Multiple sequence alignment - TraesCS6B01G224500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G224500 chr6B 100.000 2399 0 0 1 2399 342808825 342806427 0.000000e+00 4431
1 TraesCS6B01G224500 chr6B 92.059 340 27 0 1 340 342815957 342815618 1.670000e-131 479
2 TraesCS6B01G224500 chr6B 98.630 219 3 0 340 558 342801397 342801179 2.890000e-104 388
3 TraesCS6B01G224500 chr6B 96.396 222 8 0 340 561 703264421 703264642 1.360000e-97 366
4 TraesCS6B01G224500 chr5B 96.843 2059 60 3 341 2399 271154794 271156847 0.000000e+00 3437
5 TraesCS6B01G224500 chr5B 99.087 219 2 0 340 558 271161879 271162097 6.220000e-106 394
6 TraesCS6B01G224500 chr5B 97.309 223 6 0 340 562 316559335 316559113 1.740000e-101 379
7 TraesCS6B01G224500 chr5B 94.872 234 9 2 338 570 420461143 420461374 1.750000e-96 363
8 TraesCS6B01G224500 chr6A 95.160 1591 63 4 812 2399 14149986 14148407 0.000000e+00 2499
9 TraesCS6B01G224500 chr6A 87.661 697 67 15 1710 2396 583032621 583033308 0.000000e+00 793
10 TraesCS6B01G224500 chr5A 95.097 1591 64 4 812 2399 693606373 693607952 0.000000e+00 2494
11 TraesCS6B01G224500 chr5A 94.853 272 14 0 547 818 439845697 439845968 2.200000e-115 425
12 TraesCS6B01G224500 chr3A 95.035 1591 65 4 812 2399 13830358 13828779 0.000000e+00 2488
13 TraesCS6B01G224500 chr2A 94.598 1592 70 6 812 2399 418808756 418810335 0.000000e+00 2449
14 TraesCS6B01G224500 chr2A 95.588 272 12 0 547 818 43670113 43669842 1.020000e-118 436
15 TraesCS6B01G224500 chr2B 91.065 817 59 10 1586 2399 155140268 155139463 0.000000e+00 1092
16 TraesCS6B01G224500 chr2B 92.496 693 41 3 817 1507 299000552 298999869 0.000000e+00 981
17 TraesCS6B01G224500 chr2B 85.149 303 27 7 1224 1526 155142153 155141869 6.490000e-76 294
18 TraesCS6B01G224500 chr2B 82.943 299 27 13 817 1094 728615723 728616018 5.120000e-62 248
19 TraesCS6B01G224500 chr2B 86.331 139 10 8 470 604 627001853 627001720 2.490000e-30 143
20 TraesCS6B01G224500 chr2B 90.000 80 8 0 1519 1598 155140609 155140530 1.170000e-18 104
21 TraesCS6B01G224500 chr1D 87.699 691 71 12 1713 2396 386796666 386795983 0.000000e+00 793
22 TraesCS6B01G224500 chr3B 87.320 694 69 15 1713 2396 775838944 775838260 0.000000e+00 776
23 TraesCS6B01G224500 chr3B 96.104 231 8 1 341 570 807704220 807704450 2.250000e-100 375
24 TraesCS6B01G224500 chr3B 96.818 220 7 0 340 559 807710934 807711153 3.770000e-98 368
25 TraesCS6B01G224500 chr5D 92.353 340 26 0 1 340 517202862 517202523 3.590000e-133 484
26 TraesCS6B01G224500 chr5D 91.642 335 26 2 6 340 320107507 320107175 1.680000e-126 462
27 TraesCS6B01G224500 chr5D 91.176 340 30 0 1 340 517209953 517209614 1.680000e-126 462
28 TraesCS6B01G224500 chr5D 95.956 272 11 0 547 818 45042055 45042326 2.190000e-120 442
29 TraesCS6B01G224500 chr3D 91.765 340 28 0 1 340 529591438 529591099 7.760000e-130 473
30 TraesCS6B01G224500 chr4D 91.765 340 27 1 1 340 178736861 178736523 2.790000e-129 472
31 TraesCS6B01G224500 chr4D 90.909 341 29 2 1 340 380374989 380374650 7.820000e-125 457
32 TraesCS6B01G224500 chr2D 91.765 340 27 1 1 340 519199468 519199806 2.790000e-129 472
33 TraesCS6B01G224500 chr2D 91.642 335 27 1 6 340 394463081 394463414 1.680000e-126 462
34 TraesCS6B01G224500 chr2D 97.717 219 5 0 340 558 99201889 99202107 6.260000e-101 377
35 TraesCS6B01G224500 chr2D 85.526 152 20 2 943 1094 123135476 123135327 8.880000e-35 158
36 TraesCS6B01G224500 chr1B 92.647 272 18 2 547 818 623270842 623270573 8.040000e-105 390
37 TraesCS6B01G224500 chr7B 82.943 299 27 13 817 1094 93325548 93325253 5.120000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G224500 chr6B 342806427 342808825 2398 True 4431.000000 4431 100.000 1 2399 1 chr6B.!!$R2 2398
1 TraesCS6B01G224500 chr5B 271154794 271156847 2053 False 3437.000000 3437 96.843 341 2399 1 chr5B.!!$F1 2058
2 TraesCS6B01G224500 chr6A 14148407 14149986 1579 True 2499.000000 2499 95.160 812 2399 1 chr6A.!!$R1 1587
3 TraesCS6B01G224500 chr6A 583032621 583033308 687 False 793.000000 793 87.661 1710 2396 1 chr6A.!!$F1 686
4 TraesCS6B01G224500 chr5A 693606373 693607952 1579 False 2494.000000 2494 95.097 812 2399 1 chr5A.!!$F2 1587
5 TraesCS6B01G224500 chr3A 13828779 13830358 1579 True 2488.000000 2488 95.035 812 2399 1 chr3A.!!$R1 1587
6 TraesCS6B01G224500 chr2A 418808756 418810335 1579 False 2449.000000 2449 94.598 812 2399 1 chr2A.!!$F1 1587
7 TraesCS6B01G224500 chr2B 298999869 299000552 683 True 981.000000 981 92.496 817 1507 1 chr2B.!!$R1 690
8 TraesCS6B01G224500 chr2B 155139463 155142153 2690 True 496.666667 1092 88.738 1224 2399 3 chr2B.!!$R3 1175
9 TraesCS6B01G224500 chr1D 386795983 386796666 683 True 793.000000 793 87.699 1713 2396 1 chr1D.!!$R1 683
10 TraesCS6B01G224500 chr3B 775838260 775838944 684 True 776.000000 776 87.320 1713 2396 1 chr3B.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.038166 TAAGAGGTTGGCTTGCCTGG 59.962 55.0 13.18 0.0 34.81 4.45 F
156 157 0.038618 GTTTACGGGCAAGGGCAAAG 60.039 55.0 0.00 0.0 43.71 2.77 F
230 231 0.097150 TGACGAGATGAAGACGCGAG 59.903 55.0 15.93 0.0 34.93 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1037 1039 1.191489 TGAAGGATGTCGCCACTCCA 61.191 55.000 3.6 0.0 0.0 3.86 R
1381 1384 1.518572 CTTATCCCGTGCGAGCGTT 60.519 57.895 0.0 0.0 0.0 4.84 R
1409 1421 6.217487 TCCAAAGAAGATAAGATCCCCAAAGA 59.783 38.462 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.523934 GTGCAAGCAAAGTCAACATGC 59.476 47.619 0.00 3.56 40.34 4.06
21 22 1.136500 TGCAAGCAAAGTCAACATGCA 59.864 42.857 11.77 0.00 42.45 3.96
22 23 2.203401 GCAAGCAAAGTCAACATGCAA 58.797 42.857 11.77 0.00 42.45 4.08
23 24 2.220133 GCAAGCAAAGTCAACATGCAAG 59.780 45.455 11.77 0.00 42.45 4.01
24 25 3.450578 CAAGCAAAGTCAACATGCAAGT 58.549 40.909 11.77 0.00 42.45 3.16
25 26 3.806625 AGCAAAGTCAACATGCAAGTT 57.193 38.095 0.51 0.51 42.45 2.66
26 27 4.916983 AGCAAAGTCAACATGCAAGTTA 57.083 36.364 7.05 0.00 42.45 2.24
27 28 5.458041 AGCAAAGTCAACATGCAAGTTAT 57.542 34.783 7.05 0.00 42.45 1.89
28 29 5.224888 AGCAAAGTCAACATGCAAGTTATG 58.775 37.500 7.05 0.00 42.45 1.90
29 30 4.386652 GCAAAGTCAACATGCAAGTTATGG 59.613 41.667 7.05 0.00 39.81 2.74
30 31 4.789012 AAGTCAACATGCAAGTTATGGG 57.211 40.909 7.05 0.00 0.00 4.00
31 32 2.493278 AGTCAACATGCAAGTTATGGGC 59.507 45.455 7.05 0.00 0.00 5.36
32 33 2.493278 GTCAACATGCAAGTTATGGGCT 59.507 45.455 7.05 0.00 0.00 5.19
33 34 2.754552 TCAACATGCAAGTTATGGGCTC 59.245 45.455 7.05 0.00 0.00 4.70
34 35 2.492881 CAACATGCAAGTTATGGGCTCA 59.507 45.455 7.05 0.00 0.00 4.26
35 36 3.022557 ACATGCAAGTTATGGGCTCAT 57.977 42.857 3.57 3.57 37.40 2.90
