Multiple sequence alignment - TraesCS6B01G225800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G225800 chr6B 100.000 4400 0 0 1 4400 347232908 347228509 0.000000e+00 8126.0
1 TraesCS6B01G225800 chr6D 93.194 3056 114 33 716 3697 262749936 262752971 0.000000e+00 4405.0
2 TraesCS6B01G225800 chr6D 88.081 688 56 19 3722 4400 262753066 262753736 0.000000e+00 793.0
3 TraesCS6B01G225800 chr6D 84.825 257 23 5 417 658 258227637 258227382 1.220000e-60 244.0
4 TraesCS6B01G225800 chr6D 92.308 52 3 1 369 420 262749674 262749724 6.100000e-09 73.1
5 TraesCS6B01G225800 chr6A 91.357 3066 132 41 722 3695 356969753 356972777 0.000000e+00 4071.0
6 TraesCS6B01G225800 chr6A 91.000 700 36 12 3722 4400 356972874 356973567 0.000000e+00 918.0
7 TraesCS6B01G225800 chr6A 83.871 248 23 9 432 662 101994524 101994771 2.060000e-53 220.0
8 TraesCS6B01G225800 chr6A 100.000 28 0 0 671 698 356969538 356969565 8.000000e-03 52.8
9 TraesCS6B01G225800 chr2B 97.011 368 10 1 1 368 74973470 74973836 6.250000e-173 617.0
10 TraesCS6B01G225800 chr2B 96.216 370 12 1 1 368 654459447 654459078 4.870000e-169 604.0
11 TraesCS6B01G225800 chr2B 86.066 244 17 7 431 658 206287165 206286923 3.400000e-61 246.0
12 TraesCS6B01G225800 chr2B 84.109 258 23 6 416 658 539293746 539293492 2.650000e-57 233.0
13 TraesCS6B01G225800 chr2B 84.906 212 22 5 432 634 168605943 168606153 5.770000e-49 206.0
14 TraesCS6B01G225800 chr7B 96.739 368 12 0 1 368 722987289 722987656 8.090000e-172 614.0
15 TraesCS6B01G225800 chr7B 96.477 369 12 1 1 369 206213931 206213564 3.760000e-170 608.0
16 TraesCS6B01G225800 chr7B 96.196 368 14 0 1 368 296882514 296882881 1.750000e-168 603.0
17 TraesCS6B01G225800 chr5B 96.467 368 13 0 1 368 434142732 434142365 3.760000e-170 608.0
18 TraesCS6B01G225800 chr5B 93.434 396 21 5 1 393 76448369 76447976 2.280000e-162 582.0
19 TraesCS6B01G225800 chr5B 81.377 247 31 7 431 662 41992862 41992616 2.090000e-43 187.0
20 TraesCS6B01G225800 chr3B 96.467 368 12 1 1 368 757634393 757634759 1.350000e-169 606.0
21 TraesCS6B01G225800 chr3B 82.090 268 30 10 406 658 755478032 755478296 3.450000e-51 213.0
22 TraesCS6B01G225800 chr4B 96.196 368 12 1 1 368 524709496 524709131 6.300000e-168 601.0
23 TraesCS6B01G225800 chr4B 89.855 69 2 1 595 658 489932204 489932136 2.820000e-12 84.2
24 TraesCS6B01G225800 chr5A 84.733 262 22 10 417 662 196838696 196838955 3.400000e-61 246.0
25 TraesCS6B01G225800 chr1A 84.615 260 21 8 417 658 15196232 15195974 1.580000e-59 241.0
26 TraesCS6B01G225800 chr1A 85.537 242 19 4 431 658 498181390 498181629 5.690000e-59 239.0
27 TraesCS6B01G225800 chr2D 84.151 265 23 9 417 664 402717615 402717353 5.690000e-59 239.0
28 TraesCS6B01G225800 chr1D 84.231 260 23 8 415 658 399440097 399439840 2.050000e-58 237.0
29 TraesCS6B01G225800 chr4A 85.246 244 18 8 431 658 121151172 121151413 7.360000e-58 235.0
30 TraesCS6B01G225800 chr4A 83.673 245 20 11 432 659 704301594 704301353 3.450000e-51 213.0
31 TraesCS6B01G225800 chr1B 83.268 257 25 8 417 658 589076449 589076196 2.060000e-53 220.0
32 TraesCS6B01G225800 chr2A 83.600 250 18 9 431 662 588288100 588287856 3.450000e-51 213.0
33 TraesCS6B01G225800 chrUn 85.116 215 19 3 431 634 380507172 380506960 1.600000e-49 207.0
34 TraesCS6B01G225800 chr3D 80.723 83 16 0 2889 2971 4972426 4972508 1.020000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G225800 chr6B 347228509 347232908 4399 True 8126.000000 8126 100.000000 1 4400 1 chr6B.!!$R1 4399
1 TraesCS6B01G225800 chr6D 262749674 262753736 4062 False 1757.033333 4405 91.194333 369 4400 3 chr6D.!!$F1 4031
2 TraesCS6B01G225800 chr6A 356969538 356973567 4029 False 1680.600000 4071 94.119000 671 4400 3 chr6A.!!$F2 3729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 361 0.034670 CTGCTGCTAGCCTTTTCCCT 60.035 55.0 13.29 0.00 41.51 4.20 F
406 407 0.171007 GGCTAAGCATTGCGCAAGAA 59.829 50.0 28.62 5.72 46.13 2.52 F
1047 1248 0.327591 CCCTCTTGCTTCAAGCTCCT 59.672 55.0 11.57 0.00 42.97 3.69 F
2772 3003 0.036952 AGTTGATGACCAGTGGCTCG 60.037 55.0 9.78 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1802 0.881796 GCGGAAAAGGGAGGAAACAG 59.118 55.000 0.0 0.0 0.00 3.16 R
1823 2036 1.691976 ACTCCGTGTTCAATCCACTGA 59.308 47.619 0.0 0.0 0.00 3.41 R
3030 3261 1.394618 TGTTTTTGAACCACTCGGGG 58.605 50.000 0.0 0.0 42.91 5.73 R
3825 4150 0.249953 TGGGTCGCTCGCTTGTAAAA 60.250 50.000 0.0 0.0 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.987404 ATTTGTGGTCTCGCAGGC 58.013 55.556 0.00 0.00 34.60 4.85
18 19 1.073025 ATTTGTGGTCTCGCAGGCA 59.927 52.632 0.00 0.00 34.60 4.75
19 20 0.322816 ATTTGTGGTCTCGCAGGCAT 60.323 50.000 0.00 0.00 34.60 4.40
20 21 0.537143 TTTGTGGTCTCGCAGGCATT 60.537 50.000 0.00 0.00 34.60 3.56
21 22 0.537143 TTGTGGTCTCGCAGGCATTT 60.537 50.000 0.00 0.00 34.60 2.32
22 23 1.236616 TGTGGTCTCGCAGGCATTTG 61.237 55.000 0.00 0.00 0.00 2.32
23 24 1.073025 TGGTCTCGCAGGCATTTGT 59.927 52.632 0.00 0.00 0.00 2.83
24 25 0.323302 TGGTCTCGCAGGCATTTGTA 59.677 50.000 0.00 0.00 0.00 2.41
25 26 1.065491 TGGTCTCGCAGGCATTTGTAT 60.065 47.619 0.00 0.00 0.00 2.29
26 27 1.331756 GGTCTCGCAGGCATTTGTATG 59.668 52.381 0.00 0.00 34.76 2.39
27 28 2.009774 GTCTCGCAGGCATTTGTATGT 58.990 47.619 0.00 0.00 34.12 2.29
28 29 2.009051 TCTCGCAGGCATTTGTATGTG 58.991 47.619 0.00 0.00 34.12 3.21
29 30 1.739466 CTCGCAGGCATTTGTATGTGT 59.261 47.619 0.00 0.00 34.12 3.72
30 31 2.935849 CTCGCAGGCATTTGTATGTGTA 59.064 45.455 0.00 0.00 34.12 2.90
31 32 3.540617 TCGCAGGCATTTGTATGTGTAT 58.459 40.909 0.00 0.00 34.12 2.29
32 33 3.559655 TCGCAGGCATTTGTATGTGTATC 59.440 43.478 0.00 0.00 34.12 2.24
33 34 3.312146 CGCAGGCATTTGTATGTGTATCA 59.688 43.478 0.00 0.00 34.12 2.15
34 35 4.023792 CGCAGGCATTTGTATGTGTATCAT 60.024 41.667 0.00 0.00 40.25 2.45
35 36 5.217393 GCAGGCATTTGTATGTGTATCATG 58.783 41.667 0.00 0.00 37.91 3.07
36 37 5.008911 GCAGGCATTTGTATGTGTATCATGA 59.991 40.000 0.00 0.00 37.91 3.07
37 38 6.294342 GCAGGCATTTGTATGTGTATCATGAT 60.294 38.462 13.81 13.81 37.91 2.45
38 39 7.081976 CAGGCATTTGTATGTGTATCATGATG 58.918 38.462 18.72 0.00 37.91 3.07
39 40 6.999871 AGGCATTTGTATGTGTATCATGATGA 59.000 34.615 18.72 0.00 37.91 2.92
40 41 7.040892 AGGCATTTGTATGTGTATCATGATGAC 60.041 37.037 18.72 14.29 37.91 3.06
41 42 7.255208 GGCATTTGTATGTGTATCATGATGACA 60.255 37.037 18.72 19.00 37.91 3.58
42 43 8.294577 GCATTTGTATGTGTATCATGATGACAT 58.705 33.333 26.12 26.12 37.91 3.06
46 47 9.617523 TTGTATGTGTATCATGATGACATTTCT 57.382 29.630 27.21 14.80 37.91 2.52
50 51 9.788889 ATGTGTATCATGATGACATTTCTATGT 57.211 29.630 21.16 6.09 40.34 2.29
51 52 9.048446 TGTGTATCATGATGACATTTCTATGTG 57.952 33.333 18.72 0.00 44.90 3.21
52 53 8.013947 GTGTATCATGATGACATTTCTATGTGC 58.986 37.037 18.72 0.00 44.90 4.57
53 54 7.935210 TGTATCATGATGACATTTCTATGTGCT 59.065 33.333 18.72 0.00 44.90 4.40
54 55 9.428097 GTATCATGATGACATTTCTATGTGCTA 57.572 33.333 18.72 0.00 44.90 3.49
55 56 8.913487 ATCATGATGACATTTCTATGTGCTAA 57.087 30.769 7.59 0.00 44.90 3.09
56 57 8.735692 TCATGATGACATTTCTATGTGCTAAA 57.264 30.769 0.00 0.00 44.90 1.85
57 58 8.833493 TCATGATGACATTTCTATGTGCTAAAG 58.167 33.333 0.00 0.00 44.90 1.85
58 59 8.833493 CATGATGACATTTCTATGTGCTAAAGA 58.167 33.333 0.00 0.00 44.90 2.52
59 60 8.969260 TGATGACATTTCTATGTGCTAAAGAT 57.031 30.769 0.00 0.00 44.90 2.40
60 61 9.399797 TGATGACATTTCTATGTGCTAAAGATT 57.600 29.630 0.00 0.00 44.90 2.40
61 62 9.875675 GATGACATTTCTATGTGCTAAAGATTC 57.124 33.333 0.00 0.00 44.90 2.52
62 63 9.624373 ATGACATTTCTATGTGCTAAAGATTCT 57.376 29.630 0.00 0.00 44.90 2.40
63 64 9.453572 TGACATTTCTATGTGCTAAAGATTCTT 57.546 29.630 0.00 0.00 44.90 2.52
64 65 9.928236 GACATTTCTATGTGCTAAAGATTCTTC 57.072 33.333 0.00 0.00 44.90 2.87
65 66 9.678260 ACATTTCTATGTGCTAAAGATTCTTCT 57.322 29.630 0.00 0.00 43.29 2.85
98 99 8.987890 ACTGTTCAAATACAAAACAAATATGCC 58.012 29.630 0.00 0.00 32.89 4.40
99 100 8.893219 TGTTCAAATACAAAACAAATATGCCA 57.107 26.923 0.00 0.00 30.39 4.92
100 101 9.330063 TGTTCAAATACAAAACAAATATGCCAA 57.670 25.926 0.00 0.00 30.39 4.52
143 144 7.151103 GCAGTAGCGAGTGTATAAAAGTTAG 57.849 40.000 3.48 0.00 0.00 2.34
144 145 6.291690 GCAGTAGCGAGTGTATAAAAGTTAGC 60.292 42.308 3.48 0.00 0.00 3.09
