAAAGTACAGACTGGAC 59.722 57.143 10.07 10.07 35.52 4.02 F
1784 1802 1.255882 CCACTGCTATTTGTTGGCCA 58.744 50.000 0.00 0.00 0.00 5.36 F
2657 2693 1.463674 ATCGCATTCCAGAACAACCC 58.536 50.000 0.00 0.00 0.00 4.11 F
3892 4711 0.042731 AGCACCTCCCTAAGCACCTA 59.957 55.000 0.00 0.00 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1323 0.806868 ACTCCATCACAAGCAATGCG 59.193 50.000 0.00 0.0 0.00 4.73 R
1422 1440 1.901159 TGCCCATGCATAGCAAAAACT 59.099 42.857 18.46 0.0 44.23 2.66 R
2657 2693 1.867233 GTGACACTGGTGCTGTACTTG 59.133 52.381 0.00 0.0 0.00 3.16 R
3727 4546 1.878734 GCATCTCCCTAAGCATCTTGC 59.121 52.381 0.00 0.0 45.46 4.01 R
3921 4740 0.036732 GACCCAGTCAGATGCCACAA 59.963 55.000 0.00 0.0 32.09 3.33 R
5879 6922 1.112459 GAACAGTTTCAACTTGCGCG 58.888 50.000 0.00 0.0 37.08 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.364171 CGGAGGCGGAGATACCTTG 59.636 63.158 0.00 0.00 36.05 3.61
42 43 0.032815 GAGGCGGAGATACCTTGCTC 59.967 60.000 0.00 0.00 36.05 4.26
318 330 3.302344 CCCAAACCCCTGCAACCG 61.302 66.667 0.00 0.00 0.00 4.44
362 374 1.227380 ACCTCATCGCGATCTTGGC 60.227 57.895 20.85 0.00 0.00 4.52
445 457 4.181578 CACACTAACCTCCATAAGTTCGG 58.818 47.826 0.00 0.00 0.00 4.30
446 458 3.836562 ACACTAACCTCCATAAGTTCGGT 59.163 43.478 0.00 0.00 0.00 4.69
492 504 7.687941 ATTTGTCTGTCCTCGTTCATATTTT 57.312 32.000 0.00 0.00 0.00 1.82
514 527 7.994425 TTTAGTTAGATCATGCCAAGACAAA 57.006 32.000 0.00 0.00 0.00 2.83
558 571 1.496060 TAAGATGGGGTGCGAGTGAT 58.504 50.000 0.00 0.00 0.00 3.06
597 611 3.013219 GAGAACTCTGAAATTCCAGGGC 58.987 50.000 0.00 0.00 38.19 5.19
743 758 7.520614 GCCAAACATCAGCCTATAAGTGATAAC 60.521 40.741 0.00 0.00 29.64 1.89
745 760 8.554528 CAAACATCAGCCTATAAGTGATAACTG 58.445 37.037 0.00 0.00 29.64 3.16
823 840 4.080356 AGCTAGTATTGGGCATTTCACTCA 60.080 41.667 0.00 0.00 0.00 3.41
919 937 5.287035 GTGCATGTCGGAATTTTCATTCTTC 59.713 40.000 0.00 0.00 39.17 2.87
953 971 7.670009 ATCTATGCAGAATCATTAGCAGAAC 57.330 36.000 3.65 0.00 40.71 3.01
985 1003 6.715264 ACCCTGAGTTTTCATTTATTTCGTCT 59.285 34.615 0.00 0.00 31.68 4.18
1042 1060 1.278413 GGGGGAAAGTACAGACTGGAC 59.722 57.143 10.07 10.07 35.52 4.02
1211 1229 2.029728 CGGAATCGCTTGATCTTGTCAC 59.970 50.000 0.00 0.00 36.32 3.67
1305 1323 2.676471 ATGGGCCGCACAAAGGAC 60.676 61.111 0.00 0.00 35.57 3.85
1349 1367 2.103263 GTGAGAAGTCCTTGGTGAGTGT 59.897 50.000 0.00 0.00 0.00 3.55
1353 1371 3.392616 AGAAGTCCTTGGTGAGTGTGATT 59.607 43.478 0.00 0.00 0.00 2.57
1422 1440 2.831597 CAGAGACGTCTGCAATGCA 58.168 52.632 25.58 7.99 43.89 3.96
1458 1476 1.462731 GGCAGTCACCACCAATTGCA 61.463 55.000 0.00 0.00 33.42 4.08
1542 1560 8.757982 ATAGAAACAATCAGTGATAGGCATTT 57.242 30.769 5.94 3.27 0.00 2.32
1543 1561 7.472334 AGAAACAATCAGTGATAGGCATTTT 57.528 32.000 5.94 0.38 0.00 1.82
1544 1562 7.899973 AGAAACAATCAGTGATAGGCATTTTT 58.100 30.769 5.94 0.00 0.00 1.94
1545 1563 9.023962 AGAAACAATCAGTGATAGGCATTTTTA 57.976 29.630 5.94 0.00 0.00 1.52
1546 1564 9.807649 GAAACAATCAGTGATAGGCATTTTTAT 57.192 29.630 5.94 0.00 0.00 1.40
1547 1565 9.807649 AAACAATCAGTGATAGGCATTTTTATC 57.192 29.630 5.94 0.00 0.00 1.75
1548 1566 8.523915 ACAATCAGTGATAGGCATTTTTATCA 57.476 30.769 5.94 0.00 34.74 2.15
1549 1567 8.970020 ACAATCAGTGATAGGCATTTTTATCAA 58.030 29.630 5.94 0.00 37.86 2.57
1550 1568 9.459640 CAATCAGTGATAGGCATTTTTATCAAG 57.540 33.333 5.94 0.00 37.86 3.02
1551 1569 8.757982 ATCAGTGATAGGCATTTTTATCAAGT 57.242 30.769 3.05 0.00 37.86 3.16
1552 1570 9.851686 ATCAGTGATAGGCATTTTTATCAAGTA 57.148 29.630 3.05 0.00 37.86 2.24
1553 1571 9.851686 TCAGTGATAGGCATTTTTATCAAGTAT 57.148 29.630 0.00 0.00 37.86 2.12
1555 1573 9.851686 AGTGATAGGCATTTTTATCAAGTATCA 57.148 29.630 0.00 0.00 37.86 2.15
1556 1574 9.884465 GTGATAGGCATTTTTATCAAGTATCAC 57.116 33.333 0.00 0.00 37.86 3.06
1557 1575 9.625747 TGATAGGCATTTTTATCAAGTATCACA 57.374 29.630 0.00 0.00 34.33 3.58
1560 1578 8.353423 AGGCATTTTTATCAAGTATCACAAGT 57.647 30.769 0.00 0.00 0.00 3.16
1561 1579 8.462016 AGGCATTTTTATCAAGTATCACAAGTC 58.538 33.333 0.00 0.00 0.00 3.01
1562 1580 8.243426 GGCATTTTTATCAAGTATCACAAGTCA 58.757 33.333 0.00 0.00 0.00 3.41
1563 1581 9.282247 GCATTTTTATCAAGTATCACAAGTCAG 57.718 33.333 0.00 0.00 0.00 3.51
1570 1588 7.895975 TCAAGTATCACAAGTCAGATTTCTG 57.104 36.000 0.97 0.97 45.08 3.02
1571 1589 6.369890 TCAAGTATCACAAGTCAGATTTCTGC 59.630 38.462 2.60 0.00 43.46 4.26
1572 1590 5.798132 AGTATCACAAGTCAGATTTCTGCA 58.202 37.500 2.60 0.00 43.46 4.41
1573 1591 5.641209 AGTATCACAAGTCAGATTTCTGCAC 59.359 40.000 2.60 3.11 43.46 4.57
1574 1592 3.807553 TCACAAGTCAGATTTCTGCACA 58.192 40.909 2.60 0.00 43.46 4.57
1575 1593 3.811497 TCACAAGTCAGATTTCTGCACAG 59.189 43.478 2.60 0.00 43.46 3.66
1576 1594 3.562973 CACAAGTCAGATTTCTGCACAGT 59.437 43.478 2.60 3.68 43.46 3.55
1577 1595 3.562973 ACAAGTCAGATTTCTGCACAGTG 59.437 43.478 2.60 0.00 43.46 3.66
1578 1596 3.758755 AGTCAGATTTCTGCACAGTGA 57.241 42.857 4.15 0.00 43.46 3.41
1579 1597 4.077300 AGTCAGATTTCTGCACAGTGAA 57.923 40.909 4.15 0.00 43.46 3.18
1580 1598 4.649692 AGTCAGATTTCTGCACAGTGAAT 58.350 39.130 4.15 0.00 43.46 2.57
1581 1599 4.454847 AGTCAGATTTCTGCACAGTGAATG 59.545 41.667 4.15 0.00 43.46 2.67
1582 1600 4.453478 GTCAGATTTCTGCACAGTGAATGA 59.547 41.667 4.15 0.00 43.46 2.57
1583 1601 4.694037 TCAGATTTCTGCACAGTGAATGAG 59.306 41.667 4.15 0.00 43.46 2.90
1584 1602 4.454847 CAGATTTCTGCACAGTGAATGAGT 59.545 41.667 4.15 0.00 37.15 3.41
1585 1603 4.694509 AGATTTCTGCACAGTGAATGAGTC 59.305 41.667 4.15 2.03 0.00 3.36
1586 1604 3.473923 TTCTGCACAGTGAATGAGTCA 57.526 42.857 4.15 0.00 0.00 3.41
1587 1605 3.690475 TCTGCACAGTGAATGAGTCAT 57.310 42.857 4.15 0.00 38.90 3.06
1588 1606 4.011966 TCTGCACAGTGAATGAGTCATT 57.988 40.909 18.31 18.31 38.90 2.57
1589 1607 4.392047 TCTGCACAGTGAATGAGTCATTT 58.608 39.130 19.19 1.23 38.90 2.32
1590 1608 5.550290 TCTGCACAGTGAATGAGTCATTTA 58.450 37.500 19.19 12.78 38.90 1.40
1591 1609 5.409520 TCTGCACAGTGAATGAGTCATTTAC 59.590 40.000 25.63 25.63 39.55 2.01
1592 1610 5.062528 TGCACAGTGAATGAGTCATTTACA 58.937 37.500 31.07 19.01 40.99 2.41
1593 1611 5.179929 TGCACAGTGAATGAGTCATTTACAG 59.820 40.000 31.07 27.15 40.99 2.74
