Multiple sequence alignment - TraesCS6B01G224100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G224100 chr6B 100.000 5551 0 0 1 5551 338016591 338011041 0.000000e+00 10251.0
1 TraesCS6B01G224100 chr6B 89.685 698 63 6 4765 5458 100288223 100287531 0.000000e+00 881.0
2 TraesCS6B01G224100 chr6B 92.437 119 6 2 5433 5551 542305734 542305619 3.440000e-37 167.0
3 TraesCS6B01G224100 chr6B 94.444 90 3 2 3128 3217 53776451 53776364 2.700000e-28 137.0
4 TraesCS6B01G224100 chr6A 94.459 1498 44 16 1643 3128 346571985 346573455 0.000000e+00 2270.0
5 TraesCS6B01G224100 chr6A 95.405 1001 21 6 3228 4228 346573460 346574435 0.000000e+00 1570.0
6 TraesCS6B01G224100 chr6A 92.151 930 15 16 539 1443 346570858 346571754 0.000000e+00 1260.0
7 TraesCS6B01G224100 chr6A 94.323 458 17 4 4231 4681 346574482 346574937 0.000000e+00 693.0
8 TraesCS6B01G224100 chr6A 88.776 294 22 6 82 370 346570518 346570805 3.180000e-92 350.0
9 TraesCS6B01G224100 chr6A 94.595 111 4 2 5441 5551 175862755 175862647 2.660000e-38 171.0
10 TraesCS6B01G224100 chr6A 85.235 149 7 5 1433 1570 346571816 346571960 7.500000e-29 139.0
11 TraesCS6B01G224100 chr6A 88.172 93 8 3 3129 3219 20143085 20142994 2.110000e-19 108.0
12 TraesCS6B01G224100 chr6A 86.957 92 9 3 3129 3219 493557903 493557814 3.540000e-17 100.0
13 TraesCS6B01G224100 chr6D 98.161 1142 11 3 1992 3128 249994698 249993562 0.000000e+00 1984.0
14 TraesCS6B01G224100 chr6D 96.104 1001 14 6 3228 4228 249993557 249992582 0.000000e+00 1609.0
15 TraesCS6B01G224100 chr6D 93.901 869 13 12 579 1443 249996187 249995355 0.000000e+00 1275.0
16 TraesCS6B01G224100 chr6D 89.799 696 62 4 4765 5455 114310430 114311121 0.000000e+00 883.0
17 TraesCS6B01G224100 chr6D 92.340 470 15 5 4231 4681 249992532 249992065 0.000000e+00 649.0
18 TraesCS6B01G224100 chr6D 88.189 381 29 8 1 380 249996624 249996259 1.840000e-119 440.0
19 TraesCS6B01G224100 chr6D 94.118 255 6 5 1643 1893 249995113 249994864 4.060000e-101 379.0
20 TraesCS6B01G224100 chr6D 93.913 115 6 1 5438 5551 133304941 133304827 7.390000e-39 172.0
21 TraesCS6B01G224100 chr6D 91.304 92 5 3 3128 3219 13794942 13795030 7.550000e-24 122.0
22 TraesCS6B01G224100 chr6D 91.304 92 5 3 3128 3219 13798060 13798148 7.550000e-24 122.0
23 TraesCS6B01G224100 chr6D 91.304 92 5 3 3128 3219 13804867 13804955 7.550000e-24 122.0
24 TraesCS6B01G224100 chr6D 80.311 193 11 10 1433 1610 249995293 249995113 2.720000e-23 121.0
25 TraesCS6B01G224100 chr6D 84.946 93 11 2 3128 3220 468881942 468881853 2.130000e-14 91.6
26 TraesCS6B01G224100 chr6D 85.556 90 8 4 3130 3219 10743192 10743276 7.660000e-14 89.8
27 TraesCS6B01G224100 chr6D 83.871 93 9 4 3128 3219 294172503 294172590 3.560000e-12 84.2
28 TraesCS6B01G224100 chr6D 82.979 94 12 3 3129 3221 13673250 13673340 1.280000e-11 82.4
29 TraesCS6B01G224100 chr6D 85.333 75 6 4 3145 3217 158846431 158846502 7.710000e-09 73.1
30 TraesCS6B01G224100 chr6D 84.211 76 6 5 3145 3218 442298773 442298702 9.980000e-08 69.4
31 TraesCS6B01G224100 chr4D 90.844 699 55 5 4765 5458 484656482 484655788 0.000000e+00 928.0
32 TraesCS6B01G224100 chr4D 89.677 155 13 3 388 541 458556316 458556164 1.580000e-45 195.0
33 TraesCS6B01G224100 chr3D 87.975 790 74 11 4765 5551 526948445 526949216 0.000000e+00 913.0
34 TraesCS6B01G224100 chr3D 89.928 695 62 4 4765 5455 441449308 441448618 0.000000e+00 889.0
35 TraesCS6B01G224100 chr3D 89.922 129 8 5 5426 5551 404708 404582 1.600000e-35 161.0
36 TraesCS6B01G224100 chr3D 86.458 96 9 4 3128 3221 178651471 178651564 9.840000e-18 102.0
37 TraesCS6B01G224100 chr5D 89.957 697 63 3 4765 5458 550195388 550194696 0.000000e+00 893.0
38 TraesCS6B01G224100 chr5D 90.196 153 11 4 385 535 441116929 441117079 4.390000e-46 196.0
39 TraesCS6B01G224100 chr5D 93.103 116 6 2 5438 5551 219791192 219791307 9.560000e-38 169.0
40 TraesCS6B01G224100 chr5D 90.323 124 11 1 5428 5551 307989310 307989188 1.600000e-35 161.0
41 TraesCS6B01G224100 chr5D 92.135 89 5 2 3128 3216 423218029 423218115 2.100000e-24 124.0
42 TraesCS6B01G224100 chr2B 89.714 700 63 4 4765 5459 718958996 718958301 0.000000e+00 885.0
43 TraesCS6B01G224100 chr2B 88.384 198 23 0 1242 1439 482731107 482731304 7.190000e-59 239.0
44 TraesCS6B01G224100 chr5B 89.557 699 65 5 4765 5458 626707239 626706544 0.000000e+00 880.0
45 TraesCS6B01G224100 chr5B 90.132 152 12 3 385 534 84881205 84881055 1.580000e-45 195.0
46 TraesCS6B01G224100 chr5B 95.604 91 2 2 3128 3218 377695959 377695871 1.610000e-30 145.0
47 TraesCS6B01G224100 chr7D 89.527 697 65 4 4765 5458 238940404 238939713 0.000000e+00 876.0
48 TraesCS6B01G224100 chr7D 90.132 152 11 3 388 536 363491269 363491419 1.580000e-45 195.0
49 TraesCS6B01G224100 chr7D 89.610 154 10 3 388 535 64702542 64702389 2.040000e-44 191.0
50 TraesCS6B01G224100 chr7D 94.643 112 4 2 5440 5551 561076010 561076119 7.390000e-39 172.0
51 TraesCS6B01G224100 chr7D 94.048 84 3 2 3130 3212 4788484 4788402 5.840000e-25 126.0
52 TraesCS6B01G224100 chr2D 88.889 198 22 0 1242 1439 406950440 406950637 1.540000e-60 244.0
53 TraesCS6B01G224100 chr2D 88.199 161 13 4 387 541 207505319 207505159 2.640000e-43 187.0
54 TraesCS6B01G224100 chr2A 88.889 198 22 0 1242 1439 574971094 574971291 1.540000e-60 244.0
55 TraesCS6B01G224100 chr1A 90.625 160 13 2 378 535 257573193 257573352 1.570000e-50 211.0
56 TraesCS6B01G224100 chr1A 88.125 160 16 3 386 542 454742820 454742661 2.640000e-43 187.0
57 TraesCS6B01G224100 chr4A 90.667 150 12 2 388 535 382277142 382277291 1.220000e-46 198.0
58 TraesCS6B01G224100 chr3B 97.222 108 2 1 5445 5551 596632471 596632364 1.230000e-41 182.0
59 TraesCS6B01G224100 chr1B 94.444 90 3 2 3128 3217 563634507 563634594 2.700000e-28 137.0
60 TraesCS6B01G224100 chr1B 89.362 94 7 3 3128 3221 673567045 673566955 1.260000e-21 115.0
61 TraesCS6B01G224100 chr4B 92.391 92 5 2 3130 3221 535424499 535424588 4.510000e-26 130.0
62 TraesCS6B01G224100 chr4B 90.000 90 6 3 3128 3217 329806680 329806594 4.540000e-21 113.0
63 TraesCS6B01G224100 chr4B 90.000 90 6 3 3128 3217 639082627 639082713 4.540000e-21 113.0
64 TraesCS6B01G224100 chr7B 91.489 94 6 2 3128 3221 719132871 719132962 1.620000e-25 128.0
65 TraesCS6B01G224100 chr1D 85.567 97 9 5 3129 3224 135892358 135892450 4.580000e-16 97.1
66 TraesCS6B01G224100 chr1D 85.882 85 11 1 3128 3212 383691054 383691137 7.660000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G224100 chr6B 338011041 338016591 5550 True 10251.000000 10251 100.000000 1 5551 1 chr6B.!!$R3 5550
1 TraesCS6B01G224100 chr6B 100287531 100288223 692 True 881.000000 881 89.685000 4765 5458 1 chr6B.!!$R2 693
2 TraesCS6B01G224100 chr6A 346570518 346574937 4419 False 1047.000000 2270 91.724833 82 4681 6 chr6A.!!$F1 4599
