Multiple sequence alignment - TraesCS6B01G223500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G223500 chr6B 100.000 6268 0 0 932 7199 336245418 336251685 0.000000e+00 11575.0
1 TraesCS6B01G223500 chr6B 100.000 653 0 0 1 653 336244487 336245139 0.000000e+00 1206.0
2 TraesCS6B01G223500 chr6A 96.266 2812 76 12 3827 6614 351830650 351827844 0.000000e+00 4584.0
3 TraesCS6B01G223500 chr6A 94.894 2781 66 30 992 3711 351833506 351830741 0.000000e+00 4279.0
4 TraesCS6B01G223500 chr6A 87.844 691 24 21 1 653 351834597 351833929 0.000000e+00 756.0
5 TraesCS6B01G223500 chr6A 87.500 112 9 5 6606 6713 457381483 457381593 2.730000e-24 124.0
6 TraesCS6B01G223500 chr6A 87.736 106 7 3 6605 6706 499211688 499211791 1.270000e-22 119.0
7 TraesCS6B01G223500 chr6A 100.000 54 0 0 6759 6812 351827723 351827670 4.600000e-17 100.0
8 TraesCS6B01G223500 chr6D 95.648 2803 76 18 3835 6614 258040054 258037275 0.000000e+00 4458.0
9 TraesCS6B01G223500 chr6D 96.793 1715 49 5 2043 3755 258042014 258040304 0.000000e+00 2857.0
10 TraesCS6B01G223500 chr6D 97.863 655 10 3 963 1615 258043120 258042468 0.000000e+00 1129.0
11 TraesCS6B01G223500 chr6D 91.811 635 21 16 50 653 258044190 258043556 0.000000e+00 856.0
12 TraesCS6B01G223500 chr6D 94.776 402 14 3 1642 2036 258042469 258042068 2.850000e-173 619.0
13 TraesCS6B01G223500 chr6D 92.623 244 12 4 6880 7118 257958236 257957994 5.350000e-91 346.0
14 TraesCS6B01G223500 chr6D 86.301 146 10 6 6759 6894 258037176 258037031 4.500000e-32 150.0
15 TraesCS6B01G223500 chr6D 85.124 121 15 2 6592 6709 98099946 98100066 3.530000e-23 121.0
16 TraesCS6B01G223500 chr6D 100.000 43 0 0 1 43 258047815 258047857 5.990000e-11 80.5
17 TraesCS6B01G223500 chr3D 92.035 113 6 2 4757 4868 100390402 100390512 9.670000e-34 156.0
18 TraesCS6B01G223500 chr3D 94.872 39 1 1 6708 6745 489747131 489747169 7.800000e-05 60.2
19 TraesCS6B01G223500 chr3B 92.035 113 4 3 4757 4868 150850833 150850941 3.480000e-33 154.0
20 TraesCS6B01G223500 chr3B 89.320 103 8 3 6613 6712 551006714 551006612 7.580000e-25 126.0
21 TraesCS6B01G223500 chr7A 90.909 99 6 3 6611 6706 692780434 692780336 5.860000e-26 130.0
22 TraesCS6B01G223500 chr7A 84.615 91 12 2 194 283 429040126 429040215 9.950000e-14 89.8
23 TraesCS6B01G223500 chr1D 89.623 106 6 2 6605 6706 37458335 37458231 5.860000e-26 130.0
24 TraesCS6B01G223500 chr2B 87.069 116 11 4 6610 6722 397939473 397939359 2.110000e-25 128.0
25 TraesCS6B01G223500 chr2B 81.319 91 17 0 3472 3562 478105295 478105385 2.790000e-09 75.0
26 TraesCS6B01G223500 chr4B 87.611 113 8 3 6611 6718 621424694 621424805 7.580000e-25 126.0
27 TraesCS6B01G223500 chr4B 81.373 102 17 2 6941 7042 602727811 602727712 1.660000e-11 82.4
28 TraesCS6B01G223500 chr4B 94.872 39 1 1 6708 6745 673246053 673246015 7.800000e-05 60.2
29 TraesCS6B01G223500 chr7B 88.679 106 6 3 6605 6706 562993169 562993066 2.730000e-24 124.0
30 TraesCS6B01G223500 chr5B 87.500 96 11 1 6942 7037 429644517 429644423 7.640000e-20 110.0
31 TraesCS6B01G223500 chr5D 82.653 98 16 1 6942 7038 363330481 363330384 1.290000e-12 86.1
32 TraesCS6B01G223500 chr5A 82.653 98 16 1 6942 7038 464631235 464631138 1.290000e-12 86.1
33 TraesCS6B01G223500 chr4D 92.308 39 2 1 6708 6745 384269903 384269941 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G223500 chr6B 336244487 336251685 7198 False 6390.500000 11575 100.000000 1 7199 2 chr6B.!!$F1 7198
1 TraesCS6B01G223500 chr6A 351827670 351834597 6927 True 2429.750000 4584 94.751000 1 6812 4 chr6A.!!$R1 6811
2 TraesCS6B01G223500 chr6D 258037031 258044190 7159 True 1678.166667 4458 93.865333 50 6894 6 chr6D.!!$R2 6844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 994 1.136774 GTTTCAATTCGCCGAGGGC 59.863 57.895 0.00 0.00 46.75 5.19 F
1761 1930 0.457443 GGTGCCTTTTAGCCTGATGC 59.543 55.000 0.00 0.00 41.71 3.91 F
3004 3260 0.320771 AATCGTGCTCGCTCAAAGGT 60.321 50.000 2.69 0.00 36.96 3.50 F
4567 5065 0.106569 TGCCACATCCATTGCCCTAG 60.107 55.000 0.00 0.00 0.00 3.02 F
4581 5079 0.902531 CCCTAGTCGGTGTCACCATT 59.097 55.000 21.91 8.73 38.47 3.16 F
4607 5105 1.000283 GATGGCAGCGTGCTAGACTAT 60.000 52.381 9.31 0.00 44.28 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2565 2821 0.389426 CCCAACCCACGTAAGAGTCG 60.389 60.000 0.0 0.0 43.62 4.18 R
3122 3378 3.133003 GGACTCTGCTAATGTCTTGCCTA 59.867 47.826 0.0 0.0 0.00 3.93 R
4583 5081 0.531311 CTAGCACGCTGCCATCATGA 60.531 55.000 0.0 0.0 46.52 3.07 R
5947 6445 0.167470 CTCACCTGCACAAGATTGCG 59.833 55.000 0.0 0.0 46.20 4.85 R
6179 6678 1.936547 GCCAAGGACTCTTTGCTATCG 59.063 52.381 0.0 0.0 38.27 2.92 R
6338 6840 3.204382 ACCTACATTTGGTATTCCTGGGG 59.796 47.826 0.0 0.0 35.80 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.545666 TGATGTGAATGAAAGGTTACAACAGT 59.454 34.615 0.00 0.00 0.00 3.55
44 45 6.038161 TGTGAATGAAAGGTTACAACAGTCAG 59.962 38.462 0.00 0.00 36.53 3.51
71 72 8.477419 AGGAAATGAGAAGGAATTTGTGTTTA 57.523 30.769 0.00 0.00 0.00 2.01
79 81 7.850501 AGAAGGAATTTGTGTTTATTTTTGCG 58.149 30.769 0.00 0.00 0.00 4.85
130 132 9.445786 AATTTGAACGACTTGTACAAAGTTATG 57.554 29.630 17.93 6.32 34.73 1.90
195 199 8.664798 TGAATAATTTGAGATGTTCGTACCAAG 58.335 33.333 0.00 0.00 0.00 3.61
633 675 4.405358 CCAGGCAGCCAAATCCTATAAAAA 59.595 41.667 15.80 0.00 0.00 1.94
948 990 2.864589 GCCGTTTCAATTCGCCGA 59.135 55.556 0.00 0.00 0.00 5.54
949 991 1.226018 GCCGTTTCAATTCGCCGAG 60.226 57.895 0.00 0.00 0.00 4.63
950 992 1.423845 CCGTTTCAATTCGCCGAGG 59.576 57.895 0.00 0.00 0.00 4.63
951 993 1.423845 CGTTTCAATTCGCCGAGGG 59.576 57.895 0.00 0.00 0.00 4.30
952 994 1.136774 GTTTCAATTCGCCGAGGGC 59.863 57.895 0.00 0.00 46.75 5.19
998 1166 1.572085 CGACGCCGATACGACCCTAT 61.572 60.000 0.00 0.00 38.22 2.57
1602 1771 1.405872 TGTAATCTATCGCCGGGTGT 58.594 50.000 2.18 0.00 0.00 4.16
1603 1772 1.758280 TGTAATCTATCGCCGGGTGTT 59.242 47.619 2.18 1.61 0.00 3.32
1662 1831 0.887247 TGGTGAAACGGGATGCATTG 59.113 50.000 0.00 0.00 38.12 2.82
1715 1884 1.149964 GGATACTTGCGTGCGGGTAC 61.150 60.000 0.00 0.00 0.00 3.34
1724 1893 1.787012 CGTGCGGGTACTGTTTAAGT 58.213 50.000 0.00 0.00 43.40 2.24
1761 1930 0.457443 GGTGCCTTTTAGCCTGATGC 59.543 55.000 0.00 0.00 41.71 3.91
1788 1980 7.656707 TTTTGCTTTGAAAATAGAGATTGGC 57.343 32.000 0.00 0.00 0.00 4.52
1818 2010 8.964420 TCGAATGTTGTTTCTTGGATTAATTC 57.036 30.769 0.00 0.00 0.00 2.17
1840 2037 3.189910 CGATGATGGGAATATTGGCACAG 59.810 47.826 0.00 0.00 42.39 3.66
1861 2058 5.126061 ACAGTTATGGGCATCATTGAAGAAC 59.874 40.000 0.00 0.00 37.30 3.01
1902 2099 8.117956 TCTAGTATCAAGGGTTCCTGTAGTTTA 58.882 37.037 0.00 0.00 32.13 2.01
1992 2189 7.799447 GCGTTGTGTTCATTACATGTTTTACTA 59.201 33.333 2.30 0.00 39.39 1.82
1993 2190 9.653067 CGTTGTGTTCATTACATGTTTTACTAA 57.347 29.630 2.30 0.00 39.39 2.24