1594 1612 5.409520 GCACAGTGAATGAGTCATTTACAGA 59.590 40.000 31.07 9.78 40.99 3.41
1595 1613 6.093219 GCACAGTGAATGAGTCATTTACAGAT 59.907 38.462 31.07 18.66 40.99 2.90
1596 1614 7.278646 GCACAGTGAATGAGTCATTTACAGATA 59.721 37.037 31.07 8.83 40.99 1.98
1597 1615 9.322773 CACAGTGAATGAGTCATTTACAGATAT 57.677 33.333 31.07 15.25 40.99 1.63
1598 1616 9.896645 ACAGTGAATGAGTCATTTACAGATATT 57.103 29.630 31.07 14.69 40.99 1.28
1608 1626 9.857656 AGTCATTTACAGATATTGAATCCATGT 57.142 29.630 0.00 0.00 0.00 3.21
1617 1635 9.918630 CAGATATTGAATCCATGTTTTATTCCC 57.081 33.333 0.00 0.00 0.00 3.97
1618 1636 9.659135 AGATATTGAATCCATGTTTTATTCCCA 57.341 29.630 0.00 0.00 0.00 4.37
1780 1798 1.888512 ACTGCCCACTGCTATTTGTTG 59.111 47.619 0.00 0.00 42.00 3.33
1784 1802 1.255882 CCACTGCTATTTGTTGGCCA 58.744 50.000 0.00 0.00 0.00 5.36
1785 1803 1.826720 CCACTGCTATTTGTTGGCCAT 59.173 47.619 6.09 0.00 0.00 4.40
1828 1846 3.898741 TGCAGTACGGAATCCATATACCA 59.101 43.478 0.00 0.00 0.00 3.25
1898 1916 6.349280 GCAACTCTTACCTGCATGAATGTTTA 60.349 38.462 0.00 0.00 36.09 2.01
1946 1965 5.738693 GCTTTGAAGTTTTGCAAACCATTTC 59.261 36.000 12.39 11.23 31.37 2.17
1947 1966 6.403527 GCTTTGAAGTTTTGCAAACCATTTCT 60.404 34.615 12.39 1.35 31.37 2.52
1948 1967 7.446001 TTTGAAGTTTTGCAAACCATTTCTT 57.554 28.000 12.39 9.44 0.00 2.52
2154 2173 4.524318 AAGCATACGACCCCGGCG 62.524 66.667 0.00 0.00 40.78 6.46
2310 2329 9.927668 ATTAGTGAAAAAGTTGATATTTGGGTG 57.072 29.630 0.00 0.00 0.00 4.61
2438 2462 3.494048 GCCCCATCTTGAGTGATGTCTAG 60.494 52.174 0.00 0.00 41.47 2.43
2451 2475 7.069208 TGAGTGATGTCTAGCAGAATGATTAGT 59.931 37.037 0.00 0.00 39.69 2.24
2502 2538 4.757657 TGTAAAGTAACCACATGTTCGCAT 59.242 37.500 0.00 0.00 38.42 4.73
2597 2633 5.368145 AGAATATGCTACTTCAAATCCGCA 58.632 37.500 0.00 0.00 0.00 5.69
2657 2693 1.463674 ATCGCATTCCAGAACAACCC 58.536 50.000 0.00 0.00 0.00 4.11
2792 2828 3.801050 GTCATAGACTGCTGCATGTAGTG 59.199 47.826 12.66 8.29 41.66 2.74
2831 2867 5.410439 AGCATGGTTTTCATTTTTCTGATGC 59.590 36.000 0.00 0.00 32.92 3.91
3082 3119 6.600032 TCTTTTGTTGGTAGAAAACTGTAGCA 59.400 34.615 0.00 0.00 0.00 3.49
3104 3141 4.210955 CAGTGCTTCACTTCTTCTCTGAAC 59.789 45.833 0.00 0.00 42.59 3.18
3212 3249 9.520515 AGTCATCAGTGTTATTATTTGGAAACT 57.479 29.630 0.00 0.00 0.00 2.66
3718 4537 9.646522 AATATTTGTATTGATTGTCTTAGGCCT 57.353 29.630 11.78 11.78 0.00 5.19
3719 4538 7.961326 ATTTGTATTGATTGTCTTAGGCCTT 57.039 32.000 12.58 0.00 0.00 4.35
3720 4539 6.757897 TTGTATTGATTGTCTTAGGCCTTG 57.242 37.500 12.58 4.55 0.00 3.61
3721 4540 5.815581 TGTATTGATTGTCTTAGGCCTTGT 58.184 37.500 12.58 0.00 0.00 3.16
3722 4541 6.953101 TGTATTGATTGTCTTAGGCCTTGTA 58.047 36.000 12.58 0.00 0.00 2.41
3723 4542 6.821665 TGTATTGATTGTCTTAGGCCTTGTAC 59.178 38.462 12.58 7.39 0.00 2.90
3724 4543 4.901197 TGATTGTCTTAGGCCTTGTACA 57.099 40.909 12.58 10.31 0.00 2.90
3725 4544 5.235850 TGATTGTCTTAGGCCTTGTACAA 57.764 39.130 21.61 21.61 0.00 2.41
3726 4545 5.815581 TGATTGTCTTAGGCCTTGTACAAT 58.184 37.500 26.63 26.63 39.53 2.71
3727 4546 5.647658 TGATTGTCTTAGGCCTTGTACAATG 59.352 40.000 29.31 7.68 37.60 2.82
3728 4547 3.343617 TGTCTTAGGCCTTGTACAATGC 58.656 45.455 23.06 23.06 0.00 3.56
3729 4548 3.244735 TGTCTTAGGCCTTGTACAATGCA 60.245 43.478 29.20 13.23 34.30 3.96
3730 4549 3.756434 GTCTTAGGCCTTGTACAATGCAA 59.244 43.478 29.20 18.40 34.30 4.08
3731 4550 4.009675 TCTTAGGCCTTGTACAATGCAAG 58.990 43.478 29.20 24.44 42.00 4.01
3732 4551 2.584835 AGGCCTTGTACAATGCAAGA 57.415 45.000 29.20 0.00 44.29 3.02
3733 4552 3.091633 AGGCCTTGTACAATGCAAGAT 57.908 42.857 29.20 14.27 44.29 2.40
3734 4553 2.756760 AGGCCTTGTACAATGCAAGATG 59.243 45.455 29.20 8.77 44.29 2.90
3735 4554 2.533266 GCCTTGTACAATGCAAGATGC 58.467 47.619 25.28 8.66 44.29 3.91
3736 4555 2.165030 GCCTTGTACAATGCAAGATGCT 59.835 45.455 25.28 0.00 45.31 3.79
3737 4556 3.367703 GCCTTGTACAATGCAAGATGCTT 60.368 43.478 25.28 0.00 45.31 3.91
3738 4557 4.142403 GCCTTGTACAATGCAAGATGCTTA 60.142 41.667 25.28 0.00 45.31 3.09
3739 4558 5.575957 CCTTGTACAATGCAAGATGCTTAG 58.424 41.667 9.13 0.00 45.31 2.18
3740 4559 5.449588 CCTTGTACAATGCAAGATGCTTAGG 60.450 44.000 9.13 0.00 45.31 2.69
3741 4560 3.947196 TGTACAATGCAAGATGCTTAGGG 59.053 43.478 3.78 0.00 45.31 3.53
3742 4561 3.370840 ACAATGCAAGATGCTTAGGGA 57.629 42.857 3.78 0.00 45.31 4.20
3743 4562 3.285484 ACAATGCAAGATGCTTAGGGAG 58.715 45.455 3.78 0.00 45.31 4.30
3744 4563 3.054139 ACAATGCAAGATGCTTAGGGAGA 60.054 43.478 3.78 0.00 45.31 3.71
3745 4564 4.142790 CAATGCAAGATGCTTAGGGAGAT 58.857 43.478 3.78 0.00 45.31 2.75
3746 4565 3.204306 TGCAAGATGCTTAGGGAGATG 57.796 47.619 3.78 0.00 45.31 2.90
3747 4566 1.878734 GCAAGATGCTTAGGGAGATGC 59.121 52.381 0.00 0.00 40.96 3.91
3748 4567 2.486907 GCAAGATGCTTAGGGAGATGCT 60.487 50.000 0.00 0.00 40.96 3.79
3749 4568 3.818180 CAAGATGCTTAGGGAGATGCTT 58.182 45.455 0.00 0.00 0.00 3.91
3750 4569 4.744867 GCAAGATGCTTAGGGAGATGCTTA 60.745 45.833 0.00 0.00 40.96 3.09
3751 4570 4.888326 AGATGCTTAGGGAGATGCTTAG 57.112 45.455 0.00 0.00 0.00 2.18
3752 4571 4.487804 AGATGCTTAGGGAGATGCTTAGA 58.512 43.478 0.00 0.00 0.00 2.10
3753 4572 4.527816 AGATGCTTAGGGAGATGCTTAGAG 59.472 45.833 0.00 0.00 0.00 2.43
3754 4573 3.916035 TGCTTAGGGAGATGCTTAGAGA 58.084 45.455 0.00 0.00 0.00 3.10
3755 4574 4.290093 TGCTTAGGGAGATGCTTAGAGAA 58.710 43.478 0.00 0.00 0.00 2.87
3756 4575 4.716784 TGCTTAGGGAGATGCTTAGAGAAA 59.283 41.667 0.00 0.00 0.00 2.52
3757 4576 5.367937 TGCTTAGGGAGATGCTTAGAGAAAT 59.632 40.000 0.00 0.00 0.00 2.17
3758 4577 6.554982 TGCTTAGGGAGATGCTTAGAGAAATA 59.445 38.462 0.00 0.00 0.00 1.40
3759 4578 7.071196 TGCTTAGGGAGATGCTTAGAGAAATAA 59.929 37.037 0.00 0.00 0.00 1.40
3760 4579 7.934120 GCTTAGGGAGATGCTTAGAGAAATAAA 59.066 37.037 0.00 0.00 0.00 1.40
3761 4580 9.267084 CTTAGGGAGATGCTTAGAGAAATAAAC 57.733 37.037 0.00 0.00 0.00 2.01
3762 4581 6.596621 AGGGAGATGCTTAGAGAAATAAACC 58.403 40.000 0.00 0.00 0.00 3.27
3763 4582 6.158695 AGGGAGATGCTTAGAGAAATAAACCA 59.841 38.462 0.00 0.00 0.00 3.67
3764 4583 6.484977 GGGAGATGCTTAGAGAAATAAACCAG 59.515 42.308 0.00 0.00 0.00 4.00
3765 4584 7.051000 GGAGATGCTTAGAGAAATAAACCAGT 58.949 38.462 0.00 0.00 0.00 4.00