36 37 2.691526 ACATGCAAGTTATGGGCTCATG 59.308 45.455 10.07 0.00 34.12 3.07
37 38 2.804986 TGCAAGTTATGGGCTCATGA 57.195 45.000 10.07 0.00 34.96 3.07
38 39 3.301794 TGCAAGTTATGGGCTCATGAT 57.698 42.857 10.07 0.00 34.96 2.45
39 40 4.436113 TGCAAGTTATGGGCTCATGATA 57.564 40.909 10.07 0.00 34.96 2.15
40 41 4.790937 TGCAAGTTATGGGCTCATGATAA 58.209 39.130 10.07 0.00 34.96 1.75
41 42 4.823442 TGCAAGTTATGGGCTCATGATAAG 59.177 41.667 10.07 0.00 34.96 1.73
42 43 5.065914 GCAAGTTATGGGCTCATGATAAGA 58.934 41.667 10.07 0.00 34.96 2.10
43 44 5.180868 GCAAGTTATGGGCTCATGATAAGAG 59.819 44.000 10.07 0.00 34.96 2.85
44 45 5.495926 AGTTATGGGCTCATGATAAGAGG 57.504 43.478 10.07 0.00 34.96 3.69
45 46 4.910304 AGTTATGGGCTCATGATAAGAGGT 59.090 41.667 10.07 0.00 34.96 3.85
46 47 5.370880 AGTTATGGGCTCATGATAAGAGGTT 59.629 40.000 10.07 0.00 34.96 3.50
47 48 3.565764 TGGGCTCATGATAAGAGGTTG 57.434 47.619 0.00 0.00 33.72 3.77
48 49 2.173356 TGGGCTCATGATAAGAGGTTGG 59.827 50.000 0.00 0.00 33.72 3.77
49 50 2.225467 GGCTCATGATAAGAGGTTGGC 58.775 52.381 0.00 0.00 33.72 4.52
50 51 2.158696 GGCTCATGATAAGAGGTTGGCT 60.159 50.000 0.00 0.00 33.72 4.75
51 52 3.549794 GCTCATGATAAGAGGTTGGCTT 58.450 45.455 0.00 0.00 33.72 4.35
52 53 3.314635 GCTCATGATAAGAGGTTGGCTTG 59.685 47.826 0.00 0.00 33.72 4.01
53 54 3.282021 TCATGATAAGAGGTTGGCTTGC 58.718 45.455 0.00 0.00 0.00 4.01
54 55 2.128771 TGATAAGAGGTTGGCTTGCC 57.871 50.000 4.43 4.43 0.00 4.52
55 56 1.635487 TGATAAGAGGTTGGCTTGCCT 59.365 47.619 13.18 0.00 37.91 4.75
56 57 2.019984 GATAAGAGGTTGGCTTGCCTG 58.980 52.381 13.18 0.00 34.81 4.85
57 58 0.038166 TAAGAGGTTGGCTTGCCTGG 59.962 55.000 13.18 0.00 34.81 4.45
58 59 2.677875 GAGGTTGGCTTGCCTGGG 60.678 66.667 13.18 0.00 34.81 4.45
59 60 4.305956 AGGTTGGCTTGCCTGGGG 62.306 66.667 13.18 0.00 33.13 4.96
61 62 4.621087 GTTGGCTTGCCTGGGGGT 62.621 66.667 13.18 0.00 34.45 4.95
62 63 4.299796 TTGGCTTGCCTGGGGGTC 62.300 66.667 13.18 0.00 34.45 4.46
64 65 4.299796 GGCTTGCCTGGGGGTCAA 62.300 66.667 4.11 0.00 34.45 3.18
65 66 2.677875 GCTTGCCTGGGGGTCAAG 60.678 66.667 7.24 7.24 43.23 3.02
66 67 2.036256 CTTGCCTGGGGGTCAAGG 59.964 66.667 0.00 0.00 40.10 3.61
67 68 2.451493 TTGCCTGGGGGTCAAGGA 60.451 61.111 0.00 0.00 34.45 3.36
68 69 1.856873 TTGCCTGGGGGTCAAGGAT 60.857 57.895 0.00 0.00 34.45 3.24
69 70 1.442886 TTGCCTGGGGGTCAAGGATT 61.443 55.000 0.00 0.00 34.45 3.01
70 71 0.551377 TGCCTGGGGGTCAAGGATTA 60.551 55.000 0.00 0.00 34.45 1.75
71 72 0.106669 GCCTGGGGGTCAAGGATTAC 60.107 60.000 0.00 0.00 34.45 1.89
72 73 1.596496 CCTGGGGGTCAAGGATTACT 58.404 55.000 0.00 0.00 0.00 2.24
73 74 1.490910 CCTGGGGGTCAAGGATTACTC 59.509 57.143 0.00 0.00 0.00 2.59
74 75 1.490910 CTGGGGGTCAAGGATTACTCC 59.509 57.143 0.00 0.00 42.43 3.85
85 86 3.759527 GGATTACTCCGGAAAAAGTGC 57.240 47.619 5.23 0.00 0.00 4.40
86 87 2.095372 GGATTACTCCGGAAAAAGTGCG 59.905 50.000 5.23 0.00 41.45 5.34
103 104 4.489249 GGAACGATCGCGGAAAGA 57.511 55.556 16.60 0.00 43.17 2.52
104 105 2.973420 GGAACGATCGCGGAAAGAT 58.027 52.632 16.60 0.00 43.17 2.40
105 106 1.287425 GGAACGATCGCGGAAAGATT 58.713 50.000 16.60 0.00 43.17 2.40
106 107 1.664151 GGAACGATCGCGGAAAGATTT 59.336 47.619 16.60 0.00 43.17 2.17
107 108 2.095372 GGAACGATCGCGGAAAGATTTT 59.905 45.455 16.60 0.00 43.17 1.82
108 109 3.425758 GGAACGATCGCGGAAAGATTTTT 60.426 43.478 16.60 0.00 43.17 1.94
109 110 3.385079 ACGATCGCGGAAAGATTTTTC 57.615 42.857 16.60 0.06 43.17 2.29
110 111 2.222729 ACGATCGCGGAAAGATTTTTCG 60.223 45.455 16.60 0.00 42.93 3.46
111 112 2.705154 GATCGCGGAAAGATTTTTCGG 58.295 47.619 6.13 10.77 42.93 4.30
112 113 1.798283 TCGCGGAAAGATTTTTCGGA 58.202 45.000 17.21 6.19 42.83 4.55
113 114 2.144730 TCGCGGAAAGATTTTTCGGAA 58.855 42.857 17.21 4.71 42.83 4.30
114 115 2.548904 TCGCGGAAAGATTTTTCGGAAA 59.451 40.909 17.21 0.00 42.83 3.13
115 116 2.655001 CGCGGAAAGATTTTTCGGAAAC 59.345 45.455 17.21 2.68 42.83 2.78
116 117 3.634283 GCGGAAAGATTTTTCGGAAACA 58.366 40.909 17.21 0.00 42.83 2.83
117 118 3.668656 GCGGAAAGATTTTTCGGAAACAG 59.331 43.478 17.21 0.00 42.83 3.16
118 119 4.791734 GCGGAAAGATTTTTCGGAAACAGT 60.792 41.667 17.21 0.00 42.83 3.55
119 120 5.278604 CGGAAAGATTTTTCGGAAACAGTT 58.721 37.500 9.83 0.00 42.83 3.16
120 121 5.398416 CGGAAAGATTTTTCGGAAACAGTTC 59.602 40.000 9.83 3.06 42.83 3.01
121 122 6.504398 GGAAAGATTTTTCGGAAACAGTTCT 58.496 36.000 1.96 1.00 42.93 3.01
122 123 6.637254 GGAAAGATTTTTCGGAAACAGTTCTC 59.363 38.462 1.96 0.00 42.93 2.87
123 124 6.944234 AAGATTTTTCGGAAACAGTTCTCT 57.056 33.333 1.96 0.00 33.92 3.10
124 125 6.546972 AGATTTTTCGGAAACAGTTCTCTC 57.453 37.500 1.96 0.00 33.92 3.20
125 126 6.292150 AGATTTTTCGGAAACAGTTCTCTCT 58.708 36.000 1.96 0.00 33.92 3.10
126 127 5.986004 TTTTTCGGAAACAGTTCTCTCTC 57.014 39.130 1.96 0.00 33.92 3.20
127 128 2.991434 TCGGAAACAGTTCTCTCTCG 57.009 50.000 0.00 0.00 33.92 4.04
128 129 1.540267 TCGGAAACAGTTCTCTCTCGG 59.460 52.381 0.00 0.00 33.92 4.63
129 130 1.540267 CGGAAACAGTTCTCTCTCGGA 59.460 52.381 0.00 0.00 33.92 4.55
130 131 2.164624 CGGAAACAGTTCTCTCTCGGAT 59.835 50.000 0.00 0.00 33.92 4.18
131 132 3.516615 GGAAACAGTTCTCTCTCGGATG 58.483 50.000 0.00 0.00 33.92 3.51
132 133 3.516615 GAAACAGTTCTCTCTCGGATGG 58.483 50.000 0.00 0.00 0.00 3.51
133 134 1.479709 ACAGTTCTCTCTCGGATGGG 58.520 55.000 0.00 0.00 0.00 4.00
134 135 0.749649 CAGTTCTCTCTCGGATGGGG 59.250 60.000 0.00 0.00 0.00 4.96
135 136 1.045911 AGTTCTCTCTCGGATGGGGC 61.046 60.000 0.00 0.00 0.00 5.80
136 137 1.045911 GTTCTCTCTCGGATGGGGCT 61.046 60.000 0.00 0.00 0.00 5.19
137 138 1.045350 TTCTCTCTCGGATGGGGCTG 61.045 60.000 0.00 0.00 0.00 4.85
138 139 1.760086 CTCTCTCGGATGGGGCTGT 60.760 63.158 0.00 0.00 0.00 4.40
139 140 1.306141 TCTCTCGGATGGGGCTGTT 60.306 57.895 0.00 0.00 0.00 3.16
140 141 0.909610 TCTCTCGGATGGGGCTGTTT 60.910 55.000 0.00 0.00 0.00 2.83
141 142 0.830648 CTCTCGGATGGGGCTGTTTA 59.169 55.000 0.00 0.00 0.00 2.01
142 143 0.539986 TCTCGGATGGGGCTGTTTAC 59.460 55.000 0.00 0.00 0.00 2.01
143 144 0.810031 CTCGGATGGGGCTGTTTACG 60.810 60.000 0.00 0.00 0.00 3.18
144 145 1.817941 CGGATGGGGCTGTTTACGG 60.818 63.158 0.00 0.00 0.00 4.02
145 146 1.453197 GGATGGGGCTGTTTACGGG 60.453 63.158 0.00 0.00 0.00 5.28
146 147 2.044352 ATGGGGCTGTTTACGGGC 60.044 61.111 6.71 6.71 45.98 6.13
150 151 3.274067 GGCTGTTTACGGGCAAGG 58.726 61.111 10.09 0.00 45.98 3.61
151 152 2.340328 GGCTGTTTACGGGCAAGGG 61.340 63.158 10.09 0.00 45.98 3.95
152 153 2.989881 GCTGTTTACGGGCAAGGGC 61.990 63.158 0.00 0.00 40.13 5.19
153 154 1.602323 CTGTTTACGGGCAAGGGCA 60.602 57.895 0.00 0.00 43.71 5.36