2032 2236 0.976641 ACATCTGGAAGGCTCGTGAA 59.023 50.000 0.00 0.00 0.00 3.18
2035 2239 1.048601 TCTGGAAGGCTCGTGAAACT 58.951 50.000 0.00 0.00 31.75 2.66
2036 2240 1.000955 TCTGGAAGGCTCGTGAAACTC 59.999 52.381 0.00 0.00 31.75 3.01
2037 2241 0.756294 TGGAAGGCTCGTGAAACTCA 59.244 50.000 0.00 0.00 31.75 3.41
2039 2243 2.565391 TGGAAGGCTCGTGAAACTCATA 59.435 45.455 0.00 0.00 31.75 2.15
2040 2244 2.930682 GGAAGGCTCGTGAAACTCATAC 59.069 50.000 0.00 0.00 31.75 2.39
2059 2313 3.141767 ACTCCCTCTGGTTTACAAAGC 57.858 47.619 0.00 0.00 36.95 3.51
2084 2338 7.040892 GCAGATATTTGATCAAGCCATCAACTA 60.041 37.037 19.68 3.90 41.52 2.24
2216 2470 3.100817 CGACAATTATTTGCAAGCGGAG 58.899 45.455 0.00 0.00 36.22 4.63
2259 2513 6.529125 GCATCACACTTAAATTGAACCATCTG 59.471 38.462 0.00 0.00 0.00 2.90
2320 2576 5.486063 TGGAAGGCTGTTTGACCTACTAATA 59.514 40.000 0.00 0.00 34.31 0.98
2487 2743 1.064463 CCACCATGCAGACATACCCTT 60.064 52.381 0.00 0.00 33.67 3.95
2565 2821 5.517770 GTCTGCAAATGCCATTATGAAGAAC 59.482 40.000 10.15 4.50 41.18 3.01
2580 2836 1.613836 AGAACGACTCTTACGTGGGT 58.386 50.000 0.00 0.00 43.16 4.51
2644 2900 9.290988 TGAACTATAAGTGGCATTGTTTTTCTA 57.709 29.630 0.00 0.00 0.00 2.10
2999 3255 1.067142 AGGTTAAATCGTGCTCGCTCA 60.067 47.619 2.69 0.00 36.96 4.26
3004 3260 0.320771 AATCGTGCTCGCTCAAAGGT 60.321 50.000 2.69 0.00 36.96 3.50
3121 3377 4.822026 CTTAGTTCCGAGGACAAGAATGT 58.178 43.478 0.00 0.00 44.25 2.71
3122 3378 3.771577 AGTTCCGAGGACAAGAATGTT 57.228 42.857 0.00 0.00 40.74 2.71
3473 3729 4.940463 TCACGTACTCTTTTGCTTGTAGT 58.060 39.130 0.00 0.00 0.00 2.73
3532 3788 4.957296 TGAGACAAAACACTCTAAGACCC 58.043 43.478 0.00 0.00 34.65 4.46
3708 3964 9.364989 TGGCAGTTGCAGTAATAAAATAATTTC 57.635 29.630 6.43 0.00 44.36 2.17
3787 4043 6.821616 ATTTCTCTCTCTCTCTCTCTCTCT 57.178 41.667 0.00 0.00 0.00 3.10
3788 4044 7.921041 ATTTCTCTCTCTCTCTCTCTCTCTA 57.079 40.000 0.00 0.00 0.00 2.43
3789 4045 7.733773 TTTCTCTCTCTCTCTCTCTCTCTAA 57.266 40.000 0.00 0.00 0.00 2.10
3790 4046 7.921041 TTCTCTCTCTCTCTCTCTCTCTAAT 57.079 40.000 0.00 0.00 0.00 1.73
3791 4047 7.921041 TCTCTCTCTCTCTCTCTCTCTAATT 57.079 40.000 0.00 0.00 0.00 1.40
3792 4048 9.434275 TTCTCTCTCTCTCTCTCTCTCTAATTA 57.566 37.037 0.00 0.00 0.00 1.40
3793 4049 8.861086 TCTCTCTCTCTCTCTCTCTCTAATTAC 58.139 40.741 0.00 0.00 0.00 1.89
3794 4050 8.547481 TCTCTCTCTCTCTCTCTCTAATTACA 57.453 38.462 0.00 0.00 0.00 2.41
3795 4051 8.421784 TCTCTCTCTCTCTCTCTCTAATTACAC 58.578 40.741 0.00 0.00 0.00 2.90
3796 4052 8.084985 TCTCTCTCTCTCTCTCTAATTACACA 57.915 38.462 0.00 0.00 0.00 3.72
3797 4053 7.985184 TCTCTCTCTCTCTCTCTAATTACACAC 59.015 40.741 0.00 0.00 0.00 3.82
3798 4054 7.625469 TCTCTCTCTCTCTCTAATTACACACA 58.375 38.462 0.00 0.00 0.00 3.72
3799 4055 7.551262 TCTCTCTCTCTCTCTAATTACACACAC 59.449 40.741 0.00 0.00 0.00 3.82
3800 4056 7.168905 TCTCTCTCTCTCTAATTACACACACA 58.831 38.462 0.00 0.00 0.00 3.72
3801 4057 7.119992 TCTCTCTCTCTCTAATTACACACACAC 59.880 40.741 0.00 0.00 0.00 3.82
3802 4058 6.715264 TCTCTCTCTCTAATTACACACACACA 59.285 38.462 0.00 0.00 0.00 3.72
3803 4059 6.678878 TCTCTCTCTAATTACACACACACAC 58.321 40.000 0.00 0.00 0.00 3.82
3804 4060 6.264518 TCTCTCTCTAATTACACACACACACA 59.735 38.462 0.00 0.00 0.00 3.72
3805 4061 6.213677 TCTCTCTAATTACACACACACACAC 58.786 40.000 0.00 0.00 0.00 3.82
3806 4062 4.979815 TCTCTAATTACACACACACACACG 59.020 41.667 0.00 0.00 0.00 4.49
3807 4063 2.748461 AATTACACACACACACACGC 57.252 45.000 0.00 0.00 0.00 5.34
3808 4064 0.579630 ATTACACACACACACACGCG 59.420 50.000 3.53 3.53 0.00 6.01
3809 4065 2.026493 TTACACACACACACACGCGC 62.026 55.000 5.73 0.00 0.00 6.86
3810 4066 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
3859 4353 6.653320 TGGTGTTGGACTAGACATTACATTTC 59.347 38.462 0.00 0.00 0.00 2.17
3917 4411 3.146618 GCACTTCATTTGCCTCTGATG 57.853 47.619 0.00 0.00 33.58 3.07
3922 4416 4.885907 ACTTCATTTGCCTCTGATGTATGG 59.114 41.667 0.00 0.00 30.59 2.74
3931 4425 6.422333 TGCCTCTGATGTATGGAAAATGTAA 58.578 36.000 0.00 0.00 0.00 2.41
3977 4471 7.999679 CATGATCACATGTTTAATTGTACCCT 58.000 34.615 0.00 0.00 46.01 4.34
4003 4497 8.773404 AACATTACTCAACTAATGGTACTCAC 57.227 34.615 0.00 0.00 38.11 3.51
4050 4544 1.151668 GCAGATATGCACTAAGGCGG 58.848 55.000 7.61 0.00 36.28 6.13
4165 4661 5.794687 TTTGCATGTGATACCTACTTTCG 57.205 39.130 0.00 0.00 0.00 3.46
4264 4760 9.629878 TTAGTTTGATAGGTTGTTTTCCTTGTA 57.370 29.630 0.00 0.00 36.60 2.41
4279 4775 9.394477 GTTTTCCTTGTATGTGTTATGAACTTC 57.606 33.333 0.00 0.00 0.00 3.01
4346 4842 3.072944 CACAGCTTGAAAGAAGAGGGAG 58.927 50.000 0.00 0.00 0.00 4.30
4466 4964 9.567848 GATTGAAACGATGTGTAAAATGGTAAT 57.432 29.630 0.00 0.00 0.00 1.89
4516 5014 8.554490 TTAATCTAGCAGGGAAACTAATCTCT 57.446 34.615 0.00 0.00 0.00 3.10
4567 5065 0.106569 TGCCACATCCATTGCCCTAG 60.107 55.000 0.00 0.00 0.00 3.02
4581 5079 0.902531 CCCTAGTCGGTGTCACCATT 59.097 55.000 21.91 8.73 38.47 3.16
4583 5081 1.825474 CCTAGTCGGTGTCACCATTCT 59.175 52.381 21.91 16.68 38.47 2.40
4595 5093 1.337071 CACCATTCTCATGATGGCAGC 59.663 52.381 12.81 0.00 38.99 5.25
4607 5105 1.000283 GATGGCAGCGTGCTAGACTAT 60.000 52.381 9.31 0.00 44.28 2.12
4674 5172 2.549134 CCACCAGGTGTGTTCGACATAA 60.549 50.000 18.82 0.00 43.85 1.90
4748 5246 9.890629 TCACTCATAAAACTGATGCTAGTAAAT 57.109 29.630 0.00 0.00 0.00 1.40
4750 5248 8.616076 ACTCATAAAACTGATGCTAGTAAATGC 58.384 33.333 0.00 0.00 0.00 3.56
5118 5616 1.966451 GGCTTCCACGGAACCACAG 60.966 63.158 10.69 0.00 0.00 3.66
5580 6078 1.112315 ATGGTAGCTCCTCCTCAGCG 61.112 60.000 0.00 0.00 42.14 5.18
5694 6192 5.312079 GAGTATCCAGCTGAAGCCATATTT 58.688 41.667 17.39 0.00 43.38 1.40
5879 6377 1.201414 GGCCCGTAATGTTTGGACTTG 59.799 52.381 0.00 0.00 0.00 3.16
5914 6412 8.070171 CCTGTAGTTACTTGTTCACATGAAAAG 58.930 37.037 0.00 5.67 35.58 2.27
5922 6420 6.987992 ACTTGTTCACATGAAAAGCATTTGAT 59.012 30.769 0.00 0.00 41.79 2.57
6318 6820 4.952071 TTGGCATGTTGGAAAAATGAGA 57.048 36.364 0.00 0.00 44.52 3.27
6325 6827 6.753744 GCATGTTGGAAAAATGAGATTAGGAC 59.246 38.462 0.00 0.00 44.52 3.85
6346 6848 6.392842 AGGACTTATCATATTTTCCCCAGGAA 59.607 38.462 0.00 0.00 40.27 3.36
6473 6990 8.131731 TCAAATATGATTACACTCGTCTCAGAG 58.868 37.037 0.00 0.00 43.56 3.35
6485 7002 5.751028 ACTCGTCTCAGAGAAAGTTTCTTTG 59.249 40.000 23.69 23.69 41.75 2.77
6511 7028 6.342111 ACTCGATGTCCTCTTTTATTTCCTC 58.658 40.000 0.00 0.00 0.00 3.71
6557 7078 1.000955 TGCCTTTCTCTTGTCGACTCC 59.999 52.381 17.92 0.00 0.00 3.85
6580 7101 5.339611 CCGAAGAAAACATTTCGTGATTGAC 59.660 40.000 5.98 0.00 43.33 3.18
6581 7102 6.136071 CGAAGAAAACATTTCGTGATTGACT 58.864 36.000 0.00 0.00 40.79 3.41
6597 7118 6.203723 GTGATTGACTCTGCAGAAAAGTACTT 59.796 38.462 18.85 1.12 0.00 2.24
6617 7138 9.187996 AGTACTTCCTCTGTAAACTAATACTCC 57.812 37.037 0.00 0.00 0.00 3.85