3 TraesCS6B01G224100 chr6D 249992065 249996624 4559 True 922.428571 1984 91.874857 1 4681 7 chr6D.!!$R4 4680
4 TraesCS6B01G224100 chr6D 114310430 114311121 691 False 883.000000 883 89.799000 4765 5455 1 chr6D.!!$F4 690
5 TraesCS6B01G224100 chr4D 484655788 484656482 694 True 928.000000 928 90.844000 4765 5458 1 chr4D.!!$R2 693
6 TraesCS6B01G224100 chr3D 526948445 526949216 771 False 913.000000 913 87.975000 4765 5551 1 chr3D.!!$F2 786
7 TraesCS6B01G224100 chr3D 441448618 441449308 690 True 889.000000 889 89.928000 4765 5455 1 chr3D.!!$R2 690
8 TraesCS6B01G224100 chr5D 550194696 550195388 692 True 893.000000 893 89.957000 4765 5458 1 chr5D.!!$R2 693
9 TraesCS6B01G224100 chr2B 718958301 718958996 695 True 885.000000 885 89.714000 4765 5459 1 chr2B.!!$R1 694
10 TraesCS6B01G224100 chr5B 626706544 626707239 695 True 880.000000 880 89.557000 4765 5458 1 chr5B.!!$R3 693
11 TraesCS6B01G224100 chr7D 238939713 238940404 691 True 876.000000 876 89.527000 4765 5458 1 chr7D.!!$R3 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 335 0.249238 GGGTTGCGTGCATTGTGAAA 60.249 50.000 0.00 0.00 0.00 2.69 F
1008 1060 0.036765 TCCACGATTCCAGGAAACCG 60.037 55.000 19.91 19.91 0.00 4.44 F
1150 1202 1.060622 CTACCTGCTCGTCGTCGTC 59.939 63.158 1.33 0.00 38.33 4.20 F
2432 2703 1.153289 GTGCTGCTCATCGGACCAT 60.153 57.895 0.00 0.00 0.00 3.55 F
3189 3460 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1778 0.032815 GGATCTAGTTGAGCCGGAGC 59.967 60.000 5.05 0.0 41.78 4.70 R
2603 2874 1.378762 GCCAAAGTGCAGGTAGGGA 59.621 57.895 0.00 0.0 0.00 4.20 R
3149 3420 2.729194 TGCATACGGCCACCTTTTATT 58.271 42.857 2.24 0.0 43.89 1.40 R
3656 3927 0.739813 GTGTGGATAGTGGCACGGTC 60.740 60.000 12.71 13.7 0.00 4.79 R
4807 5146 0.179070 GCCAAAACTGGGCGGAAAAA 60.179 50.000 0.00 0.0 42.39 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.791555 CGAAATGCTGGTCGATGTTGC 60.792 52.381 0.00 0.00 39.64 4.17
94 95 1.226379 GGTCGATGTTGCATTGGCG 60.226 57.895 0.00 0.00 45.35 5.69
139 141 9.449719 CAAGTTACCAAATAGAGACTACCAAAT 57.550 33.333 0.00 0.00 0.00 2.32
147 149 8.821894 CAAATAGAGACTACCAAATACAAGCTC 58.178 37.037 0.00 0.00 0.00 4.09
164 166 0.252479 CTCAGGCAAGCATGTCTCCT 59.748 55.000 6.60 0.00 40.25 3.69
187 189 6.426328 CCTAAATGCATGCTACCAAACAAAAA 59.574 34.615 20.33 0.00 0.00 1.94
193 195 5.346822 GCATGCTACCAAACAAAAATCTCAG 59.653 40.000 11.37 0.00 0.00 3.35
255 261 7.544217 GGTTGTTTGATTACCAATAGCGATTTT 59.456 33.333 0.00 0.00 34.23 1.82
268 274 4.622701 AGCGATTTTTAGAGGTTGCATC 57.377 40.909 0.00 0.00 0.00 3.91
272 278 4.094294 CGATTTTTAGAGGTTGCATCGGAA 59.906 41.667 0.00 0.00 0.00 4.30
300 306 4.702131 AGATGCATGTTGTTTAGTTCCCTC 59.298 41.667 2.46 0.00 0.00 4.30
308 314 5.251932 TGTTGTTTAGTTCCCTCCATATGGA 59.748 40.000 23.17 23.17 43.08 3.41
309 315 6.069088 TGTTGTTTAGTTCCCTCCATATGGAT 60.069 38.462 24.73 11.42 44.46 3.41
310 316 5.940617 TGTTTAGTTCCCTCCATATGGATG 58.059 41.667 24.73 20.86 44.46 3.51
325 331 1.586028 GATGGGTTGCGTGCATTGT 59.414 52.632 0.00 0.00 0.00 2.71
329 335 0.249238 GGGTTGCGTGCATTGTGAAA 60.249 50.000 0.00 0.00 0.00 2.69
340 346 5.196825 GTGCATTGTGAAAAACAATTTCCG 58.803 37.500 1.05 0.00 44.97 4.30
341 347 4.210629 GCATTGTGAAAAACAATTTCCGC 58.789 39.130 1.05 0.00 44.97 5.54
344 350 4.377839 TGTGAAAAACAATTTCCGCTCA 57.622 36.364 0.00 0.00 35.24 4.26
380 386 2.019249 CATGCATCGTGATTGGGAGTT 58.981 47.619 0.00 0.00 0.00 3.01
385 391 3.438781 GCATCGTGATTGGGAGTTAACAA 59.561 43.478 8.61 0.00 0.00 2.83
386 392 4.671766 GCATCGTGATTGGGAGTTAACAAC 60.672 45.833 8.61 1.37 0.00 3.32
388 394 5.471556 TCGTGATTGGGAGTTAACAACTA 57.528 39.130 8.61 0.00 43.03 2.24
389 395 5.232463 TCGTGATTGGGAGTTAACAACTAC 58.768 41.667 8.61 0.00 43.03 2.73
390 396 5.011329 TCGTGATTGGGAGTTAACAACTACT 59.989 40.000 8.61 0.00 42.25 2.57
391 397 5.347907 CGTGATTGGGAGTTAACAACTACTC 59.652 44.000 8.61 2.89 42.25 2.59
398 404 5.678955 GAGTTAACAACTACTCCCTCCAT 57.321 43.478 8.61 0.00 43.03 3.41
399 405 6.051179 GAGTTAACAACTACTCCCTCCATT 57.949 41.667 8.61 0.00 43.03 3.16
400 406 6.051179 AGTTAACAACTACTCCCTCCATTC 57.949 41.667 8.61 0.00 40.69 2.67
401 407 5.045797 AGTTAACAACTACTCCCTCCATTCC 60.046 44.000 8.61 0.00 40.69 3.01
402 408 3.207044 ACAACTACTCCCTCCATTCCT 57.793 47.619 0.00 0.00 0.00 3.36
403 409 4.348020 ACAACTACTCCCTCCATTCCTA 57.652 45.455 0.00 0.00 0.00 2.94
404 410 4.695606 ACAACTACTCCCTCCATTCCTAA 58.304 43.478 0.00 0.00 0.00 2.69
405 411 5.098663 ACAACTACTCCCTCCATTCCTAAA 58.901 41.667 0.00 0.00 0.00 1.85
406 412 5.731678 ACAACTACTCCCTCCATTCCTAAAT 59.268 40.000 0.00 0.00 0.00 1.40
407 413 6.906901 ACAACTACTCCCTCCATTCCTAAATA 59.093 38.462 0.00 0.00 0.00 1.40
408 414 7.404980 ACAACTACTCCCTCCATTCCTAAATAA 59.595 37.037 0.00 0.00 0.00 1.40
409 415 8.440771 CAACTACTCCCTCCATTCCTAAATAAT 58.559 37.037 0.00 0.00 0.00 1.28
410 416 8.582891 ACTACTCCCTCCATTCCTAAATAATT 57.417 34.615 0.00 0.00 0.00 1.40
411 417 9.684702 ACTACTCCCTCCATTCCTAAATAATTA 57.315 33.333 0.00 0.00 0.00 1.40
445 451 9.825972 AAAGATTTCAACAAATGACTACATACG 57.174 29.630 0.00 0.00 37.92 3.06
446 452 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
447 453 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
448 454 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
449 455 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
450 456 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
451 457 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
452 458 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
453 459 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
454 460 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
455 461 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
456 462 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
457 463 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
458 464 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
459 465 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
460 466 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
461 467 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
462 468 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
463 469 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
464 470 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
465 471 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
466 472 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
467 473 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
468 474 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
501 507 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
503 509 9.642343 ATGTCTATATACATCCGTATGTGGTAT 57.358 33.333 3.56 5.25 45.99 2.73