154 155 1.152735 TGTTTACGGGCAAGGGCAA 60.153 52.632 0.00 0.00 43.71 4.52
155 156 0.755698 TGTTTACGGGCAAGGGCAAA 60.756 50.000 0.00 0.00 43.71 3.68
156 157 0.038618 GTTTACGGGCAAGGGCAAAG 60.039 55.000 0.00 0.00 43.71 2.77
157 158 0.468400 TTTACGGGCAAGGGCAAAGT 60.468 50.000 0.00 0.00 43.71 2.66
158 159 1.175983 TTACGGGCAAGGGCAAAGTG 61.176 55.000 0.00 0.00 43.71 3.16
159 160 3.683937 CGGGCAAGGGCAAAGTGG 61.684 66.667 0.00 0.00 43.71 4.00
160 161 2.524148 GGGCAAGGGCAAAGTGGT 60.524 61.111 0.00 0.00 43.71 4.16
161 162 2.574018 GGGCAAGGGCAAAGTGGTC 61.574 63.158 0.00 0.00 43.71 4.02
162 163 1.832167 GGCAAGGGCAAAGTGGTCA 60.832 57.895 0.00 0.00 43.71 4.02
163 164 1.187567 GGCAAGGGCAAAGTGGTCAT 61.188 55.000 0.00 0.00 43.71 3.06
164 165 0.681175 GCAAGGGCAAAGTGGTCATT 59.319 50.000 0.00 0.00 40.72 2.57
165 166 1.070601 GCAAGGGCAAAGTGGTCATTT 59.929 47.619 0.00 0.00 40.72 2.32
166 167 2.485302 GCAAGGGCAAAGTGGTCATTTT 60.485 45.455 0.00 0.00 40.72 1.82
167 168 3.392882 CAAGGGCAAAGTGGTCATTTTC 58.607 45.455 0.00 0.00 0.00 2.29
168 169 2.676748 AGGGCAAAGTGGTCATTTTCA 58.323 42.857 0.00 0.00 0.00 2.69
169 170 2.365293 AGGGCAAAGTGGTCATTTTCAC 59.635 45.455 0.00 0.00 0.00 3.18
170 171 2.365293 GGGCAAAGTGGTCATTTTCACT 59.635 45.455 0.00 0.00 45.06 3.41
171 172 3.383761 GGCAAAGTGGTCATTTTCACTG 58.616 45.455 0.00 0.00 42.67 3.66
172 173 3.181476 GGCAAAGTGGTCATTTTCACTGT 60.181 43.478 0.00 0.00 42.67 3.55
173 174 3.798337 GCAAAGTGGTCATTTTCACTGTG 59.202 43.478 0.17 0.17 46.55 3.66
174 175 4.677779 GCAAAGTGGTCATTTTCACTGTGT 60.678 41.667 7.79 0.00 45.91 3.72
175 176 4.637483 AAGTGGTCATTTTCACTGTGTG 57.363 40.909 7.79 0.00 42.67 3.82
176 177 2.951642 AGTGGTCATTTTCACTGTGTGG 59.048 45.455 7.79 0.00 42.00 4.17
177 178 2.948979 GTGGTCATTTTCACTGTGTGGA 59.051 45.455 7.79 0.00 33.87 4.02
178 179 3.380004 GTGGTCATTTTCACTGTGTGGAA 59.620 43.478 7.79 2.15 33.87 3.53
179 180 4.019858 TGGTCATTTTCACTGTGTGGAAA 58.980 39.130 7.79 6.62 43.89 3.13
180 181 4.142271 TGGTCATTTTCACTGTGTGGAAAC 60.142 41.667 7.79 1.34 42.78 2.78
181 182 4.142271 GGTCATTTTCACTGTGTGGAAACA 60.142 41.667 7.79 0.00 42.78 2.83
182 183 5.451798 GGTCATTTTCACTGTGTGGAAACAT 60.452 40.000 7.79 0.00 42.78 2.71
183 184 6.238897 GGTCATTTTCACTGTGTGGAAACATA 60.239 38.462 7.79 0.00 42.78 2.29
184 185 7.199766 GTCATTTTCACTGTGTGGAAACATAA 58.800 34.615 7.79 0.00 42.78 1.90
185 186 7.867403 GTCATTTTCACTGTGTGGAAACATAAT 59.133 33.333 7.79 0.00 42.78 1.28
186 187 7.866898 TCATTTTCACTGTGTGGAAACATAATG 59.133 33.333 7.79 4.44 42.78 1.90
187 188 6.951062 TTTCACTGTGTGGAAACATAATGA 57.049 33.333 7.79 0.00 46.14 2.57
188 189 6.951062 TTCACTGTGTGGAAACATAATGAA 57.049 33.333 7.79 0.00 46.14 2.57
189 190 6.951062 TCACTGTGTGGAAACATAATGAAA 57.049 33.333 7.79 0.00 46.14 2.69
190 191 7.340122 TCACTGTGTGGAAACATAATGAAAA 57.660 32.000 7.79 0.00 46.14 2.29
191 192 7.950512 TCACTGTGTGGAAACATAATGAAAAT 58.049 30.769 7.79 0.00 46.14 1.82
192 193 7.866898 TCACTGTGTGGAAACATAATGAAAATG 59.133 33.333 7.79 0.00 46.14 2.32
193 194 7.866898 CACTGTGTGGAAACATAATGAAAATGA 59.133 33.333 0.00 0.00 46.14 2.57
194 195 8.587608 ACTGTGTGGAAACATAATGAAAATGAT 58.412 29.630 0.00 0.00 46.14 2.45
196 197 9.853555 TGTGTGGAAACATAATGAAAATGATAC 57.146 29.630 0.00 0.00 46.14 2.24
197 198 9.301153 GTGTGGAAACATAATGAAAATGATACC 57.699 33.333 0.00 0.00 46.14 2.73
198 199 9.029368 TGTGGAAACATAATGAAAATGATACCA 57.971 29.630 0.00 0.00 46.14 3.25
199 200 9.868277 GTGGAAACATAATGAAAATGATACCAA 57.132 29.630 0.00 0.00 46.14 3.67
200 201 9.868277 TGGAAACATAATGAAAATGATACCAAC 57.132 29.630 0.00 0.00 33.40 3.77
201 202 9.019764 GGAAACATAATGAAAATGATACCAACG 57.980 33.333 0.00 0.00 0.00 4.10
202 203 7.985634 AACATAATGAAAATGATACCAACGC 57.014 32.000 0.00 0.00 0.00 4.84
203 204 7.094508 ACATAATGAAAATGATACCAACGCA 57.905 32.000 0.00 0.00 0.00 5.24
204 205 7.542890 ACATAATGAAAATGATACCAACGCAA 58.457 30.769 0.00 0.00 0.00 4.85
205 206 8.031864 ACATAATGAAAATGATACCAACGCAAA 58.968 29.630 0.00 0.00 0.00 3.68
206 207 6.949578 AATGAAAATGATACCAACGCAAAG 57.050 33.333 0.00 0.00 0.00 2.77
207 208 5.697473 TGAAAATGATACCAACGCAAAGA 57.303 34.783 0.00 0.00 0.00 2.52
208 209 5.698832 TGAAAATGATACCAACGCAAAGAG 58.301 37.500 0.00 0.00 0.00 2.85
209 210 5.240623 TGAAAATGATACCAACGCAAAGAGT 59.759 36.000 0.00 0.00 0.00 3.24
210 211 5.705609 AAATGATACCAACGCAAAGAGTT 57.294 34.783 0.00 0.00 0.00 3.01
211 212 5.705609 AATGATACCAACGCAAAGAGTTT 57.294 34.783 0.00 0.00 0.00 2.66
212 213 4.481930 TGATACCAACGCAAAGAGTTTG 57.518 40.909 0.00 0.00 43.44 2.93
213 214 4.130857 TGATACCAACGCAAAGAGTTTGA 58.869 39.130 3.56 0.00 43.26 2.69
214 215 2.844122 ACCAACGCAAAGAGTTTGAC 57.156 45.000 3.56 0.00 43.26 3.18
215 216 1.063469 ACCAACGCAAAGAGTTTGACG 59.937 47.619 3.56 8.59 43.26 4.35
216 217 1.329292 CCAACGCAAAGAGTTTGACGA 59.671 47.619 17.13 0.00 43.26 4.20
217 218 2.599848 CCAACGCAAAGAGTTTGACGAG 60.600 50.000 17.13 11.35 43.26 4.18
218 219 2.218953 ACGCAAAGAGTTTGACGAGA 57.781 45.000 17.13 0.00 43.26 4.04
219 220 2.755650 ACGCAAAGAGTTTGACGAGAT 58.244 42.857 17.13 0.52 43.26 2.75
220 221 2.476619 ACGCAAAGAGTTTGACGAGATG 59.523 45.455 17.13 0.00 43.26 2.90
221 222 2.731451 CGCAAAGAGTTTGACGAGATGA 59.269 45.455 3.56 0.00 43.26 2.92
222 223 3.184379 CGCAAAGAGTTTGACGAGATGAA 59.816 43.478 3.56 0.00 43.26 2.57
223 224 4.665142 CGCAAAGAGTTTGACGAGATGAAG 60.665 45.833 3.56 0.00 43.26 3.02
224 225 4.449068 GCAAAGAGTTTGACGAGATGAAGA 59.551 41.667 3.56 0.00 43.26 2.87
225 226 5.613577 GCAAAGAGTTTGACGAGATGAAGAC 60.614 44.000 3.56 0.00 43.26 3.01
226 227 3.827625 AGAGTTTGACGAGATGAAGACG 58.172 45.455 0.00 0.00 0.00 4.18
227 228 2.329379 AGTTTGACGAGATGAAGACGC 58.671 47.619 0.00 0.00 0.00 5.19
228 229 1.057847 GTTTGACGAGATGAAGACGCG 59.942 52.381 3.53 3.53 36.71 6.01
229 230 0.519961 TTGACGAGATGAAGACGCGA 59.480 50.000 15.93 0.00 34.93 5.87
230 231 0.097150 TGACGAGATGAAGACGCGAG 59.903 55.000 15.93 0.00 34.93 5.03
231 232 1.197368 GACGAGATGAAGACGCGAGC 61.197 60.000 15.93 3.96 34.93 5.03
232 233 2.282361 CGAGATGAAGACGCGAGCG 61.282 63.158 15.93 16.38 46.03 5.03
242 243 2.389143 CGCGAGCGTCGGTTTTAC 59.611 61.111 0.00 0.00 40.84 2.01
243 244 2.774126 GCGAGCGTCGGTTTTACC 59.226 61.111 0.00 0.00 40.84 2.85
244 245 1.735559 GCGAGCGTCGGTTTTACCT 60.736 57.895 0.00 0.00 40.84 3.08
245 246 1.287041 GCGAGCGTCGGTTTTACCTT 61.287 55.000 0.00 0.00 40.84 3.50
246 247 1.981254 CGAGCGTCGGTTTTACCTTA 58.019 50.000 0.00 0.00 35.66 2.69
247 248 2.327568 CGAGCGTCGGTTTTACCTTAA 58.672 47.619 0.00 0.00 35.66 1.85
248 249 2.925563 CGAGCGTCGGTTTTACCTTAAT 59.074 45.455 0.00 0.00 35.66 1.40