3766 4585 7.225734 GGAGATGCTTAGAGAAATAAACCAGTC 59.774 40.741 0.00 0.00 0.00 3.51
3767 4586 7.856415 AGATGCTTAGAGAAATAAACCAGTCT 58.144 34.615 0.00 0.00 0.00 3.24
3768 4587 8.325046 AGATGCTTAGAGAAATAAACCAGTCTT 58.675 33.333 0.00 0.00 0.00 3.01
3769 4588 8.870075 ATGCTTAGAGAAATAAACCAGTCTTT 57.130 30.769 0.00 0.00 0.00 2.52
3770 4589 8.324163 TGCTTAGAGAAATAAACCAGTCTTTC 57.676 34.615 0.00 0.00 0.00 2.62
3771 4590 8.157476 TGCTTAGAGAAATAAACCAGTCTTTCT 58.843 33.333 0.00 0.00 39.86 2.52
3772 4591 9.004717 GCTTAGAGAAATAAACCAGTCTTTCTT 57.995 33.333 0.00 0.00 37.90 2.52
3777 4596 9.613957 GAGAAATAAACCAGTCTTTCTTTAAGC 57.386 33.333 0.00 0.00 37.90 3.09
3778 4597 9.131791 AGAAATAAACCAGTCTTTCTTTAAGCA 57.868 29.630 0.00 0.00 35.06 3.91
3779 4598 9.181805 GAAATAAACCAGTCTTTCTTTAAGCAC 57.818 33.333 0.00 0.00 33.66 4.40
3780 4599 5.515797 AAACCAGTCTTTCTTTAAGCACC 57.484 39.130 0.00 0.00 33.66 5.01
3781 4600 3.139077 ACCAGTCTTTCTTTAAGCACCG 58.861 45.455 0.00 0.00 33.66 4.94
3782 4601 2.484264 CCAGTCTTTCTTTAAGCACCGG 59.516 50.000 0.00 0.00 33.66 5.28
3783 4602 3.139077 CAGTCTTTCTTTAAGCACCGGT 58.861 45.455 0.00 0.00 33.66 5.28
3784 4603 3.058914 CAGTCTTTCTTTAAGCACCGGTG 60.059 47.826 30.66 30.66 33.66 4.94
3798 4617 2.936498 CACCGGTGCTTATTTGTAGAGG 59.064 50.000 24.02 0.00 0.00 3.69
3799 4618 2.093128 ACCGGTGCTTATTTGTAGAGGG 60.093 50.000 6.12 0.00 0.00 4.30
3800 4619 2.093128 CCGGTGCTTATTTGTAGAGGGT 60.093 50.000 0.00 0.00 0.00 4.34
3801 4620 3.133362 CCGGTGCTTATTTGTAGAGGGTA 59.867 47.826 0.00 0.00 0.00 3.69
3802 4621 4.369182 CGGTGCTTATTTGTAGAGGGTAG 58.631 47.826 0.00 0.00 0.00 3.18
3803 4622 4.098960 CGGTGCTTATTTGTAGAGGGTAGA 59.901 45.833 0.00 0.00 0.00 2.59
3804 4623 5.358090 GGTGCTTATTTGTAGAGGGTAGAC 58.642 45.833 0.00 0.00 0.00 2.59
3805 4624 5.105064 GGTGCTTATTTGTAGAGGGTAGACA 60.105 44.000 0.00 0.00 0.00 3.41
3806 4625 5.811100 GTGCTTATTTGTAGAGGGTAGACAC 59.189 44.000 0.00 0.00 0.00 3.67
3807 4626 5.720041 TGCTTATTTGTAGAGGGTAGACACT 59.280 40.000 0.00 0.00 0.00 3.55
3808 4627 6.212791 TGCTTATTTGTAGAGGGTAGACACTT 59.787 38.462 0.00 0.00 0.00 3.16
3809 4628 7.398047 TGCTTATTTGTAGAGGGTAGACACTTA 59.602 37.037 0.00 0.00 0.00 2.24
3810 4629 8.255905 GCTTATTTGTAGAGGGTAGACACTTAA 58.744 37.037 0.00 0.00 0.00 1.85
3815 4634 7.893124 TGTAGAGGGTAGACACTTAATTAGG 57.107 40.000 0.00 0.00 0.00 2.69
3816 4635 5.873146 AGAGGGTAGACACTTAATTAGGC 57.127 43.478 0.00 0.00 0.00 3.93
3817 4636 4.341520 AGAGGGTAGACACTTAATTAGGCG 59.658 45.833 0.00 0.00 0.00 5.52
3818 4637 4.028825 AGGGTAGACACTTAATTAGGCGT 58.971 43.478 0.00 0.00 0.00 5.68
3819 4638 4.099113 AGGGTAGACACTTAATTAGGCGTC 59.901 45.833 7.47 7.47 33.10 5.19
3820 4639 4.099113 GGGTAGACACTTAATTAGGCGTCT 59.901 45.833 18.65 18.65 41.18 4.18
3821 4640 5.041940 GGTAGACACTTAATTAGGCGTCTG 58.958 45.833 21.90 5.29 39.60 3.51
3822 4641 4.803098 AGACACTTAATTAGGCGTCTGT 57.197 40.909 15.20 3.44 38.55 3.41
3823 4642 4.745649 AGACACTTAATTAGGCGTCTGTC 58.254 43.478 15.20 11.16 38.55 3.51
3824 4643 3.858247 ACACTTAATTAGGCGTCTGTCC 58.142 45.455 0.00 0.00 0.00 4.02
3825 4644 3.259876 ACACTTAATTAGGCGTCTGTCCA 59.740 43.478 0.00 0.00 0.00 4.02
3826 4645 3.865745 CACTTAATTAGGCGTCTGTCCAG 59.134 47.826 0.00 0.00 0.00 3.86
3827 4646 3.514309 ACTTAATTAGGCGTCTGTCCAGT 59.486 43.478 0.00 0.00 0.00 4.00
3828 4647 4.708421 ACTTAATTAGGCGTCTGTCCAGTA 59.292 41.667 0.00 0.00 0.00 2.74
3829 4648 3.802948 AATTAGGCGTCTGTCCAGTAG 57.197 47.619 0.00 0.00 0.00 2.57
3830 4649 2.502142 TTAGGCGTCTGTCCAGTAGA 57.498 50.000 0.00 0.00 0.00 2.59
3831 4650 2.502142 TAGGCGTCTGTCCAGTAGAA 57.498 50.000 0.00 0.00 0.00 2.10
3832 4651 1.629043 AGGCGTCTGTCCAGTAGAAA 58.371 50.000 0.00 0.00 0.00 2.52
3833 4652 2.180276 AGGCGTCTGTCCAGTAGAAAT 58.820 47.619 0.00 0.00 0.00 2.17
3834 4653 3.362706 AGGCGTCTGTCCAGTAGAAATA 58.637 45.455 0.00 0.00 0.00 1.40
3835 4654 3.381908 AGGCGTCTGTCCAGTAGAAATAG 59.618 47.826 0.00 0.00 0.00 1.73
3836 4655 3.491104 GGCGTCTGTCCAGTAGAAATAGG 60.491 52.174 0.00 0.00 0.00 2.57
3837 4656 3.707793 CGTCTGTCCAGTAGAAATAGGC 58.292 50.000 0.00 0.00 0.00 3.93
3838 4657 3.130516 CGTCTGTCCAGTAGAAATAGGCA 59.869 47.826 0.00 0.00 0.00 4.75
3839 4658 4.434520 GTCTGTCCAGTAGAAATAGGCAC 58.565 47.826 0.00 0.00 0.00 5.01
3840 4659 4.160626 GTCTGTCCAGTAGAAATAGGCACT 59.839 45.833 0.00 0.00 46.37 4.40
3841 4660 4.160439 TCTGTCCAGTAGAAATAGGCACTG 59.840 45.833 0.00 0.00 41.52 3.66
3858 4677 4.843220 CACTGGTGCTTCAGAAAAATCT 57.157 40.909 12.54 0.00 38.11 2.40
3859 4678 4.543692 CACTGGTGCTTCAGAAAAATCTG 58.456 43.478 12.54 0.00 38.11 2.90
3860 4679 3.571401 ACTGGTGCTTCAGAAAAATCTGG 59.429 43.478 12.54 0.00 38.23 3.86
3861 4680 3.565307 TGGTGCTTCAGAAAAATCTGGT 58.435 40.909 6.04 0.00 38.23 4.00
3862 4681 3.960102 TGGTGCTTCAGAAAAATCTGGTT 59.040 39.130 6.04 0.00 38.23 3.67
3863 4682 4.405358 TGGTGCTTCAGAAAAATCTGGTTT 59.595 37.500 6.04 0.00 38.23 3.27
3864 4683 5.596361 TGGTGCTTCAGAAAAATCTGGTTTA 59.404 36.000 6.04 0.00 38.23 2.01
3865 4684 6.267471 TGGTGCTTCAGAAAAATCTGGTTTAT 59.733 34.615 6.04 0.00 38.23 1.40
3866 4685 7.154656 GGTGCTTCAGAAAAATCTGGTTTATT 58.845 34.615 6.04 0.00 38.23 1.40
3867 4686 7.657354 GGTGCTTCAGAAAAATCTGGTTTATTT 59.343 33.333 6.04 0.00 38.23 1.40
3868 4687 9.045223 GTGCTTCAGAAAAATCTGGTTTATTTT 57.955 29.630 6.04 0.00 37.98 1.82
3869 4688 9.612066 TGCTTCAGAAAAATCTGGTTTATTTTT 57.388 25.926 6.04 6.30 44.88 1.94
3878 4697 9.489084 AAAATCTGGTTTATTTTTCTAAGCACC 57.511 29.630 0.00 0.00 33.78 5.01
3879 4698 8.422577 AATCTGGTTTATTTTTCTAAGCACCT 57.577 30.769 0.00 0.00 0.00 4.00
3880 4699 7.448748 TCTGGTTTATTTTTCTAAGCACCTC 57.551 36.000 0.00 0.00 0.00 3.85
3881 4700 6.433093 TCTGGTTTATTTTTCTAAGCACCTCC 59.567 38.462 0.00 0.00 0.00 4.30
3882 4701 5.479027 TGGTTTATTTTTCTAAGCACCTCCC 59.521 40.000 0.00 0.00 0.00 4.30
3883 4702 5.715279 GGTTTATTTTTCTAAGCACCTCCCT 59.285 40.000 0.00 0.00 0.00 4.20
3884 4703 6.888088 GGTTTATTTTTCTAAGCACCTCCCTA 59.112 38.462 0.00 0.00 0.00 3.53
3885 4704 7.395206 GGTTTATTTTTCTAAGCACCTCCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
3886 4705 8.459635 GTTTATTTTTCTAAGCACCTCCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
3887 4706 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