145 146 6.750501 CAGTAGCGAGTGTATAAAAGTTAGCA 59.249 38.462 0.00 0.00 0.00 3.49
146 147 6.973474 AGTAGCGAGTGTATAAAAGTTAGCAG 59.027 38.462 0.00 0.00 0.00 4.24
147 148 4.567159 AGCGAGTGTATAAAAGTTAGCAGC 59.433 41.667 0.00 0.00 0.00 5.25
148 149 4.328983 GCGAGTGTATAAAAGTTAGCAGCA 59.671 41.667 0.00 0.00 0.00 4.41
149 150 5.500931 GCGAGTGTATAAAAGTTAGCAGCAG 60.501 44.000 0.00 0.00 0.00 4.24
150 151 5.500931 CGAGTGTATAAAAGTTAGCAGCAGC 60.501 44.000 0.00 0.00 42.56 5.25
178 179 4.435436 CAGTAGCGCGTCCAGGCA 62.435 66.667 8.43 0.00 0.00 4.75
179 180 3.691342 AGTAGCGCGTCCAGGCAA 61.691 61.111 8.43 0.00 0.00 4.52
180 181 2.740826 GTAGCGCGTCCAGGCAAA 60.741 61.111 8.43 0.00 0.00 3.68
181 182 2.434185 TAGCGCGTCCAGGCAAAG 60.434 61.111 8.43 0.00 0.00 2.77
188 189 4.386951 TCCAGGCAAAGCGCGCTA 62.387 61.111 36.73 13.79 43.84 4.26
189 190 3.869272 CCAGGCAAAGCGCGCTAG 61.869 66.667 36.73 29.41 43.84 3.42
190 191 2.815211 CAGGCAAAGCGCGCTAGA 60.815 61.111 36.73 0.00 43.84 2.43
191 192 2.510238 AGGCAAAGCGCGCTAGAG 60.510 61.111 36.73 26.42 43.84 2.43
192 193 4.229479 GGCAAAGCGCGCTAGAGC 62.229 66.667 36.73 33.55 43.84 4.09
218 219 2.299993 CAGTAGCGATCTTCTGCCAA 57.700 50.000 0.00 0.00 32.31 4.52
219 220 1.929836 CAGTAGCGATCTTCTGCCAAC 59.070 52.381 0.00 0.00 32.31 3.77
220 221 1.550524 AGTAGCGATCTTCTGCCAACA 59.449 47.619 0.00 0.00 0.00 3.33
221 222 1.929836 GTAGCGATCTTCTGCCAACAG 59.070 52.381 0.00 0.00 45.95 3.16
222 223 1.023513 AGCGATCTTCTGCCAACAGC 61.024 55.000 0.00 0.00 44.10 4.40
237 238 2.345244 AGCGCTGCTGCTACACTT 59.655 55.556 10.39 0.00 45.14 3.16
238 239 2.031516 AGCGCTGCTGCTACACTTG 61.032 57.895 10.39 0.00 45.14 3.16
239 240 2.320587 GCGCTGCTGCTACACTTGT 61.321 57.895 14.03 0.00 36.97 3.16
240 241 1.494628 CGCTGCTGCTACACTTGTG 59.505 57.895 14.03 0.00 36.97 3.33
241 242 1.224069 CGCTGCTGCTACACTTGTGT 61.224 55.000 14.03 11.30 36.97 3.72
242 243 1.795768 GCTGCTGCTACACTTGTGTA 58.204 50.000 8.53 12.31 36.03 2.90
243 244 1.728971 GCTGCTGCTACACTTGTGTAG 59.271 52.381 27.27 27.27 43.30 2.74
261 262 4.435436 CAGTAGCGCCGGTGAGCA 62.435 66.667 21.76 0.00 40.10 4.26
262 263 4.436998 AGTAGCGCCGGTGAGCAC 62.437 66.667 21.76 12.41 40.10 4.40
276 277 2.923854 GCACGCGCTACTGCTATG 59.076 61.111 5.73 0.00 36.97 2.23
277 278 1.878522 GCACGCGCTACTGCTATGT 60.879 57.895 5.73 0.00 36.97 2.29
278 279 1.920051 CACGCGCTACTGCTATGTG 59.080 57.895 5.73 0.00 36.97 3.21
279 280 0.802222 CACGCGCTACTGCTATGTGT 60.802 55.000 5.73 0.00 36.97 3.72
280 281 0.108804 ACGCGCTACTGCTATGTGTT 60.109 50.000 5.73 0.00 36.97 3.32
281 282 1.133598 ACGCGCTACTGCTATGTGTTA 59.866 47.619 5.73 0.00 36.97 2.41
282 283 1.781429 CGCGCTACTGCTATGTGTTAG 59.219 52.381 5.56 0.00 36.97 2.34
303 304 2.987821 GCTGTAGCGCCTTATTAGTAGC 59.012 50.000 2.29 0.00 0.00 3.58
311 312 4.660105 CGCCTTATTAGTAGCGTCTATCC 58.340 47.826 0.00 0.00 43.45 2.59
312 313 4.438472 CGCCTTATTAGTAGCGTCTATCCC 60.438 50.000 0.00 0.00 43.45 3.85
313 314 4.142204 GCCTTATTAGTAGCGTCTATCCCC 60.142 50.000 0.00 0.00 0.00 4.81
314 315 5.014858 CCTTATTAGTAGCGTCTATCCCCA 58.985 45.833 0.00 0.00 0.00 4.96
315 316 5.105837 CCTTATTAGTAGCGTCTATCCCCAC 60.106 48.000 0.00 0.00 0.00 4.61
316 317 1.888215 TAGTAGCGTCTATCCCCACG 58.112 55.000 0.00 0.00 39.09 4.94
321 322 2.716814 CGTCTATCCCCACGCTACT 58.283 57.895 0.00 0.00 0.00 2.57
322 323 0.311165 CGTCTATCCCCACGCTACTG 59.689 60.000 0.00 0.00 0.00 2.74
323 324 1.688772 GTCTATCCCCACGCTACTGA 58.311 55.000 0.00 0.00 0.00 3.41
324 325 2.240279 GTCTATCCCCACGCTACTGAT 58.760 52.381 0.00 0.00 0.00 2.90
325 326 3.418995 GTCTATCCCCACGCTACTGATA 58.581 50.000 0.00 0.00 0.00 2.15
326 327 3.190953 GTCTATCCCCACGCTACTGATAC 59.809 52.174 0.00 0.00 0.00 2.24
327 328 2.082140 ATCCCCACGCTACTGATACA 57.918 50.000 0.00 0.00 0.00 2.29
328 329 2.082140 TCCCCACGCTACTGATACAT 57.918 50.000 0.00 0.00 0.00 2.29
329 330 1.961394 TCCCCACGCTACTGATACATC 59.039 52.381 0.00 0.00 0.00 3.06
330 331 1.964223 CCCCACGCTACTGATACATCT 59.036 52.381 0.00 0.00 0.00 2.90
331 332 3.154710 CCCCACGCTACTGATACATCTA 58.845 50.000 0.00 0.00 0.00 1.98
332 333 3.572682 CCCCACGCTACTGATACATCTAA 59.427 47.826 0.00 0.00 0.00 2.10
333 334 4.038763 CCCCACGCTACTGATACATCTAAA 59.961 45.833 0.00 0.00 0.00 1.85
334 335 5.452776 CCCCACGCTACTGATACATCTAAAA 60.453 44.000 0.00 0.00 0.00 1.52
335 336 5.462398 CCCACGCTACTGATACATCTAAAAC 59.538 44.000 0.00 0.00 0.00 2.43
336 337 5.462398 CCACGCTACTGATACATCTAAAACC 59.538 44.000 0.00 0.00 0.00 3.27
337 338 5.462398 CACGCTACTGATACATCTAAAACCC 59.538 44.000 0.00 0.00 0.00 4.11
338 339 4.680110 CGCTACTGATACATCTAAAACCCG 59.320 45.833 0.00 0.00 0.00 5.28
339 340 4.448060 GCTACTGATACATCTAAAACCCGC 59.552 45.833 0.00 0.00 0.00 6.13
340 341 3.454375 ACTGATACATCTAAAACCCGCG 58.546 45.455 0.00 0.00 0.00 6.46
341 342 2.206750 TGATACATCTAAAACCCGCGC 58.793 47.619 0.00 0.00 0.00 6.86
342 343 2.159014 TGATACATCTAAAACCCGCGCT 60.159 45.455 5.56 0.00 0.00 5.92
343 344 1.647346 TACATCTAAAACCCGCGCTG 58.353 50.000 5.56 0.00 0.00 5.18
344 345 1.062525 CATCTAAAACCCGCGCTGC 59.937 57.895 5.56 0.00 0.00 5.25
345 346 1.078426 ATCTAAAACCCGCGCTGCT 60.078 52.632 5.56 0.00 0.00 4.24
346 347 1.369091 ATCTAAAACCCGCGCTGCTG 61.369 55.000 5.56 0.00 0.00 4.41
347 348 3.667429 CTAAAACCCGCGCTGCTGC 62.667 63.158 5.56 5.34 0.00 5.25
349 350 2.789845 TAAAACCCGCGCTGCTGCTA 62.790 55.000 14.03 0.00 36.97 3.49
355 356 3.130160 GCGCTGCTGCTAGCCTTT 61.130 61.111 13.29 0.00 41.51 3.11
356 357 2.694760 GCGCTGCTGCTAGCCTTTT 61.695 57.895 13.29 0.00 41.51 2.27
357 358 1.427020 CGCTGCTGCTAGCCTTTTC 59.573 57.895 13.29 0.00 41.51 2.29
358 359 1.805910 GCTGCTGCTAGCCTTTTCC 59.194 57.895 13.29 0.00 41.51 3.13
359 360 1.661498 GCTGCTGCTAGCCTTTTCCC 61.661 60.000 13.29 0.00 41.51 3.97
360 361 0.034670 CTGCTGCTAGCCTTTTCCCT 60.035 55.000 13.29 0.00 41.51 4.20
361 362 1.210478 CTGCTGCTAGCCTTTTCCCTA 59.790 52.381 13.29 0.00 41.51 3.53
362 363 1.633432 TGCTGCTAGCCTTTTCCCTAA 59.367 47.619 13.29 0.00 41.51 2.69
363 364 2.242196 TGCTGCTAGCCTTTTCCCTAAT 59.758 45.455 13.29 0.00 41.51 1.73
364 365 3.458118 TGCTGCTAGCCTTTTCCCTAATA 59.542 43.478 13.29 0.00 41.51 0.98
365 366 4.068599 GCTGCTAGCCTTTTCCCTAATAG 58.931 47.826 13.29 0.00 34.48 1.73
366 367 4.445019 GCTGCTAGCCTTTTCCCTAATAGT 60.445 45.833 13.29 0.00 34.48 2.12
367 368 5.036117 TGCTAGCCTTTTCCCTAATAGTG 57.964 43.478 13.29 0.00 0.00 2.74
396 397 2.906354 CTAGAAACACCGGCTAAGCAT 58.094 47.619 0.00 0.00 0.00 3.79
397 398 2.200373 AGAAACACCGGCTAAGCATT 57.800 45.000 0.00 0.00 0.00 3.56
403 404 2.484662 CGGCTAAGCATTGCGCAA 59.515 55.556 27.24 27.24 46.13 4.85
406 407 0.171007 GGCTAAGCATTGCGCAAGAA 59.829 50.000 28.62 5.72 46.13 2.52
416 417 3.988379 TTGCGCAAGAACTCAGAAATT 57.012 38.095 21.02 0.00 43.02 1.82
417 418 5.393124 CATTGCGCAAGAACTCAGAAATTA 58.607 37.500 28.62 0.00 43.02 1.40
418 419 4.404507 TGCGCAAGAACTCAGAAATTAC 57.595 40.909 8.16 0.00 43.02 1.89
419 420 4.065088 TGCGCAAGAACTCAGAAATTACT 58.935 39.130 8.16 0.00 43.02 2.24
420 421 4.152402 TGCGCAAGAACTCAGAAATTACTC 59.848 41.667 8.16 0.00 43.02 2.59
421 422 4.390297 GCGCAAGAACTCAGAAATTACTCT 59.610 41.667 0.30 0.00 43.02 3.24
422 423 5.445275 GCGCAAGAACTCAGAAATTACTCTC 60.445 44.000 0.30 0.00 43.02 3.20
423 424 5.635280 CGCAAGAACTCAGAAATTACTCTCA 59.365 40.000 0.00 0.00 43.02 3.27
424 425 6.400515 CGCAAGAACTCAGAAATTACTCTCAC 60.401 42.308 0.00 0.00 43.02 3.51
425 426 6.128418 GCAAGAACTCAGAAATTACTCTCACC 60.128 42.308 0.00 0.00 0.00 4.02
426 427 5.715070 AGAACTCAGAAATTACTCTCACCG 58.285 41.667 0.00 0.00 0.00 4.94
427 428 5.244178 AGAACTCAGAAATTACTCTCACCGT 59.756 40.000 0.00 0.00 0.00 4.83
428 429 5.061920 ACTCAGAAATTACTCTCACCGTC 57.938 43.478 0.00 0.00 0.00 4.79
429 430 4.523173 ACTCAGAAATTACTCTCACCGTCA 59.477 41.667 0.00 0.00 0.00 4.35
430 431 4.806330 TCAGAAATTACTCTCACCGTCAC 58.194 43.478 0.00 0.00 0.00 3.67
431 432 4.523173 TCAGAAATTACTCTCACCGTCACT 59.477 41.667 0.00 0.00 0.00 3.41
432 433 5.010719 TCAGAAATTACTCTCACCGTCACTT 59.989 40.000 0.00 0.00 0.00 3.16
433 434 5.696724 CAGAAATTACTCTCACCGTCACTTT 59.303 40.000 0.00 0.00 0.00 2.66
434 435 6.202954 CAGAAATTACTCTCACCGTCACTTTT 59.797 38.462 0.00 0.00 0.00 2.27