249 250 3.000376 CGAGCGTCGGTTTTACCTTAATC 60.000 47.826 0.00 0.00 35.66 1.75
250 251 2.925563 AGCGTCGGTTTTACCTTAATCG 59.074 45.455 0.00 0.00 35.66 3.34
251 252 2.029606 GCGTCGGTTTTACCTTAATCGG 59.970 50.000 0.00 0.00 35.66 4.18
252 253 3.510719 CGTCGGTTTTACCTTAATCGGA 58.489 45.455 0.00 0.00 35.66 4.55
253 254 4.114794 CGTCGGTTTTACCTTAATCGGAT 58.885 43.478 0.00 0.00 35.66 4.18
254 255 4.567959 CGTCGGTTTTACCTTAATCGGATT 59.432 41.667 8.49 8.49 35.66 3.01
255 256 5.063817 CGTCGGTTTTACCTTAATCGGATTT 59.936 40.000 8.76 0.00 35.66 2.17
256 257 6.255453 CGTCGGTTTTACCTTAATCGGATTTA 59.745 38.462 8.76 0.00 35.66 1.40
257 258 7.401860 GTCGGTTTTACCTTAATCGGATTTAC 58.598 38.462 8.76 0.00 35.66 2.01
258 259 6.255453 TCGGTTTTACCTTAATCGGATTTACG 59.745 38.462 8.76 0.00 35.66 3.18
259 260 6.509997 CGGTTTTACCTTAATCGGATTTACGG 60.510 42.308 8.76 9.30 35.66 4.02
260 261 6.316140 GGTTTTACCTTAATCGGATTTACGGT 59.684 38.462 8.76 14.01 37.45 4.83
261 262 7.148255 GGTTTTACCTTAATCGGATTTACGGTT 60.148 37.037 17.52 0.00 35.83 4.44
262 263 6.907206 TTACCTTAATCGGATTTACGGTTG 57.093 37.500 17.52 2.77 37.78 3.77
263 264 4.835678 ACCTTAATCGGATTTACGGTTGT 58.164 39.130 8.76 0.00 37.78 3.32
264 265 4.872124 ACCTTAATCGGATTTACGGTTGTC 59.128 41.667 8.76 0.00 37.78 3.18
265 266 4.026310 CCTTAATCGGATTTACGGTTGTCG 60.026 45.833 8.76 0.00 37.78 4.35
266 267 2.945447 ATCGGATTTACGGTTGTCGA 57.055 45.000 0.00 0.00 42.43 4.20
267 268 2.267188 TCGGATTTACGGTTGTCGAG 57.733 50.000 0.00 0.00 42.43 4.04
268 269 1.811965 TCGGATTTACGGTTGTCGAGA 59.188 47.619 0.00 0.00 42.43 4.04
269 270 2.424601 TCGGATTTACGGTTGTCGAGAT 59.575 45.455 0.00 0.00 42.43 2.75
270 271 3.627123 TCGGATTTACGGTTGTCGAGATA 59.373 43.478 0.00 0.00 42.43 1.98
271 272 4.276678 TCGGATTTACGGTTGTCGAGATAT 59.723 41.667 0.00 0.00 42.43 1.63
272 273 4.381863 CGGATTTACGGTTGTCGAGATATG 59.618 45.833 0.00 0.00 42.43 1.78
273 274 5.526115 GGATTTACGGTTGTCGAGATATGA 58.474 41.667 0.00 0.00 42.43 2.15
274 275 5.981315 GGATTTACGGTTGTCGAGATATGAA 59.019 40.000 0.00 0.00 42.43 2.57
275 276 6.144080 GGATTTACGGTTGTCGAGATATGAAG 59.856 42.308 0.00 0.00 42.43 3.02
276 277 3.438297 ACGGTTGTCGAGATATGAAGG 57.562 47.619 0.00 0.00 42.43 3.46
277 278 2.100916 ACGGTTGTCGAGATATGAAGGG 59.899 50.000 0.00 0.00 42.43 3.95
278 279 2.100916 CGGTTGTCGAGATATGAAGGGT 59.899 50.000 0.00 0.00 42.43 4.34
279 280 3.430374 CGGTTGTCGAGATATGAAGGGTT 60.430 47.826 0.00 0.00 42.43 4.11
280 281 4.202080 CGGTTGTCGAGATATGAAGGGTTA 60.202 45.833 0.00 0.00 42.43 2.85
281 282 5.667466 GGTTGTCGAGATATGAAGGGTTAA 58.333 41.667 0.00 0.00 0.00 2.01
282 283 6.110707 GGTTGTCGAGATATGAAGGGTTAAA 58.889 40.000 0.00 0.00 0.00 1.52
283 284 6.258068 GGTTGTCGAGATATGAAGGGTTAAAG 59.742 42.308 0.00 0.00 0.00 1.85
284 285 6.540438 TGTCGAGATATGAAGGGTTAAAGT 57.460 37.500 0.00 0.00 0.00 2.66
285 286 6.942976 TGTCGAGATATGAAGGGTTAAAGTT 58.057 36.000 0.00 0.00 0.00 2.66
286 287 7.039882 TGTCGAGATATGAAGGGTTAAAGTTC 58.960 38.462 0.00 0.00 0.00 3.01
287 288 7.039882 GTCGAGATATGAAGGGTTAAAGTTCA 58.960 38.462 0.00 0.00 34.79 3.18
288 289 7.548075 GTCGAGATATGAAGGGTTAAAGTTCAA 59.452 37.037 0.00 0.00 34.02 2.69
289 290 7.764443 TCGAGATATGAAGGGTTAAAGTTCAAG 59.236 37.037 0.88 0.00 34.02 3.02
290 291 7.011482 CGAGATATGAAGGGTTAAAGTTCAAGG 59.989 40.741 0.88 0.00 34.02 3.61
291 292 7.928873 AGATATGAAGGGTTAAAGTTCAAGGA 58.071 34.615 0.88 0.00 34.02 3.36
292 293 7.829706 AGATATGAAGGGTTAAAGTTCAAGGAC 59.170 37.037 0.88 0.00 34.02 3.85
293 294 4.466827 TGAAGGGTTAAAGTTCAAGGACC 58.533 43.478 0.00 0.00 0.00 4.46
294 295 4.167307 TGAAGGGTTAAAGTTCAAGGACCT 59.833 41.667 0.00 0.00 0.00 3.85
295 296 5.370289 TGAAGGGTTAAAGTTCAAGGACCTA 59.630 40.000 0.00 0.00 0.00 3.08
296 297 6.045106 TGAAGGGTTAAAGTTCAAGGACCTAT 59.955 38.462 0.00 0.00 0.00 2.57
297 298 6.063496 AGGGTTAAAGTTCAAGGACCTATC 57.937 41.667 0.00 0.00 0.00 2.08
298 299 4.874396 GGGTTAAAGTTCAAGGACCTATCG 59.126 45.833 0.00 0.00 0.00 2.92
299 300 4.874396 GGTTAAAGTTCAAGGACCTATCGG 59.126 45.833 0.00 0.00 0.00 4.18
301 302 3.611766 AAGTTCAAGGACCTATCGGTG 57.388 47.619 0.00 0.00 45.73 4.94
302 303 2.816411 AGTTCAAGGACCTATCGGTGA 58.184 47.619 0.00 0.00 45.73 4.02
303 304 3.170717 AGTTCAAGGACCTATCGGTGAA 58.829 45.455 0.00 0.00 45.73 3.18
304 305 3.775316 AGTTCAAGGACCTATCGGTGAAT 59.225 43.478 8.46 0.00 45.73 2.57
305 306 4.225267 AGTTCAAGGACCTATCGGTGAATT 59.775 41.667 8.46 2.73 45.73 2.17
306 307 4.137116 TCAAGGACCTATCGGTGAATTG 57.863 45.455 0.00 0.00 45.73 2.32
307 308 3.517901 TCAAGGACCTATCGGTGAATTGT 59.482 43.478 0.00 0.00 45.73 2.71
308 309 4.019681 TCAAGGACCTATCGGTGAATTGTT 60.020 41.667 0.00 0.00 45.73 2.83
309 310 4.569719 AGGACCTATCGGTGAATTGTTT 57.430 40.909 0.00 0.00 45.73 2.83
310 311 4.918588 AGGACCTATCGGTGAATTGTTTT 58.081 39.130 0.00 0.00 45.73 2.43
311 312 4.941873 AGGACCTATCGGTGAATTGTTTTC 59.058 41.667 0.00 0.00 45.73 2.29
312 313 4.698304 GGACCTATCGGTGAATTGTTTTCA 59.302 41.667 0.00 0.00 45.73 2.69
313 314 5.163754 GGACCTATCGGTGAATTGTTTTCAG 60.164 44.000 0.00 0.00 45.73 3.02
314 315 4.156008 ACCTATCGGTGAATTGTTTTCAGC 59.844 41.667 7.31 7.31 43.51 4.26
315 316 4.155826 CCTATCGGTGAATTGTTTTCAGCA 59.844 41.667 15.31 5.61 44.53 4.41
316 317 4.582701 ATCGGTGAATTGTTTTCAGCAA 57.417 36.364 15.31 0.32 44.53 3.91
317 318 4.377839 TCGGTGAATTGTTTTCAGCAAA 57.622 36.364 15.31 3.02 44.53 3.68
318 319 4.109050 TCGGTGAATTGTTTTCAGCAAAC 58.891 39.130 15.31 0.00 44.53 2.93
324 325 3.289128 GTTTTCAGCAAACAGGCCC 57.711 52.632 0.00 0.00 43.93 5.80
325 326 0.597377 GTTTTCAGCAAACAGGCCCG 60.597 55.000 0.00 0.00 43.93 6.13
326 327 1.040339 TTTTCAGCAAACAGGCCCGT 61.040 50.000 0.00 0.00 0.00 5.28
327 328 1.733402 TTTCAGCAAACAGGCCCGTG 61.733 55.000 0.00 0.00 0.00 4.94
328 329 3.673484 CAGCAAACAGGCCCGTGG 61.673 66.667 0.00 0.00 0.00 4.94
329 330 3.884774 AGCAAACAGGCCCGTGGA 61.885 61.111 0.00 0.00 0.00 4.02
330 331 3.365265 GCAAACAGGCCCGTGGAG 61.365 66.667 0.00 0.00 0.00 3.86
331 332 2.672996 CAAACAGGCCCGTGGAGG 60.673 66.667 0.00 0.00 40.63 4.30
332 333 2.852075 AAACAGGCCCGTGGAGGA 60.852 61.111 0.00 0.00 45.00 3.71
333 334 2.457323 AAACAGGCCCGTGGAGGAA 61.457 57.895 0.00 0.00 45.00 3.36
334 335 2.002018 AAACAGGCCCGTGGAGGAAA 62.002 55.000 0.00 0.00 45.00 3.13
335 336 2.002018 AACAGGCCCGTGGAGGAAAA 62.002 55.000 0.00 0.00 45.00 2.29
336 337 1.228429 CAGGCCCGTGGAGGAAAAA 60.228 57.895 0.00 0.00 45.00 1.94
337 338 1.228459 AGGCCCGTGGAGGAAAAAC 60.228 57.895 0.00 0.00 45.00 2.43
338 339 1.228459 GGCCCGTGGAGGAAAAACT 60.228 57.895 0.00 0.00 45.00 2.66