6618 7139 7.421087 ACTTCCTCTGTAAACTAATACTCCC 57.579 40.000 0.00 0.00 0.00 4.30
6619 7140 7.190501 ACTTCCTCTGTAAACTAATACTCCCT 58.809 38.462 0.00 0.00 0.00 4.20
6620 7141 7.342541 ACTTCCTCTGTAAACTAATACTCCCTC 59.657 40.741 0.00 0.00 0.00 4.30
6621 7142 6.134754 TCCTCTGTAAACTAATACTCCCTCC 58.865 44.000 0.00 0.00 0.00 4.30
6624 7145 5.591877 TCTGTAAACTAATACTCCCTCCGTC 59.408 44.000 0.00 0.00 0.00 4.79
6625 7146 4.646492 TGTAAACTAATACTCCCTCCGTCC 59.354 45.833 0.00 0.00 0.00 4.79
6626 7147 3.393426 AACTAATACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
6627 7148 3.393426 ACTAATACTCCCTCCGTCCAA 57.607 47.619 0.00 0.00 0.00 3.53
6628 7149 3.716431 ACTAATACTCCCTCCGTCCAAA 58.284 45.455 0.00 0.00 0.00 3.28
6631 7152 4.586306 AATACTCCCTCCGTCCAAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
6632 7153 5.703730 AATACTCCCTCCGTCCAAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
6634 7155 3.951663 ACTCCCTCCGTCCAAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
6635 7156 3.329814 ACTCCCTCCGTCCAAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
6636 7157 3.681593 TCCCTCCGTCCAAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
6638 7159 3.439129 CCCTCCGTCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
6639 7160 4.324267 CCTCCGTCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
6640 7161 4.392138 CCTCCGTCCAAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
6641 7162 4.963373 TCCGTCCAAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
6642 7163 5.369833 TCCGTCCAAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
6643 7164 5.237779 TCCGTCCAAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
6644 7165 5.238650 CCGTCCAAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
6645 7166 6.425721 CCGTCCAAAAATAAGTGTCTCAACTA 59.574 38.462 0.00 0.00 0.00 2.24
6646 7167 7.288672 CGTCCAAAAATAAGTGTCTCAACTAC 58.711 38.462 0.00 0.00 0.00 2.73
6647 7168 7.170998 CGTCCAAAAATAAGTGTCTCAACTACT 59.829 37.037 0.00 0.00 0.00 2.57
6648 7169 9.485206 GTCCAAAAATAAGTGTCTCAACTACTA 57.515 33.333 0.00 0.00 0.00 1.82
6658 7179 9.790344 AAGTGTCTCAACTACTAAAGAGTACTA 57.210 33.333 0.00 0.00 37.10 1.82
6659 7180 9.218440 AGTGTCTCAACTACTAAAGAGTACTAC 57.782 37.037 0.00 0.00 37.10 2.73
6660 7181 8.997323 GTGTCTCAACTACTAAAGAGTACTACA 58.003 37.037 0.00 0.00 37.10 2.74
6681 7202 9.310716 ACTACAAAGTTGTACTAAGTTTGAGAC 57.689 33.333 27.03 0.00 40.96 3.36
6683 7204 7.971455 ACAAAGTTGTACTAAGTTTGAGACAC 58.029 34.615 27.03 0.00 40.96 3.67
6684 7205 7.822822 ACAAAGTTGTACTAAGTTTGAGACACT 59.177 33.333 27.03 13.05 40.96 3.55
6686 7207 9.880157 AAAGTTGTACTAAGTTTGAGACACTTA 57.120 29.630 8.92 0.00 35.95 2.24
6693 7214 8.166422 ACTAAGTTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 36.39 4.12
6694 7215 7.996644 ACTAAGTTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 36.39 4.37
6695 7216 6.635030 AGTTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
6696 7217 5.238650 AGTTTGAGACACTTATTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
6698 7219 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
6700 7221 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
6701 7222 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
6702 7223 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
6703 7224 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
6704 7225 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
6705 7226 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6706 7227 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
6707 7228 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
6708 7229 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
6710 7231 4.474303 TTGGGACGGAGGGAGTATAATA 57.526 45.455 0.00 0.00 0.00 0.98
6712 7233 5.801720 TGGGACGGAGGGAGTATAATATA 57.198 43.478 0.00 0.00 0.00 0.86
6713 7234 6.156554 TGGGACGGAGGGAGTATAATATAA 57.843 41.667 0.00 0.00 0.00 0.98
6714 7235 6.192773 TGGGACGGAGGGAGTATAATATAAG 58.807 44.000 0.00 0.00 0.00 1.73
6715 7236 6.011362 TGGGACGGAGGGAGTATAATATAAGA 60.011 42.308 0.00 0.00 0.00 2.10
6716 7237 6.546772 GGGACGGAGGGAGTATAATATAAGAG 59.453 46.154 0.00 0.00 0.00 2.85
6717 7238 6.039605 GGACGGAGGGAGTATAATATAAGAGC 59.960 46.154 0.00 0.00 0.00 4.09
6718 7239 5.589452 ACGGAGGGAGTATAATATAAGAGCG 59.411 44.000 0.00 0.00 0.00 5.03
6719 7240 5.589452 CGGAGGGAGTATAATATAAGAGCGT 59.411 44.000 0.00 0.00 0.00 5.07
6720 7241 6.095160 CGGAGGGAGTATAATATAAGAGCGTT 59.905 42.308 0.00 0.00 0.00 4.84
6721 7242 7.362747 CGGAGGGAGTATAATATAAGAGCGTTT 60.363 40.741 0.00 0.00 0.00 3.60
6722 7243 8.964772 GGAGGGAGTATAATATAAGAGCGTTTA 58.035 37.037 0.00 0.00 0.00 2.01
6724 7245 9.750783 AGGGAGTATAATATAAGAGCGTTTAGA 57.249 33.333 0.00 0.00 0.00 2.10
6755 7276 8.762481 AAAGTATGGTCTAAATGGAAATACCC 57.238 34.615 0.00 0.00 38.00 3.69
6756 7277 6.849151 AGTATGGTCTAAATGGAAATACCCC 58.151 40.000 0.00 0.00 38.00 4.95
6757 7278 4.529716 TGGTCTAAATGGAAATACCCCC 57.470 45.455 0.00 0.00 38.00 5.40
6853 7384 8.261522 TGTTAAAAATACCCAATTAGGATTGCC 58.738 33.333 0.00 0.00 41.06 4.52
6862 7393 4.074259 CAATTAGGATTGCCATCATCGGA 58.926 43.478 0.00 0.00 36.54 4.55
6884 7415 7.027161 CGGATTTGTTAACTTTGGATAACTGG 58.973 38.462 7.22 0.00 33.63 4.00
6887 7418 9.573133 GATTTGTTAACTTTGGATAACTGGATG 57.427 33.333 7.22 0.00 33.63 3.51
6891 7422 7.608761 TGTTAACTTTGGATAACTGGATGGTAC 59.391 37.037 7.22 0.00 33.63 3.34
6903 7434 3.725819 TGGTACACTGCACGTTGC 58.274 55.556 0.00 3.44 45.29 4.17
6904 7435 1.145156 TGGTACACTGCACGTTGCT 59.855 52.632 10.54 0.00 45.31 3.91
6905 7436 1.157257 TGGTACACTGCACGTTGCTG 61.157 55.000 12.71 12.71 45.31 4.41
6906 7437 1.082756 GTACACTGCACGTTGCTGC 60.083 57.895 13.72 0.00 44.72 5.25
6907 7438 1.522580 TACACTGCACGTTGCTGCA 60.523 52.632 0.00 0.00 44.72 4.41
6908 7439 0.884259 TACACTGCACGTTGCTGCAT 60.884 50.000 1.84 7.36 46.05 3.96
6909 7440 1.008194 CACTGCACGTTGCTGCATT 60.008 52.632 1.84 0.83 46.05 3.56
6910 7441 0.238025 CACTGCACGTTGCTGCATTA 59.762 50.000 1.84 0.00 46.05 1.90
6911 7442 0.950836 ACTGCACGTTGCTGCATTAA 59.049 45.000 1.84 0.00 46.05 1.40
6912 7443 1.541147 ACTGCACGTTGCTGCATTAAT 59.459 42.857 1.84 0.00 46.05 1.40
6913 7444 2.030007 ACTGCACGTTGCTGCATTAATT 60.030 40.909 1.84 0.00 46.05 1.40
6914 7445 2.988493 CTGCACGTTGCTGCATTAATTT 59.012 40.909 1.84 0.00 46.05 1.82
6915 7446 3.388308 TGCACGTTGCTGCATTAATTTT 58.612 36.364 1.84 0.00 45.31 1.82
6916 7447 3.183976 TGCACGTTGCTGCATTAATTTTG 59.816 39.130 1.84 0.00 45.31 2.44
6917 7448 3.184178 GCACGTTGCTGCATTAATTTTGT 59.816 39.130 1.84 0.00 40.96 2.83
6918 7449 4.663889 GCACGTTGCTGCATTAATTTTGTC 60.664 41.667 1.84 0.00 40.96 3.18
6919 7450 4.443725 CACGTTGCTGCATTAATTTTGTCA 59.556 37.500 1.84 0.00 0.00 3.58