435 436 6.766467 AGAAATTACTCTCACCGTCACTTTTT 59.234 34.615 0.00 0.00 0.00 1.94
436 437 7.929785 AGAAATTACTCTCACCGTCACTTTTTA 59.070 33.333 0.00 0.00 0.00 1.52
437 438 7.653767 AATTACTCTCACCGTCACTTTTTAG 57.346 36.000 0.00 0.00 0.00 1.85
438 439 4.667519 ACTCTCACCGTCACTTTTTAGT 57.332 40.909 0.00 0.00 0.00 2.24
439 440 4.618965 ACTCTCACCGTCACTTTTTAGTC 58.381 43.478 0.00 0.00 0.00 2.59
440 441 4.341520 ACTCTCACCGTCACTTTTTAGTCT 59.658 41.667 0.00 0.00 0.00 3.24
441 442 4.617959 TCTCACCGTCACTTTTTAGTCTG 58.382 43.478 0.00 0.00 0.00 3.51
442 443 3.128349 TCACCGTCACTTTTTAGTCTGC 58.872 45.455 0.00 0.00 0.00 4.26
443 444 2.869801 CACCGTCACTTTTTAGTCTGCA 59.130 45.455 0.00 0.00 0.00 4.41
444 445 3.498397 CACCGTCACTTTTTAGTCTGCAT 59.502 43.478 0.00 0.00 0.00 3.96
445 446 4.688879 CACCGTCACTTTTTAGTCTGCATA 59.311 41.667 0.00 0.00 0.00 3.14
446 447 5.351465 CACCGTCACTTTTTAGTCTGCATAT 59.649 40.000 0.00 0.00 0.00 1.78
447 448 6.533723 CACCGTCACTTTTTAGTCTGCATATA 59.466 38.462 0.00 0.00 0.00 0.86
448 449 7.064134 CACCGTCACTTTTTAGTCTGCATATAA 59.936 37.037 0.00 0.00 0.00 0.98
449 450 7.277981 ACCGTCACTTTTTAGTCTGCATATAAG 59.722 37.037 0.00 0.00 0.00 1.73
450 451 7.491372 CCGTCACTTTTTAGTCTGCATATAAGA 59.509 37.037 0.00 0.00 0.00 2.10
451 452 9.035607 CGTCACTTTTTAGTCTGCATATAAGAT 57.964 33.333 0.00 0.00 0.00 2.40
461 462 8.659925 AGTCTGCATATAAGATTTGTTCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
462 463 8.263640 AGTCTGCATATAAGATTTGTTCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
463 464 8.547069 GTCTGCATATAAGATTTGTTCAGAGTC 58.453 37.037 0.00 0.00 0.00 3.36
464 465 8.260114 TCTGCATATAAGATTTGTTCAGAGTCA 58.740 33.333 0.00 0.00 0.00 3.41
465 466 8.791327 TGCATATAAGATTTGTTCAGAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
466 467 9.230122 TGCATATAAGATTTGTTCAGAGTCAAA 57.770 29.630 0.00 5.65 37.82 2.69
467 468 9.495754 GCATATAAGATTTGTTCAGAGTCAAAC 57.504 33.333 0.00 0.00 36.58 2.93
471 472 9.956720 ATAAGATTTGTTCAGAGTCAAACTTTG 57.043 29.630 9.12 0.00 36.58 2.77
472 473 7.396540 AGATTTGTTCAGAGTCAAACTTTGT 57.603 32.000 9.12 0.00 36.58 2.83
473 474 7.830739 AGATTTGTTCAGAGTCAAACTTTGTT 58.169 30.769 9.12 0.00 36.58 2.83
474 475 8.956426 AGATTTGTTCAGAGTCAAACTTTGTTA 58.044 29.630 9.12 0.00 36.58 2.41
475 476 9.567848 GATTTGTTCAGAGTCAAACTTTGTTAA 57.432 29.630 9.12 0.00 36.58 2.01
476 477 8.736751 TTTGTTCAGAGTCAAACTTTGTTAAC 57.263 30.769 0.00 0.00 32.70 2.01
477 478 7.681939 TGTTCAGAGTCAAACTTTGTTAACT 57.318 32.000 7.22 0.00 32.70 2.24
478 479 8.106247 TGTTCAGAGTCAAACTTTGTTAACTT 57.894 30.769 7.22 0.00 32.70 2.66
479 480 8.573035 TGTTCAGAGTCAAACTTTGTTAACTTT 58.427 29.630 7.22 0.00 32.70 2.66
480 481 8.850452 GTTCAGAGTCAAACTTTGTTAACTTTG 58.150 33.333 7.22 9.09 32.70 2.77
481 482 8.330466 TCAGAGTCAAACTTTGTTAACTTTGA 57.670 30.769 13.70 13.70 32.70 2.69
482 483 8.234546 TCAGAGTCAAACTTTGTTAACTTTGAC 58.765 33.333 27.41 27.41 46.84 3.18
485 486 7.876896 GTCAAACTTTGTTAACTTTGACCAA 57.123 32.000 25.85 4.68 43.35 3.67
486 487 7.949186 GTCAAACTTTGTTAACTTTGACCAAG 58.051 34.615 25.85 12.63 43.35 3.61
544 545 8.606040 TGAAATCAATATCGTTAGATGCATCA 57.394 30.769 27.81 11.65 37.70 3.07
545 546 9.223099 TGAAATCAATATCGTTAGATGCATCAT 57.777 29.630 27.81 14.55 37.70 2.45
546 547 9.486857 GAAATCAATATCGTTAGATGCATCATG 57.513 33.333 27.81 13.87 37.70 3.07
547 548 8.782339 AATCAATATCGTTAGATGCATCATGA 57.218 30.769 27.81 18.46 37.70 3.07
548 549 8.782339 ATCAATATCGTTAGATGCATCATGAA 57.218 30.769 27.81 15.61 37.70 2.57
549 550 8.606040 TCAATATCGTTAGATGCATCATGAAA 57.394 30.769 27.81 13.39 37.70 2.69
550 551 9.223099 TCAATATCGTTAGATGCATCATGAAAT 57.777 29.630 27.81 16.72 37.70 2.17
555 556 8.437360 TCGTTAGATGCATCATGAAATAAAGT 57.563 30.769 27.81 5.73 0.00 2.66
556 557 8.892723 TCGTTAGATGCATCATGAAATAAAGTT 58.107 29.630 27.81 5.53 0.00 2.66
557 558 9.507280 CGTTAGATGCATCATGAAATAAAGTTT 57.493 29.630 27.81 5.10 0.00 2.66
563 564 9.754382 ATGCATCATGAAATAAAGTTTCATACC 57.246 29.630 13.73 5.73 44.60 2.73
564 565 8.747471 TGCATCATGAAATAAAGTTTCATACCA 58.253 29.630 13.73 7.60 44.60 3.25
565 566 9.754382 GCATCATGAAATAAAGTTTCATACCAT 57.246 29.630 13.73 6.06 44.60 3.55
581 582 9.582431 TTTCATACCATATAGCTTTAGTATCGC 57.418 33.333 0.00 0.00 0.00 4.58
582 583 8.288689 TCATACCATATAGCTTTAGTATCGCA 57.711 34.615 0.00 0.00 0.00 5.10
583 584 8.406297 TCATACCATATAGCTTTAGTATCGCAG 58.594 37.037 0.00 0.00 0.00 5.18
584 585 6.835819 ACCATATAGCTTTAGTATCGCAGA 57.164 37.500 0.00 0.00 45.75 4.26
585 586 7.411486 ACCATATAGCTTTAGTATCGCAGAT 57.589 36.000 0.00 0.00 45.12 2.90
586 587 7.841956 ACCATATAGCTTTAGTATCGCAGATT 58.158 34.615 0.00 0.00 45.12 2.40
587 588 8.314751 ACCATATAGCTTTAGTATCGCAGATTT 58.685 33.333 0.00 0.00 45.12 2.17
588 589 9.155975 CCATATAGCTTTAGTATCGCAGATTTT 57.844 33.333 0.00 0.00 45.12 1.82
591 592 8.894768 ATAGCTTTAGTATCGCAGATTTTTCT 57.105 30.769 0.00 0.00 45.12 2.52
592 593 9.982651 ATAGCTTTAGTATCGCAGATTTTTCTA 57.017 29.630 0.00 0.00 45.12 2.10
593 594 8.132604 AGCTTTAGTATCGCAGATTTTTCTAC 57.867 34.615 0.00 0.00 45.12 2.59
594 595 7.764443 AGCTTTAGTATCGCAGATTTTTCTACA 59.236 33.333 0.00 0.00 45.12 2.74
595 596 8.388103 GCTTTAGTATCGCAGATTTTTCTACAA 58.612 33.333 0.00 0.00 45.12 2.41
598 599 7.907214 AGTATCGCAGATTTTTCTACAAAGT 57.093 32.000 0.00 0.00 45.12 2.66
599 600 8.324163 AGTATCGCAGATTTTTCTACAAAGTT 57.676 30.769 0.00 0.00 45.12 2.66
600 601 8.230486 AGTATCGCAGATTTTTCTACAAAGTTG 58.770 33.333 0.00 0.00 45.12 3.16
601 602 5.757886 TCGCAGATTTTTCTACAAAGTTGG 58.242 37.500 0.00 0.00 0.00 3.77
602 603 5.298276 TCGCAGATTTTTCTACAAAGTTGGT 59.702 36.000 0.00 0.00 0.00 3.67
603 604 5.625311 CGCAGATTTTTCTACAAAGTTGGTC 59.375 40.000 0.00 0.00 0.00 4.02
604 605 6.503524 GCAGATTTTTCTACAAAGTTGGTCA 58.496 36.000 0.00 0.00 0.00 4.02
605 606 6.978080 GCAGATTTTTCTACAAAGTTGGTCAA 59.022 34.615 0.00 0.00 0.00 3.18
606 607 7.491048 GCAGATTTTTCTACAAAGTTGGTCAAA 59.509 33.333 0.00 0.00 0.00 2.69
607 608 9.533253 CAGATTTTTCTACAAAGTTGGTCAAAT 57.467 29.630 0.00 0.00 0.00 2.32
654 655 9.769093 CCAAATATGTAGACTAAAAAGAAACGG 57.231 33.333 0.00 0.00 0.00 4.44
657 658 8.943909 ATATGTAGACTAAAAAGAAACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
658 659 6.409524 TGTAGACTAAAAAGAAACGGAGGA 57.590 37.500 0.00 0.00 0.00 3.71
659 660 6.819284 TGTAGACTAAAAAGAAACGGAGGAA 58.181 36.000 0.00 0.00 0.00 3.36
698 699 2.807631 CTTGGTGCCATGCAAGCGTC 62.808 60.000 7.50 3.75 41.47 5.19
699 700 4.120331 GGTGCCATGCAAGCGTCC 62.120 66.667 7.50 8.47 41.47 4.79
703 864 3.049674 CCATGCAAGCGTCCGTGT 61.050 61.111 0.00 0.00 0.00 4.49
706 867 1.596752 ATGCAAGCGTCCGTGTCAA 60.597 52.632 0.00 0.00 0.00 3.18
708 869 2.954753 GCAAGCGTCCGTGTCAAGG 61.955 63.158 0.00 0.00 0.00 3.61
711 872 0.878961 AAGCGTCCGTGTCAAGGAAC 60.879 55.000 9.25 5.15 39.84 3.62
759 924 3.427098 GGTCATGCATTCACATCACACAG 60.427 47.826 0.00 0.00 0.00 3.66
783 948 4.724279 AAATAACCTTGGTCTCCACAGT 57.276 40.909 0.00 0.00 30.78 3.55
798 963 2.101249 CCACAGTGTGCCAATCAAAACT 59.899 45.455 18.21 0.00 31.34 2.66
799 964 3.117794 CACAGTGTGCCAATCAAAACTG 58.882 45.455 10.97 0.00 42.71 3.16
800 965 3.023119 ACAGTGTGCCAATCAAAACTGA 58.977 40.909 7.56 0.00 41.01 3.41
801 966 3.181487 ACAGTGTGCCAATCAAAACTGAC 60.181 43.478 7.56 0.00 41.01 3.51
802 967 3.023119 AGTGTGCCAATCAAAACTGACA 58.977 40.909 0.00 0.00 0.00 3.58
803 968 3.115554 GTGTGCCAATCAAAACTGACAC 58.884 45.455 0.00 0.00 0.00 3.67
804 969 2.223456 TGTGCCAATCAAAACTGACACG 60.223 45.455 0.00 0.00 0.00 4.49
806 971 1.336755 GCCAATCAAAACTGACACGGT 59.663 47.619 0.00 0.00 0.00 4.83
823 1004 1.270305 CGGTGAGCAGAAACTTCCTCA 60.270 52.381 0.00 0.00 32.35 3.86
827 1008 3.683822 GTGAGCAGAAACTTCCTCATCAG 59.316 47.826 0.00 0.00 36.78 2.90
846 1027 0.460811 GCTCTCCGATGTGATGTGCA 60.461 55.000 0.00 0.00 0.00 4.57
869 1050 2.887733 CGACGTTTAACTGCTCAACAC 58.112 47.619 0.00 0.00 0.00 3.32
874 1059 5.646606 ACGTTTAACTGCTCAACACAAAAT 58.353 33.333 0.00 0.00 0.00 1.82
877 1062 6.507771 CGTTTAACTGCTCAACACAAAATTGG 60.508 38.462 0.00 0.00 0.00 3.16
887 1072 0.755686 ACAAAATTGGCGGCCTGAAA 59.244 45.000 21.46 6.65 0.00 2.69