504 510 9.117183 TGTCTATATACATCCGTATGTGGTATC 57.883 37.037 3.56 0.00 45.99 2.24
505 511 9.339850 GTCTATATACATCCGTATGTGGTATCT 57.660 37.037 3.56 0.00 45.99 1.98
506 512 9.557061 TCTATATACATCCGTATGTGGTATCTC 57.443 37.037 3.56 0.00 45.99 2.75
507 513 9.562408 CTATATACATCCGTATGTGGTATCTCT 57.438 37.037 3.56 0.00 45.99 3.10
509 515 9.916360 ATATACATCCGTATGTGGTATCTCTAA 57.084 33.333 3.56 0.00 45.99 2.10
510 516 6.971726 ACATCCGTATGTGGTATCTCTAAA 57.028 37.500 0.00 0.00 44.79 1.85
511 517 7.356089 ACATCCGTATGTGGTATCTCTAAAA 57.644 36.000 0.00 0.00 44.79 1.52
512 518 7.434492 ACATCCGTATGTGGTATCTCTAAAAG 58.566 38.462 0.00 0.00 44.79 2.27
513 519 7.287005 ACATCCGTATGTGGTATCTCTAAAAGA 59.713 37.037 0.00 0.00 44.79 2.52
514 520 7.035840 TCCGTATGTGGTATCTCTAAAAGAC 57.964 40.000 0.00 0.00 36.65 3.01
515 521 6.604396 TCCGTATGTGGTATCTCTAAAAGACA 59.396 38.462 0.00 0.00 36.65 3.41
516 522 7.123098 TCCGTATGTGGTATCTCTAAAAGACAA 59.877 37.037 0.00 0.00 36.65 3.18
517 523 7.762615 CCGTATGTGGTATCTCTAAAAGACAAA 59.237 37.037 0.00 0.00 36.65 2.83
518 524 9.314321 CGTATGTGGTATCTCTAAAAGACAAAT 57.686 33.333 0.00 0.00 36.65 2.32
533 539 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
570 597 6.090129 GTGACAACACACACAAGTTTACATT 58.910 36.000 0.00 0.00 45.32 2.71
576 603 8.369588 CAACACACACAAGTTTACATTAACAAC 58.630 33.333 0.00 0.00 0.00 3.32
577 604 6.743627 ACACACACAAGTTTACATTAACAACG 59.256 34.615 0.00 0.00 0.00 4.10
593 620 2.549282 CGCACACGTACCAGCAAC 59.451 61.111 0.00 0.00 33.53 4.17
605 647 4.084013 CGTACCAGCAACTAACAAGAAAGG 60.084 45.833 0.00 0.00 0.00 3.11
686 728 0.254462 GGAGAAAGGCCAAGAGGAGG 59.746 60.000 5.01 0.00 36.89 4.30
776 818 1.047002 CAAGCCAACCAACCAATCCA 58.953 50.000 0.00 0.00 0.00 3.41
794 836 6.777091 CCAATCCAAATATCCATAGACCACAA 59.223 38.462 0.00 0.00 0.00 3.33
835 881 3.464080 TCTCCTTCCCCAACCAAAACTAA 59.536 43.478 0.00 0.00 0.00 2.24
836 882 3.826729 CTCCTTCCCCAACCAAAACTAAG 59.173 47.826 0.00 0.00 0.00 2.18
837 883 3.464080 TCCTTCCCCAACCAAAACTAAGA 59.536 43.478 0.00 0.00 0.00 2.10
838 884 4.079096 TCCTTCCCCAACCAAAACTAAGAA 60.079 41.667 0.00 0.00 0.00 2.52
839 885 4.280929 CCTTCCCCAACCAAAACTAAGAAG 59.719 45.833 0.00 0.00 0.00 2.85
1008 1060 0.036765 TCCACGATTCCAGGAAACCG 60.037 55.000 19.91 19.91 0.00 4.44
1018 1070 2.183555 GGAAACCGTCGCCGATCT 59.816 61.111 0.00 0.00 35.63 2.75
1047 1099 1.444119 TTGTTCACCAGAGCGCCAAC 61.444 55.000 2.29 0.00 0.00 3.77
1084 1136 1.736681 GCTTCATGACAGCTCCTTGAC 59.263 52.381 17.40 0.00 34.15 3.18
1093 1145 2.039405 GCTCCTTGACCTGCTGCTG 61.039 63.158 0.00 0.00 0.00 4.41
1094 1146 2.033141 TCCTTGACCTGCTGCTGC 59.967 61.111 8.89 8.89 40.20 5.25
1095 1147 2.033757 CCTTGACCTGCTGCTGCT 59.966 61.111 17.00 0.00 40.48 4.24
1096 1148 2.333417 CCTTGACCTGCTGCTGCTG 61.333 63.158 17.00 15.58 40.48 4.41
1097 1149 2.979197 CTTGACCTGCTGCTGCTGC 61.979 63.158 22.51 22.51 40.48 5.25
1098 1150 3.486905 TTGACCTGCTGCTGCTGCT 62.487 57.895 27.67 11.62 40.48 4.24
1099 1151 3.432588 GACCTGCTGCTGCTGCTG 61.433 66.667 27.67 25.97 40.48 4.41
1148 1200 2.277373 GCTACCTGCTCGTCGTCG 60.277 66.667 0.00 0.00 38.95 5.12
1149 1201 3.036783 GCTACCTGCTCGTCGTCGT 62.037 63.158 1.33 0.00 38.95 4.34
1150 1202 1.060622 CTACCTGCTCGTCGTCGTC 59.939 63.158 1.33 0.00 38.33 4.20
1151 1203 2.613814 CTACCTGCTCGTCGTCGTCG 62.614 65.000 5.50 5.50 38.33 5.12
1152 1204 4.086178 CCTGCTCGTCGTCGTCGT 62.086 66.667 11.41 0.00 38.33 4.34
1153 1205 2.571096 CTGCTCGTCGTCGTCGTC 60.571 66.667 11.41 6.00 38.33 4.20
1496 1624 5.977821 TCCTCCTACATCTCTCACTCTTA 57.022 43.478 0.00 0.00 0.00 2.10
1497 1625 6.523035 TCCTCCTACATCTCTCACTCTTAT 57.477 41.667 0.00 0.00 0.00 1.73
1498 1626 6.916909 TCCTCCTACATCTCTCACTCTTATT 58.083 40.000 0.00 0.00 0.00 1.40
1499 1627 7.001674 TCCTCCTACATCTCTCACTCTTATTC 58.998 42.308 0.00 0.00 0.00 1.75
1500 1628 6.208599 CCTCCTACATCTCTCACTCTTATTCC 59.791 46.154 0.00 0.00 0.00 3.01
1501 1629 6.916909 TCCTACATCTCTCACTCTTATTCCT 58.083 40.000 0.00 0.00 0.00 3.36
1509 1637 5.794894 TCTCACTCTTATTCCTTTGTGGTC 58.205 41.667 0.00 0.00 37.07 4.02
1575 1714 9.744468 GATTTCTTCTCTTCTCTGTTATACTCC 57.256 37.037 0.00 0.00 0.00 3.85
1576 1715 8.887264 TTTCTTCTCTTCTCTGTTATACTCCT 57.113 34.615 0.00 0.00 0.00 3.69
1577 1716 9.976776 TTTCTTCTCTTCTCTGTTATACTCCTA 57.023 33.333 0.00 0.00 0.00 2.94
1624 1770 8.631480 AAGATAAAGGATTTCTGTTTTACGGT 57.369 30.769 0.00 0.00 40.09 4.83
1625 1771 8.631480 AGATAAAGGATTTCTGTTTTACGGTT 57.369 30.769 0.00 0.00 40.09 4.44
1626 1772 9.074576 AGATAAAGGATTTCTGTTTTACGGTTT 57.925 29.630 0.00 0.00 40.09 3.27
1627 1773 9.124807 GATAAAGGATTTCTGTTTTACGGTTTG 57.875 33.333 0.00 0.00 40.09 2.93
1628 1774 4.866921 AGGATTTCTGTTTTACGGTTTGC 58.133 39.130 0.00 0.00 0.00 3.68
1629 1775 4.583073 AGGATTTCTGTTTTACGGTTTGCT 59.417 37.500 0.00 0.00 0.00 3.91
1630 1776 4.915667 GGATTTCTGTTTTACGGTTTGCTC 59.084 41.667 0.00 0.00 0.00 4.26
1631 1777 3.974871 TTCTGTTTTACGGTTTGCTCC 57.025 42.857 0.00 0.00 0.00 4.70
1656 1802 2.028130 CGGCTCAACTAGATCCACTCT 58.972 52.381 0.00 0.00 38.06 3.24
1657 1803 2.428890 CGGCTCAACTAGATCCACTCTT 59.571 50.000 0.00 0.00 35.28 2.85
1723 1869 4.458989 GGAATCTTTGCATCAACAGTACCA 59.541 41.667 0.00 0.00 0.00 3.25
1766 1920 5.011227 TGTGCCAATCAATCATATTCATGGG 59.989 40.000 0.00 0.00 32.61 4.00
1893 2050 4.091549 TCTTGTACCCACCAACCTAGTAG 58.908 47.826 0.00 0.00 0.00 2.57
2024 2290 5.968254 TGATAACAAGCACCTTATCGTGTA 58.032 37.500 0.00 0.00 36.08 2.90
2367 2638 6.354794 TCTTTTCGAGGAAGAGGAACAATA 57.645 37.500 8.68 0.00 0.00 1.90
2430 2701 2.512515 GGTGCTGCTCATCGGACC 60.513 66.667 0.00 0.00 0.00 4.46
2432 2703 1.153289 GTGCTGCTCATCGGACCAT 60.153 57.895 0.00 0.00 0.00 3.55
2603 2874 1.542108 GCAAACACCTCACTGCTCTCT 60.542 52.381 0.00 0.00 0.00 3.10
2774 3045 2.359975 CTCGCCTTCAACCACCCC 60.360 66.667 0.00 0.00 0.00 4.95
3128 3399 2.420129 GCAGGTACATCATCTTCGGGTT 60.420 50.000 0.00 0.00 0.00 4.11
3129 3400 3.198068 CAGGTACATCATCTTCGGGTTG 58.802 50.000 0.00 0.00 0.00 3.77
3131 3402 3.263425 AGGTACATCATCTTCGGGTTGTT 59.737 43.478 0.00 0.00 0.00 2.83
3132 3403 3.374058 GGTACATCATCTTCGGGTTGTTG 59.626 47.826 0.00 0.00 0.00 3.33
3133 3404 3.417069 ACATCATCTTCGGGTTGTTGA 57.583 42.857 0.00 0.00 0.00 3.18
3134 3405 3.750371 ACATCATCTTCGGGTTGTTGAA 58.250 40.909 0.00 0.00 0.00 2.69
3135 3406 3.502211 ACATCATCTTCGGGTTGTTGAAC 59.498 43.478 0.00 0.00 0.00 3.18
3161 3432 9.476202 CCTATTTGCTTTATAATAAAAGGTGGC 57.524 33.333 0.00 0.00 37.03 5.01
3162 3433 9.476202 CTATTTGCTTTATAATAAAAGGTGGCC 57.524 33.333 0.00 0.00 37.03 5.36
3163 3434 5.508200 TGCTTTATAATAAAAGGTGGCCG 57.492 39.130 0.00 0.00 37.03 6.13
3164 3435 4.951094 TGCTTTATAATAAAAGGTGGCCGT 59.049 37.500 0.00 0.00 37.03 5.68