339 340 1.524008 GGCCCGTGGAGGAAAAACTG 61.524 60.000 0.00 0.00 45.00 3.16
399 400 3.695830 ACCATCATTAGACGGTTGTGT 57.304 42.857 0.00 0.00 36.88 3.72
465 466 6.748658 CGTACGGACATGTCTCTTTGTAATTA 59.251 38.462 24.50 0.20 0.00 1.40
469 470 5.220605 GGACATGTCTCTTTGTAATTACCGC 60.221 44.000 24.50 0.00 0.00 5.68
579 580 2.527100 GTTATCAGCACGCTCGTAACT 58.473 47.619 12.48 0.00 0.00 2.24
623 624 1.515521 AAAGCGAAGGGGAAACAGCG 61.516 55.000 0.00 0.00 0.00 5.18
625 626 2.032071 CGAAGGGGAAACAGCGGT 59.968 61.111 0.00 0.00 0.00 5.68
660 661 0.900421 CATCTGGAGGCAGAGACACA 59.100 55.000 0.00 0.00 34.35 3.72
723 724 0.729116 CAATGTCAGACCATGGACGC 59.271 55.000 21.47 7.35 36.83 5.19
773 774 4.155733 CGCCCGCAGTACCCATCA 62.156 66.667 0.00 0.00 0.00 3.07
932 934 5.953548 ACATCAATCAGGTGATTCAATTCCA 59.046 36.000 2.07 0.00 42.41 3.53
942 944 7.273381 CAGGTGATTCAATTCCAATTTCGTTAC 59.727 37.037 0.00 0.00 0.00 2.50
1037 1039 2.517402 CTCGGCTAGGCTCCTCGT 60.517 66.667 15.11 0.00 0.00 4.18
1056 1058 1.191489 TGGAGTGGCGACATCCTTCA 61.191 55.000 17.24 3.77 46.14 3.02
1381 1384 0.608856 CAGCAGTTACCATGGCCACA 60.609 55.000 8.16 0.00 0.00 4.17
1409 1421 2.948600 GCACGGGATAAGAAATTGGGGT 60.949 50.000 0.00 0.00 0.00 4.95
1410 1422 2.949644 CACGGGATAAGAAATTGGGGTC 59.050 50.000 0.00 0.00 0.00 4.46
1411 1423 2.850568 ACGGGATAAGAAATTGGGGTCT 59.149 45.455 0.00 0.00 0.00 3.85
1412 1424 3.268595 ACGGGATAAGAAATTGGGGTCTT 59.731 43.478 0.00 0.00 37.78 3.01
1413 1425 4.264217 ACGGGATAAGAAATTGGGGTCTTT 60.264 41.667 0.00 0.00 35.69 2.52
1414 1426 4.097892 CGGGATAAGAAATTGGGGTCTTTG 59.902 45.833 0.00 0.00 35.69 2.77
1415 1427 4.405680 GGGATAAGAAATTGGGGTCTTTGG 59.594 45.833 0.00 0.00 35.69 3.28
1416 1428 4.405680 GGATAAGAAATTGGGGTCTTTGGG 59.594 45.833 0.00 0.00 35.69 4.12
1417 1429 2.325661 AGAAATTGGGGTCTTTGGGG 57.674 50.000 0.00 0.00 0.00 4.96
1843 3396 4.130118 CAAGGTATTGGTGGCATCTACTC 58.870 47.826 0.00 0.00 32.43 2.59
1844 3397 3.384168 AGGTATTGGTGGCATCTACTCA 58.616 45.455 0.00 0.00 0.00 3.41
1845 3398 3.976654 AGGTATTGGTGGCATCTACTCAT 59.023 43.478 0.00 0.00 0.00 2.90
1846 3399 5.155161 AGGTATTGGTGGCATCTACTCATA 58.845 41.667 0.00 0.00 0.00 2.15
1875 3428 5.710513 TGCAGATTATCCACCAATATTGC 57.289 39.130 10.11 0.00 31.61 3.56
1876 3429 5.139001 TGCAGATTATCCACCAATATTGCA 58.861 37.500 10.11 0.00 35.46 4.08
1936 3489 8.470002 ACCTTCAAAGTGCTATTCCAAATATTC 58.530 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.523934 GCATGTTGACTTTGCTTGCAC 59.476 47.619 0.00 0.00 34.68 4.57
1 2 1.136500 TGCATGTTGACTTTGCTTGCA 59.864 42.857 0.00 0.00 39.72 4.08
2 3 1.855513 TGCATGTTGACTTTGCTTGC 58.144 45.000 0.00 0.00 37.28 4.01
3 4 3.450578 ACTTGCATGTTGACTTTGCTTG 58.549 40.909 0.00 6.26 37.28 4.01
4 5 3.806625 ACTTGCATGTTGACTTTGCTT 57.193 38.095 0.00 0.00 37.28 3.91
5 6 3.806625 AACTTGCATGTTGACTTTGCT 57.193 38.095 16.45 0.00 37.28 3.91
6 7 4.386652 CCATAACTTGCATGTTGACTTTGC 59.613 41.667 24.00 0.00 36.91 3.68
7 8 4.925054 CCCATAACTTGCATGTTGACTTTG 59.075 41.667 24.00 14.14 0.00 2.77
8 9 4.561326 GCCCATAACTTGCATGTTGACTTT 60.561 41.667 24.00 3.31 0.00 2.66
9 10 3.056607 GCCCATAACTTGCATGTTGACTT 60.057 43.478 24.00 3.98 0.00 3.01
10 11 2.493278 GCCCATAACTTGCATGTTGACT 59.507 45.455 24.00 9.05 0.00 3.41
11 12 2.493278 AGCCCATAACTTGCATGTTGAC 59.507 45.455 24.00 10.97 0.00 3.18
12 13 2.754552 GAGCCCATAACTTGCATGTTGA 59.245 45.455 24.00 11.18 0.00 3.18
13 14 2.492881 TGAGCCCATAACTTGCATGTTG 59.507 45.455 24.00 11.75 0.00 3.33
14 15 2.806434 TGAGCCCATAACTTGCATGTT 58.194 42.857 20.30 20.30 0.00 2.71
15 16 2.512692 TGAGCCCATAACTTGCATGT 57.487 45.000 0.00 0.00 0.00 3.21
16 17 2.953648 TCATGAGCCCATAACTTGCATG 59.046 45.455 0.00 0.00 34.52 4.06
17 18 3.301794 TCATGAGCCCATAACTTGCAT 57.698 42.857 0.00 0.00 0.00 3.96
18 19 2.804986 TCATGAGCCCATAACTTGCA 57.195 45.000 0.00 0.00 0.00 4.08
19 20 5.065914 TCTTATCATGAGCCCATAACTTGC 58.934 41.667 0.09 0.00 0.00 4.01
20 21 5.704515 CCTCTTATCATGAGCCCATAACTTG 59.295 44.000 0.09 0.00 0.00 3.16
21 22 5.370880 ACCTCTTATCATGAGCCCATAACTT 59.629 40.000 0.09 0.00 0.00 2.66
22 23 4.910304 ACCTCTTATCATGAGCCCATAACT 59.090 41.667 0.09 0.00 0.00 2.24
23 24 5.234466 ACCTCTTATCATGAGCCCATAAC 57.766 43.478 0.09 0.00 0.00 1.89
24 25 5.456619 CCAACCTCTTATCATGAGCCCATAA 60.457 44.000 0.09 0.00 0.00 1.90
25 26 4.042062 CCAACCTCTTATCATGAGCCCATA 59.958 45.833 0.09 0.00 0.00 2.74
26 27 3.181436 CCAACCTCTTATCATGAGCCCAT 60.181 47.826 0.09 0.00 0.00 4.00
27 28 2.173356 CCAACCTCTTATCATGAGCCCA 59.827 50.000 0.09 0.00 0.00 5.36
28 29 2.856222 CCAACCTCTTATCATGAGCCC 58.144 52.381 0.09 0.00 0.00 5.19
29 30 2.158696 AGCCAACCTCTTATCATGAGCC 60.159 50.000 0.09 0.00 0.00 4.70
30 31 3.205784 AGCCAACCTCTTATCATGAGC 57.794 47.619 0.09 0.00 0.00 4.26
31 32 3.314635 GCAAGCCAACCTCTTATCATGAG 59.685 47.826 0.09 0.00 0.00 2.90
32 33 3.282021 GCAAGCCAACCTCTTATCATGA 58.718 45.455 0.00 0.00 0.00 3.07
33 34 2.360165 GGCAAGCCAACCTCTTATCATG 59.640 50.000 6.14 0.00 35.81 3.07
34 35 2.243221 AGGCAAGCCAACCTCTTATCAT 59.757 45.455 14.40 0.00 38.92 2.45
35 36 1.635487 AGGCAAGCCAACCTCTTATCA 59.365 47.619 14.40 0.00 38.92 2.15
36 37 2.019984 CAGGCAAGCCAACCTCTTATC 58.980 52.381 14.40 0.00 38.92 1.75
37 38 1.341383 CCAGGCAAGCCAACCTCTTAT 60.341 52.381 14.40 0.00 38.92 1.73
38 39 0.038166 CCAGGCAAGCCAACCTCTTA 59.962 55.000 14.40 0.00 38.92 2.10
39 40 1.228675 CCAGGCAAGCCAACCTCTT 60.229 57.895 14.40 0.00 38.92 2.85
40 41 2.437897 CCAGGCAAGCCAACCTCT 59.562 61.111 14.40 0.00 38.92 3.69
41 42 2.677875 CCCAGGCAAGCCAACCTC 60.678 66.667 14.40 0.00 38.92 3.85
42 43 4.305956 CCCCAGGCAAGCCAACCT 62.306 66.667 14.40 0.00 38.92 3.50
44 45 4.621087 ACCCCCAGGCAAGCCAAC 62.621 66.667 14.40 0.00 38.92 3.77
45 46 4.299796 GACCCCCAGGCAAGCCAA 62.300 66.667 14.40 0.00 38.92 4.52
47 48 4.299796 TTGACCCCCAGGCAAGCC 62.300 66.667 2.02 2.02 36.11 4.35
48 49 2.677875 CTTGACCCCCAGGCAAGC 60.678 66.667 0.00 0.00 39.09 4.01
49 50 1.867595 ATCCTTGACCCCCAGGCAAG 61.868 60.000 1.12 1.12 42.34 4.01
50 51 1.442886 AATCCTTGACCCCCAGGCAA 61.443 55.000 0.00 0.00 36.11 4.52
51 52 0.551377 TAATCCTTGACCCCCAGGCA 60.551 55.000 0.00 0.00 36.11 4.75
52 53 0.106669 GTAATCCTTGACCCCCAGGC 60.107 60.000 0.00 0.00 36.11 4.85
53 54 1.490910 GAGTAATCCTTGACCCCCAGG 59.509 57.143 0.00 0.00 40.04 4.45
54 55 1.490910 GGAGTAATCCTTGACCCCCAG 59.509 57.143 0.88 0.00 0.00 4.45
55 56 1.591768 GGAGTAATCCTTGACCCCCA 58.408 55.000 0.88 0.00 0.00 4.96
56 57 0.468648 CGGAGTAATCCTTGACCCCC 59.531 60.000 7.75 0.00 0.00 5.40
57 58 0.468648 CCGGAGTAATCCTTGACCCC 59.531 60.000 7.75 0.00 0.00 4.95