3888 4707 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
3889 4708 1.831736 TCTAAGCACCTCCCTAAGCAC 59.168 52.381 0.00 0.00 0.00 4.40
3890 4709 0.909623 TAAGCACCTCCCTAAGCACC 59.090 55.000 0.00 0.00 0.00 5.01
3891 4710 0.842467 AAGCACCTCCCTAAGCACCT 60.842 55.000 0.00 0.00 0.00 4.00
3892 4711 0.042731 AGCACCTCCCTAAGCACCTA 59.957 55.000 0.00 0.00 0.00 3.08
3893 4712 0.466124 GCACCTCCCTAAGCACCTAG 59.534 60.000 0.00 0.00 0.00 3.02
3894 4713 0.466124 CACCTCCCTAAGCACCTAGC 59.534 60.000 0.00 0.00 46.19 3.42
3921 4740 4.576330 ACAAGGCCTTATGAGCTACTTT 57.424 40.909 20.00 0.00 0.00 2.66
4125 5124 7.668052 TGGTTGCTGTCTAACTTTATTACCATT 59.332 33.333 0.00 0.00 0.00 3.16
4255 5254 2.202987 GCCGGAGATGCACCTCTG 60.203 66.667 10.30 10.30 38.86 3.35
4299 5298 1.064758 TGCACAGGGTTCTCAAGTTGT 60.065 47.619 2.11 0.00 0.00 3.32
4425 5424 1.340405 GCATGGTCATTCTGGTCAGGT 60.340 52.381 0.00 0.00 0.00 4.00
4439 5438 3.252215 TGGTCAGGTTTTGCGAAATACAG 59.748 43.478 1.61 0.00 0.00 2.74
4557 5556 4.260948 GCCACAAAGCAAGACTATATCTGC 60.261 45.833 0.00 0.00 37.88 4.26
4561 5560 5.874810 ACAAAGCAAGACTATATCTGCGAAA 59.125 36.000 0.00 0.00 37.88 3.46
4632 5631 2.952978 CAGGGACTACTGCTACTGGTAG 59.047 54.545 3.62 3.62 40.62 3.18
4635 5634 3.436761 GGGACTACTGCTACTGGTAGGAT 60.437 52.174 9.43 1.33 39.53 3.24
4925 5924 2.191981 ACTCCCTCCGTCCCATAATT 57.808 50.000 0.00 0.00 0.00 1.40
5006 6031 1.149288 TGGGACAGAGGGAGTACAACT 59.851 52.381 0.00 0.00 0.00 3.16
5017 6042 5.308825 AGGGAGTACAACTCATTTGTCTTG 58.691 41.667 9.15 0.00 46.05 3.02
5096 6121 1.345415 GAAGGAACGGTGTGGGAACTA 59.655 52.381 0.00 0.00 0.00 2.24
5144 6169 1.990060 GGTACCCAGCTCTGAGGCA 60.990 63.158 6.83 0.00 34.17 4.75
5294 6319 0.105593 CATCATCGGGTAGCACTGCT 59.894 55.000 8.95 8.95 43.41 4.24
5318 6343 3.313249 CAGCAACACAGATGAACAGAACA 59.687 43.478 0.00 0.00 0.00 3.18
5325 6350 3.890756 ACAGATGAACAGAACAAATGCCA 59.109 39.130 0.00 0.00 0.00 4.92
5329 6354 3.030291 TGAACAGAACAAATGCCAAGGT 58.970 40.909 0.00 0.00 0.00 3.50
5552 6578 4.373116 TTGAGCCGACCTGGACGC 62.373 66.667 13.02 8.65 42.00 5.19
5580 6606 0.042188 CTGCGGTCGTTTGTCAAGTG 60.042 55.000 0.00 0.00 0.00 3.16
5597 6623 9.606631 TTGTCAAGTGCCTTGTTAATAAATTTT 57.393 25.926 12.71 0.00 41.66 1.82
5701 6727 4.406003 AGGACCGTATGCTGATTTACTCTT 59.594 41.667 0.00 0.00 0.00 2.85
5703 6729 5.234543 GGACCGTATGCTGATTTACTCTTTC 59.765 44.000 0.00 0.00 0.00 2.62
5704 6730 5.116882 ACCGTATGCTGATTTACTCTTTCC 58.883 41.667 0.00 0.00 0.00 3.13
5719 6748 4.835615 ACTCTTTCCTGAGCTTACTCTCAA 59.164 41.667 0.00 0.00 43.85 3.02
5787 6823 1.035139 CAACTTTGGTGCTCAAGGCT 58.965 50.000 3.28 0.00 42.39 4.58
5788 6824 1.410153 CAACTTTGGTGCTCAAGGCTT 59.590 47.619 0.00 0.00 42.39 4.35
5879 6922 1.278637 CGCGTGGAACAGTTTGGTC 59.721 57.895 0.00 0.00 41.80 4.02
5881 6924 1.278637 CGTGGAACAGTTTGGTCGC 59.721 57.895 0.00 0.00 41.80 5.19
5920 6963 7.985184 TGTTCAAACTCATAGTAACTTGACAGT 59.015 33.333 0.00 0.00 26.31 3.55
5952 6995 0.263172 TGGTCCAAACAACCCCACAT 59.737 50.000 0.00 0.00 35.84 3.21
5965 7010 0.607620 CCCACATGGCGATTGGTTTT 59.392 50.000 0.00 0.00 0.00 2.43
6020 7066 8.793592 ACAAGAAACACTCTTTTAAGTTCAAGT 58.206 29.630 0.00 0.00 41.97 3.16
6082 7137 2.187958 CTAGGGAAGTCATCACACCCA 58.812 52.381 0.00 0.00 41.28 4.51
6083 7138 0.987294 AGGGAAGTCATCACACCCAG 59.013 55.000 0.00 0.00 41.28 4.45
6084 7139 0.693049 GGGAAGTCATCACACCCAGT 59.307 55.000 0.00 0.00 39.67 4.00
6085 7140 1.906574 GGGAAGTCATCACACCCAGTA 59.093 52.381 0.00 0.00 39.67 2.74
6086 7141 2.505819 GGGAAGTCATCACACCCAGTAT 59.494 50.000 0.00 0.00 39.67 2.12
6088 7143 4.163458 GGGAAGTCATCACACCCAGTATAA 59.837 45.833 0.00 0.00 39.67 0.98
6089 7144 5.360591 GGAAGTCATCACACCCAGTATAAG 58.639 45.833 0.00 0.00 0.00 1.73
6090 7145 5.128827 GGAAGTCATCACACCCAGTATAAGA 59.871 44.000 0.00 0.00 0.00 2.10
6091 7146 5.860941 AGTCATCACACCCAGTATAAGAG 57.139 43.478 0.00 0.00 0.00 2.85
6092 7147 4.100189 AGTCATCACACCCAGTATAAGAGC 59.900 45.833 0.00 0.00 0.00 4.09
6093 7148 4.030216 TCATCACACCCAGTATAAGAGCA 58.970 43.478 0.00 0.00 0.00 4.26
6094 7149 4.655649 TCATCACACCCAGTATAAGAGCAT 59.344 41.667 0.00 0.00 0.00 3.79
6135 7371 7.326063 GCATCTACAACCACAAGTAACAAATTC 59.674 37.037 0.00 0.00 0.00 2.17
6136 7372 8.567948 CATCTACAACCACAAGTAACAAATTCT 58.432 33.333 0.00 0.00 0.00 2.40
6159 7395 2.278596 CGTCCGCGGGTAGTGATG 60.279 66.667 27.83 6.15 0.00 3.07
6160 7396 2.585247 GTCCGCGGGTAGTGATGC 60.585 66.667 27.83 0.72 0.00 3.91
6161 7397 3.071837 TCCGCGGGTAGTGATGCA 61.072 61.111 27.83 0.00 0.00 3.96
6162 7398 2.890474 CCGCGGGTAGTGATGCAC 60.890 66.667 20.10 0.00 34.10 4.57
6163 7399 2.125713 CGCGGGTAGTGATGCACA 60.126 61.111 0.00 0.00 36.74 4.57
6165 7401 1.794222 GCGGGTAGTGATGCACAAC 59.206 57.895 0.00 0.00 36.74 3.32
6166 7402 0.953471 GCGGGTAGTGATGCACAACA 60.953 55.000 0.00 0.00 36.74 3.33
6173 7477 1.405105 AGTGATGCACAACACACAACC 59.595 47.619 18.17 0.00 39.18 3.77
6195 7531 4.502016 CGGATACATCTAGCTCATGCAAT 58.498 43.478 0.00 0.00 42.74 3.56
6219 7555 4.178545 AGCGTACGTACCTAAACACATT 57.821 40.909 19.67 0.00 0.00 2.71
6264 7600 7.404671 TGACATGCTCTACTAACTATGAACA 57.595 36.000 0.00 0.00 0.00 3.18
6268 7604 9.672673 ACATGCTCTACTAACTATGAACAAAAT 57.327 29.630 0.00 0.00 0.00 1.82
6295 7634 1.673033 CGAAGAAGTTCATCCACGGCT 60.673 52.381 5.50 0.00 32.36 5.52
6324 7663 2.597217 TGCCTTTGCACTTCCCGG 60.597 61.111 0.00 0.00 44.23 5.73
6331 7681 1.764571 TTGCACTTCCCGGCAGTAGT 61.765 55.000 0.00 0.00 41.68 2.73
6360 7710 2.798689 CAGAACGGATCGAGGCGA 59.201 61.111 0.00 0.00 41.13 5.54
6361 7711 1.586564 CAGAACGGATCGAGGCGAC 60.587 63.158 0.00 0.00 39.18 5.19
6372 7722 4.745116 AGGCGACTCTGCTCACTA 57.255 55.556 0.00 0.00 32.90 2.74
6394 7744 1.523758 GGAGCTGTCCGATTTGTTGT 58.476 50.000 0.00 0.00 31.37 3.32
6395 7745 1.464997 GGAGCTGTCCGATTTGTTGTC 59.535 52.381 0.00 0.00 31.37 3.18
6396 7746 1.464997 GAGCTGTCCGATTTGTTGTCC 59.535 52.381 0.00 0.00 0.00 4.02
6404 7754 1.730064 CGATTTGTTGTCCGATCCGTT 59.270 47.619 0.00 0.00 0.00 4.44
6419 7769 2.087009 CGTTGCCGTCCTCGTCTTC 61.087 63.158 0.00 0.00 35.01 2.87
6430 7780 1.479709 CTCGTCTTCCTCCTCCATGT 58.520 55.000 0.00 0.00 0.00 3.21