987 1188 1.474077 CCATTACCAGAAGCAACAGCC 59.526 52.381 0.00 0.00 0.00 4.85
1047 1248 0.327591 CCCTCTTGCTTCAAGCTCCT 59.672 55.000 11.57 0.00 42.97 3.69
1086 1287 5.249393 ACTCCAAAACATCACACTAGGATCT 59.751 40.000 0.00 0.00 0.00 2.75
1185 1386 1.313812 CCGACGCCTCTGTCTACCTT 61.314 60.000 0.00 0.00 36.71 3.50
1437 1650 1.338020 CAGAGCTTTGAACACCCAACC 59.662 52.381 0.00 0.00 0.00 3.77
1589 1802 1.375523 CTGTTCCCTACACCGTGGC 60.376 63.158 3.03 0.00 32.10 5.01
1594 1807 1.072505 CCCTACACCGTGGCTGTTT 59.927 57.895 3.03 0.00 0.00 2.83
1633 1846 5.768980 TGATCCTCCATATTGGGATTCTC 57.231 43.478 0.00 0.00 39.63 2.87
1757 1970 0.541063 TCACCGGCAGACTTCTACCA 60.541 55.000 0.00 0.00 29.60 3.25
1823 2036 0.255318 CCCAAGAAGGCAGCTCAGAT 59.745 55.000 0.00 0.00 35.39 2.90
1858 2071 2.268298 CGGAGTGGAAAGTTATGGACG 58.732 52.381 0.00 0.00 0.00 4.79
1887 2100 0.603975 GAAACTTCTGTCGGGCTGCT 60.604 55.000 0.00 0.00 0.00 4.24
1890 2103 3.889134 CTTCTGTCGGGCTGCTGCA 62.889 63.158 17.89 0.88 41.91 4.41
2035 2248 1.322442 AGGTTGCAAGCAAGACTTCC 58.678 50.000 28.75 9.93 36.04 3.46
2077 2290 7.255766 GCTTGGATGATACTGAATCTACTCAGA 60.256 40.741 7.57 0.00 44.82 3.27
2079 2292 8.718158 TGGATGATACTGAATCTACTCAGAAT 57.282 34.615 7.57 0.00 44.82 2.40
2266 2479 3.261981 ACGGAATGGAAGGTGACATAC 57.738 47.619 0.00 0.00 0.00 2.39
2299 2512 6.265422 AGTTTTTATCAAAGTTCCCAGGACTG 59.735 38.462 0.00 0.00 0.00 3.51
2302 2515 6.884472 TTATCAAAGTTCCCAGGACTGATA 57.116 37.500 0.00 0.00 0.00 2.15
2336 2549 2.431057 AGTCGGCCAGTAACTCCAATAG 59.569 50.000 2.24 0.00 0.00 1.73
2434 2665 5.621197 TTTTGGATCTTACCGTGTCATTG 57.379 39.130 0.00 0.00 0.00 2.82
2436 2667 1.940613 GGATCTTACCGTGTCATTGGC 59.059 52.381 0.00 0.00 0.00 4.52
2581 2812 2.612221 GGTATCGTATACAAGGGCCAGC 60.612 54.545 6.18 0.00 0.00 4.85
2712 2943 2.616842 CAGAAACTTGGTACGGTTGCTT 59.383 45.455 3.65 0.00 31.96 3.91
2722 2953 1.034838 ACGGTTGCTTGGTTTCTGCA 61.035 50.000 0.00 0.00 34.69 4.41
2725 2956 1.559831 GTTGCTTGGTTTCTGCACAC 58.440 50.000 0.00 0.00 36.37 3.82
2765 2996 2.029380 TGGTGTACGAGTTGATGACCAG 60.029 50.000 0.00 0.00 0.00 4.00
2772 3003 0.036952 AGTTGATGACCAGTGGCTCG 60.037 55.000 9.78 0.00 0.00 5.03
2886 3117 5.711506 ACATGAGGAATGCAACACTCAAATA 59.288 36.000 17.68 0.16 42.55 1.40
3099 3330 3.806949 AGTTTTGGGGTGATCTTGCTA 57.193 42.857 0.00 0.00 0.00 3.49
3131 3362 2.109126 GCAGACGGAATGTGGAGCC 61.109 63.158 0.00 0.00 0.00 4.70
3186 3417 4.339247 ACATATTGGGCAAATGACTGCTAC 59.661 41.667 0.00 0.00 42.25 3.58
3211 3442 2.039084 AGTGGGAGGCTTGACTTGTTAG 59.961 50.000 0.00 0.00 0.00 2.34
3311 3542 2.432972 GCCAACAATGCGGCCAAG 60.433 61.111 2.24 0.00 42.82 3.61
3348 3579 2.092753 ACAGATGCTTGATGGATCCGTT 60.093 45.455 8.18 0.00 43.44 4.44
3349 3580 2.547211 CAGATGCTTGATGGATCCGTTC 59.453 50.000 8.18 7.73 43.44 3.95
3363 3594 1.677633 CGTTCCAATCCCCACACCC 60.678 63.158 0.00 0.00 0.00 4.61
3384 3615 3.139770 CCCCTGATCCATCTTCCTTCATT 59.860 47.826 0.00 0.00 0.00 2.57
3455 3686 7.387948 GCGGTGTGAAATAAGAGTATATTGGAT 59.612 37.037 0.00 0.00 0.00 3.41
3456 3687 8.712363 CGGTGTGAAATAAGAGTATATTGGATG 58.288 37.037 0.00 0.00 0.00 3.51
3457 3688 9.561069 GGTGTGAAATAAGAGTATATTGGATGT 57.439 33.333 0.00 0.00 0.00 3.06
3468 3699 9.642343 AGAGTATATTGGATGTACTTGACTACA 57.358 33.333 0.00 0.00 37.33 2.74
3483 3714 7.960793 ACTTGACTACAGCAAACGATAAATAC 58.039 34.615 0.00 0.00 0.00 1.89
3499 3730 7.595502 ACGATAAATACGAGTGATGATTCCTTC 59.404 37.037 0.00 0.00 34.70 3.46
3507 3738 6.536582 ACGAGTGATGATTCCTTCAAATGTAG 59.463 38.462 0.00 0.00 38.03 2.74
3513 3744 8.956426 TGATGATTCCTTCAAATGTAGGTAAAC 58.044 33.333 6.05 0.96 38.03 2.01
3519 3750 6.464749 TCCTTCAAATGTAGGTAAACGGAAGT 60.465 38.462 6.05 0.00 38.77 3.01
3599 3849 9.580916 GTAATATTCATGTACTGTTTATGTGCG 57.419 33.333 0.00 0.00 0.00 5.34
3615 3865 1.004918 GCGGTACCACAGTGAAGCT 60.005 57.895 13.54 0.00 0.00 3.74
3625 3875 5.994250 ACCACAGTGAAGCTATGAATGTAT 58.006 37.500 0.62 0.00 0.00 2.29
3633 3883 6.197842 GTGAAGCTATGAATGTATTGCTTTGC 59.802 38.462 10.72 5.67 44.88 3.68
3667 3917 9.348476 TGTGCATATTTTGGTATATTGCTTAGA 57.652 29.630 0.00 0.00 0.00 2.10
3668 3918 9.831737 GTGCATATTTTGGTATATTGCTTAGAG 57.168 33.333 0.00 0.00 0.00 2.43
3677 3931 9.716531 TTGGTATATTGCTTAGAGATCATCAAG 57.283 33.333 0.00 0.00 0.00 3.02
3697 3951 1.135575 GCTGGAAGATGCAAGGAAACG 60.136 52.381 0.00 0.00 34.07 3.60
3711 3980 1.340697 GGAAACGGGCTGGTTAGGAAT 60.341 52.381 0.00 0.00 0.00 3.01
3714 3983 0.988832 ACGGGCTGGTTAGGAATCAA 59.011 50.000 0.00 0.00 0.00 2.57
3742 4066 6.745907 GGTAAGAACAATGATTTAAGCGTTCC 59.254 38.462 0.00 0.00 34.65 3.62
3817 4142 1.638529 ACAACTAGCAGCAGGACTCT 58.361 50.000 0.00 0.00 0.00 3.24
3825 4150 1.610102 GCAGCAGGACTCTCATGTTGT 60.610 52.381 3.30 0.00 40.61 3.32
3831 4156 4.515191 GCAGGACTCTCATGTTGTTTTACA 59.485 41.667 0.00 0.00 29.72 2.41
3844 4169 0.249953 TTTTACAAGCGAGCGACCCA 60.250 50.000 0.00 0.00 0.00 4.51
3938 4263 8.934507 AACTTAGACAACTGCATCTATACTTC 57.065 34.615 0.00 0.00 0.00 3.01
3957 4282 6.736110 ACTTCTTAGTGTAACAGTGGGTAA 57.264 37.500 0.00 0.00 41.43 2.85
3961 4286 9.715121 CTTCTTAGTGTAACAGTGGGTAATAAA 57.285 33.333 0.00 0.00 41.43 1.40
3969 4294 9.575868 TGTAACAGTGGGTAATAAAAATGAGAA 57.424 29.630 0.00 0.00 0.00 2.87
4007 4332 4.495911 TTGAATGCAAGCATTACAACGA 57.504 36.364 19.21 5.35 45.50 3.85
4016 4341 5.108254 GCAAGCATTACAACGAAAAGAACAG 60.108 40.000 0.00 0.00 0.00 3.16
4020 4345 6.038271 AGCATTACAACGAAAAGAACAGAAGT 59.962 34.615 0.00 0.00 0.00 3.01
4021 4346 6.691388 GCATTACAACGAAAAGAACAGAAGTT 59.309 34.615 0.00 0.00 41.64 2.66
4035 4364 6.382869 AACAGAAGTTCTCAATCTTGTTGG 57.617 37.500 1.26 0.00 30.46 3.77
4042 4371 6.064060 AGTTCTCAATCTTGTTGGTCATGAA 58.936 36.000 0.00 0.00 34.65 2.57
4054 4383 6.957631 TGTTGGTCATGAAATCTAGTATGGT 58.042 36.000 0.00 0.00 0.00 3.55
4062 4391 8.004801 TCATGAAATCTAGTATGGTAGAGTCCA 58.995 37.037 0.00 0.00 42.01 4.02
4151 4480 4.268405 GGTGCAACATGCTTACAAATATGC 59.732 41.667 0.00 0.00 45.31 3.14
4274 4616 9.778741 CCATATTTAGAATTAGTAGGCTGTTGA 57.221 33.333 0.00 0.00 0.00 3.18
4327 4669 8.344446 GGTGTATACCAAATATTAACATCCCC 57.656 38.462 3.35 0.00 46.71 4.81
4329 4671 9.357161 GTGTATACCAAATATTAACATCCCCAA 57.643 33.333 0.00 0.00 0.00 4.12
4330 4672 9.581289 TGTATACCAAATATTAACATCCCCAAG 57.419 33.333 0.00 0.00 0.00 3.61
4331 4673 9.582648 GTATACCAAATATTAACATCCCCAAGT 57.417 33.333 0.00 0.00 0.00 3.16
4332 4674 6.790232 ACCAAATATTAACATCCCCAAGTG 57.210 37.500 0.00 0.00 0.00 3.16
4335 4677 7.456269 ACCAAATATTAACATCCCCAAGTGAAA 59.544 33.333 0.00 0.00 0.00 2.69
4336 4678 7.763985 CCAAATATTAACATCCCCAAGTGAAAC 59.236 37.037 0.00 0.00 0.00 2.78
4337 4679 6.693315 ATATTAACATCCCCAAGTGAAACG 57.307 37.500 0.00 0.00 45.86 3.60
4338 4680 2.649531 AACATCCCCAAGTGAAACGA 57.350 45.000 0.00 0.00 45.86 3.85
4339 4681 2.185004 ACATCCCCAAGTGAAACGAG 57.815 50.000 0.00 0.00 45.86 4.18
4340 4682 1.697432 ACATCCCCAAGTGAAACGAGA 59.303 47.619 0.00 0.00 45.86 4.04
4354 4698 7.159372 AGTGAAACGAGAAGTAAACCACATAT 58.841 34.615 0.00 0.00 45.86 1.78
4396 4740 7.042051 TGAGAATAAATGCAATAAGTAGTCCGC 60.042 37.037 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.322816 ATGCCTGCGAGACCACAAAT 60.323 50.000 0.00 0.00 0.00 2.32
1 2 0.537143 AATGCCTGCGAGACCACAAA 60.537 50.000 0.00 0.00 0.00 2.83
2 3 0.537143 AAATGCCTGCGAGACCACAA 60.537 50.000 0.00 0.00 0.00 3.33
3 4 1.073025 AAATGCCTGCGAGACCACA 59.927 52.632 0.00 0.00 0.00 4.17
4 5 1.237285 ACAAATGCCTGCGAGACCAC 61.237 55.000 0.00 0.00 0.00 4.16
5 6 0.323302 TACAAATGCCTGCGAGACCA 59.677 50.000 0.00 0.00 0.00 4.02
6 7 1.331756 CATACAAATGCCTGCGAGACC 59.668 52.381 0.00 0.00 0.00 3.85
7 8 2.009774 ACATACAAATGCCTGCGAGAC 58.990 47.619 0.00 0.00 36.50 3.36
8 9 2.009051 CACATACAAATGCCTGCGAGA 58.991 47.619 0.00 0.00 36.50 4.04
9 10 1.739466 ACACATACAAATGCCTGCGAG 59.261 47.619 0.00 0.00 36.50 5.03
10 11 1.819928 ACACATACAAATGCCTGCGA 58.180 45.000 0.00 0.00 36.50 5.10
11 12 3.312146 TGATACACATACAAATGCCTGCG 59.688 43.478 0.00 0.00 36.50 5.18
12 13 4.898829 TGATACACATACAAATGCCTGC 57.101 40.909 0.00 0.00 36.50 4.85
13 14 6.622833 TCATGATACACATACAAATGCCTG 57.377 37.500 0.00 0.00 37.46 4.85