58 59 1.492764 TCCGGAGTAATCCTTGACCC 58.507 55.000 7.75 0.00 0.00 4.46
59 60 3.622166 TTTCCGGAGTAATCCTTGACC 57.378 47.619 3.34 0.00 0.00 4.02
60 61 5.001874 ACTTTTTCCGGAGTAATCCTTGAC 58.998 41.667 3.34 0.00 0.00 3.18
61 62 5.001232 CACTTTTTCCGGAGTAATCCTTGA 58.999 41.667 3.34 0.90 0.00 3.02
62 63 4.379499 GCACTTTTTCCGGAGTAATCCTTG 60.379 45.833 3.34 0.00 0.00 3.61
63 64 3.756963 GCACTTTTTCCGGAGTAATCCTT 59.243 43.478 3.34 0.00 0.00 3.36
64 65 3.344515 GCACTTTTTCCGGAGTAATCCT 58.655 45.455 3.34 0.00 0.00 3.24
65 66 2.095372 CGCACTTTTTCCGGAGTAATCC 59.905 50.000 3.34 0.00 0.00 3.01
66 67 2.095372 CCGCACTTTTTCCGGAGTAATC 59.905 50.000 3.34 0.00 44.55 1.75
67 68 2.081462 CCGCACTTTTTCCGGAGTAAT 58.919 47.619 3.34 0.00 44.55 1.89
68 69 1.070445 TCCGCACTTTTTCCGGAGTAA 59.930 47.619 3.34 0.00 45.30 2.24
69 70 0.680618 TCCGCACTTTTTCCGGAGTA 59.319 50.000 3.34 0.00 45.30 2.59
70 71 1.448497 TCCGCACTTTTTCCGGAGT 59.552 52.632 3.34 0.00 45.30 3.85
71 72 4.371975 TCCGCACTTTTTCCGGAG 57.628 55.556 3.34 0.00 45.30 4.63
73 74 1.082366 CGTTCCGCACTTTTTCCGG 60.082 57.895 0.00 0.00 43.21 5.14
74 75 0.515564 ATCGTTCCGCACTTTTTCCG 59.484 50.000 0.00 0.00 0.00 4.30
75 76 1.463528 CGATCGTTCCGCACTTTTTCC 60.464 52.381 7.03 0.00 0.00 3.13
76 77 1.865725 CGATCGTTCCGCACTTTTTC 58.134 50.000 7.03 0.00 0.00 2.29
85 86 0.870307 ATCTTTCCGCGATCGTTCCG 60.870 55.000 17.81 11.67 0.00 4.30
86 87 1.287425 AATCTTTCCGCGATCGTTCC 58.713 50.000 17.81 0.00 0.00 3.62
87 88 3.385079 AAAATCTTTCCGCGATCGTTC 57.615 42.857 17.81 0.00 0.00 3.95
88 89 3.723835 CGAAAAATCTTTCCGCGATCGTT 60.724 43.478 17.81 0.00 38.17 3.85
89 90 2.222729 CGAAAAATCTTTCCGCGATCGT 60.223 45.455 17.81 0.00 38.17 3.73
90 91 2.354196 CGAAAAATCTTTCCGCGATCG 58.646 47.619 11.69 11.69 38.17 3.69
91 92 2.350498 TCCGAAAAATCTTTCCGCGATC 59.650 45.455 8.23 0.00 38.17 3.69
92 93 2.352388 TCCGAAAAATCTTTCCGCGAT 58.648 42.857 8.23 0.00 38.17 4.58
93 94 1.798283 TCCGAAAAATCTTTCCGCGA 58.202 45.000 8.23 0.00 38.17 5.87
94 95 2.604969 TTCCGAAAAATCTTTCCGCG 57.395 45.000 0.00 0.00 38.17 6.46
95 96 3.634283 TGTTTCCGAAAAATCTTTCCGC 58.366 40.909 0.00 0.00 38.17 5.54
96 97 4.855531 ACTGTTTCCGAAAAATCTTTCCG 58.144 39.130 0.00 0.00 38.17 4.30
97 98 6.504398 AGAACTGTTTCCGAAAAATCTTTCC 58.496 36.000 0.00 0.00 38.17 3.13
98 99 7.418408 AGAGAACTGTTTCCGAAAAATCTTTC 58.582 34.615 0.00 0.00 38.06 2.62
99 100 7.283354 AGAGAGAACTGTTTCCGAAAAATCTTT 59.717 33.333 0.00 0.00 31.28 2.52
100 101 6.768381 AGAGAGAACTGTTTCCGAAAAATCTT 59.232 34.615 0.00 0.00 31.28 2.40
101 102 6.292150 AGAGAGAACTGTTTCCGAAAAATCT 58.708 36.000 0.00 0.00 31.28 2.40
102 103 6.546972 AGAGAGAACTGTTTCCGAAAAATC 57.453 37.500 0.00 0.00 31.28 2.17
103 104 5.177696 CGAGAGAGAACTGTTTCCGAAAAAT 59.822 40.000 0.00 0.00 31.28 1.82
104 105 4.506654 CGAGAGAGAACTGTTTCCGAAAAA 59.493 41.667 0.00 0.00 31.28 1.94
105 106 4.049186 CGAGAGAGAACTGTTTCCGAAAA 58.951 43.478 0.00 0.00 31.28 2.29
106 107 3.552273 CCGAGAGAGAACTGTTTCCGAAA 60.552 47.826 0.00 0.00 31.28 3.46
107 108 2.030185 CCGAGAGAGAACTGTTTCCGAA 60.030 50.000 0.00 0.00 31.28 4.30
108 109 1.540267 CCGAGAGAGAACTGTTTCCGA 59.460 52.381 0.00 0.00 31.28 4.55
109 110 1.540267 TCCGAGAGAGAACTGTTTCCG 59.460 52.381 0.00 0.00 31.28 4.30
110 111 3.516615 CATCCGAGAGAGAACTGTTTCC 58.483 50.000 0.00 0.00 31.28 3.13
111 112 3.516615 CCATCCGAGAGAGAACTGTTTC 58.483 50.000 0.00 0.00 0.00 2.78
112 113 2.234908 CCCATCCGAGAGAGAACTGTTT 59.765 50.000 0.00 0.00 0.00 2.83
113 114 1.827969 CCCATCCGAGAGAGAACTGTT 59.172 52.381 0.00 0.00 0.00 3.16
114 115 1.479709 CCCATCCGAGAGAGAACTGT 58.520 55.000 0.00 0.00 0.00 3.55
115 116 0.749649 CCCCATCCGAGAGAGAACTG 59.250 60.000 0.00 0.00 0.00 3.16
116 117 1.045911 GCCCCATCCGAGAGAGAACT 61.046 60.000 0.00 0.00 0.00 3.01
117 118 1.045911 AGCCCCATCCGAGAGAGAAC 61.046 60.000 0.00 0.00 0.00 3.01
118 119 1.045350 CAGCCCCATCCGAGAGAGAA 61.045 60.000 0.00 0.00 0.00 2.87
119 120 1.456518 CAGCCCCATCCGAGAGAGA 60.457 63.158 0.00 0.00 0.00 3.10
120 121 1.333636 AACAGCCCCATCCGAGAGAG 61.334 60.000 0.00 0.00 0.00 3.20
121 122 0.909610 AAACAGCCCCATCCGAGAGA 60.910 55.000 0.00 0.00 0.00 3.10
122 123 0.830648 TAAACAGCCCCATCCGAGAG 59.169 55.000 0.00 0.00 0.00 3.20
123 124 0.539986 GTAAACAGCCCCATCCGAGA 59.460 55.000 0.00 0.00 0.00 4.04
124 125 0.810031 CGTAAACAGCCCCATCCGAG 60.810 60.000 0.00 0.00 0.00 4.63
125 126 1.219664 CGTAAACAGCCCCATCCGA 59.780 57.895 0.00 0.00 0.00 4.55
126 127 1.817941 CCGTAAACAGCCCCATCCG 60.818 63.158 0.00 0.00 0.00 4.18
127 128 1.453197 CCCGTAAACAGCCCCATCC 60.453 63.158 0.00 0.00 0.00 3.51
128 129 2.119029 GCCCGTAAACAGCCCCATC 61.119 63.158 0.00 0.00 0.00 3.51
129 130 2.044352 GCCCGTAAACAGCCCCAT 60.044 61.111 0.00 0.00 0.00 4.00
130 131 3.134703 TTGCCCGTAAACAGCCCCA 62.135 57.895 0.00 0.00 0.00 4.96
131 132 2.282603 TTGCCCGTAAACAGCCCC 60.283 61.111 0.00 0.00 0.00 5.80
132 133 2.340328 CCTTGCCCGTAAACAGCCC 61.340 63.158 0.00 0.00 0.00 5.19
133 134 2.340328 CCCTTGCCCGTAAACAGCC 61.340 63.158 0.00 0.00 0.00 4.85
134 135 2.989881 GCCCTTGCCCGTAAACAGC 61.990 63.158 0.00 0.00 0.00 4.40
135 136 1.175983 TTGCCCTTGCCCGTAAACAG 61.176 55.000 0.00 0.00 36.33 3.16
136 137 0.755698 TTTGCCCTTGCCCGTAAACA 60.756 50.000 0.00 0.00 36.33 2.83
137 138 0.038618 CTTTGCCCTTGCCCGTAAAC 60.039 55.000 0.00 0.00 36.33 2.01
138 139 0.468400 ACTTTGCCCTTGCCCGTAAA 60.468 50.000 0.00 0.00 36.33 2.01
139 140 1.151908 ACTTTGCCCTTGCCCGTAA 59.848 52.632 0.00 0.00 36.33 3.18
140 141 1.602323 CACTTTGCCCTTGCCCGTA 60.602 57.895 0.00 0.00 36.33 4.02
141 142 2.912025 CACTTTGCCCTTGCCCGT 60.912 61.111 0.00 0.00 36.33 5.28
142 143 3.683937 CCACTTTGCCCTTGCCCG 61.684 66.667 0.00 0.00 36.33 6.13
143 144 2.524148 ACCACTTTGCCCTTGCCC 60.524 61.111 0.00 0.00 36.33 5.36
144 145 1.187567 ATGACCACTTTGCCCTTGCC 61.188 55.000 0.00 0.00 36.33 4.52
145 146 0.681175 AATGACCACTTTGCCCTTGC 59.319 50.000 0.00 0.00 38.26 4.01
146 147 3.181467 TGAAAATGACCACTTTGCCCTTG 60.181 43.478 0.00 0.00 0.00 3.61
147 148 3.037549 TGAAAATGACCACTTTGCCCTT 58.962 40.909 0.00 0.00 0.00 3.95
148 149 2.365293 GTGAAAATGACCACTTTGCCCT 59.635 45.455 0.00 0.00 0.00 5.19
149 150 2.365293 AGTGAAAATGACCACTTTGCCC 59.635 45.455 0.00 0.00 40.40 5.36
150 151 3.181476 ACAGTGAAAATGACCACTTTGCC 60.181 43.478 0.00 0.00 41.26 4.52
151 152 3.798337 CACAGTGAAAATGACCACTTTGC 59.202 43.478 0.00 0.00 41.26 3.68
152 153 4.799949 CACACAGTGAAAATGACCACTTTG 59.200 41.667 7.81 0.00 43.13 2.77
153 154 4.142182 CCACACAGTGAAAATGACCACTTT 60.142 41.667 7.81 0.00 41.26 2.66
154 155 3.381272 CCACACAGTGAAAATGACCACTT 59.619 43.478 7.81 0.00 41.26 3.16