6920 7451 5.046529 ACGTTGCTGCATTAATTTTGTCAA 58.953 33.333 1.84 0.00 0.00 3.18
6921 7452 5.521735 ACGTTGCTGCATTAATTTTGTCAAA 59.478 32.000 1.84 0.00 0.00 2.69
6922 7453 6.036517 ACGTTGCTGCATTAATTTTGTCAAAA 59.963 30.769 12.97 12.97 34.41 2.44
6923 7454 6.904011 CGTTGCTGCATTAATTTTGTCAAAAA 59.096 30.769 14.47 0.00 39.53 1.94
6993 7524 8.158169 ACATATGGATGTATACTGCTTGTTTG 57.842 34.615 7.80 0.00 44.77 2.93
6994 7525 4.963276 TGGATGTATACTGCTTGTTTGC 57.037 40.909 4.17 0.00 0.00 3.68
6995 7526 4.331108 TGGATGTATACTGCTTGTTTGCA 58.669 39.130 4.17 0.00 41.05 4.08
7005 7536 3.708890 TGCTTGTTTGCAGAGTTTCATG 58.291 40.909 0.00 0.00 38.12 3.07
7006 7537 3.054878 GCTTGTTTGCAGAGTTTCATGG 58.945 45.455 0.00 0.00 0.00 3.66
7007 7538 2.798976 TGTTTGCAGAGTTTCATGGC 57.201 45.000 0.00 0.00 0.00 4.40
7008 7539 1.001487 TGTTTGCAGAGTTTCATGGCG 60.001 47.619 0.00 0.00 0.00 5.69
7009 7540 1.266718 GTTTGCAGAGTTTCATGGCGA 59.733 47.619 0.00 0.00 0.00 5.54
7010 7541 1.603456 TTGCAGAGTTTCATGGCGAA 58.397 45.000 0.00 0.00 0.00 4.70
7011 7542 1.603456 TGCAGAGTTTCATGGCGAAA 58.397 45.000 0.00 0.00 41.40 3.46
7012 7543 2.161855 TGCAGAGTTTCATGGCGAAAT 58.838 42.857 0.00 0.00 45.21 2.17
7013 7544 3.342719 TGCAGAGTTTCATGGCGAAATA 58.657 40.909 0.00 0.00 45.21 1.40
7014 7545 3.126858 TGCAGAGTTTCATGGCGAAATAC 59.873 43.478 0.00 0.00 45.21 1.89
7015 7546 3.375299 GCAGAGTTTCATGGCGAAATACT 59.625 43.478 0.00 0.00 45.21 2.12
7016 7547 4.142600 GCAGAGTTTCATGGCGAAATACTT 60.143 41.667 0.00 0.00 45.21 2.24
7017 7548 5.619981 GCAGAGTTTCATGGCGAAATACTTT 60.620 40.000 0.00 0.00 45.21 2.66
7018 7549 6.381801 CAGAGTTTCATGGCGAAATACTTTT 58.618 36.000 0.00 0.00 45.21 2.27
7019 7550 6.863126 CAGAGTTTCATGGCGAAATACTTTTT 59.137 34.615 0.00 0.00 45.21 1.94
7048 7579 7.744087 TGAGCTACACAAAAGTGAATTATGT 57.256 32.000 2.22 0.00 0.00 2.29
7049 7580 8.840833 TGAGCTACACAAAAGTGAATTATGTA 57.159 30.769 2.22 0.00 0.00 2.29
7050 7581 9.448438 TGAGCTACACAAAAGTGAATTATGTAT 57.552 29.630 2.22 0.00 0.00 2.29
7051 7582 9.708222 GAGCTACACAAAAGTGAATTATGTATG 57.292 33.333 2.22 0.00 0.00 2.39
7052 7583 8.677300 AGCTACACAAAAGTGAATTATGTATGG 58.323 33.333 2.22 0.00 0.00 2.74
7053 7584 8.673711 GCTACACAAAAGTGAATTATGTATGGA 58.326 33.333 2.22 0.00 0.00 3.41
7063 7594 9.686683 AGTGAATTATGTATGGAAAAAGCTAGT 57.313 29.630 0.00 0.00 0.00 2.57
7070 7601 8.959705 ATGTATGGAAAAAGCTAGTTACCTAC 57.040 34.615 0.00 0.00 0.00 3.18
7071 7602 7.333323 TGTATGGAAAAAGCTAGTTACCTACC 58.667 38.462 0.00 0.00 0.00 3.18
7072 7603 4.824289 TGGAAAAAGCTAGTTACCTACCG 58.176 43.478 0.00 0.00 0.00 4.02
7073 7604 4.527816 TGGAAAAAGCTAGTTACCTACCGA 59.472 41.667 0.00 0.00 0.00 4.69
7074 7605 5.188359 TGGAAAAAGCTAGTTACCTACCGAT 59.812 40.000 0.00 0.00 0.00 4.18
7075 7606 5.752472 GGAAAAAGCTAGTTACCTACCGATC 59.248 44.000 0.00 0.00 0.00 3.69
7076 7607 6.406737 GGAAAAAGCTAGTTACCTACCGATCT 60.407 42.308 0.00 0.00 0.00 2.75
7077 7608 6.541934 AAAAGCTAGTTACCTACCGATCTT 57.458 37.500 0.00 0.00 0.00 2.40
7078 7609 6.541934 AAAGCTAGTTACCTACCGATCTTT 57.458 37.500 0.00 0.00 0.00 2.52
7079 7610 5.771153 AGCTAGTTACCTACCGATCTTTC 57.229 43.478 0.00 0.00 0.00 2.62
7080 7611 5.447757 AGCTAGTTACCTACCGATCTTTCT 58.552 41.667 0.00 0.00 0.00 2.52
7081 7612 5.532032 AGCTAGTTACCTACCGATCTTTCTC 59.468 44.000 0.00 0.00 0.00 2.87
7082 7613 5.532032 GCTAGTTACCTACCGATCTTTCTCT 59.468 44.000 0.00 0.00 0.00 3.10
7083 7614 6.293571 GCTAGTTACCTACCGATCTTTCTCTC 60.294 46.154 0.00 0.00 0.00 3.20
7084 7615 5.507637 AGTTACCTACCGATCTTTCTCTCA 58.492 41.667 0.00 0.00 0.00 3.27
7085 7616 5.357596 AGTTACCTACCGATCTTTCTCTCAC 59.642 44.000 0.00 0.00 0.00 3.51
7086 7617 3.698289 ACCTACCGATCTTTCTCTCACA 58.302 45.455 0.00 0.00 0.00 3.58
7087 7618 4.282496 ACCTACCGATCTTTCTCTCACAT 58.718 43.478 0.00 0.00 0.00 3.21
7088 7619 4.339814 ACCTACCGATCTTTCTCTCACATC 59.660 45.833 0.00 0.00 0.00 3.06
7089 7620 3.810310 ACCGATCTTTCTCTCACATCC 57.190 47.619 0.00 0.00 0.00 3.51
7090 7621 3.099905 ACCGATCTTTCTCTCACATCCA 58.900 45.455 0.00 0.00 0.00 3.41
7091 7622 3.708631 ACCGATCTTTCTCTCACATCCAT 59.291 43.478 0.00 0.00 0.00 3.41
7092 7623 4.202202 ACCGATCTTTCTCTCACATCCATC 60.202 45.833 0.00 0.00 0.00 3.51
7093 7624 4.202192 CCGATCTTTCTCTCACATCCATCA 60.202 45.833 0.00 0.00 0.00 3.07
7094 7625 4.744137 CGATCTTTCTCTCACATCCATCAC 59.256 45.833 0.00 0.00 0.00 3.06
7095 7626 4.115401 TCTTTCTCTCACATCCATCACG 57.885 45.455 0.00 0.00 0.00 4.35
7096 7627 3.511540 TCTTTCTCTCACATCCATCACGT 59.488 43.478 0.00 0.00 0.00 4.49
7097 7628 3.961480 TTCTCTCACATCCATCACGTT 57.039 42.857 0.00 0.00 0.00 3.99
7098 7629 3.510388 TCTCTCACATCCATCACGTTC 57.490 47.619 0.00 0.00 0.00 3.95
7099 7630 2.166459 TCTCTCACATCCATCACGTTCC 59.834 50.000 0.00 0.00 0.00 3.62
7100 7631 1.899142 TCTCACATCCATCACGTTCCA 59.101 47.619 0.00 0.00 0.00 3.53
7101 7632 2.002586 CTCACATCCATCACGTTCCAC 58.997 52.381 0.00 0.00 0.00 4.02
7111 7642 3.712655 CGTTCCACGCTTGACACA 58.287 55.556 0.00 0.00 33.65 3.72
7112 7643 1.275657 CGTTCCACGCTTGACACAC 59.724 57.895 0.00 0.00 33.65 3.82
7113 7644 1.647084 GTTCCACGCTTGACACACC 59.353 57.895 0.00 0.00 0.00 4.16
7114 7645 0.814010 GTTCCACGCTTGACACACCT 60.814 55.000 0.00 0.00 0.00 4.00
7115 7646 0.531974 TTCCACGCTTGACACACCTC 60.532 55.000 0.00 0.00 0.00 3.85
7116 7647 1.069765 CCACGCTTGACACACCTCT 59.930 57.895 0.00 0.00 0.00 3.69
7117 7648 0.532862 CCACGCTTGACACACCTCTT 60.533 55.000 0.00 0.00 0.00 2.85
7118 7649 1.270094 CCACGCTTGACACACCTCTTA 60.270 52.381 0.00 0.00 0.00 2.10
7119 7650 1.792949 CACGCTTGACACACCTCTTAC 59.207 52.381 0.00 0.00 0.00 2.34
7120 7651 1.411246 ACGCTTGACACACCTCTTACA 59.589 47.619 0.00 0.00 0.00 2.41
7121 7652 1.792949 CGCTTGACACACCTCTTACAC 59.207 52.381 0.00 0.00 0.00 2.90
7122 7653 2.545952 CGCTTGACACACCTCTTACACT 60.546 50.000 0.00 0.00 0.00 3.55
7123 7654 3.467803 GCTTGACACACCTCTTACACTT 58.532 45.455 0.00 0.00 0.00 3.16
7124 7655 3.248602 GCTTGACACACCTCTTACACTTG 59.751 47.826 0.00 0.00 0.00 3.16
7125 7656 4.693283 CTTGACACACCTCTTACACTTGA 58.307 43.478 0.00 0.00 0.00 3.02
7126 7657 4.054780 TGACACACCTCTTACACTTGAC 57.945 45.455 0.00 0.00 0.00 3.18
7127 7658 3.050619 GACACACCTCTTACACTTGACG 58.949 50.000 0.00 0.00 0.00 4.35
7128 7659 1.792949 CACACCTCTTACACTTGACGC 59.207 52.381 0.00 0.00 0.00 5.19
7129 7660 1.411246 ACACCTCTTACACTTGACGCA 59.589 47.619 0.00 0.00 0.00 5.24
7130 7661 1.792949 CACCTCTTACACTTGACGCAC 59.207 52.381 0.00 0.00 0.00 5.34
7131 7662 1.270147 ACCTCTTACACTTGACGCACC 60.270 52.381 0.00 0.00 0.00 5.01
7132 7663 1.000955 CCTCTTACACTTGACGCACCT 59.999 52.381 0.00 0.00 0.00 4.00
7133 7664 2.329379 CTCTTACACTTGACGCACCTC 58.671 52.381 0.00 0.00 0.00 3.85
7134 7665 1.961394 TCTTACACTTGACGCACCTCT 59.039 47.619 0.00 0.00 0.00 3.69
7135 7666 2.364324 TCTTACACTTGACGCACCTCTT 59.636 45.455 0.00 0.00 0.00 2.85