3165 3436 6.120905 TGCTTTATAATAAAAGGTGGCCGTA 58.879 36.000 0.00 0.00 37.03 4.02
3166 3437 6.773685 TGCTTTATAATAAAAGGTGGCCGTAT 59.226 34.615 0.00 0.00 37.03 3.06
3167 3438 7.081976 GCTTTATAATAAAAGGTGGCCGTATG 58.918 38.462 0.00 0.00 37.03 2.39
3168 3439 6.563222 TTATAATAAAAGGTGGCCGTATGC 57.437 37.500 0.00 0.00 40.16 3.14
3169 3440 2.428544 ATAAAAGGTGGCCGTATGCA 57.571 45.000 0.00 0.00 43.89 3.96
3170 3441 2.428544 TAAAAGGTGGCCGTATGCAT 57.571 45.000 3.79 3.79 43.89 3.96
3171 3442 1.102978 AAAAGGTGGCCGTATGCATC 58.897 50.000 0.19 0.00 43.89 3.91
3172 3443 0.255890 AAAGGTGGCCGTATGCATCT 59.744 50.000 0.19 0.00 43.89 2.90
3173 3444 0.255890 AAGGTGGCCGTATGCATCTT 59.744 50.000 0.19 0.00 43.89 2.40
3174 3445 0.255890 AGGTGGCCGTATGCATCTTT 59.744 50.000 0.19 0.00 43.89 2.52
3175 3446 0.663153 GGTGGCCGTATGCATCTTTC 59.337 55.000 0.19 0.00 43.89 2.62
3176 3447 1.668419 GTGGCCGTATGCATCTTTCT 58.332 50.000 0.19 0.00 43.89 2.52
3177 3448 1.331756 GTGGCCGTATGCATCTTTCTG 59.668 52.381 0.19 0.00 43.89 3.02
3178 3449 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
3179 3450 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
3188 3459 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
3189 3460 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
3190 3461 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
3191 3462 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
3192 3463 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3194 3465 4.115199 GATGCAGAGGCCGGGGTT 62.115 66.667 2.18 0.00 40.13 4.11
3195 3466 2.690881 ATGCAGAGGCCGGGGTTA 60.691 61.111 2.18 0.00 40.13 2.85
3196 3467 2.056906 GATGCAGAGGCCGGGGTTAT 62.057 60.000 2.18 0.00 40.13 1.89
3197 3468 0.766674 ATGCAGAGGCCGGGGTTATA 60.767 55.000 2.18 0.00 40.13 0.98
3198 3469 1.070957 GCAGAGGCCGGGGTTATAC 59.929 63.158 2.18 0.00 0.00 1.47
3199 3470 1.752833 CAGAGGCCGGGGTTATACC 59.247 63.158 2.18 0.00 37.60 2.73
3288 3559 4.749099 GCTAGCACTCTCGATTGATTTGAT 59.251 41.667 10.63 0.00 0.00 2.57
3289 3560 5.236047 GCTAGCACTCTCGATTGATTTGATT 59.764 40.000 10.63 0.00 0.00 2.57
3290 3561 6.238320 GCTAGCACTCTCGATTGATTTGATTT 60.238 38.462 10.63 0.00 0.00 2.17
3291 3562 5.877031 AGCACTCTCGATTGATTTGATTTG 58.123 37.500 0.00 0.00 0.00 2.32
3292 3563 5.645067 AGCACTCTCGATTGATTTGATTTGA 59.355 36.000 0.00 0.00 0.00 2.69
3293 3564 6.318144 AGCACTCTCGATTGATTTGATTTGAT 59.682 34.615 0.00 0.00 0.00 2.57
3502 3773 4.019792 TGTTGAGCTAGATGAAGCCAAA 57.980 40.909 0.00 0.00 43.86 3.28
3610 3881 1.711060 GAGACTCCTCAGACGAGCCG 61.711 65.000 0.00 0.00 39.24 5.52
3654 3925 1.133976 GCAGCATATGGAAGTGGACCT 60.134 52.381 4.56 0.00 0.00 3.85
3655 3926 2.569059 CAGCATATGGAAGTGGACCTG 58.431 52.381 4.56 0.00 0.00 4.00
3656 3927 1.492176 AGCATATGGAAGTGGACCTGG 59.508 52.381 4.56 0.00 0.00 4.45
3657 3928 1.490490 GCATATGGAAGTGGACCTGGA 59.510 52.381 0.00 0.00 0.00 3.86
3658 3929 2.746472 GCATATGGAAGTGGACCTGGAC 60.746 54.545 0.00 0.00 0.00 4.02
3659 3930 1.580059 TATGGAAGTGGACCTGGACC 58.420 55.000 8.34 8.34 0.00 4.46
3837 4108 1.251527 TTCCAGCCTCAGACTCGGAC 61.252 60.000 0.00 0.00 0.00 4.79
3842 4113 1.874345 GCCTCAGACTCGGACGGAAA 61.874 60.000 0.00 0.00 0.00 3.13
3863 4134 0.323178 CAGGGATGAAGTTGCCAGCT 60.323 55.000 0.00 0.00 0.00 4.24
3924 4195 1.760613 GCAGCAGTATACCCTACACCA 59.239 52.381 0.00 0.00 0.00 4.17
4192 4463 5.241728 ACCCAACTAGAATTTGCTTCTCAAC 59.758 40.000 0.00 0.00 43.32 3.18
4197 4468 7.897575 ACTAGAATTTGCTTCTCAACTACTG 57.102 36.000 0.00 0.00 43.32 2.74
4198 4469 7.445945 ACTAGAATTTGCTTCTCAACTACTGT 58.554 34.615 0.00 0.00 43.32 3.55
4199 4470 8.585881 ACTAGAATTTGCTTCTCAACTACTGTA 58.414 33.333 0.00 0.00 43.32 2.74
4200 4471 7.659652 AGAATTTGCTTCTCAACTACTGTAC 57.340 36.000 0.00 0.00 40.26 2.90
4201 4472 7.445945 AGAATTTGCTTCTCAACTACTGTACT 58.554 34.615 0.00 0.00 40.26 2.73
4202 4473 7.600752 AGAATTTGCTTCTCAACTACTGTACTC 59.399 37.037 0.00 0.00 40.26 2.59
4203 4474 4.785511 TGCTTCTCAACTACTGTACTCC 57.214 45.455 0.00 0.00 0.00 3.85
4204 4475 4.408276 TGCTTCTCAACTACTGTACTCCT 58.592 43.478 0.00 0.00 0.00 3.69
4205 4476 5.567430 TGCTTCTCAACTACTGTACTCCTA 58.433 41.667 0.00 0.00 0.00 2.94
4206 4477 5.648526 TGCTTCTCAACTACTGTACTCCTAG 59.351 44.000 0.00 0.00 0.00 3.02
4212 4483 7.769507 TCTCAACTACTGTACTCCTAGTATGTG 59.230 40.741 0.00 0.00 32.65 3.21
4216 4487 5.838531 ACTGTACTCCTAGTATGTGCTTC 57.161 43.478 0.00 0.00 32.65 3.86
4228 4499 8.727910 CCTAGTATGTGCTTCTACGTTATATCA 58.272 37.037 0.00 0.00 0.00 2.15
4253 4571 1.922570 ACATGCTTACTAACGCCTCG 58.077 50.000 0.00 0.00 0.00 4.63
4514 4851 4.762251 AGGTTGCTAGTTGTCAAAAGGATC 59.238 41.667 0.00 0.00 0.00 3.36
4524 4861 2.293399 GTCAAAAGGATCTGCACCGTTT 59.707 45.455 0.82 0.82 39.01 3.60
4525 4862 3.500680 GTCAAAAGGATCTGCACCGTTTA 59.499 43.478 5.63 0.00 37.09 2.01
4541 4878 7.554835 TGCACCGTTTATATCAGATAAAGGTTT 59.445 33.333 4.29 0.00 30.25 3.27
4618 4955 2.271800 CCACATAGCTTGACTCGGAAC 58.728 52.381 0.00 0.00 0.00 3.62
4624 4961 1.141053 AGCTTGACTCGGAACCAAACT 59.859 47.619 0.00 0.00 0.00 2.66
4673 5010 1.609932 TACGACGATCTGAAACACGC 58.390 50.000 0.00 0.00 0.00 5.34
4681 5018 0.463654 TCTGAAACACGCACAAGCCT 60.464 50.000 0.00 0.00 37.52 4.58
4682 5019 0.040958 CTGAAACACGCACAAGCCTC 60.041 55.000 0.00 0.00 37.52 4.70
4683 5020 0.746204 TGAAACACGCACAAGCCTCA 60.746 50.000 0.00 0.00 37.52 3.86
4684 5021 0.593128 GAAACACGCACAAGCCTCAT 59.407 50.000 0.00 0.00 37.52 2.90
4685 5022 0.593128 AAACACGCACAAGCCTCATC 59.407 50.000 0.00 0.00 37.52 2.92
4686 5023 1.568612 AACACGCACAAGCCTCATCG 61.569 55.000 0.00 0.00 37.52 3.84
4687 5024 2.434884 ACGCACAAGCCTCATCGG 60.435 61.111 0.00 0.00 37.52 4.18
4688 5025 2.125552 CGCACAAGCCTCATCGGA 60.126 61.111 0.00 0.00 37.52 4.55
4689 5026 2.169789 CGCACAAGCCTCATCGGAG 61.170 63.158 0.00 0.00 41.02 4.63
4690 5027 1.219124 GCACAAGCCTCATCGGAGA 59.781 57.895 0.00 0.00 44.26 3.71
4691 5028 1.086634 GCACAAGCCTCATCGGAGAC 61.087 60.000 0.00 0.00 44.26 3.36
4692 5029 0.247460 CACAAGCCTCATCGGAGACA 59.753 55.000 0.00 0.00 44.26 3.41
4693 5030 0.534412 ACAAGCCTCATCGGAGACAG 59.466 55.000 0.00 0.00 44.26 3.51
4694 5031 0.809241 CAAGCCTCATCGGAGACAGC 60.809 60.000 0.00 0.00 44.26 4.40
4695 5032 1.260538 AAGCCTCATCGGAGACAGCA 61.261 55.000 0.00 0.00 44.26 4.41
4696 5033 1.047596 AGCCTCATCGGAGACAGCAT 61.048 55.000 0.00 0.00 44.26 3.79
4697 5034 0.676184 GCCTCATCGGAGACAGCATA 59.324 55.000 0.00 0.00 44.26 3.14
4698 5035 1.336702 GCCTCATCGGAGACAGCATAG 60.337 57.143 0.00 0.00 44.26 2.23
4699 5036 2.234143 CCTCATCGGAGACAGCATAGA 58.766 52.381 0.00 0.00 44.26 1.98
4700 5037 2.824936 CCTCATCGGAGACAGCATAGAT 59.175 50.000 0.00 0.00 44.26 1.98