155 156 2.951642 CCACACAGTGAAAATGACCACT 59.048 45.455 7.81 0.00 43.73 4.00
156 157 2.948979 TCCACACAGTGAAAATGACCAC 59.051 45.455 7.81 0.00 34.17 4.16
157 158 3.289407 TCCACACAGTGAAAATGACCA 57.711 42.857 7.81 0.00 34.17 4.02
158 159 4.142271 TGTTTCCACACAGTGAAAATGACC 60.142 41.667 7.81 0.00 34.17 4.02
159 160 4.992688 TGTTTCCACACAGTGAAAATGAC 58.007 39.130 7.81 0.00 34.17 3.06
160 161 5.850557 ATGTTTCCACACAGTGAAAATGA 57.149 34.783 7.81 0.00 35.03 2.57
161 162 7.866898 TCATTATGTTTCCACACAGTGAAAATG 59.133 33.333 7.81 0.00 35.03 2.32
162 163 7.950512 TCATTATGTTTCCACACAGTGAAAAT 58.049 30.769 7.81 0.00 35.03 1.82
163 164 7.340122 TCATTATGTTTCCACACAGTGAAAA 57.660 32.000 7.81 2.20 35.03 2.29
164 165 6.951062 TCATTATGTTTCCACACAGTGAAA 57.049 33.333 7.81 0.00 35.03 2.69
165 166 6.951062 TTCATTATGTTTCCACACAGTGAA 57.049 33.333 7.81 0.00 35.03 3.18
166 167 6.951062 TTTCATTATGTTTCCACACAGTGA 57.049 33.333 7.81 0.00 35.03 3.41
167 168 7.866898 TCATTTTCATTATGTTTCCACACAGTG 59.133 33.333 0.00 0.00 35.03 3.66
168 169 7.950512 TCATTTTCATTATGTTTCCACACAGT 58.049 30.769 0.00 0.00 35.03 3.55
169 170 8.991243 ATCATTTTCATTATGTTTCCACACAG 57.009 30.769 0.00 0.00 35.03 3.66
170 171 9.853555 GTATCATTTTCATTATGTTTCCACACA 57.146 29.630 0.00 0.00 35.03 3.72
171 172 9.301153 GGTATCATTTTCATTATGTTTCCACAC 57.699 33.333 0.00 0.00 35.03 3.82
172 173 9.029368 TGGTATCATTTTCATTATGTTTCCACA 57.971 29.630 0.00 0.00 37.31 4.17
173 174 9.868277 TTGGTATCATTTTCATTATGTTTCCAC 57.132 29.630 0.00 0.00 0.00 4.02
174 175 9.868277 GTTGGTATCATTTTCATTATGTTTCCA 57.132 29.630 0.00 0.00 0.00 3.53
175 176 9.019764 CGTTGGTATCATTTTCATTATGTTTCC 57.980 33.333 0.00 0.00 0.00 3.13
176 177 8.531530 GCGTTGGTATCATTTTCATTATGTTTC 58.468 33.333 0.00 0.00 0.00 2.78
177 178 8.031864 TGCGTTGGTATCATTTTCATTATGTTT 58.968 29.630 0.00 0.00 0.00 2.83
178 179 7.542890 TGCGTTGGTATCATTTTCATTATGTT 58.457 30.769 0.00 0.00 0.00 2.71
179 180 7.094508 TGCGTTGGTATCATTTTCATTATGT 57.905 32.000 0.00 0.00 0.00 2.29
180 181 7.984002 TTGCGTTGGTATCATTTTCATTATG 57.016 32.000 0.00 0.00 0.00 1.90
181 182 8.465999 TCTTTGCGTTGGTATCATTTTCATTAT 58.534 29.630 0.00 0.00 0.00 1.28
182 183 7.821652 TCTTTGCGTTGGTATCATTTTCATTA 58.178 30.769 0.00 0.00 0.00 1.90
183 184 6.686630 TCTTTGCGTTGGTATCATTTTCATT 58.313 32.000 0.00 0.00 0.00 2.57
184 185 6.071952 ACTCTTTGCGTTGGTATCATTTTCAT 60.072 34.615 0.00 0.00 0.00 2.57
185 186 5.240623 ACTCTTTGCGTTGGTATCATTTTCA 59.759 36.000 0.00 0.00 0.00 2.69
186 187 5.699839 ACTCTTTGCGTTGGTATCATTTTC 58.300 37.500 0.00 0.00 0.00 2.29
187 188 5.705609 ACTCTTTGCGTTGGTATCATTTT 57.294 34.783 0.00 0.00 0.00 1.82
188 189 5.705609 AACTCTTTGCGTTGGTATCATTT 57.294 34.783 0.00 0.00 0.00 2.32
189 190 5.240623 TCAAACTCTTTGCGTTGGTATCATT 59.759 36.000 0.00 0.00 40.43 2.57
190 191 4.759693 TCAAACTCTTTGCGTTGGTATCAT 59.240 37.500 0.00 0.00 40.43 2.45
191 192 4.024387 GTCAAACTCTTTGCGTTGGTATCA 60.024 41.667 0.00 0.00 40.43 2.15
192 193 4.464112 GTCAAACTCTTTGCGTTGGTATC 58.536 43.478 0.00 0.00 40.43 2.24
193 194 3.059188 CGTCAAACTCTTTGCGTTGGTAT 60.059 43.478 0.00 0.00 40.43 2.73
194 195 2.285756 CGTCAAACTCTTTGCGTTGGTA 59.714 45.455 0.00 0.00 40.43 3.25
195 196 1.063469 CGTCAAACTCTTTGCGTTGGT 59.937 47.619 0.00 0.00 40.43 3.67
196 197 1.329292 TCGTCAAACTCTTTGCGTTGG 59.671 47.619 9.64 0.00 40.43 3.77
197 198 2.284150 TCTCGTCAAACTCTTTGCGTTG 59.716 45.455 9.64 0.00 40.43 4.10
198 199 2.546778 TCTCGTCAAACTCTTTGCGTT 58.453 42.857 9.64 0.00 40.43 4.84
199 200 2.218953 TCTCGTCAAACTCTTTGCGT 57.781 45.000 9.64 0.00 40.43 5.24
200 201 2.731451 TCATCTCGTCAAACTCTTTGCG 59.269 45.455 5.66 5.66 40.43 4.85
201 202 4.449068 TCTTCATCTCGTCAAACTCTTTGC 59.551 41.667 0.00 0.00 40.43 3.68
202 203 5.387855 CGTCTTCATCTCGTCAAACTCTTTG 60.388 44.000 0.00 0.00 41.96 2.77
203 204 4.681942 CGTCTTCATCTCGTCAAACTCTTT 59.318 41.667 0.00 0.00 0.00 2.52
204 205 4.230657 CGTCTTCATCTCGTCAAACTCTT 58.769 43.478 0.00 0.00 0.00 2.85
205 206 3.827625 CGTCTTCATCTCGTCAAACTCT 58.172 45.455 0.00 0.00 0.00 3.24
206 207 2.342948 GCGTCTTCATCTCGTCAAACTC 59.657 50.000 0.00 0.00 0.00 3.01
207 208 2.329379 GCGTCTTCATCTCGTCAAACT 58.671 47.619 0.00 0.00 0.00 2.66
208 209 1.057847 CGCGTCTTCATCTCGTCAAAC 59.942 52.381 0.00 0.00 0.00 2.93
209 210 1.068816 TCGCGTCTTCATCTCGTCAAA 60.069 47.619 5.77 0.00 0.00 2.69
210 211 0.519961 TCGCGTCTTCATCTCGTCAA 59.480 50.000 5.77 0.00 0.00 3.18
211 212 0.097150 CTCGCGTCTTCATCTCGTCA 59.903 55.000 5.77 0.00 0.00 4.35
212 213 1.197368 GCTCGCGTCTTCATCTCGTC 61.197 60.000 5.77 0.00 0.00 4.20
213 214 1.226435 GCTCGCGTCTTCATCTCGT 60.226 57.895 5.77 0.00 0.00 4.18
214 215 2.282361 CGCTCGCGTCTTCATCTCG 61.282 63.158 5.77 0.00 34.35 4.04
215 216 3.594762 CGCTCGCGTCTTCATCTC 58.405 61.111 5.77 0.00 34.35 2.75
225 226 2.389143 GTAAAACCGACGCTCGCG 59.611 61.111 10.06 10.06 46.03 5.87
226 227 1.287041 AAGGTAAAACCGACGCTCGC 61.287 55.000 0.00 0.00 44.90 5.03
227 228 1.981254 TAAGGTAAAACCGACGCTCG 58.019 50.000 0.00 1.17 44.90 5.03
228 229 3.000376 CGATTAAGGTAAAACCGACGCTC 60.000 47.826 0.00 0.00 44.90 5.03
229 230 2.925563 CGATTAAGGTAAAACCGACGCT 59.074 45.455 0.00 0.00 44.90 5.07
230 231 2.029606 CCGATTAAGGTAAAACCGACGC 59.970 50.000 0.00 0.00 44.90 5.19
231 232 3.510719 TCCGATTAAGGTAAAACCGACG 58.489 45.455 0.00 0.00 44.90 5.12
232 233 6.426980 AAATCCGATTAAGGTAAAACCGAC 57.573 37.500 0.00 0.00 44.90 4.79
233 234 6.255453 CGTAAATCCGATTAAGGTAAAACCGA 59.745 38.462 0.00 0.00 44.90 4.69
234 235 6.413269 CGTAAATCCGATTAAGGTAAAACCG 58.587 40.000 0.00 0.00 44.90 4.44
235 236 6.316140 ACCGTAAATCCGATTAAGGTAAAACC 59.684 38.462 11.27 0.00 43.08 3.27
236 237 7.307493 ACCGTAAATCCGATTAAGGTAAAAC 57.693 36.000 11.27 0.00 43.08 2.43
237 238 7.390162 ACAACCGTAAATCCGATTAAGGTAAAA 59.610 33.333 12.62 0.00 43.77 1.52
238 239 6.878389 ACAACCGTAAATCCGATTAAGGTAAA 59.122 34.615 12.62 0.00 43.77 2.01
239 240 6.405538 ACAACCGTAAATCCGATTAAGGTAA 58.594 36.000 12.62 0.00 43.77 2.85
240 241 5.976458 ACAACCGTAAATCCGATTAAGGTA 58.024 37.500 12.62 0.00 43.77 3.08
241 242 4.835678 ACAACCGTAAATCCGATTAAGGT 58.164 39.130 8.46 8.46 45.60 3.50
242 243 4.026310 CGACAACCGTAAATCCGATTAAGG 60.026 45.833 0.00 1.56 39.44 2.69
243 244 4.799949 TCGACAACCGTAAATCCGATTAAG 59.200 41.667 0.00 0.00 39.75 1.85
244 245 4.742417 TCGACAACCGTAAATCCGATTAA 58.258 39.130 0.00 0.00 39.75 1.40
245 246 4.096231 TCTCGACAACCGTAAATCCGATTA 59.904 41.667 0.00 0.00 39.75 1.75
246 247 3.119388 TCTCGACAACCGTAAATCCGATT 60.119 43.478 0.00 0.00 39.75 3.34
247 248 2.424601 TCTCGACAACCGTAAATCCGAT 59.575 45.455 0.00 0.00 39.75 4.18