14 15 6.999871 TCATCATGATACACATACAAATGCCT 59.000 34.615 8.15 0.00 37.46 4.75
15 16 7.080099 GTCATCATGATACACATACAAATGCC 58.920 38.462 8.15 0.00 37.46 4.40
16 17 7.641760 TGTCATCATGATACACATACAAATGC 58.358 34.615 8.15 0.00 37.46 3.56
20 21 9.617523 AGAAATGTCATCATGATACACATACAA 57.382 29.630 23.39 5.20 37.46 2.41
24 25 9.788889 ACATAGAAATGTCATCATGATACACAT 57.211 29.630 19.85 19.85 42.92 3.21
25 26 9.048446 CACATAGAAATGTCATCATGATACACA 57.952 33.333 17.70 17.70 44.70 3.72
26 27 8.013947 GCACATAGAAATGTCATCATGATACAC 58.986 37.037 8.15 8.80 44.70 2.90
27 28 7.935210 AGCACATAGAAATGTCATCATGATACA 59.065 33.333 8.15 13.02 44.70 2.29
28 29 8.320396 AGCACATAGAAATGTCATCATGATAC 57.680 34.615 8.15 7.94 44.70 2.24
30 31 8.913487 TTAGCACATAGAAATGTCATCATGAT 57.087 30.769 1.18 1.18 44.70 2.45
31 32 8.735692 TTTAGCACATAGAAATGTCATCATGA 57.264 30.769 0.00 0.00 44.70 3.07
32 33 8.833493 TCTTTAGCACATAGAAATGTCATCATG 58.167 33.333 0.00 0.00 44.70 3.07
33 34 8.969260 TCTTTAGCACATAGAAATGTCATCAT 57.031 30.769 0.00 0.00 44.70 2.45
34 35 8.969260 ATCTTTAGCACATAGAAATGTCATCA 57.031 30.769 0.00 0.00 44.70 3.07
35 36 9.875675 GAATCTTTAGCACATAGAAATGTCATC 57.124 33.333 0.00 0.00 44.70 2.92
36 37 9.624373 AGAATCTTTAGCACATAGAAATGTCAT 57.376 29.630 0.00 0.00 44.70 3.06
37 38 9.453572 AAGAATCTTTAGCACATAGAAATGTCA 57.546 29.630 0.00 0.00 44.70 3.58
38 39 9.928236 GAAGAATCTTTAGCACATAGAAATGTC 57.072 33.333 0.00 0.00 44.70 3.06
39 40 9.678260 AGAAGAATCTTTAGCACATAGAAATGT 57.322 29.630 0.00 0.00 38.76 2.71
72 73 8.987890 GGCATATTTGTTTTGTATTTGAACAGT 58.012 29.630 0.00 0.00 35.04 3.55
73 74 8.986847 TGGCATATTTGTTTTGTATTTGAACAG 58.013 29.630 0.00 0.00 35.04 3.16
74 75 8.893219 TGGCATATTTGTTTTGTATTTGAACA 57.107 26.923 0.00 0.00 0.00 3.18
108 109 5.413833 ACACTCGCTACTGCTACTTTAAGTA 59.586 40.000 4.66 4.66 36.97 2.24
109 110 4.217983 ACACTCGCTACTGCTACTTTAAGT 59.782 41.667 2.32 2.32 36.97 2.24
110 111 4.734917 ACACTCGCTACTGCTACTTTAAG 58.265 43.478 0.00 0.00 36.97 1.85
111 112 4.778534 ACACTCGCTACTGCTACTTTAA 57.221 40.909 0.00 0.00 36.97 1.52
112 113 7.558161 TTATACACTCGCTACTGCTACTTTA 57.442 36.000 0.00 0.00 36.97 1.85
113 114 4.985538 ATACACTCGCTACTGCTACTTT 57.014 40.909 0.00 0.00 36.97 2.66
114 115 6.446781 TTTATACACTCGCTACTGCTACTT 57.553 37.500 0.00 0.00 36.97 2.24
115 116 6.095160 ACTTTTATACACTCGCTACTGCTACT 59.905 38.462 0.00 0.00 36.97 2.57
116 117 6.264088 ACTTTTATACACTCGCTACTGCTAC 58.736 40.000 0.00 0.00 36.97 3.58
117 118 6.446781 ACTTTTATACACTCGCTACTGCTA 57.553 37.500 0.00 0.00 36.97 3.49
118 119 5.326200 ACTTTTATACACTCGCTACTGCT 57.674 39.130 0.00 0.00 36.97 4.24
119 120 6.291690 GCTAACTTTTATACACTCGCTACTGC 60.292 42.308 0.00 0.00 0.00 4.40
120 121 6.750501 TGCTAACTTTTATACACTCGCTACTG 59.249 38.462 0.00 0.00 0.00 2.74
121 122 6.860080 TGCTAACTTTTATACACTCGCTACT 58.140 36.000 0.00 0.00 0.00 2.57
122 123 6.291690 GCTGCTAACTTTTATACACTCGCTAC 60.292 42.308 0.00 0.00 0.00 3.58
123 124 5.747197 GCTGCTAACTTTTATACACTCGCTA 59.253 40.000 0.00 0.00 0.00 4.26
124 125 4.567159 GCTGCTAACTTTTATACACTCGCT 59.433 41.667 0.00 0.00 0.00 4.93
125 126 4.328983 TGCTGCTAACTTTTATACACTCGC 59.671 41.667 0.00 0.00 0.00 5.03
126 127 5.500931 GCTGCTGCTAACTTTTATACACTCG 60.501 44.000 8.53 0.00 36.03 4.18
127 128 5.500931 CGCTGCTGCTAACTTTTATACACTC 60.501 44.000 14.03 0.00 36.97 3.51
128 129 4.330074 CGCTGCTGCTAACTTTTATACACT 59.670 41.667 14.03 0.00 36.97 3.55
129 130 4.578601 CGCTGCTGCTAACTTTTATACAC 58.421 43.478 14.03 0.00 36.97 2.90
130 131 3.063452 GCGCTGCTGCTAACTTTTATACA 59.937 43.478 14.03 0.00 36.97 2.29
131 132 3.546218 GGCGCTGCTGCTAACTTTTATAC 60.546 47.826 14.03 0.00 36.97 1.47
132 133 2.612212 GGCGCTGCTGCTAACTTTTATA 59.388 45.455 14.03 0.00 36.97 0.98
133 134 1.401905 GGCGCTGCTGCTAACTTTTAT 59.598 47.619 14.03 0.00 36.97 1.40
134 135 0.802494 GGCGCTGCTGCTAACTTTTA 59.198 50.000 14.03 0.00 36.97 1.52
135 136 1.581447 GGCGCTGCTGCTAACTTTT 59.419 52.632 14.03 0.00 36.97 2.27
136 137 2.680913 CGGCGCTGCTGCTAACTTT 61.681 57.895 14.03 0.00 36.97 2.66
137 138 3.121030 CGGCGCTGCTGCTAACTT 61.121 61.111 14.03 0.00 36.97 2.66
147 148 3.824117 TACTGCTATCGCGGCGCTG 62.824 63.158 30.54 22.35 46.69 5.18
148 149 3.544167 CTACTGCTATCGCGGCGCT 62.544 63.158 30.54 15.05 46.69 5.92
149 150 3.100191 CTACTGCTATCGCGGCGC 61.100 66.667 24.21 24.21 46.69 6.53
150 151 3.100191 GCTACTGCTATCGCGGCG 61.100 66.667 17.70 17.70 46.69 6.46
151 152 3.100191 CGCTACTGCTATCGCGGC 61.100 66.667 6.13 1.71 46.69 6.53
154 155 2.353607 ACGCGCTACTGCTATCGC 60.354 61.111 5.73 0.00 43.62 4.58
155 156 1.726322 GGACGCGCTACTGCTATCG 60.726 63.158 5.73 0.00 36.97 2.92
156 157 0.661780 CTGGACGCGCTACTGCTATC 60.662 60.000 5.73 0.00 36.97 2.08
157 158 1.360551 CTGGACGCGCTACTGCTAT 59.639 57.895 5.73 0.00 36.97 2.97
158 159 2.771639 CCTGGACGCGCTACTGCTA 61.772 63.158 5.73 0.00 36.97 3.49
159 160 4.135153 CCTGGACGCGCTACTGCT 62.135 66.667 5.73 0.00 36.97 4.24
161 162 3.932580 TTGCCTGGACGCGCTACTG 62.933 63.158 5.73 0.10 0.00 2.74
162 163 3.234630 TTTGCCTGGACGCGCTACT 62.235 57.895 5.73 0.00 0.00 2.57
163 164 2.740714 CTTTGCCTGGACGCGCTAC 61.741 63.158 5.73 0.00 0.00 3.58
164 165 2.434185 CTTTGCCTGGACGCGCTA 60.434 61.111 5.73 0.00 0.00 4.26
171 172 4.386951 TAGCGCGCTTTGCCTGGA 62.387 61.111 41.04 16.41 42.08 3.86
172 173 3.869272 CTAGCGCGCTTTGCCTGG 61.869 66.667 41.04 12.41 42.08 4.45
173 174 2.806856 CTCTAGCGCGCTTTGCCTG 61.807 63.158 41.04 20.85 42.08 4.85
174 175 2.510238 CTCTAGCGCGCTTTGCCT 60.510 61.111 41.04 17.14 42.08 4.75
175 176 4.229479 GCTCTAGCGCGCTTTGCC 62.229 66.667 41.04 21.20 42.08 4.52
194 195 3.980646 CAGAAGATCGCTACTGCTAGT 57.019 47.619 0.00 0.00 36.97 2.57
199 200 1.929836 GTTGGCAGAAGATCGCTACTG 59.070 52.381 0.00 0.00 0.00 2.74
200 201 1.550524 TGTTGGCAGAAGATCGCTACT 59.449 47.619 0.00 0.00 0.00 2.57
201 202 1.929836 CTGTTGGCAGAAGATCGCTAC 59.070 52.381 0.00 0.00 45.28 3.58
202 203 1.740380 GCTGTTGGCAGAAGATCGCTA 60.740 52.381 2.96 0.00 45.28 4.26
203 204 1.023513 GCTGTTGGCAGAAGATCGCT 61.024 55.000 2.96 0.00 45.28 4.93
204 205 1.427020 GCTGTTGGCAGAAGATCGC 59.573 57.895 2.96 0.00 45.28 4.58
205 206 1.712081 CGCTGTTGGCAGAAGATCG 59.288 57.895 2.96 0.00 45.28 3.69
206 207 1.023513 AGCGCTGTTGGCAGAAGATC 61.024 55.000 10.39 0.00 45.28 2.75
207 208 1.002868 AGCGCTGTTGGCAGAAGAT 60.003 52.632 10.39 0.00 45.28 2.40
208 209 1.962822 CAGCGCTGTTGGCAGAAGA 60.963 57.895 29.24 0.00 45.28 2.87
209 210 2.559840 CAGCGCTGTTGGCAGAAG 59.440 61.111 29.24 0.00 45.28 2.85
210 211 3.663176 GCAGCGCTGTTGGCAGAA 61.663 61.111 35.80 0.00 45.28 3.02
211 212 4.631247 AGCAGCGCTGTTGGCAGA 62.631 61.111 35.80 0.00 45.28 4.26
222 223 1.224069 ACACAAGTGTAGCAGCAGCG 61.224 55.000 3.64 0.00 42.90 5.18
223 224 1.795768 TACACAAGTGTAGCAGCAGC 58.204 50.000 8.88 0.00 44.42 5.25
231 232 2.670229 GCGCTACTGCTACACAAGTGTA 60.670 50.000 12.09 12.09 44.42 2.90
232 233 1.935300 GCGCTACTGCTACACAAGTGT 60.935 52.381 11.00 11.00 46.87 3.55
233 234 0.716108 GCGCTACTGCTACACAAGTG 59.284 55.000 0.00 0.00 36.97 3.16
234 235 0.389948 GGCGCTACTGCTACACAAGT 60.390 55.000 7.64 0.00 36.97 3.16
235 236 1.413767 CGGCGCTACTGCTACACAAG 61.414 60.000 7.64 0.00 36.97 3.16
236 237 1.445410 CGGCGCTACTGCTACACAA 60.445 57.895 7.64 0.00 36.97 3.33
237 238 2.180769 CGGCGCTACTGCTACACA 59.819 61.111 7.64 0.00 36.97 3.72
238 239 2.582498 CCGGCGCTACTGCTACAC 60.582 66.667 7.64 0.00 36.97 2.90
239 240 3.066190 ACCGGCGCTACTGCTACA 61.066 61.111 7.64 0.00 36.97 2.74
240 241 2.582498 CACCGGCGCTACTGCTAC 60.582 66.667 7.64 0.00 36.97 3.58
241 242 2.752640 TCACCGGCGCTACTGCTA 60.753 61.111 7.64 0.00 36.97 3.49
242 243 4.135153 CTCACCGGCGCTACTGCT 62.135 66.667 7.64 0.00 36.97 4.24
244 245 4.435436 TGCTCACCGGCGCTACTG 62.435 66.667 7.64 0.00 34.52 2.74
245 246 4.436998 GTGCTCACCGGCGCTACT 62.437 66.667 7.64 0.00 39.35 2.57
272 273 2.128035 GGCGCTACAGCTAACACATAG 58.872 52.381 7.64 0.00 39.32 2.23
273 274 1.754803 AGGCGCTACAGCTAACACATA 59.245 47.619 7.64 0.00 39.32 2.29
274 275 0.537188 AGGCGCTACAGCTAACACAT 59.463 50.000 7.64 0.00 39.32 3.21
275 276 0.320374 AAGGCGCTACAGCTAACACA 59.680 50.000 7.64 0.00 39.32 3.72
276 277 2.288961 TAAGGCGCTACAGCTAACAC 57.711 50.000 7.64 0.00 39.32 3.32