4701 5038 3.367190 CCTCATCGGAGACAGCATAGATG 60.367 52.174 0.00 0.00 44.26 2.90
4702 5039 3.490348 TCATCGGAGACAGCATAGATGA 58.510 45.455 2.28 2.28 42.51 2.92
4703 5040 3.891366 TCATCGGAGACAGCATAGATGAA 59.109 43.478 3.79 0.00 42.51 2.57
4704 5041 3.717400 TCGGAGACAGCATAGATGAAC 57.283 47.619 0.00 0.00 0.00 3.18
4705 5042 3.023832 TCGGAGACAGCATAGATGAACA 58.976 45.455 0.00 0.00 0.00 3.18
4706 5043 3.638627 TCGGAGACAGCATAGATGAACAT 59.361 43.478 0.00 0.00 0.00 2.71
4707 5044 4.100035 TCGGAGACAGCATAGATGAACATT 59.900 41.667 0.00 0.00 0.00 2.71
4708 5045 5.301805 TCGGAGACAGCATAGATGAACATTA 59.698 40.000 0.00 0.00 0.00 1.90
4709 5046 5.632764 CGGAGACAGCATAGATGAACATTAG 59.367 44.000 0.00 0.00 0.00 1.73
4710 5047 6.515696 CGGAGACAGCATAGATGAACATTAGA 60.516 42.308 0.00 0.00 0.00 2.10
4711 5048 6.867816 GGAGACAGCATAGATGAACATTAGAG 59.132 42.308 0.00 0.00 0.00 2.43
4712 5049 6.757237 AGACAGCATAGATGAACATTAGAGG 58.243 40.000 0.00 0.00 0.00 3.69
4713 5050 6.552725 AGACAGCATAGATGAACATTAGAGGA 59.447 38.462 0.00 0.00 0.00 3.71
4714 5051 6.520272 ACAGCATAGATGAACATTAGAGGAC 58.480 40.000 0.00 0.00 0.00 3.85
4715 5052 5.931146 CAGCATAGATGAACATTAGAGGACC 59.069 44.000 0.00 0.00 0.00 4.46
4716 5053 5.604231 AGCATAGATGAACATTAGAGGACCA 59.396 40.000 0.00 0.00 0.00 4.02
4717 5054 6.271857 AGCATAGATGAACATTAGAGGACCAT 59.728 38.462 0.00 0.00 0.00 3.55
4718 5055 7.455953 AGCATAGATGAACATTAGAGGACCATA 59.544 37.037 0.00 0.00 0.00 2.74
4719 5056 7.547370 GCATAGATGAACATTAGAGGACCATAC 59.453 40.741 0.00 0.00 0.00 2.39
4720 5057 6.090483 AGATGAACATTAGAGGACCATACG 57.910 41.667 0.00 0.00 0.00 3.06
4721 5058 5.598830 AGATGAACATTAGAGGACCATACGT 59.401 40.000 0.00 0.00 0.00 3.57
4722 5059 5.670792 TGAACATTAGAGGACCATACGTT 57.329 39.130 0.00 0.00 0.00 3.99
4723 5060 6.045072 TGAACATTAGAGGACCATACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
4724 5061 6.103997 TGAACATTAGAGGACCATACGTTTC 58.896 40.000 0.00 0.00 0.00 2.78
4725 5062 5.934402 ACATTAGAGGACCATACGTTTCT 57.066 39.130 0.00 0.00 0.00 2.52
4726 5063 6.295719 ACATTAGAGGACCATACGTTTCTT 57.704 37.500 0.00 0.00 0.00 2.52
4727 5064 6.106673 ACATTAGAGGACCATACGTTTCTTG 58.893 40.000 0.00 0.00 0.00 3.02
4728 5065 2.973945 AGAGGACCATACGTTTCTTGC 58.026 47.619 0.00 0.00 0.00 4.01
4729 5066 2.007608 GAGGACCATACGTTTCTTGCC 58.992 52.381 0.00 0.00 0.00 4.52
4730 5067 1.349688 AGGACCATACGTTTCTTGCCA 59.650 47.619 0.00 0.00 0.00 4.92
4731 5068 1.467342 GGACCATACGTTTCTTGCCAC 59.533 52.381 0.00 0.00 0.00 5.01
4732 5069 1.467342 GACCATACGTTTCTTGCCACC 59.533 52.381 0.00 0.00 0.00 4.61
4733 5070 1.073284 ACCATACGTTTCTTGCCACCT 59.927 47.619 0.00 0.00 0.00 4.00
4734 5071 1.468520 CCATACGTTTCTTGCCACCTG 59.531 52.381 0.00 0.00 0.00 4.00
4735 5072 1.468520 CATACGTTTCTTGCCACCTGG 59.531 52.381 0.00 0.00 38.53 4.45
4736 5073 0.250553 TACGTTTCTTGCCACCTGGG 60.251 55.000 0.00 0.00 40.85 4.45
4737 5074 2.268076 CGTTTCTTGCCACCTGGGG 61.268 63.158 0.00 0.00 37.04 4.96
4738 5075 1.908299 GTTTCTTGCCACCTGGGGG 60.908 63.158 11.75 11.75 37.04 5.40
4762 5099 4.115199 GGCTGGGAGCGATTGGGT 62.115 66.667 0.00 0.00 43.62 4.51
4763 5100 2.044946 GCTGGGAGCGATTGGGTT 60.045 61.111 0.00 0.00 0.00 4.11
4803 5142 2.141517 CCATTTTTGGCGCAAATGTGA 58.858 42.857 22.59 0.00 39.18 3.58
4807 5146 0.743688 TTTGGCGCAAATGTGACTGT 59.256 45.000 10.83 0.00 33.92 3.55
4813 5152 2.218530 GCGCAAATGTGACTGTTTTTCC 59.781 45.455 0.30 0.00 0.00 3.13
4857 5196 1.418373 CTGATATCGGCGCAAATCGA 58.582 50.000 10.83 9.68 41.67 3.59
4869 5208 2.286833 CGCAAATCGACCCATATTCGTT 59.713 45.455 0.00 0.00 41.67 3.85
4872 5211 4.271533 GCAAATCGACCCATATTCGTTGTA 59.728 41.667 0.00 0.00 37.73 2.41
4882 5221 0.668096 ATTCGTTGTAGTTCGGCGCA 60.668 50.000 10.83 0.00 0.00 6.09
4883 5222 0.875040 TTCGTTGTAGTTCGGCGCAA 60.875 50.000 10.83 0.00 0.00 4.85
4884 5223 0.875040 TCGTTGTAGTTCGGCGCAAA 60.875 50.000 10.83 0.00 0.00 3.68
5031 5372 2.178521 CGTCGAGCTAGGCGTTGT 59.821 61.111 13.01 0.00 34.13 3.32
5089 5430 2.749076 GCAGTTGTTGATGCACCTATGA 59.251 45.455 0.00 0.00 42.11 2.15
5129 5470 3.749954 GCATATTGAGGAAGGCAGTCCAT 60.750 47.826 9.61 0.00 40.48 3.41
5233 5577 4.202020 GCTCTCAATGATCATGTTGTGCAT 60.202 41.667 9.46 0.00 38.60 3.96
5275 5619 3.609853 TCTCCCACATTTGATCTTTCGG 58.390 45.455 0.00 0.00 0.00 4.30
5280 5624 2.749076 CACATTTGATCTTTCGGCCAGA 59.251 45.455 2.24 0.00 0.00 3.86
5334 5678 0.469705 TTGGAGCACACCAAATGCCT 60.470 50.000 7.41 0.00 45.36 4.75
5369 5713 0.185901 TGCAAGCCTCCTGAACCTTT 59.814 50.000 0.00 0.00 0.00 3.11
5390 5734 0.961753 CAAAGTGGGAGTTCTTGCCC 59.038 55.000 0.00 0.00 44.93 5.36
5435 5779 4.748102 GTCTTCACAAACGTAGACCATCAA 59.252 41.667 3.03 0.00 32.74 2.57
5455 5799 6.983906 TCAAGGATAGATGTCATCAGCTAA 57.016 37.500 15.20 0.00 44.07 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.772973 ACCAGCATTTCGACTAAACATATTATA 57.227 29.630 0.00 0.00 0.00 0.98
53 54 8.677148 ACCAGCATTTCGACTAAACATATTAT 57.323 30.769 0.00 0.00 0.00 1.28
54 55 7.042992 CGACCAGCATTTCGACTAAACATATTA 60.043 37.037 0.00 0.00 37.43 0.98
55 56 6.238103 CGACCAGCATTTCGACTAAACATATT 60.238 38.462 0.00 0.00 37.43 1.28
56 57 5.234329 CGACCAGCATTTCGACTAAACATAT 59.766 40.000 0.00 0.00 37.43 1.78
74 75 0.179156 GCCAATGCAACATCGACCAG 60.179 55.000 0.00 0.00 37.47 4.00
87 88 1.079888 GGAGTTTTGGGCGCCAATG 60.080 57.895 30.85 0.00 43.55 2.82
94 95 1.275856 TGCATCAATGGAGTTTTGGGC 59.724 47.619 0.00 0.00 0.00 5.36
139 141 1.456296 CATGCTTGCCTGAGCTTGTA 58.544 50.000 9.92 0.00 43.11 2.41
144 146 1.375098 GGAGACATGCTTGCCTGAGC 61.375 60.000 4.98 0.00 43.00 4.26
147 149 2.408271 TTAGGAGACATGCTTGCCTG 57.592 50.000 0.00 0.00 0.00 4.85
164 166 7.877097 AGATTTTTGTTTGGTAGCATGCATTTA 59.123 29.630 21.98 0.00 0.00 1.40
187 189 4.252073 GTTGAGACATGTCAAGCTGAGAT 58.748 43.478 27.02 3.30 37.12 2.75
193 195 4.452114 TGTATGTGTTGAGACATGTCAAGC 59.548 41.667 27.02 16.58 37.12 4.01
255 261 3.007506 TCACTTTCCGATGCAACCTCTAA 59.992 43.478 0.00 0.00 0.00 2.10
268 274 2.485426 ACAACATGCATCTCACTTTCCG 59.515 45.455 0.00 0.00 0.00 4.30
272 278 6.294176 GGAACTAAACAACATGCATCTCACTT 60.294 38.462 0.00 0.00 0.00 3.16
308 314 1.177895 TCACAATGCACGCAACCCAT 61.178 50.000 0.00 0.00 0.00 4.00
309 315 1.387295 TTCACAATGCACGCAACCCA 61.387 50.000 0.00 0.00 0.00 4.51
310 316 0.249238 TTTCACAATGCACGCAACCC 60.249 50.000 0.00 0.00 0.00 4.11
311 317 1.565305 TTTTCACAATGCACGCAACC 58.435 45.000 0.00 0.00 0.00 3.77
325 331 4.142271 ACACTGAGCGGAAATTGTTTTTCA 60.142 37.500 1.05 0.00 0.00 2.69
329 335 4.111916 CAAACACTGAGCGGAAATTGTTT 58.888 39.130 0.00 0.00 37.59 2.83
340 346 2.293122 TGCATGTAACCAAACACTGAGC 59.707 45.455 0.00 0.00 30.75 4.26
341 347 4.478699 CATGCATGTAACCAAACACTGAG 58.521 43.478 18.91 0.00 30.75 3.35