248 249 1.811965 TCTCGACAACCGTAAATCCGA 59.188 47.619 0.00 0.00 39.75 4.55
249 250 2.267188 TCTCGACAACCGTAAATCCG 57.733 50.000 0.00 0.00 39.75 4.18
250 251 5.526115 TCATATCTCGACAACCGTAAATCC 58.474 41.667 0.00 0.00 39.75 3.01
251 252 6.144080 CCTTCATATCTCGACAACCGTAAATC 59.856 42.308 0.00 0.00 39.75 2.17
252 253 5.983720 CCTTCATATCTCGACAACCGTAAAT 59.016 40.000 0.00 0.00 39.75 1.40
253 254 5.345702 CCTTCATATCTCGACAACCGTAAA 58.654 41.667 0.00 0.00 39.75 2.01
254 255 4.202080 CCCTTCATATCTCGACAACCGTAA 60.202 45.833 0.00 0.00 39.75 3.18
255 256 3.317149 CCCTTCATATCTCGACAACCGTA 59.683 47.826 0.00 0.00 39.75 4.02
256 257 2.100916 CCCTTCATATCTCGACAACCGT 59.899 50.000 0.00 0.00 39.75 4.83
257 258 2.100916 ACCCTTCATATCTCGACAACCG 59.899 50.000 0.00 0.00 40.25 4.44
258 259 3.821421 ACCCTTCATATCTCGACAACC 57.179 47.619 0.00 0.00 0.00 3.77
259 260 6.817140 ACTTTAACCCTTCATATCTCGACAAC 59.183 38.462 0.00 0.00 0.00 3.32
260 261 6.942976 ACTTTAACCCTTCATATCTCGACAA 58.057 36.000 0.00 0.00 0.00 3.18
261 262 6.540438 ACTTTAACCCTTCATATCTCGACA 57.460 37.500 0.00 0.00 0.00 4.35
262 263 7.039882 TGAACTTTAACCCTTCATATCTCGAC 58.960 38.462 0.00 0.00 0.00 4.20
263 264 7.177832 TGAACTTTAACCCTTCATATCTCGA 57.822 36.000 0.00 0.00 0.00 4.04
264 265 7.011482 CCTTGAACTTTAACCCTTCATATCTCG 59.989 40.741 0.00 0.00 0.00 4.04
265 266 8.047310 TCCTTGAACTTTAACCCTTCATATCTC 58.953 37.037 0.00 0.00 0.00 2.75
266 267 7.829706 GTCCTTGAACTTTAACCCTTCATATCT 59.170 37.037 0.00 0.00 0.00 1.98
267 268 7.067129 GGTCCTTGAACTTTAACCCTTCATATC 59.933 40.741 0.00 0.00 0.00 1.63
268 269 6.890268 GGTCCTTGAACTTTAACCCTTCATAT 59.110 38.462 0.00 0.00 0.00 1.78
269 270 6.045106 AGGTCCTTGAACTTTAACCCTTCATA 59.955 38.462 0.00 0.00 0.00 2.15
270 271 5.077564 GGTCCTTGAACTTTAACCCTTCAT 58.922 41.667 0.00 0.00 0.00 2.57
271 272 4.167307 AGGTCCTTGAACTTTAACCCTTCA 59.833 41.667 0.00 0.00 0.00 3.02
272 273 4.726583 AGGTCCTTGAACTTTAACCCTTC 58.273 43.478 0.00 0.00 0.00 3.46
273 274 4.808767 AGGTCCTTGAACTTTAACCCTT 57.191 40.909 0.00 0.00 0.00 3.95
274 275 5.338137 CGATAGGTCCTTGAACTTTAACCCT 60.338 44.000 0.00 0.00 29.72 4.34
275 276 4.874396 CGATAGGTCCTTGAACTTTAACCC 59.126 45.833 0.00 0.00 29.72 4.11
293 294 5.295431 TGCTGAAAACAATTCACCGATAG 57.705 39.130 0.00 0.00 0.00 2.08
294 295 5.697473 TTGCTGAAAACAATTCACCGATA 57.303 34.783 0.00 0.00 0.00 2.92
295 296 4.582701 TTGCTGAAAACAATTCACCGAT 57.417 36.364 0.00 0.00 0.00 4.18
296 297 4.109050 GTTTGCTGAAAACAATTCACCGA 58.891 39.130 6.37 0.00 46.30 4.69
297 298 4.436365 GTTTGCTGAAAACAATTCACCG 57.564 40.909 6.37 0.00 46.30 4.94
307 308 1.040339 ACGGGCCTGTTTGCTGAAAA 61.040 50.000 12.85 0.00 0.00 2.29
308 309 1.454847 ACGGGCCTGTTTGCTGAAA 60.455 52.632 12.85 0.00 0.00 2.69
309 310 2.192861 CACGGGCCTGTTTGCTGAA 61.193 57.895 16.73 0.00 0.00 3.02
310 311 2.594303 CACGGGCCTGTTTGCTGA 60.594 61.111 16.73 0.00 0.00 4.26
311 312 3.673484 CCACGGGCCTGTTTGCTG 61.673 66.667 16.73 2.84 0.00 4.41
312 313 3.850098 CTCCACGGGCCTGTTTGCT 62.850 63.158 16.73 0.00 0.00 3.91
313 314 3.365265 CTCCACGGGCCTGTTTGC 61.365 66.667 16.73 0.00 0.00 3.68
314 315 2.672996 CCTCCACGGGCCTGTTTG 60.673 66.667 16.73 9.77 0.00 2.93
315 316 2.002018 TTTCCTCCACGGGCCTGTTT 62.002 55.000 16.73 0.00 0.00 2.83
316 317 2.002018 TTTTCCTCCACGGGCCTGTT 62.002 55.000 16.73 0.00 0.00 3.16
317 318 2.002018 TTTTTCCTCCACGGGCCTGT 62.002 55.000 12.85 12.85 0.00 4.00
318 319 1.228429 TTTTTCCTCCACGGGCCTG 60.228 57.895 11.02 11.02 0.00 4.85
319 320 1.228459 GTTTTTCCTCCACGGGCCT 60.228 57.895 0.84 0.00 0.00 5.19
320 321 1.228459 AGTTTTTCCTCCACGGGCC 60.228 57.895 0.00 0.00 0.00 5.80
321 322 0.822121 ACAGTTTTTCCTCCACGGGC 60.822 55.000 0.00 0.00 0.00 6.13
322 323 0.951558 CACAGTTTTTCCTCCACGGG 59.048 55.000 0.00 0.00 0.00 5.28
323 324 1.675552 ACACAGTTTTTCCTCCACGG 58.324 50.000 0.00 0.00 0.00 4.94
324 325 3.250040 CCTAACACAGTTTTTCCTCCACG 59.750 47.826 0.00 0.00 0.00 4.94
325 326 4.457466 TCCTAACACAGTTTTTCCTCCAC 58.543 43.478 0.00 0.00 0.00 4.02
326 327 4.781775 TCCTAACACAGTTTTTCCTCCA 57.218 40.909 0.00 0.00 0.00 3.86
327 328 7.754851 TTATTCCTAACACAGTTTTTCCTCC 57.245 36.000 0.00 0.00 0.00 4.30
382 383 3.994392 GACACACACAACCGTCTAATGAT 59.006 43.478 0.00 0.00 0.00 2.45
398 399 2.048127 GAGAGGCGGTGGACACAC 60.048 66.667 4.69 0.00 46.97 3.82
399 400 3.311110 GGAGAGGCGGTGGACACA 61.311 66.667 4.69 0.00 0.00 3.72
469 470 3.334691 TCTCAACAGTCGCCAATTAAGG 58.665 45.455 0.00 0.00 0.00 2.69
558 559 1.252015 GTTACGAGCGTGCTGATAACG 59.748 52.381 5.69 0.00 43.81 3.18
579 580 0.674581 CTGCGGCCAAATCACTCTCA 60.675 55.000 2.24 0.00 0.00 3.27
623 624 4.200283 CGAGAGAGCCGCCTCACC 62.200 72.222 0.00 0.00 40.68 4.02
678 679 2.583441 CCCGAGGACTCTGTTGCCA 61.583 63.158 0.00 0.00 0.00 4.92
680 681 2.435059 GCCCGAGGACTCTGTTGC 60.435 66.667 0.00 0.00 0.00 4.17
705 706 0.392998 GGCGTCCATGGTCTGACATT 60.393 55.000 12.58 0.00 0.00 2.71
932 934 6.637657 CCCTAGAGGTTAGTGTAACGAAATT 58.362 40.000 0.00 0.00 45.86 1.82
942 944 2.032620 ACGATGCCCTAGAGGTTAGTG 58.967 52.381 0.00 0.00 38.26 2.74
1037 1039 1.191489 TGAAGGATGTCGCCACTCCA 61.191 55.000 3.60 0.00 0.00 3.86
1111 1113 2.507944 GAGTGCATCCTCCGCCAT 59.492 61.111 0.00 0.00 0.00 4.40
1130 1132 1.747355 CATCGAAAAAGATGCAGGCCT 59.253 47.619 0.00 0.00 41.09 5.19
1329 1331 4.947147 GGCAGACCGGTGGTTGCA 62.947 66.667 26.97 0.00 39.56 4.08
1381 1384 1.518572 CTTATCCCGTGCGAGCGTT 60.519 57.895 0.00 0.00 0.00 4.84
1409 1421 6.217487 TCCAAAGAAGATAAGATCCCCAAAGA 59.783 38.462 0.00 0.00 0.00 2.52
1410 1422 6.426587 TCCAAAGAAGATAAGATCCCCAAAG 58.573 40.000 0.00 0.00 0.00 2.77
1411 1423 6.401537 TCCAAAGAAGATAAGATCCCCAAA 57.598 37.500 0.00 0.00 0.00 3.28
1412 1424 6.401537 TTCCAAAGAAGATAAGATCCCCAA 57.598 37.500 0.00 0.00 0.00 4.12
1413 1425 6.596869 ATTCCAAAGAAGATAAGATCCCCA 57.403 37.500 0.00 0.00 34.86 4.96
1414 1426 7.904558 AAATTCCAAAGAAGATAAGATCCCC 57.095 36.000 0.00 0.00 34.86 4.81
1843 3396 7.888424 TGGTGGATAATCTGCAAATGATTATG 58.112 34.615 19.06 0.00 43.22 1.90
1844 3397 8.481492 TTGGTGGATAATCTGCAAATGATTAT 57.519 30.769 15.74 15.74 44.79 1.28
1845 3398 7.894753 TTGGTGGATAATCTGCAAATGATTA 57.105 32.000 8.76 8.76 39.67 1.75
1846 3399 6.795144 TTGGTGGATAATCTGCAAATGATT 57.205 33.333 5.18 5.18 37.78 2.57
1875 3428 7.441157 TGTTAAAGTGACAAGATGTAGACCTTG 59.559 37.037 0.00 0.00 43.84 3.61
1876 3429 7.506114 TGTTAAAGTGACAAGATGTAGACCTT 58.494 34.615 0.00 0.00 0.00 3.50
2303 3863 5.420725 TGTAGTGTTCATGCTTGGATACT 57.579 39.130 13.71 13.71 36.77 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.