7136 7667 2.148916 TACACTTGACGCACCTCTTG 57.851 50.000 0.00 0.00 0.00 3.02
7137 7668 0.464036 ACACTTGACGCACCTCTTGA 59.536 50.000 0.00 0.00 0.00 3.02
7138 7669 1.070758 ACACTTGACGCACCTCTTGAT 59.929 47.619 0.00 0.00 0.00 2.57
7139 7670 1.462283 CACTTGACGCACCTCTTGATG 59.538 52.381 0.00 0.00 0.00 3.07
7140 7671 1.081892 CTTGACGCACCTCTTGATGG 58.918 55.000 0.00 0.00 0.00 3.51
7141 7672 0.684535 TTGACGCACCTCTTGATGGA 59.315 50.000 0.00 0.00 0.00 3.41
7142 7673 0.037326 TGACGCACCTCTTGATGGAC 60.037 55.000 0.00 0.00 0.00 4.02
7143 7674 0.741221 GACGCACCTCTTGATGGACC 60.741 60.000 0.00 0.00 0.00 4.46
7144 7675 1.811266 CGCACCTCTTGATGGACCG 60.811 63.158 0.00 0.00 0.00 4.79
7145 7676 1.596934 GCACCTCTTGATGGACCGA 59.403 57.895 0.00 0.00 0.00 4.69
7146 7677 0.741221 GCACCTCTTGATGGACCGAC 60.741 60.000 0.00 0.00 0.00 4.79
7147 7678 0.608130 CACCTCTTGATGGACCGACA 59.392 55.000 0.00 0.00 0.00 4.35
7148 7679 0.608640 ACCTCTTGATGGACCGACAC 59.391 55.000 0.00 0.00 0.00 3.67
7149 7680 0.608130 CCTCTTGATGGACCGACACA 59.392 55.000 0.00 0.00 0.00 3.72
7150 7681 1.001974 CCTCTTGATGGACCGACACAA 59.998 52.381 0.00 0.00 0.00 3.33
7151 7682 2.069273 CTCTTGATGGACCGACACAAC 58.931 52.381 0.00 0.00 0.00 3.32
7152 7683 0.790207 CTTGATGGACCGACACAACG 59.210 55.000 0.00 0.00 0.00 4.10
7153 7684 1.225376 TTGATGGACCGACACAACGC 61.225 55.000 0.00 0.00 0.00 4.84
7154 7685 1.374252 GATGGACCGACACAACGCT 60.374 57.895 0.00 0.00 0.00 5.07
7155 7686 0.949105 GATGGACCGACACAACGCTT 60.949 55.000 0.00 0.00 0.00 4.68
7156 7687 0.949105 ATGGACCGACACAACGCTTC 60.949 55.000 0.00 0.00 0.00 3.86
7157 7688 1.300697 GGACCGACACAACGCTTCT 60.301 57.895 0.00 0.00 0.00 2.85
7158 7689 1.282930 GGACCGACACAACGCTTCTC 61.283 60.000 0.00 0.00 0.00 2.87
7159 7690 0.318784 GACCGACACAACGCTTCTCT 60.319 55.000 0.00 0.00 0.00 3.10
7160 7691 0.104304 ACCGACACAACGCTTCTCTT 59.896 50.000 0.00 0.00 0.00 2.85
7161 7692 0.784778 CCGACACAACGCTTCTCTTC 59.215 55.000 0.00 0.00 0.00 2.87
7162 7693 1.487482 CGACACAACGCTTCTCTTCA 58.513 50.000 0.00 0.00 0.00 3.02
7163 7694 2.061773 CGACACAACGCTTCTCTTCAT 58.938 47.619 0.00 0.00 0.00 2.57
7164 7695 2.091277 CGACACAACGCTTCTCTTCATC 59.909 50.000 0.00 0.00 0.00 2.92
7165 7696 3.321497 GACACAACGCTTCTCTTCATCT 58.679 45.455 0.00 0.00 0.00 2.90
7166 7697 3.733337 ACACAACGCTTCTCTTCATCTT 58.267 40.909 0.00 0.00 0.00 2.40
7167 7698 3.496130 ACACAACGCTTCTCTTCATCTTG 59.504 43.478 0.00 0.00 0.00 3.02
7168 7699 3.742882 CACAACGCTTCTCTTCATCTTGA 59.257 43.478 0.00 0.00 0.00 3.02
7169 7700 4.391216 CACAACGCTTCTCTTCATCTTGAT 59.609 41.667 0.00 0.00 0.00 2.57
7170 7701 4.391216 ACAACGCTTCTCTTCATCTTGATG 59.609 41.667 4.35 4.35 0.00 3.07
7171 7702 3.529533 ACGCTTCTCTTCATCTTGATGG 58.470 45.455 10.29 0.00 0.00 3.51
7172 7703 2.871022 CGCTTCTCTTCATCTTGATGGG 59.129 50.000 10.29 4.94 0.00 4.00
7173 7704 2.617774 GCTTCTCTTCATCTTGATGGGC 59.382 50.000 10.29 2.12 0.00 5.36
7174 7705 3.882444 CTTCTCTTCATCTTGATGGGCA 58.118 45.455 10.29 0.00 0.00 5.36
7175 7706 4.267536 CTTCTCTTCATCTTGATGGGCAA 58.732 43.478 10.29 0.00 34.73 4.52
7181 7712 2.180017 CTTGATGGGCAAGCGCAC 59.820 61.111 11.47 8.90 46.67 5.34
7182 7713 2.282391 TTGATGGGCAAGCGCACT 60.282 55.556 11.47 4.12 44.28 4.40
7183 7714 2.537792 CTTGATGGGCAAGCGCACTG 62.538 60.000 11.47 7.79 46.67 3.66
7184 7715 4.487412 GATGGGCAAGCGCACTGC 62.487 66.667 22.25 22.25 44.28 4.40
7194 7725 3.780925 GCGCACTGCTTTTCTTCAT 57.219 47.368 0.30 0.00 41.73 2.57
7195 7726 1.611043 GCGCACTGCTTTTCTTCATC 58.389 50.000 0.30 0.00 41.73 2.92
7196 7727 1.730446 GCGCACTGCTTTTCTTCATCC 60.730 52.381 0.30 0.00 41.73 3.51
7197 7728 1.135575 CGCACTGCTTTTCTTCATCCC 60.136 52.381 0.00 0.00 0.00 3.85
7198 7729 2.165998 GCACTGCTTTTCTTCATCCCT 58.834 47.619 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.786121 AATTCCTTCTCATTTCCTCCTGA 57.214 39.130 0.00 0.00 0.00 3.86
44 45 5.478332 ACACAAATTCCTTCTCATTTCCTCC 59.522 40.000 0.00 0.00 0.00 4.30
71 72 3.980775 CCACAAACGATCTTCGCAAAAAT 59.019 39.130 0.00 0.00 45.12 1.82
79 81 8.420374 TCATATAAAGACCACAAACGATCTTC 57.580 34.615 0.00 0.00 31.05 2.87
195 199 8.391106 GTTCAACATAGTGAGTACATTCCAATC 58.609 37.037 0.00 0.00 0.00 2.67
209 243 9.871238 ACTATAGTACCAAAGTTCAACATAGTG 57.129 33.333 2.75 0.00 0.00 2.74
346 383 9.646522 AATGCCCTTGAAGACTGTTTATATATT 57.353 29.630 0.00 0.00 0.00 1.28
932 974 1.423845 CCTCGGCGAATTGAAACGG 59.576 57.895 12.13 1.54 0.00 4.44
933 975 1.423845 CCCTCGGCGAATTGAAACG 59.576 57.895 12.13 0.00 0.00 3.60
934 976 1.136774 GCCCTCGGCGAATTGAAAC 59.863 57.895 12.13 0.00 39.62 2.78
935 977 3.585856 GCCCTCGGCGAATTGAAA 58.414 55.556 12.13 0.00 39.62 2.69
951 993 3.423154 CTGGGTCGGCGAGTTTGC 61.423 66.667 11.20 0.00 0.00 3.68
952 994 3.423154 GCTGGGTCGGCGAGTTTG 61.423 66.667 11.20 2.40 0.00 2.93
953 995 3.591254 GAGCTGGGTCGGCGAGTTT 62.591 63.158 11.20 0.00 41.21 2.66
954 996 4.070552 GAGCTGGGTCGGCGAGTT 62.071 66.667 11.20 0.00 41.21 3.01
956 998 3.997064 CTTGAGCTGGGTCGGCGAG 62.997 68.421 11.20 0.00 41.21 5.03
957 999 4.069232 CTTGAGCTGGGTCGGCGA 62.069 66.667 4.99 4.99 41.21 5.54
958 1000 3.589654 TTCTTGAGCTGGGTCGGCG 62.590 63.158 0.00 0.00 41.21 6.46
959 1001 0.678048 ATTTCTTGAGCTGGGTCGGC 60.678 55.000 0.00 0.00 35.73 5.54
960 1002 1.373570 GATTTCTTGAGCTGGGTCGG 58.626 55.000 0.00 0.00 0.00 4.79
961 1003 1.002366 CGATTTCTTGAGCTGGGTCG 58.998 55.000 0.00 0.00 0.00 4.79
998 1166 2.928988 ATCAGTCGGCGAGATGGGGA 62.929 60.000 11.20 2.00 0.00 4.81
1662 1831 3.165058 TGTATCTCCAGCGTGAATCAC 57.835 47.619 2.75 2.75 0.00 3.06
1715 1884 7.230712 ACAAAACCCTAATCTCCACTTAAACAG 59.769 37.037 0.00 0.00 0.00 3.16
1724 1893 3.761897 CACCACAAAACCCTAATCTCCA 58.238 45.455 0.00 0.00 0.00 3.86
1761 1930 8.589629 CCAATCTCTATTTTCAAAGCAAAATCG 58.410 33.333 0.00 0.00 37.23 3.34
1788 1980 5.448438 TCCAAGAAACAACATTCGAATTCG 58.552 37.500 21.78 21.78 41.45 3.34
1818 2010 3.148412 TGTGCCAATATTCCCATCATCG 58.852 45.455 0.00 0.00 0.00 3.84
1840 2037 5.357878 TGAGTTCTTCAATGATGCCCATAAC 59.642 40.000 0.00 0.00 34.45 1.89
2032 2236 5.091552 TGTAAACCAGAGGGAGTATGAGTT 58.908 41.667 0.00 0.00 38.05 3.01
2035 2239 5.570844 GCTTTGTAAACCAGAGGGAGTATGA 60.571 44.000 0.00 0.00 38.05 2.15
2036 2240 4.636206 GCTTTGTAAACCAGAGGGAGTATG 59.364 45.833 0.00 0.00 38.05 2.39
2037 2241 4.288626 TGCTTTGTAAACCAGAGGGAGTAT 59.711 41.667 0.00 0.00 38.05 2.12
2039 2243 2.441750 TGCTTTGTAAACCAGAGGGAGT 59.558 45.455 0.00 0.00 38.05 3.85
2040 2244 3.077359 CTGCTTTGTAAACCAGAGGGAG 58.923 50.000 0.00 0.00 38.05 4.30
2059 2313 7.273320 AGTTGATGGCTTGATCAAATATCTG 57.727 36.000 9.88 0.00 42.58 2.90
2216 2470 3.067684 TGCCCTTTTAGCAAGGTACTC 57.932 47.619 1.03 0.00 38.49 2.59
2259 2513 5.063564 GTGCTGCTTCCTAGTACAACAATAC 59.936 44.000 0.00 0.00 32.04 1.89