344 350 2.627221 TGCATGCATGTAACCAAACACT 59.373 40.909 26.79 0.00 30.75 3.55
380 386 4.695606 AGGAATGGAGGGAGTAGTTGTTA 58.304 43.478 0.00 0.00 0.00 2.41
385 391 8.582891 AATTATTTAGGAATGGAGGGAGTAGT 57.417 34.615 0.00 0.00 0.00 2.73
419 425 9.825972 CGTATGTAGTCATTTGTTGAAATCTTT 57.174 29.630 0.00 0.00 35.70 2.52
420 426 8.450964 CCGTATGTAGTCATTTGTTGAAATCTT 58.549 33.333 0.00 0.00 35.70 2.40
421 427 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
422 428 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
423 429 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
424 430 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
425 431 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
426 432 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
427 433 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
428 434 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
429 435 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
430 436 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
431 437 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
432 438 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
433 439 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
434 440 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
435 441 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
436 442 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
437 443 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
438 444 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
439 445 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
440 446 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
441 447 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
442 448 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
443 449 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
444 450 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
445 451 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
446 452 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
475 481 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
477 483 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
478 484 9.117183 GATACCACATACGGATGTATATAGACA 57.883 37.037 14.23 2.07 44.82 3.41
479 485 9.339850 AGATACCACATACGGATGTATATAGAC 57.660 37.037 14.23 3.62 44.82 2.59
480 486 9.557061 GAGATACCACATACGGATGTATATAGA 57.443 37.037 14.23 0.00 44.82 1.98
481 487 9.562408 AGAGATACCACATACGGATGTATATAG 57.438 37.037 14.23 0.00 44.82 1.31
483 489 9.916360 TTAGAGATACCACATACGGATGTATAT 57.084 33.333 14.23 14.04 44.82 0.86
484 490 9.743581 TTTAGAGATACCACATACGGATGTATA 57.256 33.333 14.23 9.59 44.82 1.47
485 491 8.645814 TTTAGAGATACCACATACGGATGTAT 57.354 34.615 14.23 7.46 44.82 2.29
486 492 8.467963 TTTTAGAGATACCACATACGGATGTA 57.532 34.615 14.23 0.00 44.82 2.29
488 494 7.595502 GTCTTTTAGAGATACCACATACGGATG 59.404 40.741 5.94 5.94 36.61 3.51
489 495 7.287005 TGTCTTTTAGAGATACCACATACGGAT 59.713 37.037 0.00 0.00 36.61 4.18
490 496 6.604396 TGTCTTTTAGAGATACCACATACGGA 59.396 38.462 0.00 0.00 36.61 4.69
491 497 6.802608 TGTCTTTTAGAGATACCACATACGG 58.197 40.000 0.00 0.00 36.61 4.02
492 498 8.697846 TTTGTCTTTTAGAGATACCACATACG 57.302 34.615 0.00 0.00 36.61 3.06
505 511 9.947433 TCCGTTCCTAAATATTTGTCTTTTAGA 57.053 29.630 11.05 0.00 35.79 2.10
507 513 9.169592 CCTCCGTTCCTAAATATTTGTCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
508 514 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
509 515 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
510 516 6.120220 CCCTCCGTTCCTAAATATTTGTCTT 58.880 40.000 11.05 0.00 0.00 3.01
511 517 5.397559 CCCCTCCGTTCCTAAATATTTGTCT 60.398 44.000 11.05 0.00 0.00 3.41
512 518 4.820173 CCCCTCCGTTCCTAAATATTTGTC 59.180 45.833 11.05 0.00 0.00 3.18
513 519 4.385977 CCCCCTCCGTTCCTAAATATTTGT 60.386 45.833 11.05 0.00 0.00 2.83
514 520 4.142038 CCCCCTCCGTTCCTAAATATTTG 58.858 47.826 11.05 1.40 0.00 2.32
515 521 3.789840 ACCCCCTCCGTTCCTAAATATTT 59.210 43.478 5.89 5.89 0.00 1.40
516 522 3.393609 GACCCCCTCCGTTCCTAAATATT 59.606 47.826 0.00 0.00 0.00 1.28
517 523 2.977580 GACCCCCTCCGTTCCTAAATAT 59.022 50.000 0.00 0.00 0.00 1.28
518 524 2.022722 AGACCCCCTCCGTTCCTAAATA 60.023 50.000 0.00 0.00 0.00 1.40
519 525 1.210538 GACCCCCTCCGTTCCTAAAT 58.789 55.000 0.00 0.00 0.00 1.40
520 526 0.117742 AGACCCCCTCCGTTCCTAAA 59.882 55.000 0.00 0.00 0.00 1.85
521 527 1.009997 TAGACCCCCTCCGTTCCTAA 58.990 55.000 0.00 0.00 0.00 2.69
522 528 0.259938 GTAGACCCCCTCCGTTCCTA 59.740 60.000 0.00 0.00 0.00 2.94
523 529 1.001376 GTAGACCCCCTCCGTTCCT 59.999 63.158 0.00 0.00 0.00 3.36
524 530 1.305549 TGTAGACCCCCTCCGTTCC 60.306 63.158 0.00 0.00 0.00 3.62
533 539 0.390124 TTGTCACGTGTGTAGACCCC 59.610 55.000 16.51 0.00 0.00 4.95
576 603 0.665068 TAGTTGCTGGTACGTGTGCG 60.665 55.000 0.00 0.00 44.93 5.34
577 604 1.193874 GTTAGTTGCTGGTACGTGTGC 59.806 52.381 0.00 0.00 0.00 4.57
592 619 2.543777 TCTGCGCCTTTCTTGTTAGT 57.456 45.000 4.18 0.00 0.00 2.24
593 620 3.484229 CGATTCTGCGCCTTTCTTGTTAG 60.484 47.826 4.18 0.00 0.00 2.34
605 647 1.086634 AAAGGAGCTCGATTCTGCGC 61.087 55.000 7.83 0.00 0.00 6.09
686 728 5.540337 TCTCCTCTCTCTATCTCACTCTCTC 59.460 48.000 0.00 0.00 0.00 3.20
776 818 7.392766 TGGAGATTGTGGTCTATGGATATTT 57.607 36.000 0.00 0.00 0.00 1.40
794 836 1.211457 GAGCTGTGGTCCAATGGAGAT 59.789 52.381 0.27 0.00 29.39 2.75
835 881 1.777272 AGTTGCAGGGGTTTCTCTTCT 59.223 47.619 0.00 0.00 0.00 2.85
836 882 2.155279 GAGTTGCAGGGGTTTCTCTTC 58.845 52.381 0.00 0.00 0.00 2.87
837 883 1.777272 AGAGTTGCAGGGGTTTCTCTT 59.223 47.619 0.00 0.00 0.00 2.85
838 884 1.072965 CAGAGTTGCAGGGGTTTCTCT 59.927 52.381 0.00 0.00 33.38 3.10
839 885 1.528129 CAGAGTTGCAGGGGTTTCTC 58.472 55.000 0.00 0.00 0.00 2.87
917 969 4.532126 AGTGATGTGGAGTAAATCTGACCA 59.468 41.667 0.00 0.00 0.00 4.02
978 1030 3.198872 GGAATCGTGGAAGAATGGAGAC 58.801 50.000 0.00 0.00 0.00 3.36
1008 1060 2.474816 AGATTTGCTTAGATCGGCGAC 58.525 47.619 13.76 6.55 0.00 5.19
1018 1070 4.216257 GCTCTGGTGAACAAGATTTGCTTA 59.784 41.667 0.00 0.00 34.31 3.09
1093 1145 1.770085 GCTGGATAACGAGCAGCAGC 61.770 60.000 0.00 0.00 45.02 5.25
1094 1146 2.305405 GCTGGATAACGAGCAGCAG 58.695 57.895 0.00 0.00 45.02 4.24
1095 1147 4.521075 GCTGGATAACGAGCAGCA 57.479 55.556 0.00 0.00 45.02 4.41
1099 1151 3.010420 AGGAAAAAGCTGGATAACGAGC 58.990 45.455 0.00 0.00 45.80 5.03
1100 1152 4.142600 CCAAGGAAAAAGCTGGATAACGAG 60.143 45.833 0.00 0.00 0.00 4.18
1101 1153 3.756434 CCAAGGAAAAAGCTGGATAACGA 59.244 43.478 0.00 0.00 0.00 3.85
1158 1210 2.282462 ACCAAGGCCTTTCTGCGG 60.282 61.111 17.61 16.37 0.00 5.69
1234 1286 4.922026 AACCACACCACCGTCCGC 62.922 66.667 0.00 0.00 0.00 5.54