6434 7784 0.119155 TCTTCCTCCTCCATGTGGGT 59.881 55.000 0.00 0.00 38.11 4.51
6435 7785 0.254178 CTTCCTCCTCCATGTGGGTG 59.746 60.000 0.00 0.00 38.11 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.819595 CCACAATCTCGTGCGGGG 60.820 66.667 0.00 0.00 35.47 5.73
135 141 4.502962 GAGAGGAGAAGTTGGTCAGATTG 58.497 47.826 0.00 0.00 0.00 2.67
362 374 1.165270 CCTACCTCAAAAGCCAACGG 58.835 55.000 0.00 0.00 0.00 4.44
445 457 1.605712 GGCCGGATCTACATGCTGTAC 60.606 57.143 5.05 0.00 0.00 2.90
446 458 0.679505 GGCCGGATCTACATGCTGTA 59.320 55.000 5.05 0.00 0.00 2.74
492 504 5.580691 CGTTTGTCTTGGCATGATCTAACTA 59.419 40.000 6.35 0.00 0.00 2.24
514 527 5.533528 ACTGCAAAGGTCTTAAAATAACCGT 59.466 36.000 0.00 0.00 38.14 4.83
558 571 8.871125 AGAGTTCTCCATCAGTTAGAAGTTAAA 58.129 33.333 0.00 0.00 33.98 1.52
597 611 3.584848 CCTATCCCTGGGTTCATAAGAGG 59.415 52.174 13.56 4.32 0.00 3.69
743 758 6.150976 TGCATTAAGTGGTGAAAATCCTACAG 59.849 38.462 0.00 0.00 0.00 2.74
745 760 6.374333 TCTGCATTAAGTGGTGAAAATCCTAC 59.626 38.462 0.00 0.00 0.00 3.18
823 840 4.777896 TGTCTAACAGTCTAAGAAGCCCAT 59.222 41.667 0.00 0.00 0.00 4.00
919 937 8.618702 ATGATTCTGCATAGATAAAAGAGGTG 57.381 34.615 0.00 0.00 31.81 4.00
985 1003 3.680490 TCCGCATTCTCACAATAACCAA 58.320 40.909 0.00 0.00 0.00 3.67
1042 1060 2.361610 AATGGTGCGGCCTTCCAG 60.362 61.111 14.04 0.00 38.35 3.86
1211 1229 2.034878 TCATCACCTGGATCTCCTTCG 58.965 52.381 0.00 0.00 32.57 3.79
1305 1323 0.806868 ACTCCATCACAAGCAATGCG 59.193 50.000 0.00 0.00 0.00 4.73
1349 1367 2.762887 CCAGTACCTCTGCTCTCAATCA 59.237 50.000 0.00 0.00 42.38 2.57
1353 1371 2.310779 AACCAGTACCTCTGCTCTCA 57.689 50.000 0.00 0.00 42.38 3.27
1422 1440 1.901159 TGCCCATGCATAGCAAAAACT 59.099 42.857 18.46 0.00 44.23 2.66
1458 1476 6.753913 ATGACTCATTCCATGTACCTATGT 57.246 37.500 0.00 0.00 0.00 2.29
1516 1534 9.851686 AAATGCCTATCACTGATTGTTTCTATA 57.148 29.630 0.00 0.00 0.00 1.31
1517 1535 8.757982 AAATGCCTATCACTGATTGTTTCTAT 57.242 30.769 0.00 0.00 0.00 1.98
1518 1536 8.579850 AAAATGCCTATCACTGATTGTTTCTA 57.420 30.769 0.00 0.00 0.00 2.10
1519 1537 7.472334 AAAATGCCTATCACTGATTGTTTCT 57.528 32.000 0.00 0.00 0.00 2.52
1520 1538 9.807649 ATAAAAATGCCTATCACTGATTGTTTC 57.192 29.630 0.00 0.00 0.00 2.78
1521 1539 9.807649 GATAAAAATGCCTATCACTGATTGTTT 57.192 29.630 0.00 0.00 0.00 2.83
1522 1540 8.970020 TGATAAAAATGCCTATCACTGATTGTT 58.030 29.630 0.00 0.00 31.17 2.83
1523 1541 8.523915 TGATAAAAATGCCTATCACTGATTGT 57.476 30.769 0.00 0.00 31.17 2.71
1524 1542 9.459640 CTTGATAAAAATGCCTATCACTGATTG 57.540 33.333 0.00 0.00 34.93 2.67
1525 1543 9.193806 ACTTGATAAAAATGCCTATCACTGATT 57.806 29.630 0.00 0.00 34.93 2.57
1526 1544 8.757982 ACTTGATAAAAATGCCTATCACTGAT 57.242 30.769 0.00 0.00 34.93 2.90
1527 1545 9.851686 ATACTTGATAAAAATGCCTATCACTGA 57.148 29.630 0.00 0.00 34.93 3.41
1529 1547 9.851686 TGATACTTGATAAAAATGCCTATCACT 57.148 29.630 0.00 0.00 34.93 3.41
1530 1548 9.884465 GTGATACTTGATAAAAATGCCTATCAC 57.116 33.333 0.00 0.00 34.93 3.06
1531 1549 9.625747 TGTGATACTTGATAAAAATGCCTATCA 57.374 29.630 0.00 0.00 33.68 2.15
1534 1552 9.461312 ACTTGTGATACTTGATAAAAATGCCTA 57.539 29.630 0.00 0.00 0.00 3.93
1535 1553 8.353423 ACTTGTGATACTTGATAAAAATGCCT 57.647 30.769 0.00 0.00 0.00 4.75
1536 1554 8.243426 TGACTTGTGATACTTGATAAAAATGCC 58.757 33.333 0.00 0.00 0.00 4.40
1537 1555 9.282247 CTGACTTGTGATACTTGATAAAAATGC 57.718 33.333 0.00 0.00 0.00 3.56
1544 1562 9.591792 CAGAAATCTGACTTGTGATACTTGATA 57.408 33.333 4.37 0.00 46.59 2.15
1545 1563 7.065563 GCAGAAATCTGACTTGTGATACTTGAT 59.934 37.037 14.43 0.00 46.59 2.57
1546 1564 6.369890 GCAGAAATCTGACTTGTGATACTTGA 59.630 38.462 14.43 0.00 46.59 3.02
1547 1565 6.148315 TGCAGAAATCTGACTTGTGATACTTG 59.852 38.462 14.43 0.00 46.59 3.16
1548 1566 6.148480 GTGCAGAAATCTGACTTGTGATACTT 59.852 38.462 14.43 0.00 46.59 2.24
1549 1567 5.641209 GTGCAGAAATCTGACTTGTGATACT 59.359 40.000 14.43 0.00 46.59 2.12
1550 1568 5.409520 TGTGCAGAAATCTGACTTGTGATAC 59.590 40.000 14.43 0.00 46.59 2.24
1551 1569 5.550290 TGTGCAGAAATCTGACTTGTGATA 58.450 37.500 14.43 0.00 46.59 2.15
1552 1570 4.392047 TGTGCAGAAATCTGACTTGTGAT 58.608 39.130 14.43 0.00 46.59 3.06
1553 1571 3.807553 TGTGCAGAAATCTGACTTGTGA 58.192 40.909 14.43 0.00 46.59 3.58
1554 1572 3.562973 ACTGTGCAGAAATCTGACTTGTG 59.437 43.478 14.43 0.00 46.59 3.33
1555 1573 3.562973 CACTGTGCAGAAATCTGACTTGT 59.437 43.478 14.43 9.28 46.59 3.16
1556 1574 3.811497 TCACTGTGCAGAAATCTGACTTG 59.189 43.478 14.43 10.09 46.59 3.16
1557 1575 4.077300 TCACTGTGCAGAAATCTGACTT 57.923 40.909 14.43 0.15 46.59 3.01
1558 1576 3.758755 TCACTGTGCAGAAATCTGACT 57.241 42.857 14.43 0.00 46.59 3.41
1559 1577 4.453478 TCATTCACTGTGCAGAAATCTGAC 59.547 41.667 14.43 9.58 46.59 3.51
1560 1578 4.644498 TCATTCACTGTGCAGAAATCTGA 58.356 39.130 14.43 0.00 46.59 3.27
1561 1579 4.454847 ACTCATTCACTGTGCAGAAATCTG 59.545 41.667 6.17 6.05 46.40 2.90
1562 1580 4.649692 ACTCATTCACTGTGCAGAAATCT 58.350 39.130 6.17 0.00 0.00 2.40
1563 1581 4.453478 TGACTCATTCACTGTGCAGAAATC 59.547 41.667 6.17 2.91 0.00 2.17
1564 1582 4.392047 TGACTCATTCACTGTGCAGAAAT 58.608 39.130 6.17 3.07 0.00 2.17
1565 1583 3.807553 TGACTCATTCACTGTGCAGAAA 58.192 40.909 6.17 0.86 0.00 2.52
1566 1584 3.473923 TGACTCATTCACTGTGCAGAA 57.526 42.857 6.17 0.00 0.00 3.02
1567 1585 3.690475 ATGACTCATTCACTGTGCAGA 57.310 42.857 6.17 0.04 36.92 4.26
1568 1586 4.761235 AAATGACTCATTCACTGTGCAG 57.239 40.909 4.70 0.00 36.92 4.41
1569 1587 5.062528 TGTAAATGACTCATTCACTGTGCA 58.937 37.500 4.70 0.00 36.92 4.57
1570 1588 5.409520 TCTGTAAATGACTCATTCACTGTGC 59.590 40.000 4.70 0.00 36.92 4.57
1571 1589 7.606858 ATCTGTAAATGACTCATTCACTGTG 57.393 36.000 4.70 0.17 36.92 3.66
1572 1590 9.896645 AATATCTGTAAATGACTCATTCACTGT 57.103 29.630 4.70 0.40 36.92 3.55
1582 1600 9.857656 ACATGGATTCAATATCTGTAAATGACT 57.142 29.630 0.00 0.00 0.00 3.41
1591 1609 9.918630 GGGAATAAAACATGGATTCAATATCTG 57.081 33.333 0.00 0.00 32.30 2.90
1592 1610 9.659135 TGGGAATAAAACATGGATTCAATATCT 57.341 29.630 0.00 0.00 32.30 1.98
1721 1739 6.688578 TCACTCCAGTAGTTGCTAAGTAAAG 58.311 40.000 0.00 0.00 35.76 1.85
1780 1798 6.017026 GGCAAGAATAGAAAGTAGTAATGGCC 60.017 42.308 0.00 0.00 0.00 5.36