2289 2545 5.007682 GGTCAAACAGCCTTCCATACTAAA 58.992 41.667 0.00 0.00 0.00 1.85
2339 2595 2.855209 CCAATGTTGGCCAATTCCAA 57.145 45.000 23.66 5.85 42.21 3.53
2405 2661 6.874288 TTTTAGGATGGTTGCCAATTTTTG 57.126 33.333 0.00 0.00 36.95 2.44
2408 2664 6.430616 CACAATTTTAGGATGGTTGCCAATTT 59.569 34.615 0.00 0.00 36.95 1.82
2487 2743 8.842358 AATCACCGTAATTGAAAAGAAGTAGA 57.158 30.769 0.00 0.00 0.00 2.59
2565 2821 0.389426 CCCAACCCACGTAAGAGTCG 60.389 60.000 0.00 0.00 43.62 4.18
2644 2900 8.464404 GGATAATATATGACAGCATTGCAACAT 58.536 33.333 11.91 14.13 35.94 2.71
2999 3255 5.546499 TCCCTTACTTGATGTGTCTACCTTT 59.454 40.000 0.00 0.00 0.00 3.11
3004 3260 7.973048 ATTACTCCCTTACTTGATGTGTCTA 57.027 36.000 0.00 0.00 0.00 2.59
3121 3377 4.383118 GGACTCTGCTAATGTCTTGCCTAA 60.383 45.833 0.00 0.00 0.00 2.69
3122 3378 3.133003 GGACTCTGCTAATGTCTTGCCTA 59.867 47.826 0.00 0.00 0.00 3.93
3396 3652 9.460019 TCAATGAGAACATTATAAACACCATGA 57.540 29.630 0.00 0.00 43.76 3.07
3532 3788 6.906659 AGATTTGCTTGTTGTAGAAGTCATG 58.093 36.000 0.00 0.00 0.00 3.07
3604 3860 5.836358 ACCATTCTTGCAGGTAAAAGGTAAA 59.164 36.000 0.00 0.00 32.92 2.01
3605 3861 5.390387 ACCATTCTTGCAGGTAAAAGGTAA 58.610 37.500 0.00 0.00 32.92 2.85
3765 4021 7.733773 TTAGAGAGAGAGAGAGAGAGAGAAA 57.266 40.000 0.00 0.00 0.00 2.52
3766 4022 7.921041 ATTAGAGAGAGAGAGAGAGAGAGAA 57.079 40.000 0.00 0.00 0.00 2.87
3767 4023 7.921041 AATTAGAGAGAGAGAGAGAGAGAGA 57.079 40.000 0.00 0.00 0.00 3.10
3768 4024 8.642432 TGTAATTAGAGAGAGAGAGAGAGAGAG 58.358 40.741 0.00 0.00 0.00 3.20
3769 4025 8.421784 GTGTAATTAGAGAGAGAGAGAGAGAGA 58.578 40.741 0.00 0.00 0.00 3.10
3770 4026 8.204160 TGTGTAATTAGAGAGAGAGAGAGAGAG 58.796 40.741 0.00 0.00 0.00 3.20
3771 4027 7.985184 GTGTGTAATTAGAGAGAGAGAGAGAGA 59.015 40.741 0.00 0.00 0.00 3.10
3772 4028 7.768582 TGTGTGTAATTAGAGAGAGAGAGAGAG 59.231 40.741 0.00 0.00 0.00 3.20
3773 4029 7.551262 GTGTGTGTAATTAGAGAGAGAGAGAGA 59.449 40.741 0.00 0.00 0.00 3.10
3774 4030 7.335673 TGTGTGTGTAATTAGAGAGAGAGAGAG 59.664 40.741 0.00 0.00 0.00 3.20
3775 4031 7.119992 GTGTGTGTGTAATTAGAGAGAGAGAGA 59.880 40.741 0.00 0.00 0.00 3.10
3776 4032 7.094592 TGTGTGTGTGTAATTAGAGAGAGAGAG 60.095 40.741 0.00 0.00 0.00 3.20
3777 4033 6.715264 TGTGTGTGTGTAATTAGAGAGAGAGA 59.285 38.462 0.00 0.00 0.00 3.10
3778 4034 6.804295 GTGTGTGTGTGTAATTAGAGAGAGAG 59.196 42.308 0.00 0.00 0.00 3.20
3779 4035 6.264518 TGTGTGTGTGTGTAATTAGAGAGAGA 59.735 38.462 0.00 0.00 0.00 3.10
3780 4036 6.363626 GTGTGTGTGTGTGTAATTAGAGAGAG 59.636 42.308 0.00 0.00 0.00 3.20
3781 4037 6.213677 GTGTGTGTGTGTGTAATTAGAGAGA 58.786 40.000 0.00 0.00 0.00 3.10
3782 4038 5.117135 CGTGTGTGTGTGTGTAATTAGAGAG 59.883 44.000 0.00 0.00 0.00 3.20
3783 4039 4.979815 CGTGTGTGTGTGTGTAATTAGAGA 59.020 41.667 0.00 0.00 0.00 3.10
3784 4040 4.376008 GCGTGTGTGTGTGTGTAATTAGAG 60.376 45.833 0.00 0.00 0.00 2.43
3785 4041 3.491639 GCGTGTGTGTGTGTGTAATTAGA 59.508 43.478 0.00 0.00 0.00 2.10
3786 4042 3.660646 CGCGTGTGTGTGTGTGTAATTAG 60.661 47.826 0.00 0.00 0.00 1.73
3787 4043 2.218987 CGCGTGTGTGTGTGTGTAATTA 59.781 45.455 0.00 0.00 0.00 1.40
3788 4044 1.004398 CGCGTGTGTGTGTGTGTAATT 60.004 47.619 0.00 0.00 0.00 1.40
3789 4045 0.579630 CGCGTGTGTGTGTGTGTAAT 59.420 50.000 0.00 0.00 0.00 1.89
3790 4046 1.999819 CGCGTGTGTGTGTGTGTAA 59.000 52.632 0.00 0.00 0.00 2.41
3791 4047 2.518312 GCGCGTGTGTGTGTGTGTA 61.518 57.895 8.43 0.00 0.00 2.90
3792 4048 3.860125 GCGCGTGTGTGTGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
3793 4049 4.918060 CGCGCGTGTGTGTGTGTG 62.918 66.667 24.19 0.00 0.00 3.82
3818 4074 2.276058 CAAGAGTTAAGCGCGCGC 60.276 61.111 45.10 45.10 42.33 6.86
3819 4075 2.380410 ACCAAGAGTTAAGCGCGCG 61.380 57.895 28.44 28.44 0.00 6.86
3820 4076 1.132640 CACCAAGAGTTAAGCGCGC 59.867 57.895 26.66 26.66 0.00 6.86
3821 4077 0.865769 AACACCAAGAGTTAAGCGCG 59.134 50.000 0.00 0.00 0.00 6.86
3822 4078 1.069227 CCAACACCAAGAGTTAAGCGC 60.069 52.381 0.00 0.00 0.00 5.92
3823 4079 2.223377 GTCCAACACCAAGAGTTAAGCG 59.777 50.000 0.00 0.00 0.00 4.68
3824 4080 3.477530 AGTCCAACACCAAGAGTTAAGC 58.522 45.455 0.00 0.00 0.00 3.09
3825 4081 5.927115 GTCTAGTCCAACACCAAGAGTTAAG 59.073 44.000 0.00 0.00 0.00 1.85
3897 4391 2.490903 ACATCAGAGGCAAATGAAGTGC 59.509 45.455 0.00 0.00 41.45 4.40
3922 4416 9.387123 GAGCAGAAAATCCGATATTACATTTTC 57.613 33.333 13.76 13.76 42.08 2.29
3977 4471 9.865321 GTGAGTACCATTAGTTGAGTAATGTTA 57.135 33.333 14.33 5.26 38.31 2.41
4002 4496 4.449068 CAGCGAAATATAAAGCATCTCCGT 59.551 41.667 0.00 0.00 0.00 4.69
4003 4497 4.143030 CCAGCGAAATATAAAGCATCTCCG 60.143 45.833 0.00 0.00 0.00 4.63
4050 4544 4.518970 TCCACTTCCAAAGCATGTTTAGAC 59.481 41.667 0.00 0.00 0.00 2.59
4165 4661 1.532868 AGAGTGAAACATGAAGCGCAC 59.467 47.619 11.47 3.52 41.43 5.34
4206 4702 4.902448 AGTAGCCCTTAGGAATACTTCAGG 59.098 45.833 0.00 0.00 34.98 3.86
4264 4760 3.921677 ACCGTCGAAGTTCATAACACAT 58.078 40.909 3.32 0.00 0.00 3.21
4279 4775 0.887387 ACCCATTGGTCAAACCGTCG 60.887 55.000 1.20 0.00 43.06 5.12
4346 4842 7.533289 AGTGATAAATCCTTCTCTACTAGGC 57.467 40.000 0.00 0.00 0.00 3.93
4409 4905 6.538945 TGTTATTAGGCACACACATCTCTA 57.461 37.500 0.00 0.00 0.00 2.43
4528 5026 4.309099 GCAACAGCAATCAAATCCAAAGA 58.691 39.130 0.00 0.00 0.00 2.52
4531 5029 2.367894 TGGCAACAGCAATCAAATCCAA 59.632 40.909 0.00 0.00 46.17 3.53
4581 5079 1.816679 GCACGCTGCCATCATGAGA 60.817 57.895 0.09 0.00 37.42 3.27
4583 5081 0.531311 CTAGCACGCTGCCATCATGA 60.531 55.000 0.00 0.00 46.52 3.07
4595 5093 6.914259 TCCAGATAATCAATAGTCTAGCACG 58.086 40.000 0.00 0.00 0.00 5.34
4607 5105 6.065976 ACAAGGTCACATCCAGATAATCAA 57.934 37.500 0.00 0.00 0.00 2.57
4748 5246 2.492881 CAATTGCCAGAACCATGTAGCA 59.507 45.455 0.00 0.00 0.00 3.49
4750 5248 3.507233 ACACAATTGCCAGAACCATGTAG 59.493 43.478 5.05 0.00 0.00 2.74
5108 5606 0.035458 AGGCTTCTTCTGTGGTTCCG 59.965 55.000 0.00 0.00 0.00 4.30
5118 5616 0.177836 GGCTGAGAGGAGGCTTCTTC 59.822 60.000 0.00 0.00 35.65 2.87
5580 6078 2.293677 CCCATCATCTGAATCTGCAAGC 59.706 50.000 0.00 0.00 0.00 4.01
5694 6192 3.261643 TGAAAGCCAGATCTTCTGCAGTA 59.738 43.478 14.67 2.58 42.98 2.74
5812 6310 3.921021 CGTCACTAGAATGTGAAGGACAC 59.079 47.826 0.00 0.00 46.77 3.67
5834 6332 6.744112 TCAAGTTTTGGTGAATTGGACATAC 58.256 36.000 0.00 0.00 0.00 2.39
5839 6337 3.069443 GCCTCAAGTTTTGGTGAATTGGA 59.931 43.478 0.00 0.00 0.00 3.53
5879 6377 9.595823 TGAACAAGTAACTACAGGCTATTAATC 57.404 33.333 0.00 0.00 0.00 1.75
5947 6445 0.167470 CTCACCTGCACAAGATTGCG 59.833 55.000 0.00 0.00 46.20 4.85
6179 6678 1.936547 GCCAAGGACTCTTTGCTATCG 59.063 52.381 0.00 0.00 38.27 2.92
6318 6820 8.394040 CCTGGGGAAAATATGATAAGTCCTAAT 58.606 37.037 0.00 0.00 0.00 1.73
6325 6827 8.170061 TGGTATTCCTGGGGAAAATATGATAAG 58.830 37.037 3.01 0.00 45.41 1.73