1235 1287 2.663852 GAACCACACCACCGTCCG 60.664 66.667 0.00 0.00 0.00 4.79
1236 1288 1.597027 CTGAACCACACCACCGTCC 60.597 63.158 0.00 0.00 0.00 4.79
1237 1289 1.597027 CCTGAACCACACCACCGTC 60.597 63.158 0.00 0.00 0.00 4.79
1526 1654 5.950549 TCTTAACCAAGTACTCCTAGGACAG 59.049 44.000 7.62 1.28 33.20 3.51
1527 1655 5.895807 TCTTAACCAAGTACTCCTAGGACA 58.104 41.667 7.62 0.00 33.20 4.02
1528 1656 7.421087 AATCTTAACCAAGTACTCCTAGGAC 57.579 40.000 7.62 0.00 33.20 3.85
1529 1657 7.899709 AGAAATCTTAACCAAGTACTCCTAGGA 59.100 37.037 11.98 11.98 33.20 2.94
1530 1658 8.080363 AGAAATCTTAACCAAGTACTCCTAGG 57.920 38.462 0.82 0.82 33.20 3.02
1533 1661 8.208575 AGAAGAAATCTTAACCAAGTACTCCT 57.791 34.615 0.00 0.00 33.39 3.69
1534 1662 8.315482 AGAGAAGAAATCTTAACCAAGTACTCC 58.685 37.037 0.00 0.00 38.96 3.85
1536 1664 9.713713 GAAGAGAAGAAATCTTAACCAAGTACT 57.286 33.333 0.00 0.00 38.96 2.73
1537 1665 9.713713 AGAAGAGAAGAAATCTTAACCAAGTAC 57.286 33.333 0.00 0.00 38.96 2.73
1603 1749 6.919115 GCAAACCGTAAAACAGAAATCCTTTA 59.081 34.615 0.00 0.00 0.00 1.85
1609 1755 4.555906 CGGAGCAAACCGTAAAACAGAAAT 60.556 41.667 8.46 0.00 46.70 2.17
1610 1756 3.242804 CGGAGCAAACCGTAAAACAGAAA 60.243 43.478 8.46 0.00 46.70 2.52
1611 1757 2.288458 CGGAGCAAACCGTAAAACAGAA 59.712 45.455 8.46 0.00 46.70 3.02
1612 1758 1.868498 CGGAGCAAACCGTAAAACAGA 59.132 47.619 8.46 0.00 46.70 3.41
1613 1759 2.309898 CGGAGCAAACCGTAAAACAG 57.690 50.000 8.46 0.00 46.70 3.16
1631 1777 0.318275 GATCTAGTTGAGCCGGAGCG 60.318 60.000 5.05 0.00 46.67 5.03
1632 1778 0.032815 GGATCTAGTTGAGCCGGAGC 59.967 60.000 5.05 0.00 41.78 4.70
1638 1784 5.344884 GTGTAAGAGTGGATCTAGTTGAGC 58.655 45.833 0.00 0.00 37.23 4.26
1639 1785 5.354513 TCGTGTAAGAGTGGATCTAGTTGAG 59.645 44.000 0.00 0.00 37.23 3.02
1640 1786 5.250982 TCGTGTAAGAGTGGATCTAGTTGA 58.749 41.667 0.00 0.00 37.23 3.18
1641 1787 5.562506 TCGTGTAAGAGTGGATCTAGTTG 57.437 43.478 0.00 0.00 37.23 3.16
1656 1802 6.765989 CCTCCATTTTCTATTGGATCGTGTAA 59.234 38.462 0.00 0.00 41.09 2.41
1657 1803 6.288294 CCTCCATTTTCTATTGGATCGTGTA 58.712 40.000 0.00 0.00 41.09 2.90
1699 1845 4.702131 GGTACTGTTGATGCAAAGATTCCT 59.298 41.667 0.00 0.00 0.00 3.36
1723 1869 1.280133 CACACATCACACAGGAGGGAT 59.720 52.381 0.00 0.00 0.00 3.85
1780 1937 3.194968 TGTGGAGTACAGGTTAAGCTAGC 59.805 47.826 6.62 6.62 33.42 3.42
1976 2231 9.634163 CAAAAAGGAAAACAACTACTACTTGTT 57.366 29.630 0.00 0.00 42.41 2.83
1977 2232 9.016438 TCAAAAAGGAAAACAACTACTACTTGT 57.984 29.630 0.00 0.00 33.09 3.16
1985 2240 9.308318 GCTTGTTATCAAAAAGGAAAACAACTA 57.692 29.630 0.00 0.00 34.27 2.24
1987 2242 7.902917 GTGCTTGTTATCAAAAAGGAAAACAAC 59.097 33.333 0.00 0.00 34.27 3.32
1990 2256 6.761242 AGGTGCTTGTTATCAAAAAGGAAAAC 59.239 34.615 0.00 0.00 32.87 2.43
2024 2290 2.483538 GGCCATTTGTTTGTGTCAGCTT 60.484 45.455 0.00 0.00 0.00 3.74
2384 2655 5.717078 AGTCACCTGTCGTTATTGTTCTA 57.283 39.130 0.00 0.00 0.00 2.10
2385 2656 4.602340 AGTCACCTGTCGTTATTGTTCT 57.398 40.909 0.00 0.00 0.00 3.01
2386 2657 4.510340 ACAAGTCACCTGTCGTTATTGTTC 59.490 41.667 0.00 0.00 0.00 3.18
2603 2874 1.378762 GCCAAAGTGCAGGTAGGGA 59.621 57.895 0.00 0.00 0.00 4.20
2774 3045 3.123620 GGCTTCTCGTGGCTGCAG 61.124 66.667 10.11 10.11 0.00 4.41
3135 3406 9.476202 GCCACCTTTTATTATAAAGCAAATAGG 57.524 33.333 8.50 8.50 34.51 2.57
3136 3407 9.476202 GGCCACCTTTTATTATAAAGCAAATAG 57.524 33.333 0.00 0.00 34.51 1.73
3137 3408 8.138712 CGGCCACCTTTTATTATAAAGCAAATA 58.861 33.333 2.24 0.00 34.51 1.40
3138 3409 6.983890 CGGCCACCTTTTATTATAAAGCAAAT 59.016 34.615 2.24 0.00 34.51 2.32
3139 3410 6.071278 ACGGCCACCTTTTATTATAAAGCAAA 60.071 34.615 2.24 0.00 34.51 3.68
3140 3411 5.419471 ACGGCCACCTTTTATTATAAAGCAA 59.581 36.000 2.24 0.00 34.51 3.91
3141 3412 4.951094 ACGGCCACCTTTTATTATAAAGCA 59.049 37.500 2.24 0.00 34.51 3.91
3142 3413 5.509716 ACGGCCACCTTTTATTATAAAGC 57.490 39.130 2.24 0.00 34.51 3.51
3143 3414 7.081976 GCATACGGCCACCTTTTATTATAAAG 58.918 38.462 2.24 0.00 36.11 1.85
3144 3415 6.546403 TGCATACGGCCACCTTTTATTATAAA 59.454 34.615 2.24 0.00 43.89 1.40
3145 3416 6.062749 TGCATACGGCCACCTTTTATTATAA 58.937 36.000 2.24 0.00 43.89 0.98
3146 3417 5.622180 TGCATACGGCCACCTTTTATTATA 58.378 37.500 2.24 0.00 43.89 0.98
3147 3418 4.465886 TGCATACGGCCACCTTTTATTAT 58.534 39.130 2.24 0.00 43.89 1.28
3148 3419 3.887352 TGCATACGGCCACCTTTTATTA 58.113 40.909 2.24 0.00 43.89 0.98
3149 3420 2.729194 TGCATACGGCCACCTTTTATT 58.271 42.857 2.24 0.00 43.89 1.40
3150 3421 2.428544 TGCATACGGCCACCTTTTAT 57.571 45.000 2.24 0.00 43.89 1.40
3151 3422 2.092646 AGATGCATACGGCCACCTTTTA 60.093 45.455 2.24 0.00 43.89 1.52
3152 3423 1.102978 GATGCATACGGCCACCTTTT 58.897 50.000 2.24 0.00 43.89 2.27
3153 3424 0.255890 AGATGCATACGGCCACCTTT 59.744 50.000 2.24 0.00 43.89 3.11
3154 3425 0.255890 AAGATGCATACGGCCACCTT 59.744 50.000 2.24 0.00 43.89 3.50
3155 3426 0.255890 AAAGATGCATACGGCCACCT 59.744 50.000 2.24 0.00 43.89 4.00
3156 3427 0.663153 GAAAGATGCATACGGCCACC 59.337 55.000 2.24 0.00 43.89 4.61
3157 3428 1.331756 CAGAAAGATGCATACGGCCAC 59.668 52.381 2.24 0.00 43.89 5.01
3158 3429 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
3159 3430 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
3160 3431 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
3169 3440 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
3170 3441 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
3171 3442 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
3172 3443 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
3173 3444 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3174 3445 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3175 3446 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3177 3448 2.056906 ATAACCCCGGCCTCTGCATC 62.057 60.000 0.00 0.00 40.13 3.91
3178 3449 0.766674 TATAACCCCGGCCTCTGCAT 60.767 55.000 0.00 0.00 40.13 3.96
3179 3450 1.383386 TATAACCCCGGCCTCTGCA 60.383 57.895 0.00 0.00 40.13 4.41
3180 3451 1.070957 GTATAACCCCGGCCTCTGC 59.929 63.158 0.00 0.00 0.00 4.26
3181 3452 1.752833 GGTATAACCCCGGCCTCTG 59.247 63.158 0.00 0.00 30.04 3.35
3182 3453 4.308061 GGTATAACCCCGGCCTCT 57.692 61.111 0.00 0.00 30.04 3.69
3244 3515 9.429359 GCTAGCTAGCTATTTTGATTATCTTCA 57.571 33.333 33.71 0.00 45.62 3.02
3300 3571 9.844790 CTTCAAACTGAGAAATGCAATACATAA 57.155 29.630 0.00 0.00 38.34 1.90
3502 3773 4.547859 GCGTCCTGCAATCTGGAT 57.452 55.556 0.00 0.00 45.45 3.41
3610 3881 3.922116 TTGGGGGAAGGCAATGGGC 62.922 63.158 0.00 0.00 43.74 5.36
3654 3925 1.610967 TGGATAGTGGCACGGTCCA 60.611 57.895 30.35 30.35 35.31 4.02
3655 3926 1.153429 GTGGATAGTGGCACGGTCC 60.153 63.158 27.03 27.03 0.00 4.46
3656 3927 0.739813 GTGTGGATAGTGGCACGGTC 60.740 60.000 12.71 13.70 0.00 4.79