1784 1802 7.338710 TGCAGGCAAGAATAGAAAGTAGTAAT 58.661 34.615 0.00 0.00 0.00 1.89
1785 1803 6.707290 TGCAGGCAAGAATAGAAAGTAGTAA 58.293 36.000 0.00 0.00 0.00 2.24
1828 1846 3.209410 GCAGATAGCCAAGCTACAACAT 58.791 45.455 0.00 0.00 44.24 2.71
1898 1916 3.910627 AGTCCCACACTCTACCAAATCTT 59.089 43.478 0.00 0.00 0.00 2.40
2154 2173 6.406692 TCATTAACCTCAGGTGCTCTATAC 57.593 41.667 0.00 0.00 35.34 1.47
2292 2311 6.074648 TGGACTCACCCAAATATCAACTTTT 58.925 36.000 0.00 0.00 38.00 2.27
2310 2329 8.613060 ATCACATGTTCATATGTTATGGACTC 57.387 34.615 0.00 0.00 39.17 3.36
2407 2431 3.197983 ACTCAAGATGGGGCTAGTGTAAC 59.802 47.826 0.00 0.00 0.00 2.50
2438 2462 6.749118 GTGATCCAACAAACTAATCATTCTGC 59.251 38.462 0.00 0.00 0.00 4.26
2502 2538 6.040278 TGCAAATCACTTCAACATACTTTGGA 59.960 34.615 0.00 0.00 0.00 3.53
2597 2633 3.686726 GCAACTTCGACTCTCCATCAAAT 59.313 43.478 0.00 0.00 0.00 2.32
2657 2693 1.867233 GTGACACTGGTGCTGTACTTG 59.133 52.381 0.00 0.00 0.00 3.16
2792 2828 3.954258 ACCATGCTTATTTGGCTCCTAAC 59.046 43.478 0.00 0.00 0.00 2.34
2831 2867 8.834465 CAGACCTGTCAATTGGATAAAATCTAG 58.166 37.037 5.42 0.00 0.00 2.43
3139 3176 6.837568 TGGGTTGTAACACAAGGGTATTTTAA 59.162 34.615 0.00 0.00 39.84 1.52
3373 3412 9.941325 ATACAAAAATATGGAGTGATGCAAAAA 57.059 25.926 0.00 0.00 0.00 1.94
3402 3447 7.920682 ACCTCACAAAACAAAATATGACAGAAC 59.079 33.333 0.00 0.00 0.00 3.01
3511 4325 8.234546 GGATGCGAAATGAGAACTTTTTACTTA 58.765 33.333 0.00 0.00 0.00 2.24
3708 4527 3.343617 TGCATTGTACAAGGCCTAAGAC 58.656 45.455 34.56 12.56 46.35 3.01
3709 4528 3.712016 TGCATTGTACAAGGCCTAAGA 57.288 42.857 34.56 18.20 46.35 2.10
3710 4529 4.009675 TCTTGCATTGTACAAGGCCTAAG 58.990 43.478 34.56 30.21 46.35 2.18
3713 4532 2.584835 TCTTGCATTGTACAAGGCCT 57.415 45.000 34.56 0.00 46.35 5.19
3714 4533 2.736400 GCATCTTGCATTGTACAAGGCC 60.736 50.000 34.56 20.76 46.35 5.19
3715 4534 2.533266 GCATCTTGCATTGTACAAGGC 58.467 47.619 32.34 32.34 46.98 4.35
3727 4546 1.878734 GCATCTCCCTAAGCATCTTGC 59.121 52.381 0.00 0.00 45.46 4.01
3728 4547 3.488778 AGCATCTCCCTAAGCATCTTG 57.511 47.619 0.00 0.00 0.00 3.02
3729 4548 4.904251 TCTAAGCATCTCCCTAAGCATCTT 59.096 41.667 0.00 0.00 0.00 2.40
3730 4549 4.487804 TCTAAGCATCTCCCTAAGCATCT 58.512 43.478 0.00 0.00 0.00 2.90
3731 4550 4.526262 TCTCTAAGCATCTCCCTAAGCATC 59.474 45.833 0.00 0.00 0.00 3.91
3732 4551 4.487804 TCTCTAAGCATCTCCCTAAGCAT 58.512 43.478 0.00 0.00 0.00 3.79
3733 4552 3.916035 TCTCTAAGCATCTCCCTAAGCA 58.084 45.455 0.00 0.00 0.00 3.91
3734 4553 4.946478 TTCTCTAAGCATCTCCCTAAGC 57.054 45.455 0.00 0.00 0.00 3.09
3735 4554 9.267084 GTTTATTTCTCTAAGCATCTCCCTAAG 57.733 37.037 0.00 0.00 0.00 2.18
3736 4555 8.211629 GGTTTATTTCTCTAAGCATCTCCCTAA 58.788 37.037 0.00 0.00 0.00 2.69
3737 4556 7.347222 TGGTTTATTTCTCTAAGCATCTCCCTA 59.653 37.037 0.00 0.00 0.00 3.53
3738 4557 6.158695 TGGTTTATTTCTCTAAGCATCTCCCT 59.841 38.462 0.00 0.00 0.00 4.20
3739 4558 6.357367 TGGTTTATTTCTCTAAGCATCTCCC 58.643 40.000 0.00 0.00 0.00 4.30
3740 4559 7.051000 ACTGGTTTATTTCTCTAAGCATCTCC 58.949 38.462 0.00 0.00 0.00 3.71
3741 4560 7.984617 AGACTGGTTTATTTCTCTAAGCATCTC 59.015 37.037 0.00 0.00 0.00 2.75
3742 4561 7.856415 AGACTGGTTTATTTCTCTAAGCATCT 58.144 34.615 0.00 0.00 0.00 2.90
3743 4562 8.499403 AAGACTGGTTTATTTCTCTAAGCATC 57.501 34.615 0.00 0.00 0.00 3.91
3744 4563 8.870075 AAAGACTGGTTTATTTCTCTAAGCAT 57.130 30.769 0.00 0.00 0.00 3.79
3745 4564 8.157476 AGAAAGACTGGTTTATTTCTCTAAGCA 58.843 33.333 0.00 0.00 37.41 3.91
3746 4565 8.554835 AGAAAGACTGGTTTATTTCTCTAAGC 57.445 34.615 0.00 0.00 37.41 3.09
3751 4570 9.613957 GCTTAAAGAAAGACTGGTTTATTTCTC 57.386 33.333 0.00 0.00 40.23 2.87
3752 4571 9.131791 TGCTTAAAGAAAGACTGGTTTATTTCT 57.868 29.630 0.00 0.00 42.30 2.52
3753 4572 9.181805 GTGCTTAAAGAAAGACTGGTTTATTTC 57.818 33.333 2.05 0.00 37.38 2.17
3754 4573 8.141909 GGTGCTTAAAGAAAGACTGGTTTATTT 58.858 33.333 3.82 3.82 37.38 1.40
3755 4574 7.521585 CGGTGCTTAAAGAAAGACTGGTTTATT 60.522 37.037 0.00 0.00 37.38 1.40
3756 4575 6.072673 CGGTGCTTAAAGAAAGACTGGTTTAT 60.073 38.462 0.00 0.00 37.38 1.40
3757 4576 5.237779 CGGTGCTTAAAGAAAGACTGGTTTA 59.762 40.000 0.00 0.00 37.38 2.01
3758 4577 4.036380 CGGTGCTTAAAGAAAGACTGGTTT 59.964 41.667 0.00 0.00 37.38 3.27
3759 4578 3.564225 CGGTGCTTAAAGAAAGACTGGTT 59.436 43.478 0.00 0.00 37.38 3.67
3760 4579 3.139077 CGGTGCTTAAAGAAAGACTGGT 58.861 45.455 0.00 0.00 37.38 4.00
3761 4580 2.484264 CCGGTGCTTAAAGAAAGACTGG 59.516 50.000 0.00 0.00 37.38 4.00
3762 4581 3.058914 CACCGGTGCTTAAAGAAAGACTG 60.059 47.826 24.02 0.00 37.38 3.51
3763 4582 3.139077 CACCGGTGCTTAAAGAAAGACT 58.861 45.455 24.02 0.00 37.38 3.24
3764 4583 3.537793 CACCGGTGCTTAAAGAAAGAC 57.462 47.619 24.02 0.00 37.38 3.01
3777 4596 2.936498 CCTCTACAAATAAGCACCGGTG 59.064 50.000 30.66 30.66 0.00 4.94
3778 4597 2.093128 CCCTCTACAAATAAGCACCGGT 60.093 50.000 0.00 0.00 0.00 5.28
3779 4598 2.093128 ACCCTCTACAAATAAGCACCGG 60.093 50.000 0.00 0.00 0.00 5.28
3780 4599 3.261981 ACCCTCTACAAATAAGCACCG 57.738 47.619 0.00 0.00 0.00 4.94
3781 4600 5.105064 TGTCTACCCTCTACAAATAAGCACC 60.105 44.000 0.00 0.00 0.00 5.01
3782 4601 5.811100 GTGTCTACCCTCTACAAATAAGCAC 59.189 44.000 0.00 0.00 0.00 4.40
3783 4602 5.720041 AGTGTCTACCCTCTACAAATAAGCA 59.280 40.000 0.00 0.00 0.00 3.91
3784 4603 6.223351 AGTGTCTACCCTCTACAAATAAGC 57.777 41.667 0.00 0.00 0.00 3.09
3789 4608 8.755977 CCTAATTAAGTGTCTACCCTCTACAAA 58.244 37.037 0.00 0.00 0.00 2.83
3790 4609 7.147776 GCCTAATTAAGTGTCTACCCTCTACAA 60.148 40.741 0.00 0.00 0.00 2.41
3791 4610 6.323225 GCCTAATTAAGTGTCTACCCTCTACA 59.677 42.308 0.00 0.00 0.00 2.74
3792 4611 6.514705 CGCCTAATTAAGTGTCTACCCTCTAC 60.515 46.154 0.00 0.00 0.00 2.59
3793 4612 5.533903 CGCCTAATTAAGTGTCTACCCTCTA 59.466 44.000 0.00 0.00 0.00 2.43
3794 4613 4.341520 CGCCTAATTAAGTGTCTACCCTCT 59.658 45.833 0.00 0.00 0.00 3.69
3795 4614 4.099113 ACGCCTAATTAAGTGTCTACCCTC 59.901 45.833 0.00 0.00 0.00 4.30
3796 4615 4.028825 ACGCCTAATTAAGTGTCTACCCT 58.971 43.478 0.00 0.00 0.00 4.34
3797 4616 4.099113 AGACGCCTAATTAAGTGTCTACCC 59.901 45.833 22.85 2.83 37.30 3.69
3798 4617 5.041940 CAGACGCCTAATTAAGTGTCTACC 58.958 45.833 23.40 3.78 37.08 3.18