277 278 3.536956 AATAAGGCGCTACAGCTAACA 57.463 42.857 7.64 0.00 39.32 2.41
278 279 4.618965 ACTAATAAGGCGCTACAGCTAAC 58.381 43.478 7.64 0.00 39.32 2.34
279 280 4.931661 ACTAATAAGGCGCTACAGCTAA 57.068 40.909 7.64 0.00 39.32 3.09
280 281 4.082895 GCTACTAATAAGGCGCTACAGCTA 60.083 45.833 7.64 0.00 39.32 3.32
281 282 3.305471 GCTACTAATAAGGCGCTACAGCT 60.305 47.826 7.64 0.00 39.32 4.24
282 283 2.987821 GCTACTAATAAGGCGCTACAGC 59.012 50.000 7.64 0.00 37.78 4.40
283 284 3.235195 CGCTACTAATAAGGCGCTACAG 58.765 50.000 7.64 0.00 41.08 2.74
284 285 3.278367 CGCTACTAATAAGGCGCTACA 57.722 47.619 7.64 0.00 41.08 2.74
290 291 4.142204 GGGGATAGACGCTACTAATAAGGC 60.142 50.000 0.00 0.00 0.00 4.35
291 292 5.014858 TGGGGATAGACGCTACTAATAAGG 58.985 45.833 0.00 0.00 0.00 2.69
292 293 5.391736 CGTGGGGATAGACGCTACTAATAAG 60.392 48.000 0.00 0.00 39.88 1.73
293 294 4.456911 CGTGGGGATAGACGCTACTAATAA 59.543 45.833 0.00 0.00 39.88 1.40
294 295 4.005650 CGTGGGGATAGACGCTACTAATA 58.994 47.826 0.00 0.00 39.88 0.98
295 296 2.818432 CGTGGGGATAGACGCTACTAAT 59.182 50.000 0.00 0.00 39.88 1.73
296 297 2.224606 CGTGGGGATAGACGCTACTAA 58.775 52.381 0.00 0.00 39.88 2.24
297 298 1.888215 CGTGGGGATAGACGCTACTA 58.112 55.000 0.00 0.00 39.88 1.82
298 299 2.716814 CGTGGGGATAGACGCTACT 58.283 57.895 0.00 0.00 39.88 2.57
303 304 0.311165 CAGTAGCGTGGGGATAGACG 59.689 60.000 0.00 0.00 38.63 4.18
304 305 1.688772 TCAGTAGCGTGGGGATAGAC 58.311 55.000 0.00 0.00 0.00 2.59
305 306 2.677542 ATCAGTAGCGTGGGGATAGA 57.322 50.000 0.00 0.00 0.00 1.98
306 307 3.154710 TGTATCAGTAGCGTGGGGATAG 58.845 50.000 0.00 0.00 0.00 2.08
307 308 3.232720 TGTATCAGTAGCGTGGGGATA 57.767 47.619 0.00 0.00 0.00 2.59
308 309 2.082140 TGTATCAGTAGCGTGGGGAT 57.918 50.000 0.00 0.00 0.00 3.85
309 310 1.961394 GATGTATCAGTAGCGTGGGGA 59.039 52.381 0.00 0.00 0.00 4.81
310 311 1.964223 AGATGTATCAGTAGCGTGGGG 59.036 52.381 0.00 0.00 0.00 4.96
311 312 4.848562 TTAGATGTATCAGTAGCGTGGG 57.151 45.455 0.00 0.00 0.00 4.61
312 313 5.462398 GGTTTTAGATGTATCAGTAGCGTGG 59.538 44.000 0.00 0.00 0.00 4.94
313 314 5.462398 GGGTTTTAGATGTATCAGTAGCGTG 59.538 44.000 0.00 0.00 0.00 5.34
314 315 5.598769 GGGTTTTAGATGTATCAGTAGCGT 58.401 41.667 0.00 0.00 0.00 5.07
315 316 4.680110 CGGGTTTTAGATGTATCAGTAGCG 59.320 45.833 0.00 0.00 0.00 4.26
316 317 4.448060 GCGGGTTTTAGATGTATCAGTAGC 59.552 45.833 0.00 0.00 0.00 3.58
317 318 4.680110 CGCGGGTTTTAGATGTATCAGTAG 59.320 45.833 0.00 0.00 0.00 2.57
318 319 4.613944 CGCGGGTTTTAGATGTATCAGTA 58.386 43.478 0.00 0.00 0.00 2.74
319 320 3.454375 CGCGGGTTTTAGATGTATCAGT 58.546 45.455 0.00 0.00 0.00 3.41
320 321 2.221055 GCGCGGGTTTTAGATGTATCAG 59.779 50.000 8.83 0.00 0.00 2.90
321 322 2.159014 AGCGCGGGTTTTAGATGTATCA 60.159 45.455 8.83 0.00 0.00 2.15
322 323 2.221055 CAGCGCGGGTTTTAGATGTATC 59.779 50.000 8.83 0.00 0.00 2.24
323 324 2.210116 CAGCGCGGGTTTTAGATGTAT 58.790 47.619 8.83 0.00 0.00 2.29
324 325 1.647346 CAGCGCGGGTTTTAGATGTA 58.353 50.000 8.83 0.00 0.00 2.29
325 326 1.644786 GCAGCGCGGGTTTTAGATGT 61.645 55.000 8.83 0.00 0.00 3.06
326 327 1.062525 GCAGCGCGGGTTTTAGATG 59.937 57.895 8.83 0.00 0.00 2.90
327 328 1.078426 AGCAGCGCGGGTTTTAGAT 60.078 52.632 8.83 0.00 0.00 1.98
328 329 2.032634 CAGCAGCGCGGGTTTTAGA 61.033 57.895 10.16 0.00 0.00 2.10
329 330 2.480555 CAGCAGCGCGGGTTTTAG 59.519 61.111 10.16 0.00 0.00 1.85
330 331 3.732892 GCAGCAGCGCGGGTTTTA 61.733 61.111 10.16 0.00 0.00 1.52
338 339 2.589636 GAAAAGGCTAGCAGCAGCGC 62.590 60.000 18.24 0.00 44.75 5.92
339 340 1.427020 GAAAAGGCTAGCAGCAGCG 59.573 57.895 18.24 0.00 44.75 5.18
340 341 1.661498 GGGAAAAGGCTAGCAGCAGC 61.661 60.000 18.24 7.98 44.75 5.25
341 342 0.034670 AGGGAAAAGGCTAGCAGCAG 60.035 55.000 18.24 0.00 44.75 4.24
342 343 1.285280 TAGGGAAAAGGCTAGCAGCA 58.715 50.000 18.24 0.00 44.75 4.41
343 344 2.420058 TTAGGGAAAAGGCTAGCAGC 57.580 50.000 18.24 0.00 41.46 5.25
344 345 5.059833 CACTATTAGGGAAAAGGCTAGCAG 58.940 45.833 18.24 2.61 0.00 4.24
345 346 4.719773 TCACTATTAGGGAAAAGGCTAGCA 59.280 41.667 18.24 0.00 0.00 3.49
346 347 5.070580 TCTCACTATTAGGGAAAAGGCTAGC 59.929 44.000 6.04 6.04 0.00 3.42
347 348 6.325286 AGTCTCACTATTAGGGAAAAGGCTAG 59.675 42.308 0.00 0.00 0.00 3.42
348 349 6.098409 CAGTCTCACTATTAGGGAAAAGGCTA 59.902 42.308 0.00 0.00 0.00 3.93
349 350 5.033522 AGTCTCACTATTAGGGAAAAGGCT 58.966 41.667 0.00 0.00 0.00 4.58
350 351 5.104900 TCAGTCTCACTATTAGGGAAAAGGC 60.105 44.000 0.00 0.00 0.00 4.35
351 352 6.546428 TCAGTCTCACTATTAGGGAAAAGG 57.454 41.667 0.00 0.00 0.00 3.11
352 353 6.045955 GCTCAGTCTCACTATTAGGGAAAAG 58.954 44.000 0.00 0.00 0.00 2.27
353 354 5.721960 AGCTCAGTCTCACTATTAGGGAAAA 59.278 40.000 0.00 0.00 0.00 2.29
354 355 5.273208 AGCTCAGTCTCACTATTAGGGAAA 58.727 41.667 0.00 0.00 0.00 3.13
355 356 4.873010 AGCTCAGTCTCACTATTAGGGAA 58.127 43.478 0.00 0.00 0.00 3.97
356 357 4.528076 AGCTCAGTCTCACTATTAGGGA 57.472 45.455 0.00 0.00 0.00 4.20
357 358 5.626142 TCTAGCTCAGTCTCACTATTAGGG 58.374 45.833 0.00 0.00 0.00 3.53
358 359 7.067615 TGTTTCTAGCTCAGTCTCACTATTAGG 59.932 40.741 0.00 0.00 0.00 2.69
359 360 7.913297 GTGTTTCTAGCTCAGTCTCACTATTAG 59.087 40.741 0.00 0.00 0.00 1.73
360 361 7.148052 GGTGTTTCTAGCTCAGTCTCACTATTA 60.148 40.741 0.00 0.00 0.00 0.98
361 362 6.350612 GGTGTTTCTAGCTCAGTCTCACTATT 60.351 42.308 0.00 0.00 0.00 1.73
362 363 5.126384 GGTGTTTCTAGCTCAGTCTCACTAT 59.874 44.000 0.00 0.00 0.00 2.12
363 364 4.459685 GGTGTTTCTAGCTCAGTCTCACTA 59.540 45.833 0.00 0.00 0.00 2.74
364 365 3.257127 GGTGTTTCTAGCTCAGTCTCACT 59.743 47.826 0.00 0.00 0.00 3.41
365 366 3.580731 GGTGTTTCTAGCTCAGTCTCAC 58.419 50.000 0.00 0.00 0.00 3.51
366 367 2.229062 CGGTGTTTCTAGCTCAGTCTCA 59.771 50.000 0.00 0.00 0.00 3.27
367 368 2.416162 CCGGTGTTTCTAGCTCAGTCTC 60.416 54.545 0.00 0.00 0.00 3.36
396 397 3.988379 AATTTCTGAGTTCTTGCGCAA 57.012 38.095 23.48 23.48 0.00 4.85
397 398 4.065088 AGTAATTTCTGAGTTCTTGCGCA 58.935 39.130 5.66 5.66 0.00 6.09
403 404 5.244178 ACGGTGAGAGTAATTTCTGAGTTCT 59.756 40.000 0.00 0.00 0.00 3.01
406 407 4.523173 TGACGGTGAGAGTAATTTCTGAGT 59.477 41.667 0.00 0.00 0.00 3.41
416 417 5.533903 AGACTAAAAAGTGACGGTGAGAGTA 59.466 40.000 0.00 0.00 0.00 2.59
417 418 4.341520 AGACTAAAAAGTGACGGTGAGAGT 59.658 41.667 0.00 0.00 0.00 3.24
418 419 4.681942 CAGACTAAAAAGTGACGGTGAGAG 59.318 45.833 0.00 0.00 0.00 3.20
419 420 4.617959 CAGACTAAAAAGTGACGGTGAGA 58.382 43.478 0.00 0.00 0.00 3.27
420 421 3.184581 GCAGACTAAAAAGTGACGGTGAG 59.815 47.826 0.00 0.00 0.00 3.51
421 422 3.128349 GCAGACTAAAAAGTGACGGTGA 58.872 45.455 0.00 0.00 0.00 4.02
422 423 2.869801 TGCAGACTAAAAAGTGACGGTG 59.130 45.455 0.00 0.00 0.00 4.94
423 424 3.188159 TGCAGACTAAAAAGTGACGGT 57.812 42.857 0.00 0.00 0.00 4.83
424 425 7.491372 TCTTATATGCAGACTAAAAAGTGACGG 59.509 37.037 0.00 0.00 0.00 4.79
425 426 8.407457 TCTTATATGCAGACTAAAAAGTGACG 57.593 34.615 0.00 0.00 0.00 4.35
435 436 9.755804 CTCTGAACAAATCTTATATGCAGACTA 57.244 33.333 0.00 0.00 0.00 2.59
436 437 8.263640 ACTCTGAACAAATCTTATATGCAGACT 58.736 33.333 0.00 0.00 0.00 3.24
437 438 8.430801 ACTCTGAACAAATCTTATATGCAGAC 57.569 34.615 0.00 0.00 0.00 3.51
438 439 8.260114 TGACTCTGAACAAATCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
439 440 8.429493 TGACTCTGAACAAATCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
440 441 8.791327 TTGACTCTGAACAAATCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
441 442 9.495754 GTTTGACTCTGAACAAATCTTATATGC 57.504 33.333 11.02 0.00 38.09 3.14
445 446 9.956720 CAAAGTTTGACTCTGAACAAATCTTAT 57.043 29.630 10.19 6.85 38.09 1.73
446 447 8.956426 ACAAAGTTTGACTCTGAACAAATCTTA 58.044 29.630 22.23 0.00 38.09 2.10
447 448 7.830739 ACAAAGTTTGACTCTGAACAAATCTT 58.169 30.769 22.23 11.99 38.09 2.40
448 449 7.396540 ACAAAGTTTGACTCTGAACAAATCT 57.603 32.000 22.23 8.43 38.09 2.40
449 450 9.567848 TTAACAAAGTTTGACTCTGAACAAATC 57.432 29.630 22.23 6.98 38.09 2.17
450 451 9.353999 GTTAACAAAGTTTGACTCTGAACAAAT 57.646 29.630 22.23 0.00 38.09 2.32
451 452 8.573035 AGTTAACAAAGTTTGACTCTGAACAAA 58.427 29.630 22.23 5.86 34.33 2.83
452 453 8.106247 AGTTAACAAAGTTTGACTCTGAACAA 57.894 30.769 22.23 0.41 0.00 2.83
453 454 7.681939 AGTTAACAAAGTTTGACTCTGAACA 57.318 32.000 22.23 0.00 0.00 3.18