6338 6840 3.204382 ACCTACATTTGGTATTCCTGGGG 59.796 47.826 0.00 0.00 35.80 4.96
6346 6848 4.164221 CAGGACAGGACCTACATTTGGTAT 59.836 45.833 0.00 0.00 38.32 2.73
6473 6990 6.017852 AGGACATCGAGTTCAAAGAAACTTTC 60.018 38.462 0.00 0.00 39.55 2.62
6485 7002 6.819146 AGGAAATAAAAGAGGACATCGAGTTC 59.181 38.462 0.00 0.00 0.00 3.01
6511 7028 6.600350 CCATCAAATAGCGAATCAATCTCAG 58.400 40.000 0.00 0.00 0.00 3.35
6580 7101 4.928615 CAGAGGAAGTACTTTTCTGCAGAG 59.071 45.833 25.41 8.25 32.19 3.35
6581 7102 4.345257 ACAGAGGAAGTACTTTTCTGCAGA 59.655 41.667 30.96 13.74 37.73 4.26
6597 7118 6.134754 GGAGGGAGTATTAGTTTACAGAGGA 58.865 44.000 0.00 0.00 0.00 3.71
6614 7135 3.689649 CACTTATTTTTGGACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
6615 7136 3.073356 ACACTTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
6616 7137 3.418047 ACACTTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
6617 7138 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
6618 7139 4.994852 TGAGACACTTATTTTTGGACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
6619 7140 4.963373 TGAGACACTTATTTTTGGACGGA 58.037 39.130 0.00 0.00 0.00 4.69
6620 7141 5.238650 AGTTGAGACACTTATTTTTGGACGG 59.761 40.000 0.00 0.00 0.00 4.79
6621 7142 6.300354 AGTTGAGACACTTATTTTTGGACG 57.700 37.500 0.00 0.00 0.00 4.79
6631 7152 9.790344 AGTACTCTTTAGTAGTTGAGACACTTA 57.210 33.333 0.00 0.00 38.47 2.24
6632 7153 8.694581 AGTACTCTTTAGTAGTTGAGACACTT 57.305 34.615 0.00 0.00 38.47 3.16
6634 7155 8.997323 TGTAGTACTCTTTAGTAGTTGAGACAC 58.003 37.037 0.00 0.00 41.27 3.67
6635 7156 9.565090 TTGTAGTACTCTTTAGTAGTTGAGACA 57.435 33.333 0.00 0.00 41.27 3.41
6658 7179 7.822822 AGTGTCTCAAACTTAGTACAACTTTGT 59.177 33.333 0.00 0.00 44.86 2.83
6659 7180 8.197988 AGTGTCTCAAACTTAGTACAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
6660 7181 8.788325 AAGTGTCTCAAACTTAGTACAACTTT 57.212 30.769 0.00 0.00 36.11 2.66
6667 7188 9.280174 CCCAAAATAAGTGTCTCAAACTTAGTA 57.720 33.333 2.85 0.00 41.95 1.82
6669 7190 8.290325 GTCCCAAAATAAGTGTCTCAAACTTAG 58.710 37.037 2.85 0.00 41.95 2.18
6671 7192 6.238648 CGTCCCAAAATAAGTGTCTCAAACTT 60.239 38.462 0.00 0.00 40.82 2.66
6673 7194 5.449304 CGTCCCAAAATAAGTGTCTCAAAC 58.551 41.667 0.00 0.00 0.00 2.93
6675 7196 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
6676 7197 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
6677 7198 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
6678 7199 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
6679 7200 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
6680 7201 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
6681 7202 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
6683 7204 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
6684 7205 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
6686 7207 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6687 7208 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
6688 7209 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
6691 7212 6.430007 TCTTATATTATACTCCCTCCGTCCC 58.570 44.000 0.00 0.00 0.00 4.46
6692 7213 6.039605 GCTCTTATATTATACTCCCTCCGTCC 59.960 46.154 0.00 0.00 0.00 4.79
6693 7214 6.238429 CGCTCTTATATTATACTCCCTCCGTC 60.238 46.154 0.00 0.00 0.00 4.79
6694 7215 5.589452 CGCTCTTATATTATACTCCCTCCGT 59.411 44.000 0.00 0.00 0.00 4.69
6695 7216 5.589452 ACGCTCTTATATTATACTCCCTCCG 59.411 44.000 0.00 0.00 0.00 4.63
6696 7217 7.407393 AACGCTCTTATATTATACTCCCTCC 57.593 40.000 0.00 0.00 0.00 4.30
6698 7219 9.750783 TCTAAACGCTCTTATATTATACTCCCT 57.249 33.333 0.00 0.00 0.00 4.20
6729 7250 9.856162 GGGTATTTCCATTTAGACCATACTTTA 57.144 33.333 0.00 0.00 38.11 1.85
6732 7253 6.183361 GGGGGTATTTCCATTTAGACCATACT 60.183 42.308 0.00 0.00 38.11 2.12
6733 7254 6.008331 GGGGGTATTTCCATTTAGACCATAC 58.992 44.000 0.00 0.00 38.11 2.39
6734 7255 5.920664 AGGGGGTATTTCCATTTAGACCATA 59.079 40.000 0.00 0.00 38.11 2.74
6735 7256 4.737092 AGGGGGTATTTCCATTTAGACCAT 59.263 41.667 0.00 0.00 38.11 3.55
6736 7257 4.123745 AGGGGGTATTTCCATTTAGACCA 58.876 43.478 0.00 0.00 38.11 4.02
6737 7258 4.808767 AGGGGGTATTTCCATTTAGACC 57.191 45.455 0.00 0.00 38.11 3.85
6738 7259 7.295340 ACATTAGGGGGTATTTCCATTTAGAC 58.705 38.462 0.00 0.00 38.11 2.59
6740 7261 9.649316 TTAACATTAGGGGGTATTTCCATTTAG 57.351 33.333 0.00 0.00 38.11 1.85
6744 7265 9.768215 CATATTAACATTAGGGGGTATTTCCAT 57.232 33.333 0.00 0.00 38.11 3.41
6745 7266 8.738592 ACATATTAACATTAGGGGGTATTTCCA 58.261 33.333 0.00 0.00 38.11 3.53
6746 7267 9.239551 GACATATTAACATTAGGGGGTATTTCC 57.760 37.037 0.00 0.00 0.00 3.13
6831 7362 6.882768 TGGCAATCCTAATTGGGTATTTTT 57.117 33.333 7.83 0.00 42.18 1.94
6836 7367 4.805140 TGATGGCAATCCTAATTGGGTA 57.195 40.909 7.83 0.00 42.18 3.69
6846 7377 2.624838 ACAAATCCGATGATGGCAATCC 59.375 45.455 0.00 0.00 31.15 3.01
6853 7384 6.851609 TCCAAAGTTAACAAATCCGATGATG 58.148 36.000 8.61 0.00 0.00 3.07
6862 7393 8.531146 CCATCCAGTTATCCAAAGTTAACAAAT 58.469 33.333 8.61 0.00 32.70 2.32
6884 7415 0.165944 GCAACGTGCAGTGTACCATC 59.834 55.000 5.73 0.00 44.26 3.51
6895 7426 3.184178 ACAAAATTAATGCAGCAACGTGC 59.816 39.130 0.00 0.00 45.46 5.34
6896 7427 4.443725 TGACAAAATTAATGCAGCAACGTG 59.556 37.500 0.00 0.00 0.00 4.49
6897 7428 4.615949 TGACAAAATTAATGCAGCAACGT 58.384 34.783 0.00 0.00 0.00 3.99
6898 7429 5.573296 TTGACAAAATTAATGCAGCAACG 57.427 34.783 0.00 0.00 0.00 4.10
6953 7484 9.851686 ACATCCATATGTATGTGTGTATTTCTT 57.148 29.630 12.66 0.00 44.66 2.52
6969 7500 7.080099 GCAAACAAGCAGTATACATCCATATG 58.920 38.462 5.50 0.00 39.17 1.78
6970 7501 6.772233 TGCAAACAAGCAGTATACATCCATAT 59.228 34.615 5.50 0.00 40.11 1.78
6971 7502 6.118852 TGCAAACAAGCAGTATACATCCATA 58.881 36.000 5.50 0.00 40.11 2.74
6972 7503 4.949238 TGCAAACAAGCAGTATACATCCAT 59.051 37.500 5.50 0.00 40.11 3.41
6973 7504 4.331108 TGCAAACAAGCAGTATACATCCA 58.669 39.130 5.50 0.00 40.11 3.41
6974 7505 4.963276 TGCAAACAAGCAGTATACATCC 57.037 40.909 5.50 0.00 40.11 3.51
6984 7515 3.491276 CCATGAAACTCTGCAAACAAGCA 60.491 43.478 0.00 0.00 43.35 3.91
6985 7516 3.054878 CCATGAAACTCTGCAAACAAGC 58.945 45.455 0.00 0.00 0.00 4.01
6986 7517 3.054878 GCCATGAAACTCTGCAAACAAG 58.945 45.455 0.00 0.00 0.00 3.16
6987 7518 2.543445 CGCCATGAAACTCTGCAAACAA 60.543 45.455 0.00 0.00 0.00 2.83
6988 7519 1.001487 CGCCATGAAACTCTGCAAACA 60.001 47.619 0.00 0.00 0.00 2.83
6989 7520 1.266718 TCGCCATGAAACTCTGCAAAC 59.733 47.619 0.00 0.00 0.00 2.93
6990 7521 1.603456 TCGCCATGAAACTCTGCAAA 58.397 45.000 0.00 0.00 0.00 3.68
6991 7522 1.603456 TTCGCCATGAAACTCTGCAA 58.397 45.000 0.00 0.00 32.37 4.08
6992 7523 1.603456 TTTCGCCATGAAACTCTGCA 58.397 45.000 0.00 0.00 41.59 4.41
7037 7568 9.686683 ACTAGCTTTTTCCATACATAATTCACT 57.313 29.630 0.00 0.00 0.00 3.41