3657 3928 1.295423 GTGTGGATAGTGGCACGGT 59.705 57.895 12.71 4.61 0.00 4.83
3658 3929 1.019278 GTGTGTGGATAGTGGCACGG 61.019 60.000 12.71 0.00 34.86 4.94
3659 3930 1.019278 GGTGTGTGGATAGTGGCACG 61.019 60.000 12.71 0.00 34.86 5.34
3782 4053 1.258445 ACCTCCGGCCTAGTCACTTG 61.258 60.000 0.00 0.00 0.00 3.16
3837 4108 2.098117 GCAACTTCATCCCTGATTTCCG 59.902 50.000 0.00 0.00 0.00 4.30
3842 4113 1.684248 GCTGGCAACTTCATCCCTGAT 60.684 52.381 0.00 0.00 37.61 2.90
3904 4175 1.760613 TGGTGTAGGGTATACTGCTGC 59.239 52.381 2.25 0.00 0.00 5.25
3905 4176 3.641436 TGATGGTGTAGGGTATACTGCTG 59.359 47.826 2.25 0.00 0.00 4.41
3906 4177 3.641906 GTGATGGTGTAGGGTATACTGCT 59.358 47.826 2.25 0.00 0.00 4.24
4192 4463 6.768861 AGAAGCACATACTAGGAGTACAGTAG 59.231 42.308 0.00 0.00 32.84 2.57
4197 4468 5.526846 ACGTAGAAGCACATACTAGGAGTAC 59.473 44.000 0.00 0.00 32.84 2.73
4198 4469 5.678583 ACGTAGAAGCACATACTAGGAGTA 58.321 41.667 0.00 0.00 34.82 2.59
4199 4470 4.525024 ACGTAGAAGCACATACTAGGAGT 58.475 43.478 0.00 0.00 0.00 3.85
4200 4471 5.502153 AACGTAGAAGCACATACTAGGAG 57.498 43.478 0.00 0.00 0.00 3.69
4201 4472 8.859236 ATATAACGTAGAAGCACATACTAGGA 57.141 34.615 0.00 0.00 0.00 2.94
4202 4473 8.727910 TGATATAACGTAGAAGCACATACTAGG 58.272 37.037 0.00 0.00 0.00 3.02
4228 4499 6.158023 AGGCGTTAGTAAGCATGTACTATT 57.842 37.500 4.54 0.00 36.65 1.73
4229 4500 5.562307 CGAGGCGTTAGTAAGCATGTACTAT 60.562 44.000 4.54 0.00 36.65 2.12
4493 4830 5.693814 CAGATCCTTTTGACAACTAGCAAC 58.306 41.667 0.00 0.00 0.00 4.17
4514 4851 6.706270 ACCTTTATCTGATATAAACGGTGCAG 59.294 38.462 0.00 0.00 30.87 4.41
4618 4955 7.444183 TCAGTATACACTCTTCCAAAAGTTTGG 59.556 37.037 15.43 15.43 45.29 3.28
4657 4994 1.136690 TGTGCGTGTTTCAGATCGTC 58.863 50.000 0.00 0.00 0.00 4.20
4673 5010 0.247460 TGTCTCCGATGAGGCTTGTG 59.753 55.000 0.00 0.00 43.86 3.33
4681 5018 3.490348 TCATCTATGCTGTCTCCGATGA 58.510 45.455 0.00 0.00 36.04 2.92
4682 5019 3.930634 TCATCTATGCTGTCTCCGATG 57.069 47.619 0.00 0.00 0.00 3.84
4683 5020 3.638627 TGTTCATCTATGCTGTCTCCGAT 59.361 43.478 0.00 0.00 0.00 4.18
4684 5021 3.023832 TGTTCATCTATGCTGTCTCCGA 58.976 45.455 0.00 0.00 0.00 4.55
4685 5022 3.443099 TGTTCATCTATGCTGTCTCCG 57.557 47.619 0.00 0.00 0.00 4.63
4686 5023 6.753180 TCTAATGTTCATCTATGCTGTCTCC 58.247 40.000 0.00 0.00 0.00 3.71
4687 5024 6.867816 CCTCTAATGTTCATCTATGCTGTCTC 59.132 42.308 0.00 0.00 0.00 3.36
4688 5025 6.552725 TCCTCTAATGTTCATCTATGCTGTCT 59.447 38.462 0.00 0.00 0.00 3.41
4689 5026 6.644592 GTCCTCTAATGTTCATCTATGCTGTC 59.355 42.308 0.00 0.00 0.00 3.51
4690 5027 6.463614 GGTCCTCTAATGTTCATCTATGCTGT 60.464 42.308 0.00 0.00 0.00 4.40
4691 5028 5.931146 GGTCCTCTAATGTTCATCTATGCTG 59.069 44.000 0.00 0.00 0.00 4.41
4692 5029 5.604231 TGGTCCTCTAATGTTCATCTATGCT 59.396 40.000 0.00 0.00 0.00 3.79
4693 5030 5.858381 TGGTCCTCTAATGTTCATCTATGC 58.142 41.667 0.00 0.00 0.00 3.14
4694 5031 7.757173 CGTATGGTCCTCTAATGTTCATCTATG 59.243 40.741 0.00 0.00 0.00 2.23
4695 5032 7.451877 ACGTATGGTCCTCTAATGTTCATCTAT 59.548 37.037 0.00 0.00 0.00 1.98
4696 5033 6.776116 ACGTATGGTCCTCTAATGTTCATCTA 59.224 38.462 0.00 0.00 0.00 1.98
4697 5034 5.598830 ACGTATGGTCCTCTAATGTTCATCT 59.401 40.000 0.00 0.00 0.00 2.90
4698 5035 5.844004 ACGTATGGTCCTCTAATGTTCATC 58.156 41.667 0.00 0.00 0.00 2.92
4699 5036 5.871396 ACGTATGGTCCTCTAATGTTCAT 57.129 39.130 0.00 0.00 0.00 2.57
4700 5037 5.670792 AACGTATGGTCCTCTAATGTTCA 57.329 39.130 0.00 0.00 0.00 3.18
4701 5038 6.338937 AGAAACGTATGGTCCTCTAATGTTC 58.661 40.000 0.00 0.00 0.00 3.18
4702 5039 6.295719 AGAAACGTATGGTCCTCTAATGTT 57.704 37.500 0.00 0.00 0.00 2.71
4703 5040 5.934402 AGAAACGTATGGTCCTCTAATGT 57.066 39.130 0.00 0.00 0.00 2.71
4704 5041 5.006746 GCAAGAAACGTATGGTCCTCTAATG 59.993 44.000 0.00 0.00 0.00 1.90
4705 5042 5.116882 GCAAGAAACGTATGGTCCTCTAAT 58.883 41.667 0.00 0.00 0.00 1.73
4706 5043 4.501071 GCAAGAAACGTATGGTCCTCTAA 58.499 43.478 0.00 0.00 0.00 2.10
4707 5044 3.118884 GGCAAGAAACGTATGGTCCTCTA 60.119 47.826 0.00 0.00 0.00 2.43
4708 5045 2.354805 GGCAAGAAACGTATGGTCCTCT 60.355 50.000 0.00 0.00 0.00 3.69
4709 5046 2.007608 GGCAAGAAACGTATGGTCCTC 58.992 52.381 0.00 0.00 0.00 3.71
4710 5047 1.349688 TGGCAAGAAACGTATGGTCCT 59.650 47.619 0.00 0.00 0.00 3.85
4711 5048 1.467342 GTGGCAAGAAACGTATGGTCC 59.533 52.381 0.00 0.00 0.00 4.46
4712 5049 1.467342 GGTGGCAAGAAACGTATGGTC 59.533 52.381 0.00 0.00 0.00 4.02
4713 5050 1.073284 AGGTGGCAAGAAACGTATGGT 59.927 47.619 0.00 0.00 0.00 3.55
4714 5051 1.468520 CAGGTGGCAAGAAACGTATGG 59.531 52.381 0.00 0.00 0.00 2.74
4715 5052 1.468520 CCAGGTGGCAAGAAACGTATG 59.531 52.381 0.00 0.00 0.00 2.39
4716 5053 1.613255 CCCAGGTGGCAAGAAACGTAT 60.613 52.381 0.00 0.00 0.00 3.06
4717 5054 0.250553 CCCAGGTGGCAAGAAACGTA 60.251 55.000 0.00 0.00 0.00 3.57
4718 5055 1.528309 CCCAGGTGGCAAGAAACGT 60.528 57.895 0.00 0.00 0.00 3.99
4719 5056 2.268076 CCCCAGGTGGCAAGAAACG 61.268 63.158 0.00 0.00 0.00 3.60
4720 5057 1.908299 CCCCCAGGTGGCAAGAAAC 60.908 63.158 0.00 0.00 0.00 2.78
4721 5058 2.525592 CCCCCAGGTGGCAAGAAA 59.474 61.111 0.00 0.00 0.00 2.52
4745 5082 3.645268 AACCCAATCGCTCCCAGCC 62.645 63.158 0.00 0.00 38.18 4.85
4746 5083 2.044946 AACCCAATCGCTCCCAGC 60.045 61.111 0.00 0.00 38.02 4.85
4747 5084 1.452108 GGAACCCAATCGCTCCCAG 60.452 63.158 0.00 0.00 0.00 4.45
4748 5085 2.674754 GGAACCCAATCGCTCCCA 59.325 61.111 0.00 0.00 0.00 4.37
4761 5098 1.668151 GATATCGGCGCCTGGGAAC 60.668 63.158 26.68 7.74 0.00 3.62
4762 5099 2.741092 GATATCGGCGCCTGGGAA 59.259 61.111 26.68 5.52 0.00 3.97
4763 5100 3.680786 CGATATCGGCGCCTGGGA 61.681 66.667 26.68 15.44 35.37 4.37
4803 5142 1.480789 AAACTGGGCGGAAAAACAGT 58.519 45.000 0.00 0.00 45.34 3.55
4807 5146 0.179070 GCCAAAACTGGGCGGAAAAA 60.179 50.000 0.00 0.00 42.39 1.94
4857 5196 3.788937 CCGAACTACAACGAATATGGGT 58.211 45.455 0.00 0.00 0.00 4.51
4998 5339 4.267690 GCTCGACGTGTGATGAAATATGAA 59.732 41.667 0.00 0.00 0.00 2.57
5089 5430 0.820871 GCGTCAGGAGATCCAAGACT 59.179 55.000 17.15 0.00 39.58 3.24
5129 5470 2.371841 AGTTGATCACCAGCTACCAACA 59.628 45.455 0.00 0.00 37.08 3.33
5275 5619 2.134287 TACCCCGCTCAGATCTGGC 61.134 63.158 22.42 21.11 0.00 4.85
5302 5646 2.421424 GTGCTCCAATCTCGATTTGCTT 59.579 45.455 3.36 0.00 0.00 3.91
5334 5678 1.219124 GCAGGAAGGATGTCGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
5369 5713 1.032014 GCAAGAACTCCCACTTTGCA 58.968 50.000 2.93 0.00 0.00 4.08
5390 5734 0.817634 TCTCAAACGTTGTGCCAGGG 60.818 55.000 0.00 0.00 0.00 4.45
5435 5779 6.073981 TCACTTAGCTGATGACATCTATCCT 58.926 40.000 16.25 9.22 0.00 3.24
5455 5799 4.349342 CCTCTAGGGCATATTTCCTTCACT 59.651 45.833 0.00 0.00 34.75 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.