3799 4618 5.648572 ACAGACGCCTAATTAAGTGTCTAC 58.351 41.667 23.40 4.08 37.08 2.59
3800 4619 5.163581 GGACAGACGCCTAATTAAGTGTCTA 60.164 44.000 23.40 0.00 37.08 2.59
3801 4620 4.381718 GGACAGACGCCTAATTAAGTGTCT 60.382 45.833 19.92 19.92 38.75 3.41
3802 4621 3.864003 GGACAGACGCCTAATTAAGTGTC 59.136 47.826 16.64 16.64 33.77 3.67
3803 4622 3.259876 TGGACAGACGCCTAATTAAGTGT 59.740 43.478 0.00 0.00 0.00 3.55
3804 4623 3.857052 TGGACAGACGCCTAATTAAGTG 58.143 45.455 0.00 0.00 0.00 3.16
3805 4624 3.514309 ACTGGACAGACGCCTAATTAAGT 59.486 43.478 6.29 0.00 0.00 2.24
3806 4625 4.124851 ACTGGACAGACGCCTAATTAAG 57.875 45.455 6.29 0.00 0.00 1.85
3807 4626 4.951715 TCTACTGGACAGACGCCTAATTAA 59.048 41.667 6.29 0.00 0.00 1.40
3808 4627 4.529897 TCTACTGGACAGACGCCTAATTA 58.470 43.478 6.29 0.00 0.00 1.40
3809 4628 3.362706 TCTACTGGACAGACGCCTAATT 58.637 45.455 6.29 0.00 0.00 1.40
3810 4629 3.014304 TCTACTGGACAGACGCCTAAT 57.986 47.619 6.29 0.00 0.00 1.73
3811 4630 2.502142 TCTACTGGACAGACGCCTAA 57.498 50.000 6.29 0.00 0.00 2.69
3812 4631 2.502142 TTCTACTGGACAGACGCCTA 57.498 50.000 6.29 0.00 0.00 3.93
3813 4632 1.629043 TTTCTACTGGACAGACGCCT 58.371 50.000 6.29 0.00 0.00 5.52
3814 4633 2.674796 ATTTCTACTGGACAGACGCC 57.325 50.000 6.29 0.00 0.00 5.68
3815 4634 3.707793 CCTATTTCTACTGGACAGACGC 58.292 50.000 6.29 0.00 0.00 5.19
3816 4635 3.130516 TGCCTATTTCTACTGGACAGACG 59.869 47.826 6.29 0.00 0.00 4.18
3817 4636 4.160626 AGTGCCTATTTCTACTGGACAGAC 59.839 45.833 6.29 0.00 0.00 3.51
3818 4637 4.160439 CAGTGCCTATTTCTACTGGACAGA 59.840 45.833 6.29 0.00 37.48 3.41
3819 4638 4.437239 CAGTGCCTATTTCTACTGGACAG 58.563 47.826 0.00 0.00 37.48 3.51
3820 4639 4.471904 CAGTGCCTATTTCTACTGGACA 57.528 45.455 0.00 0.00 37.48 4.02
3836 4655 5.085087 CAGATTTTTCTGAAGCACCAGTGC 61.085 45.833 14.91 14.91 46.88 4.40
3837 4656 4.543692 CAGATTTTTCTGAAGCACCAGTG 58.456 43.478 0.00 0.00 39.99 3.66
3838 4657 3.571401 CCAGATTTTTCTGAAGCACCAGT 59.429 43.478 4.59 0.00 39.99 4.00
3839 4658 3.571401 ACCAGATTTTTCTGAAGCACCAG 59.429 43.478 4.59 0.00 39.99 4.00
3840 4659 3.565307 ACCAGATTTTTCTGAAGCACCA 58.435 40.909 4.59 0.00 39.99 4.17
3841 4660 4.590850 AACCAGATTTTTCTGAAGCACC 57.409 40.909 4.59 0.00 39.99 5.01
3842 4661 8.593492 AAATAAACCAGATTTTTCTGAAGCAC 57.407 30.769 4.59 0.00 39.99 4.40
3843 4662 9.612066 AAAAATAAACCAGATTTTTCTGAAGCA 57.388 25.926 4.59 0.00 40.70 3.91
3852 4671 9.489084 GGTGCTTAGAAAAATAAACCAGATTTT 57.511 29.630 0.00 0.00 37.96 1.82
3853 4672 8.870116 AGGTGCTTAGAAAAATAAACCAGATTT 58.130 29.630 0.00 0.00 0.00 2.17
3854 4673 8.422577 AGGTGCTTAGAAAAATAAACCAGATT 57.577 30.769 0.00 0.00 0.00 2.40
3855 4674 7.122799 GGAGGTGCTTAGAAAAATAAACCAGAT 59.877 37.037 0.00 0.00 0.00 2.90
3856 4675 6.433093 GGAGGTGCTTAGAAAAATAAACCAGA 59.567 38.462 0.00 0.00 0.00 3.86
3857 4676 6.350194 GGGAGGTGCTTAGAAAAATAAACCAG 60.350 42.308 0.00 0.00 0.00 4.00
3858 4677 5.479027 GGGAGGTGCTTAGAAAAATAAACCA 59.521 40.000 0.00 0.00 0.00 3.67
3859 4678 5.715279 AGGGAGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
3860 4679 6.835819 AGGGAGGTGCTTAGAAAAATAAAC 57.164 37.500 0.00 0.00 0.00 2.01
3861 4680 7.122204 GCTTAGGGAGGTGCTTAGAAAAATAAA 59.878 37.037 0.00 0.00 0.00 1.40
3862 4681 6.602009 GCTTAGGGAGGTGCTTAGAAAAATAA 59.398 38.462 0.00 0.00 0.00 1.40
3863 4682 6.120220 GCTTAGGGAGGTGCTTAGAAAAATA 58.880 40.000 0.00 0.00 0.00 1.40
3864 4683 4.950475 GCTTAGGGAGGTGCTTAGAAAAAT 59.050 41.667 0.00 0.00 0.00 1.82
3865 4684 4.202524 TGCTTAGGGAGGTGCTTAGAAAAA 60.203 41.667 0.00 0.00 0.00 1.94
3866 4685 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
3867 4686 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
3868 4687 2.236395 GTGCTTAGGGAGGTGCTTAGAA 59.764 50.000 0.00 0.00 0.00 2.10
3869 4688 1.831736 GTGCTTAGGGAGGTGCTTAGA 59.168 52.381 0.00 0.00 0.00 2.10
3870 4689 1.134371 GGTGCTTAGGGAGGTGCTTAG 60.134 57.143 0.00 0.00 0.00 2.18
3871 4690 0.909623 GGTGCTTAGGGAGGTGCTTA 59.090 55.000 0.00 0.00 0.00 3.09
3872 4691 0.842467 AGGTGCTTAGGGAGGTGCTT 60.842 55.000 0.00 0.00 0.00 3.91
3873 4692 0.042731 TAGGTGCTTAGGGAGGTGCT 59.957 55.000 0.00 0.00 0.00 4.40
3874 4693 0.466124 CTAGGTGCTTAGGGAGGTGC 59.534 60.000 0.00 0.00 0.00 5.01
3875 4694 0.466124 GCTAGGTGCTTAGGGAGGTG 59.534 60.000 0.00 0.00 38.95 4.00
3876 4695 0.042731 TGCTAGGTGCTTAGGGAGGT 59.957 55.000 0.00 0.00 43.37 3.85
3877 4696 1.428869 ATGCTAGGTGCTTAGGGAGG 58.571 55.000 0.00 0.00 43.37 4.30
3878 4697 2.171448 ACAATGCTAGGTGCTTAGGGAG 59.829 50.000 0.00 0.00 43.37 4.30
3879 4698 2.196595 ACAATGCTAGGTGCTTAGGGA 58.803 47.619 0.00 0.00 43.37 4.20
3880 4699 2.717639 ACAATGCTAGGTGCTTAGGG 57.282 50.000 0.00 0.00 43.37 3.53
3881 4700 4.137116 TGTACAATGCTAGGTGCTTAGG 57.863 45.455 0.00 0.00 43.37 2.69
3882 4701 4.572389 CCTTGTACAATGCTAGGTGCTTAG 59.428 45.833 9.13 0.00 43.37 2.18
3883 4702 4.513442 CCTTGTACAATGCTAGGTGCTTA 58.487 43.478 9.13 0.00 43.37 3.09
3884 4703 3.347216 CCTTGTACAATGCTAGGTGCTT 58.653 45.455 9.13 0.00 43.37 3.91
3885 4704 2.941415 GCCTTGTACAATGCTAGGTGCT 60.941 50.000 23.62 0.00 43.37 4.40
3886 4705 1.401905 GCCTTGTACAATGCTAGGTGC 59.598 52.381 23.62 7.87 43.25 5.01
3887 4706 2.017049 GGCCTTGTACAATGCTAGGTG 58.983 52.381 27.69 7.79 33.37 4.00
3888 4707 1.916181 AGGCCTTGTACAATGCTAGGT 59.084 47.619 27.69 12.79 33.37 3.08
3889 4708 2.717639 AGGCCTTGTACAATGCTAGG 57.282 50.000 27.69 18.10 33.37 3.02
3890 4709 5.368145 TCATAAGGCCTTGTACAATGCTAG 58.632 41.667 28.77 16.39 33.37 3.42
3891 4710 5.366482 TCATAAGGCCTTGTACAATGCTA 57.634 39.130 28.77 17.40 33.37 3.49
3892 4711 4.202441 CTCATAAGGCCTTGTACAATGCT 58.798 43.478 28.77 16.07 33.37 3.79
3893 4712 3.243201 GCTCATAAGGCCTTGTACAATGC 60.243 47.826 28.77 23.06 0.00 3.56
3894 4713 4.202441 AGCTCATAAGGCCTTGTACAATG 58.798 43.478 28.77 21.61 0.00 2.82
3895 4714 4.510167 AGCTCATAAGGCCTTGTACAAT 57.490 40.909 28.77 10.23 0.00 2.71
3896 4715 4.469945 AGTAGCTCATAAGGCCTTGTACAA 59.530 41.667 28.77 7.95 0.00 2.41
3897 4716 4.030913 AGTAGCTCATAAGGCCTTGTACA 58.969 43.478 28.77 8.38 0.00 2.90
3898 4717 4.674281 AGTAGCTCATAAGGCCTTGTAC 57.326 45.455 28.77 15.41 0.00 2.90