7062 7593 5.125097 TGTGAGAGAAAGATCGGTAGGTAAC 59.875 44.000 0.00 0.00 0.00 2.50
7063 7594 5.258841 TGTGAGAGAAAGATCGGTAGGTAA 58.741 41.667 0.00 0.00 0.00 2.85
7064 7595 4.851843 TGTGAGAGAAAGATCGGTAGGTA 58.148 43.478 0.00 0.00 0.00 3.08
7065 7596 3.698289 TGTGAGAGAAAGATCGGTAGGT 58.302 45.455 0.00 0.00 0.00 3.08
7066 7597 4.261825 GGATGTGAGAGAAAGATCGGTAGG 60.262 50.000 0.00 0.00 0.00 3.18
7067 7598 4.339530 TGGATGTGAGAGAAAGATCGGTAG 59.660 45.833 0.00 0.00 0.00 3.18
7068 7599 4.278310 TGGATGTGAGAGAAAGATCGGTA 58.722 43.478 0.00 0.00 0.00 4.02
7069 7600 3.099905 TGGATGTGAGAGAAAGATCGGT 58.900 45.455 0.00 0.00 0.00 4.69
7070 7601 3.808466 TGGATGTGAGAGAAAGATCGG 57.192 47.619 0.00 0.00 0.00 4.18
7071 7602 4.744137 GTGATGGATGTGAGAGAAAGATCG 59.256 45.833 0.00 0.00 0.00 3.69
7072 7603 4.744137 CGTGATGGATGTGAGAGAAAGATC 59.256 45.833 0.00 0.00 0.00 2.75
7073 7604 4.161189 ACGTGATGGATGTGAGAGAAAGAT 59.839 41.667 0.00 0.00 0.00 2.40
7074 7605 3.511540 ACGTGATGGATGTGAGAGAAAGA 59.488 43.478 0.00 0.00 0.00 2.52
7075 7606 3.854666 ACGTGATGGATGTGAGAGAAAG 58.145 45.455 0.00 0.00 0.00 2.62
7076 7607 3.961480 ACGTGATGGATGTGAGAGAAA 57.039 42.857 0.00 0.00 0.00 2.52
7077 7608 3.368427 GGAACGTGATGGATGTGAGAGAA 60.368 47.826 0.00 0.00 0.00 2.87
7078 7609 2.166459 GGAACGTGATGGATGTGAGAGA 59.834 50.000 0.00 0.00 0.00 3.10
7079 7610 2.094026 TGGAACGTGATGGATGTGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
7080 7611 1.899142 TGGAACGTGATGGATGTGAGA 59.101 47.619 0.00 0.00 0.00 3.27
7081 7612 2.002586 GTGGAACGTGATGGATGTGAG 58.997 52.381 0.00 0.00 0.00 3.51
7082 7613 2.093306 GTGGAACGTGATGGATGTGA 57.907 50.000 0.00 0.00 0.00 3.58
7095 7626 0.814010 AGGTGTGTCAAGCGTGGAAC 60.814 55.000 0.00 0.00 0.00 3.62
7096 7627 0.531974 GAGGTGTGTCAAGCGTGGAA 60.532 55.000 0.00 0.00 0.00 3.53
7097 7628 1.069090 GAGGTGTGTCAAGCGTGGA 59.931 57.895 0.00 0.00 0.00 4.02
7098 7629 0.532862 AAGAGGTGTGTCAAGCGTGG 60.533 55.000 0.00 0.00 0.00 4.94
7099 7630 1.792949 GTAAGAGGTGTGTCAAGCGTG 59.207 52.381 0.00 0.00 0.00 5.34
7100 7631 1.411246 TGTAAGAGGTGTGTCAAGCGT 59.589 47.619 0.00 0.00 0.00 5.07
7101 7632 1.792949 GTGTAAGAGGTGTGTCAAGCG 59.207 52.381 0.00 0.00 0.00 4.68
7102 7633 3.113260 AGTGTAAGAGGTGTGTCAAGC 57.887 47.619 0.00 0.00 0.00 4.01
7103 7634 4.508124 GTCAAGTGTAAGAGGTGTGTCAAG 59.492 45.833 0.00 0.00 0.00 3.02
7104 7635 4.439057 GTCAAGTGTAAGAGGTGTGTCAA 58.561 43.478 0.00 0.00 0.00 3.18
7105 7636 3.490249 CGTCAAGTGTAAGAGGTGTGTCA 60.490 47.826 0.00 0.00 0.00 3.58
7106 7637 3.050619 CGTCAAGTGTAAGAGGTGTGTC 58.949 50.000 0.00 0.00 0.00 3.67
7107 7638 2.802057 GCGTCAAGTGTAAGAGGTGTGT 60.802 50.000 0.00 0.00 0.00 3.72
7108 7639 1.792949 GCGTCAAGTGTAAGAGGTGTG 59.207 52.381 0.00 0.00 0.00 3.82
7109 7640 1.411246 TGCGTCAAGTGTAAGAGGTGT 59.589 47.619 0.00 0.00 0.00 4.16
7110 7641 1.792949 GTGCGTCAAGTGTAAGAGGTG 59.207 52.381 0.00 0.00 0.00 4.00
7111 7642 1.270147 GGTGCGTCAAGTGTAAGAGGT 60.270 52.381 0.00 0.00 0.00 3.85
7112 7643 1.000955 AGGTGCGTCAAGTGTAAGAGG 59.999 52.381 0.00 0.00 0.00 3.69
7113 7644 2.029828 AGAGGTGCGTCAAGTGTAAGAG 60.030 50.000 0.00 0.00 0.00 2.85
7114 7645 1.961394 AGAGGTGCGTCAAGTGTAAGA 59.039 47.619 0.00 0.00 0.00 2.10
7115 7646 2.440539 AGAGGTGCGTCAAGTGTAAG 57.559 50.000 0.00 0.00 0.00 2.34
7116 7647 2.101750 TCAAGAGGTGCGTCAAGTGTAA 59.898 45.455 0.00 0.00 0.00 2.41
7117 7648 1.684450 TCAAGAGGTGCGTCAAGTGTA 59.316 47.619 0.00 0.00 0.00 2.90
7118 7649 0.464036 TCAAGAGGTGCGTCAAGTGT 59.536 50.000 0.00 0.00 0.00 3.55
7119 7650 1.462283 CATCAAGAGGTGCGTCAAGTG 59.538 52.381 0.00 0.00 0.00 3.16
7120 7651 1.609061 CCATCAAGAGGTGCGTCAAGT 60.609 52.381 0.00 0.00 0.00 3.16
7121 7652 1.081892 CCATCAAGAGGTGCGTCAAG 58.918 55.000 0.00 0.00 0.00 3.02
7122 7653 0.684535 TCCATCAAGAGGTGCGTCAA 59.315 50.000 0.00 0.00 0.00 3.18
7123 7654 0.037326 GTCCATCAAGAGGTGCGTCA 60.037 55.000 0.00 0.00 0.00 4.35
7124 7655 0.741221 GGTCCATCAAGAGGTGCGTC 60.741 60.000 0.00 0.00 0.00 5.19
7125 7656 1.296715 GGTCCATCAAGAGGTGCGT 59.703 57.895 0.00 0.00 0.00 5.24
7126 7657 1.811266 CGGTCCATCAAGAGGTGCG 60.811 63.158 0.00 0.00 0.00 5.34
7127 7658 0.741221 GTCGGTCCATCAAGAGGTGC 60.741 60.000 0.00 0.00 0.00 5.01
7128 7659 0.608130 TGTCGGTCCATCAAGAGGTG 59.392 55.000 0.00 0.00 0.00 4.00
7129 7660 0.608640 GTGTCGGTCCATCAAGAGGT 59.391 55.000 0.00 0.00 0.00 3.85
7130 7661 0.608130 TGTGTCGGTCCATCAAGAGG 59.392 55.000 0.00 0.00 0.00 3.69
7131 7662 2.069273 GTTGTGTCGGTCCATCAAGAG 58.931 52.381 0.00 0.00 0.00 2.85
7132 7663 1.604438 CGTTGTGTCGGTCCATCAAGA 60.604 52.381 0.00 0.00 0.00 3.02
7133 7664 0.790207 CGTTGTGTCGGTCCATCAAG 59.210 55.000 0.00 0.00 0.00 3.02
7134 7665 1.225376 GCGTTGTGTCGGTCCATCAA 61.225 55.000 0.00 0.00 0.00 2.57
7135 7666 1.666553 GCGTTGTGTCGGTCCATCA 60.667 57.895 0.00 0.00 0.00 3.07
7136 7667 0.949105 AAGCGTTGTGTCGGTCCATC 60.949 55.000 0.00 0.00 40.62 3.51
7137 7668 0.949105 GAAGCGTTGTGTCGGTCCAT 60.949 55.000 0.00 0.00 40.62 3.41
7138 7669 1.593209 GAAGCGTTGTGTCGGTCCA 60.593 57.895 0.00 0.00 40.62 4.02
7139 7670 1.282930 GAGAAGCGTTGTGTCGGTCC 61.283 60.000 0.00 0.00 40.62 4.46
7140 7671 0.318784 AGAGAAGCGTTGTGTCGGTC 60.319 55.000 0.00 0.00 40.62 4.79
7141 7672 0.104304 AAGAGAAGCGTTGTGTCGGT 59.896 50.000 0.00 0.00 43.29 4.69
7142 7673 0.784778 GAAGAGAAGCGTTGTGTCGG 59.215 55.000 0.00 0.00 0.00 4.79
7143 7674 1.487482 TGAAGAGAAGCGTTGTGTCG 58.513 50.000 0.00 0.00 0.00 4.35
7144 7675 3.321497 AGATGAAGAGAAGCGTTGTGTC 58.679 45.455 0.00 0.00 0.00 3.67
7145 7676 3.393089 AGATGAAGAGAAGCGTTGTGT 57.607 42.857 0.00 0.00 0.00 3.72
7146 7677 3.742882 TCAAGATGAAGAGAAGCGTTGTG 59.257 43.478 0.00 0.00 0.00 3.33
7147 7678 3.995199 TCAAGATGAAGAGAAGCGTTGT 58.005 40.909 0.00 0.00 0.00 3.32
7148 7679 4.201792 CCATCAAGATGAAGAGAAGCGTTG 60.202 45.833 11.48 0.00 41.20 4.10
7149 7680 3.937706 CCATCAAGATGAAGAGAAGCGTT 59.062 43.478 11.48 0.00 41.20 4.84
7150 7681 3.529533 CCATCAAGATGAAGAGAAGCGT 58.470 45.455 11.48 0.00 41.20 5.07
7151 7682 2.871022 CCCATCAAGATGAAGAGAAGCG 59.129 50.000 11.48 0.00 41.20 4.68
7152 7683 2.617774 GCCCATCAAGATGAAGAGAAGC 59.382 50.000 11.48 0.17 41.20 3.86
7153 7684 3.882444 TGCCCATCAAGATGAAGAGAAG 58.118 45.455 11.48 0.00 41.20 2.85
7154 7685 4.305539 TTGCCCATCAAGATGAAGAGAA 57.694 40.909 11.48 0.00 41.20 2.87
7165 7696 2.282391 AGTGCGCTTGCCCATCAA 60.282 55.556 9.73 0.00 38.03 2.57
7166 7697 3.057548 CAGTGCGCTTGCCCATCA 61.058 61.111 9.73 0.00 38.03 3.07
7167 7698 4.487412 GCAGTGCGCTTGCCCATC 62.487 66.667 21.69 0.11 38.03 3.51
7176 7707 1.611043 GATGAAGAAAAGCAGTGCGC 58.389 50.000 10.00 0.00 42.91 6.09
7177 7708 1.135575 GGGATGAAGAAAAGCAGTGCG 60.136 52.381 10.00 0.00 0.00 5.34
7178 7709 2.165998 AGGGATGAAGAAAAGCAGTGC 58.834 47.619 7.13 7.13 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.