454 455 8.850452 CAAAGTTAACAAAGTTTGACTCTGAAC 58.150 33.333 22.23 14.01 42.68 3.18
455 456 8.788806 TCAAAGTTAACAAAGTTTGACTCTGAA 58.211 29.630 22.23 4.07 43.36 3.02
456 457 8.330466 TCAAAGTTAACAAAGTTTGACTCTGA 57.670 30.769 22.23 13.76 43.36 3.27
518 519 9.223099 TGATGCATCTAACGATATTGATTTCAT 57.777 29.630 26.32 0.00 0.00 2.57
519 520 8.606040 TGATGCATCTAACGATATTGATTTCA 57.394 30.769 26.32 0.00 0.00 2.69
520 521 9.486857 CATGATGCATCTAACGATATTGATTTC 57.513 33.333 26.32 0.00 0.00 2.17
521 522 9.223099 TCATGATGCATCTAACGATATTGATTT 57.777 29.630 26.32 0.00 0.00 2.17
522 523 8.782339 TCATGATGCATCTAACGATATTGATT 57.218 30.769 26.32 0.00 0.00 2.57
523 524 8.782339 TTCATGATGCATCTAACGATATTGAT 57.218 30.769 26.32 5.19 0.00 2.57
524 525 8.606040 TTTCATGATGCATCTAACGATATTGA 57.394 30.769 26.32 12.12 0.00 2.57
529 530 9.060347 ACTTTATTTCATGATGCATCTAACGAT 57.940 29.630 26.32 16.47 0.00 3.73
530 531 8.437360 ACTTTATTTCATGATGCATCTAACGA 57.563 30.769 26.32 14.40 0.00 3.85
531 532 9.507280 AAACTTTATTTCATGATGCATCTAACG 57.493 29.630 26.32 14.81 0.00 3.18
537 538 9.754382 GGTATGAAACTTTATTTCATGATGCAT 57.246 29.630 20.05 0.00 45.55 3.96
538 539 8.747471 TGGTATGAAACTTTATTTCATGATGCA 58.253 29.630 20.05 0.00 45.55 3.96
539 540 9.754382 ATGGTATGAAACTTTATTTCATGATGC 57.246 29.630 20.05 10.33 45.55 3.91
555 556 9.582431 GCGATACTAAAGCTATATGGTATGAAA 57.418 33.333 7.52 0.00 0.00 2.69
556 557 8.745590 TGCGATACTAAAGCTATATGGTATGAA 58.254 33.333 7.52 0.00 0.00 2.57
557 558 8.288689 TGCGATACTAAAGCTATATGGTATGA 57.711 34.615 7.52 0.00 0.00 2.15
558 559 8.406297 TCTGCGATACTAAAGCTATATGGTATG 58.594 37.037 7.52 3.50 0.00 2.39
559 560 8.521170 TCTGCGATACTAAAGCTATATGGTAT 57.479 34.615 0.00 0.00 0.00 2.73
560 561 7.933215 TCTGCGATACTAAAGCTATATGGTA 57.067 36.000 0.00 0.00 0.00 3.25
561 562 6.835819 TCTGCGATACTAAAGCTATATGGT 57.164 37.500 0.00 0.00 0.00 3.55
562 563 8.709386 AAATCTGCGATACTAAAGCTATATGG 57.291 34.615 0.00 0.00 0.00 2.74
565 566 9.982651 AGAAAAATCTGCGATACTAAAGCTATA 57.017 29.630 0.00 0.00 0.00 1.31
566 567 8.894768 AGAAAAATCTGCGATACTAAAGCTAT 57.105 30.769 0.00 0.00 0.00 2.97
567 568 9.245962 GTAGAAAAATCTGCGATACTAAAGCTA 57.754 33.333 0.00 0.00 0.00 3.32
568 569 7.764443 TGTAGAAAAATCTGCGATACTAAAGCT 59.236 33.333 0.00 0.00 0.00 3.74
569 570 7.906160 TGTAGAAAAATCTGCGATACTAAAGC 58.094 34.615 0.00 0.00 0.00 3.51
572 573 9.431887 ACTTTGTAGAAAAATCTGCGATACTAA 57.568 29.630 0.00 0.00 0.00 2.24
573 574 8.997621 ACTTTGTAGAAAAATCTGCGATACTA 57.002 30.769 0.00 0.00 0.00 1.82
574 575 7.907214 ACTTTGTAGAAAAATCTGCGATACT 57.093 32.000 0.00 0.00 0.00 2.12
575 576 7.481798 CCAACTTTGTAGAAAAATCTGCGATAC 59.518 37.037 0.00 0.00 0.00 2.24
576 577 7.174253 ACCAACTTTGTAGAAAAATCTGCGATA 59.826 33.333 0.00 0.00 0.00 2.92
577 578 6.016276 ACCAACTTTGTAGAAAAATCTGCGAT 60.016 34.615 0.00 0.00 0.00 4.58
578 579 5.298276 ACCAACTTTGTAGAAAAATCTGCGA 59.702 36.000 0.00 0.00 0.00 5.10
579 580 5.519722 ACCAACTTTGTAGAAAAATCTGCG 58.480 37.500 0.00 0.00 0.00 5.18
580 581 6.503524 TGACCAACTTTGTAGAAAAATCTGC 58.496 36.000 0.00 0.00 0.00 4.26
581 582 8.925161 TTTGACCAACTTTGTAGAAAAATCTG 57.075 30.769 0.00 0.00 0.00 2.90
628 629 9.769093 CCGTTTCTTTTTAGTCTACATATTTGG 57.231 33.333 0.00 0.00 0.00 3.28
631 632 9.379791 CCTCCGTTTCTTTTTAGTCTACATATT 57.620 33.333 0.00 0.00 0.00 1.28
632 633 8.755977 TCCTCCGTTTCTTTTTAGTCTACATAT 58.244 33.333 0.00 0.00 0.00 1.78
633 634 8.125978 TCCTCCGTTTCTTTTTAGTCTACATA 57.874 34.615 0.00 0.00 0.00 2.29
634 635 7.001099 TCCTCCGTTTCTTTTTAGTCTACAT 57.999 36.000 0.00 0.00 0.00 2.29
635 636 6.409524 TCCTCCGTTTCTTTTTAGTCTACA 57.590 37.500 0.00 0.00 0.00 2.74
636 637 7.902387 ATTCCTCCGTTTCTTTTTAGTCTAC 57.098 36.000 0.00 0.00 0.00 2.59
637 638 8.810041 AGTATTCCTCCGTTTCTTTTTAGTCTA 58.190 33.333 0.00 0.00 0.00 2.59
638 639 7.677892 AGTATTCCTCCGTTTCTTTTTAGTCT 58.322 34.615 0.00 0.00 0.00 3.24
639 640 7.902387 AGTATTCCTCCGTTTCTTTTTAGTC 57.098 36.000 0.00 0.00 0.00 2.59
640 641 9.783081 TTAAGTATTCCTCCGTTTCTTTTTAGT 57.217 29.630 0.00 0.00 0.00 2.24
643 644 8.913487 TCTTAAGTATTCCTCCGTTTCTTTTT 57.087 30.769 1.63 0.00 0.00 1.94
644 645 8.155510 ACTCTTAAGTATTCCTCCGTTTCTTTT 58.844 33.333 1.63 0.00 32.59 2.27
645 646 7.603024 CACTCTTAAGTATTCCTCCGTTTCTTT 59.397 37.037 1.63 0.00 33.25 2.52
646 647 7.039223 TCACTCTTAAGTATTCCTCCGTTTCTT 60.039 37.037 1.63 0.00 33.25 2.52
647 648 6.436532 TCACTCTTAAGTATTCCTCCGTTTCT 59.563 38.462 1.63 0.00 33.25 2.52
648 649 6.530887 GTCACTCTTAAGTATTCCTCCGTTTC 59.469 42.308 1.63 0.00 33.25 2.78
649 650 6.396450 GTCACTCTTAAGTATTCCTCCGTTT 58.604 40.000 1.63 0.00 33.25 3.60
650 651 5.105432 GGTCACTCTTAAGTATTCCTCCGTT 60.105 44.000 1.63 0.00 33.25 4.44
651 652 4.401837 GGTCACTCTTAAGTATTCCTCCGT 59.598 45.833 1.63 0.00 33.25 4.69
652 653 4.497674 CGGTCACTCTTAAGTATTCCTCCG 60.498 50.000 1.63 6.21 33.25 4.63
653 654 4.643784 TCGGTCACTCTTAAGTATTCCTCC 59.356 45.833 1.63 0.00 33.25 4.30
654 655 5.357596 ACTCGGTCACTCTTAAGTATTCCTC 59.642 44.000 1.63 0.00 33.25 3.71
655 656 5.262804 ACTCGGTCACTCTTAAGTATTCCT 58.737 41.667 1.63 0.00 33.25 3.36
656 657 5.357596 AGACTCGGTCACTCTTAAGTATTCC 59.642 44.000 1.63 0.27 34.60 3.01
657 658 6.439675 AGACTCGGTCACTCTTAAGTATTC 57.560 41.667 1.63 0.00 34.60 1.75
658 659 6.350277 CCAAGACTCGGTCACTCTTAAGTATT 60.350 42.308 1.63 0.00 34.60 1.89
659 660 5.125739 CCAAGACTCGGTCACTCTTAAGTAT 59.874 44.000 1.63 0.00 34.60 2.12
698 699 0.393077 AGTCCAGTTCCTTGACACGG 59.607 55.000 0.00 0.00 29.90 4.94
699 700 1.784525 GAGTCCAGTTCCTTGACACG 58.215 55.000 0.00 0.00 29.90 4.49
719 880 1.340405 ACCTTGACCAGCATGATGGAC 60.340 52.381 35.60 28.94 43.57 4.02
720 881 0.994247 ACCTTGACCAGCATGATGGA 59.006 50.000 35.60 12.48 43.57 3.41
759 924 4.403734 TGTGGAGACCAAGGTTATTTTCC 58.596 43.478 0.00 0.00 34.18 3.13
783 948 3.435105 GTGTCAGTTTTGATTGGCACA 57.565 42.857 4.52 0.00 46.35 4.57
798 963 0.464036 AGTTTCTGCTCACCGTGTCA 59.536 50.000 0.00 0.00 0.00 3.58
799 964 1.527311 GAAGTTTCTGCTCACCGTGTC 59.473 52.381 0.00 0.00 0.00 3.67
800 965 1.583054 GAAGTTTCTGCTCACCGTGT 58.417 50.000 0.00 0.00 0.00 4.49
801 966 0.868406 GGAAGTTTCTGCTCACCGTG 59.132 55.000 0.00 0.00 0.00 4.94
802 967 0.759346 AGGAAGTTTCTGCTCACCGT 59.241 50.000 0.00 0.00 0.00 4.83
803 968 1.270305 TGAGGAAGTTTCTGCTCACCG 60.270 52.381 0.00 0.00 0.00 4.94
804 969 2.550830 TGAGGAAGTTTCTGCTCACC 57.449 50.000 0.00 0.00 0.00 4.02
806 971 3.867600 GCTGATGAGGAAGTTTCTGCTCA 60.868 47.826 0.00 0.00 32.60 4.26
823 1004 2.037901 ACATCACATCGGAGAGCTGAT 58.962 47.619 0.00 0.00 43.63 2.90
827 1008 0.460811 TGCACATCACATCGGAGAGC 60.461 55.000 0.00 0.00 43.63 4.09
846 1027 1.860676 TGAGCAGTTAAACGTCGCTT 58.139 45.000 0.00 0.00 31.86 4.68
869 1050 1.431496 CTTTCAGGCCGCCAATTTTG 58.569 50.000 13.15 0.09 0.00 2.44
874 1059 1.901464 GAACCTTTCAGGCCGCCAA 60.901 57.895 13.15 0.00 39.63 4.52
877 1062 1.285950 GTTGAACCTTTCAGGCCGC 59.714 57.895 0.00 0.00 39.63 6.53
906 1091 0.458669 GCATCCATTTGTCAGGGCAG 59.541 55.000 0.00 0.00 0.00 4.85
1047 1248 2.828095 AGTGCCTGTGCGTGCAAA 60.828 55.556 0.00 0.00 39.57 3.68
1164 1365 2.360726 TAGACAGAGGCGTCGGCA 60.361 61.111 21.79 0.00 42.47 5.69
1185 1386 2.739671 TCGAACGAGACGGCGAGA 60.740 61.111 16.62 0.00 34.29 4.04
1437 1650 2.187946 GAGGGCAGGATGGTGTCG 59.812 66.667 0.00 0.00 35.86 4.35
1540 1753 3.915437 AAACCTTAAGTTGCCATCACG 57.085 42.857 0.97 0.00 39.19 4.35
1589 1802 0.881796 GCGGAAAAGGGAGGAAACAG 59.118 55.000 0.00 0.00 0.00 3.16
1594 1807 1.874129 TCATAGCGGAAAAGGGAGGA 58.126 50.000 0.00 0.00 0.00 3.71
1633 1846 2.305928 TGAACCATTTCCACCAGTGTG 58.694 47.619 0.00 0.00 42.39 3.82
1757 1970 3.425713 CATCAAGTGTGGCGCGCT 61.426 61.111 32.29 8.58 40.11 5.92
1823 2036 1.691976 ACTCCGTGTTCAATCCACTGA 59.308 47.619 0.00 0.00 0.00 3.41
1858 2071 3.315418 GACAGAAGTTTCGTGGGAGTAC 58.685 50.000 0.00 0.00 0.00 2.73
1890 2103 1.896465 GCACCACTTCCAGTCTCTACT 59.104 52.381 0.00 0.00 35.91 2.57
1940 2153 2.098117 ACACTCTTGCTTGTGTTGAAGC 59.902 45.455 0.00 0.00 43.88 3.86
1941 2154 3.488047 CCACACTCTTGCTTGTGTTGAAG 60.488 47.826 0.00 0.00 43.88 3.02
1942 2155 2.423185 CCACACTCTTGCTTGTGTTGAA 59.577 45.455 0.00 0.00 43.88 2.69