3899 4718 5.693769 AAAGTAGCTCATAAGGCCTTGTA 57.306 39.130 28.77 9.67 0.00 2.41
3900 4719 4.576330 AAAGTAGCTCATAAGGCCTTGT 57.424 40.909 28.77 19.61 0.00 3.16
3901 4720 4.702131 ACAAAAGTAGCTCATAAGGCCTTG 59.298 41.667 28.77 13.61 0.00 3.61
3902 4721 4.702131 CACAAAAGTAGCTCATAAGGCCTT 59.298 41.667 24.18 24.18 0.00 4.35
3903 4722 4.265073 CACAAAAGTAGCTCATAAGGCCT 58.735 43.478 0.00 0.00 0.00 5.19
3904 4723 3.378427 CCACAAAAGTAGCTCATAAGGCC 59.622 47.826 0.00 0.00 0.00 5.19
3905 4724 3.181496 GCCACAAAAGTAGCTCATAAGGC 60.181 47.826 0.00 0.00 0.00 4.35
3906 4725 4.009675 TGCCACAAAAGTAGCTCATAAGG 58.990 43.478 0.00 0.00 0.00 2.69
3921 4740 0.036732 GACCCAGTCAGATGCCACAA 59.963 55.000 0.00 0.00 32.09 3.33
4082 5081 4.499183 CAACCAGTCACACTATCTCTTCC 58.501 47.826 0.00 0.00 0.00 3.46
4255 5254 1.671166 GGTCACCCAAAATGCACCC 59.329 57.895 0.00 0.00 0.00 4.61
4299 5298 7.282224 CGTCAAACAAGGGATTCCTATTATCAA 59.718 37.037 0.00 0.00 44.07 2.57
4425 5424 5.683743 GTGTTACTTGCTGTATTTCGCAAAA 59.316 36.000 0.00 0.00 44.54 2.44
4557 5556 5.215160 CAAAACTGTTGAAGGGATCTTTCG 58.785 41.667 0.00 0.00 32.52 3.46
4561 5560 3.815401 CGACAAAACTGTTGAAGGGATCT 59.185 43.478 0.00 0.00 0.00 2.75
4780 5779 1.419374 GTGGTGTAGTCTCAGCAACG 58.581 55.000 0.31 0.00 45.20 4.10
4908 5907 4.300345 TCTTAAATTATGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
4925 5924 5.813672 ACACTAGTGTCAAAAACGCTCTTAA 59.186 36.000 22.95 0.00 45.69 1.85
4973 5998 5.485353 CCCTCTGTCCCATAATATAAGAGCA 59.515 44.000 0.00 0.00 0.00 4.26
4974 5999 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
5006 6031 9.671279 TGCTAGAAATATTCTCAAGACAAATGA 57.329 29.630 0.00 0.00 41.14 2.57
5144 6169 1.188863 GGAATGCCTGCCATGTCTTT 58.811 50.000 0.00 0.00 33.49 2.52
5294 6319 1.605232 CTGTTCATCTGTGTTGCTGCA 59.395 47.619 0.00 0.00 0.00 4.41
5318 6343 2.683211 AGGAACTCACCTTGGCATTT 57.317 45.000 0.00 0.00 36.86 2.32
5363 6388 5.190528 TCCTGATGGCTGATCTACTTTCTTT 59.809 40.000 0.00 0.00 31.55 2.52
5552 6578 1.778027 AACGACCGCAGAAAAACCGG 61.778 55.000 0.00 0.00 46.97 5.28
5554 6580 1.202211 ACAAACGACCGCAGAAAAACC 60.202 47.619 0.00 0.00 0.00 3.27
5556 6582 1.738350 TGACAAACGACCGCAGAAAAA 59.262 42.857 0.00 0.00 0.00 1.94
5701 6727 4.800914 GCACTTTGAGAGTAAGCTCAGGAA 60.801 45.833 0.00 0.00 44.93 3.36
5703 6729 2.999355 GCACTTTGAGAGTAAGCTCAGG 59.001 50.000 0.00 0.00 44.93 3.86
5704 6730 3.679025 CAGCACTTTGAGAGTAAGCTCAG 59.321 47.826 0.00 0.00 44.93 3.35
5787 6823 8.629158 CAGTGCTTGCCCTTACAATAATTATAA 58.371 33.333 0.00 0.00 0.00 0.98
5788 6824 8.165239 CAGTGCTTGCCCTTACAATAATTATA 57.835 34.615 0.00 0.00 0.00 0.98
5879 6922 1.112459 GAACAGTTTCAACTTGCGCG 58.888 50.000 0.00 0.00 37.08 6.86
5920 6963 0.631753 TGGACCAGAAACAAACCCCA 59.368 50.000 0.00 0.00 0.00 4.96
5965 7010 4.978438 TGTGGCCTACTACCTGTTAAAA 57.022 40.909 3.32 0.00 0.00 1.52
5969 7014 3.182152 AGAATGTGGCCTACTACCTGTT 58.818 45.455 3.32 0.00 0.00 3.16
6010 7056 4.021368 CGGGGAAAGAGAGACTTGAACTTA 60.021 45.833 0.00 0.00 38.98 2.24
6020 7066 2.879103 ATTTTGCGGGGAAAGAGAGA 57.121 45.000 0.00 0.00 0.00 3.10
6088 7143 9.699410 AGATGCTCTTATAGTTATAGATGCTCT 57.301 33.333 0.00 0.00 0.00 4.09
6097 7152 8.924303 TGTGGTTGTAGATGCTCTTATAGTTAT 58.076 33.333 0.00 0.00 0.00 1.89
6098 7153 8.301252 TGTGGTTGTAGATGCTCTTATAGTTA 57.699 34.615 0.00 0.00 0.00 2.24
6099 7154 7.182817 TGTGGTTGTAGATGCTCTTATAGTT 57.817 36.000 0.00 0.00 0.00 2.24
6102 7157 7.182817 ACTTGTGGTTGTAGATGCTCTTATA 57.817 36.000 0.00 0.00 0.00 0.98
6103 7158 6.054860 ACTTGTGGTTGTAGATGCTCTTAT 57.945 37.500 0.00 0.00 0.00 1.73
6105 7160 4.357918 ACTTGTGGTTGTAGATGCTCTT 57.642 40.909 0.00 0.00 0.00 2.85
6107 7162 4.994852 TGTTACTTGTGGTTGTAGATGCTC 59.005 41.667 0.00 0.00 0.00 4.26
6108 7163 4.968259 TGTTACTTGTGGTTGTAGATGCT 58.032 39.130 0.00 0.00 0.00 3.79
6110 7165 8.567948 AGAATTTGTTACTTGTGGTTGTAGATG 58.432 33.333 0.00 0.00 0.00 2.90
6128 7364 1.234615 CGGACGCACCCAGAATTTGT 61.235 55.000 0.00 0.00 34.64 2.83
6152 7388 2.616376 GGTTGTGTGTTGTGCATCACTA 59.384 45.455 16.34 5.56 35.11 2.74
6159 7395 1.069500 GTATCCGGTTGTGTGTTGTGC 60.069 52.381 0.00 0.00 0.00 4.57
6160 7396 2.214347 TGTATCCGGTTGTGTGTTGTG 58.786 47.619 0.00 0.00 0.00 3.33
6161 7397 2.623878 TGTATCCGGTTGTGTGTTGT 57.376 45.000 0.00 0.00 0.00 3.32
6162 7398 3.334691 AGATGTATCCGGTTGTGTGTTG 58.665 45.455 0.00 0.00 0.00 3.33
6163 7399 3.695830 AGATGTATCCGGTTGTGTGTT 57.304 42.857 0.00 0.00 0.00 3.32
6165 7401 3.123804 GCTAGATGTATCCGGTTGTGTG 58.876 50.000 0.00 0.00 0.00 3.82
6166 7402 3.031736 AGCTAGATGTATCCGGTTGTGT 58.968 45.455 0.00 0.00 0.00 3.72
6173 7477 3.582714 TGCATGAGCTAGATGTATCCG 57.417 47.619 0.00 0.00 42.74 4.18
6195 7531 3.500299 TGTGTTTAGGTACGTACGCTACA 59.500 43.478 16.72 15.96 0.00 2.74
6219 7555 5.180492 GTCAATTTTTGGTAGTCCGATGACA 59.820 40.000 0.00 0.00 44.33 3.58
6259 7595 5.530915 ACTTCTTCGGTCATCATTTTGTTCA 59.469 36.000 0.00 0.00 0.00 3.18
6264 7600 6.127897 GGATGAACTTCTTCGGTCATCATTTT 60.128 38.462 17.51 0.00 36.61 1.82
6268 7604 3.260632 TGGATGAACTTCTTCGGTCATCA 59.739 43.478 17.51 4.68 36.61 3.07
6321 7660 0.320374 TCTTCAACCACTACTGCCGG 59.680 55.000 0.00 0.00 0.00 6.13
6324 7663 0.790814 GCGTCTTCAACCACTACTGC 59.209 55.000 0.00 0.00 0.00 4.40
6331 7681 0.878523 CCGTTCTGCGTCTTCAACCA 60.879 55.000 0.00 0.00 39.32 3.67
6384 7734 1.355971 ACGGATCGGACAACAAATCG 58.644 50.000 7.35 0.00 0.00 3.34
6385 7735 2.727916 GCAACGGATCGGACAACAAATC 60.728 50.000 7.35 0.00 0.00 2.17
6386 7736 1.199097 GCAACGGATCGGACAACAAAT 59.801 47.619 7.35 0.00 0.00 2.32
6387 7737 0.589223 GCAACGGATCGGACAACAAA 59.411 50.000 7.35 0.00 0.00 2.83
6388 7738 1.231958 GGCAACGGATCGGACAACAA 61.232 55.000 7.35 0.00 0.00 2.83
6389 7739 1.669760 GGCAACGGATCGGACAACA 60.670 57.895 7.35 0.00 0.00 3.33
6390 7740 3.174788 GGCAACGGATCGGACAAC 58.825 61.111 7.35 0.00 0.00 3.32
6434 7784 3.087253 CATGGCCGGACTACCCCA 61.087 66.667 9.82 3.17 33.33 4.96
6435 7785 3.873812 CCATGGCCGGACTACCCC 61.874 72.222 9.82 0.00 0.00 4.95
6436 7786 4.564110 GCCATGGCCGGACTACCC 62.564 72.222 27.24 0.00 34.56 3.69
6437 7787 4.910585 CGCCATGGCCGGACTACC 62.911 72.222 30.79 0.00 37.98 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.