1943 2156 2.016318 CCACACTCTTGCTTGTGTTGA 58.984 47.619 0.00 0.00 43.88 3.18
1944 2157 2.016318 TCCACACTCTTGCTTGTGTTG 58.984 47.619 0.00 0.00 43.88 3.33
1952 2165 2.225019 CACTCACATTCCACACTCTTGC 59.775 50.000 0.00 0.00 0.00 4.01
2051 2264 6.753180 TGAGTAGATTCAGTATCATCCAAGC 58.247 40.000 0.00 0.00 35.59 4.01
2077 2290 7.288810 TGTTCATTGGAAGTAGCTTGAAATT 57.711 32.000 0.00 0.00 32.62 1.82
2079 2292 6.707440 TTGTTCATTGGAAGTAGCTTGAAA 57.293 33.333 0.00 0.00 32.62 2.69
2266 2479 7.315890 GGAACTTTGATAAAAACTGATCCCAG 58.684 38.462 0.00 0.00 45.76 4.45
2286 2499 4.014273 AGGAATATCAGTCCTGGGAACT 57.986 45.455 0.00 0.00 44.14 3.01
2318 2531 3.393800 CATCTATTGGAGTTACTGGCCG 58.606 50.000 0.00 0.00 0.00 6.13
2336 2549 6.765512 CCAATACCTCTTCTCTTTTCTCCATC 59.234 42.308 0.00 0.00 0.00 3.51
2434 2665 3.443925 GGCTGGCTTCTTTCGGCC 61.444 66.667 0.00 0.00 46.54 6.13
2436 2667 2.034066 TGGGCTGGCTTCTTTCGG 59.966 61.111 0.00 0.00 0.00 4.30
2581 2812 3.341823 CAGTCCCAAACTCATCTTCCAG 58.658 50.000 0.00 0.00 35.45 3.86
2712 2943 2.136298 TTCCTTGTGTGCAGAAACCA 57.864 45.000 0.00 0.00 0.00 3.67
2722 2953 3.137360 AGAAGCCTCTCTTTTCCTTGTGT 59.863 43.478 0.00 0.00 34.56 3.72
2725 2956 3.080319 CCAGAAGCCTCTCTTTTCCTTG 58.920 50.000 0.00 0.00 34.56 3.61
2765 2996 1.604278 GGAATCCATTAAGCGAGCCAC 59.396 52.381 0.00 0.00 0.00 5.01
2802 3033 2.626780 GCGAAGGTTCCAGGTTGGC 61.627 63.158 0.00 0.00 37.47 4.52
2886 3117 3.706086 GGGGCTTTATGTCACAATGGATT 59.294 43.478 0.00 0.00 0.00 3.01
3030 3261 1.394618 TGTTTTTGAACCACTCGGGG 58.605 50.000 0.00 0.00 42.91 5.73
3072 3303 6.071616 GCAAGATCACCCCAAAACTATAAACA 60.072 38.462 0.00 0.00 0.00 2.83
3073 3304 6.152831 AGCAAGATCACCCCAAAACTATAAAC 59.847 38.462 0.00 0.00 0.00 2.01
3099 3330 2.138320 CGTCTGCAACACACAATCTCT 58.862 47.619 0.00 0.00 0.00 3.10
3131 3362 1.202440 GCTCCTCATCAGCTGTCTCTG 60.202 57.143 14.67 7.70 33.75 3.35
3186 3417 0.689623 AGTCAAGCCTCCCACTTCTG 59.310 55.000 0.00 0.00 0.00 3.02
3211 3442 1.065199 TGCCTCATCATCACCCTTGAC 60.065 52.381 0.00 0.00 33.38 3.18
3225 3456 8.055181 ACCTTCTTTATATTGAAGATTGCCTCA 58.945 33.333 13.57 0.00 41.38 3.86
3288 3519 1.377725 CCGCATTGTTGGCTCCTCT 60.378 57.895 0.00 0.00 0.00 3.69
3311 3542 1.875514 TCTGTGTCACTTTCAGCATGC 59.124 47.619 10.51 10.51 34.76 4.06
3348 3579 2.944390 GGGGGTGTGGGGATTGGA 60.944 66.667 0.00 0.00 0.00 3.53
3349 3580 2.946650 AGGGGGTGTGGGGATTGG 60.947 66.667 0.00 0.00 0.00 3.16
3363 3594 4.450305 AATGAAGGAAGATGGATCAGGG 57.550 45.455 0.00 0.00 0.00 4.45
3412 3643 8.812147 TCACACCGCAGAACTTATATATTTAG 57.188 34.615 0.00 0.00 0.00 1.85
3418 3649 7.985184 TCTTATTTCACACCGCAGAACTTATAT 59.015 33.333 0.00 0.00 0.00 0.86
3426 3657 3.678056 ACTCTTATTTCACACCGCAGA 57.322 42.857 0.00 0.00 0.00 4.26
3427 3658 7.307396 CCAATATACTCTTATTTCACACCGCAG 60.307 40.741 0.00 0.00 0.00 5.18
3431 3662 9.561069 ACATCCAATATACTCTTATTTCACACC 57.439 33.333 0.00 0.00 0.00 4.16
3455 3686 4.310357 TCGTTTGCTGTAGTCAAGTACA 57.690 40.909 0.00 0.00 0.00 2.90
3456 3687 6.939551 TTATCGTTTGCTGTAGTCAAGTAC 57.060 37.500 0.00 0.00 0.00 2.73
3457 3688 9.079833 GTATTTATCGTTTGCTGTAGTCAAGTA 57.920 33.333 0.00 0.00 0.00 2.24
3458 3689 7.201410 CGTATTTATCGTTTGCTGTAGTCAAGT 60.201 37.037 0.00 0.00 0.00 3.16
3459 3690 7.008901 TCGTATTTATCGTTTGCTGTAGTCAAG 59.991 37.037 0.00 0.00 0.00 3.02
3460 3691 6.807720 TCGTATTTATCGTTTGCTGTAGTCAA 59.192 34.615 0.00 0.00 0.00 3.18
3461 3692 6.324042 TCGTATTTATCGTTTGCTGTAGTCA 58.676 36.000 0.00 0.00 0.00 3.41
3462 3693 6.471519 ACTCGTATTTATCGTTTGCTGTAGTC 59.528 38.462 0.00 0.00 0.00 2.59
3463 3694 6.252869 CACTCGTATTTATCGTTTGCTGTAGT 59.747 38.462 0.00 0.00 0.00 2.73
3468 3699 6.040247 TCATCACTCGTATTTATCGTTTGCT 58.960 36.000 0.00 0.00 0.00 3.91
3483 3714 5.808042 ACATTTGAAGGAATCATCACTCG 57.192 39.130 0.00 0.00 38.03 4.18
3499 3730 6.400568 TCCTACTTCCGTTTACCTACATTTG 58.599 40.000 0.00 0.00 0.00 2.32
3507 3738 5.936372 ACATTTCTTCCTACTTCCGTTTACC 59.064 40.000 0.00 0.00 0.00 2.85
3513 3744 5.116180 TGCATACATTTCTTCCTACTTCCG 58.884 41.667 0.00 0.00 0.00 4.30
3578 3828 4.941263 ACCGCACATAAACAGTACATGAAT 59.059 37.500 0.00 0.00 0.00 2.57
3589 3839 2.158841 CACTGTGGTACCGCACATAAAC 59.841 50.000 24.25 5.92 32.59 2.01
3599 3849 3.887621 TCATAGCTTCACTGTGGTACC 57.112 47.619 4.43 4.43 38.03 3.34
3615 3865 7.025485 TGATTCGCAAAGCAATACATTCATA 57.975 32.000 0.00 0.00 0.00 2.15
3625 3875 1.600164 GCACACTGATTCGCAAAGCAA 60.600 47.619 0.00 0.00 28.79 3.91
3633 3883 4.985413 ACCAAAATATGCACACTGATTCG 58.015 39.130 0.00 0.00 0.00 3.34
3667 3917 3.118000 TGCATCTTCCAGCTTGATGATCT 60.118 43.478 11.87 0.00 39.72 2.75
3668 3918 3.211865 TGCATCTTCCAGCTTGATGATC 58.788 45.455 11.87 8.68 39.72 2.92
3677 3931 1.135575 CGTTTCCTTGCATCTTCCAGC 60.136 52.381 0.00 0.00 0.00 4.85
3697 3951 1.379527 CGTTGATTCCTAACCAGCCC 58.620 55.000 0.00 0.00 0.00 5.19
3711 3980 7.574217 GCTTAAATCATTGTTCTTACCCGTTGA 60.574 37.037 0.00 0.00 0.00 3.18
3714 3983 5.163794 CGCTTAAATCATTGTTCTTACCCGT 60.164 40.000 0.00 0.00 0.00 5.28
3742 4066 4.047822 GACATCTCTAGCATTTCAGTCGG 58.952 47.826 0.00 0.00 0.00 4.79
3785 4109 5.765182 GCTGCTAGTTGTACAAATGGGATAT 59.235 40.000 18.30 0.00 0.00 1.63
3817 4142 3.605922 CGCTCGCTTGTAAAACAACATGA 60.606 43.478 0.00 0.00 33.96 3.07
3825 4150 0.249953 TGGGTCGCTCGCTTGTAAAA 60.250 50.000 0.00 0.00 0.00 1.52
3831 4156 3.764466 CTCCTGGGTCGCTCGCTT 61.764 66.667 0.00 0.00 0.00 4.68
3844 4169 5.017431 TGGGATATATGCTAGGGTTACTCCT 59.983 44.000 4.09 0.00 40.79 3.69
3970 4295 9.716531 CTTGCATTCAATATCTAGAGTCCAATA 57.283 33.333 0.00 0.00 0.00 1.90
4016 4341 6.205464 TCATGACCAACAAGATTGAGAACTTC 59.795 38.462 0.00 0.00 0.00 3.01
4020 4345 6.957920 TTTCATGACCAACAAGATTGAGAA 57.042 33.333 0.00 0.00 0.00 2.87
4021 4346 6.944290 AGATTTCATGACCAACAAGATTGAGA 59.056 34.615 0.00 0.00 0.00 3.27
4022 4347 7.154435 AGATTTCATGACCAACAAGATTGAG 57.846 36.000 0.00 0.00 0.00 3.02
4024 4349 8.048534 ACTAGATTTCATGACCAACAAGATTG 57.951 34.615 0.00 0.00 0.00 2.67
4025 4350 9.911788 ATACTAGATTTCATGACCAACAAGATT 57.088 29.630 0.00 0.00 0.00 2.40
4026 4351 9.334947 CATACTAGATTTCATGACCAACAAGAT 57.665 33.333 0.00 0.00 0.00 2.40
4027 4352 7.770433 CCATACTAGATTTCATGACCAACAAGA 59.230 37.037 0.00 0.00 0.00 3.02
4028 4353 7.554118 ACCATACTAGATTTCATGACCAACAAG 59.446 37.037 0.00 0.00 0.00 3.16
4035 4364 8.301002 GGACTCTACCATACTAGATTTCATGAC 58.699 40.741 0.00 0.00 0.00 3.06
4042 4371 6.007703 GCTCTGGACTCTACCATACTAGATT 58.992 44.000 0.00 0.00 39.34 2.40
4054 4383 4.026744 AGCACATAAAGCTCTGGACTCTA 58.973 43.478 0.00 0.00 38.01 2.43
4062 4391 8.213679 TGAATAAGGAATAGCACATAAAGCTCT 58.786 33.333 0.00 0.00 42.32 4.09
4165 4494 5.033589 TGCAGGGTCATTGATTTGTTTTT 57.966 34.783 0.00 0.00 0.00 1.94
4170 4499 5.840243 TCTAATGCAGGGTCATTGATTTG 57.160 39.130 0.00 0.00 37.27 2.32
4171 4500 5.163622 CGTTCTAATGCAGGGTCATTGATTT 60.164 40.000 0.00 0.00 37.27 2.17
4174 4503 3.270027 CGTTCTAATGCAGGGTCATTGA 58.730 45.455 0.00 0.00 37.27 2.57
4175 4504 2.355756 CCGTTCTAATGCAGGGTCATTG 59.644 50.000 0.00 0.00 37.27 2.82
4176 4505 2.238646 TCCGTTCTAATGCAGGGTCATT 59.761 45.455 0.00 0.00 39.70 2.57
4178 4507 1.271856 TCCGTTCTAATGCAGGGTCA 58.728 50.000 0.00 0.00 0.00 4.02
4274 4616 9.765795 GGAGCCATATTATTACGCTAAGATAAT 57.234 33.333 0.00 0.00 32.44 1.28
4327 4669 5.064198 TGTGGTTTACTTCTCGTTTCACTTG 59.936 40.000 0.00 0.00 0.00 3.16
4329 4671 4.761975 TGTGGTTTACTTCTCGTTTCACT 58.238 39.130 0.00 0.00 0.00 3.41
4330 4672 5.668558 ATGTGGTTTACTTCTCGTTTCAC 57.331 39.130 0.00 0.00 0.00 3.18
4331 4673 9.661563 AATATATGTGGTTTACTTCTCGTTTCA 57.338 29.630 0.00 0.00 0.00 2.69
4335 4677 7.551262 TGCAAATATATGTGGTTTACTTCTCGT 59.449 33.333 5.03 0.00 0.00 4.18
4336 4678 7.915508 TGCAAATATATGTGGTTTACTTCTCG 58.084 34.615 5.03 0.00 0.00 4.04
4337 4679 9.109393 TCTGCAAATATATGTGGTTTACTTCTC 57.891 33.333 5.03 0.00 0.00 2.87
4338 4680 9.632638 ATCTGCAAATATATGTGGTTTACTTCT 57.367 29.630 5.03 0.00 0.00 2.85
4339 4681 9.669353 CATCTGCAAATATATGTGGTTTACTTC 57.331 33.333 5.03 0.00 0.00 3.01
4340 4682 8.137437 GCATCTGCAAATATATGTGGTTTACTT 58.863 33.333 5.03 0.00 41.59 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.