Multiple sequence alignment - TraesCS6B01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G223000 chr6B 100.000 2339 0 0 1 2339 330983878 330981540 0.000000e+00 4320.0
1 TraesCS6B01G223000 chr6B 84.637 358 52 3 2 359 154689361 154689007 1.030000e-93 353.0
2 TraesCS6B01G223000 chr6B 82.105 95 13 4 1901 1992 172014418 172014511 6.930000e-11 78.7
3 TraesCS6B01G223000 chr6D 91.522 979 81 2 1362 2339 219760956 219759979 0.000000e+00 1347.0
4 TraesCS6B01G223000 chr6D 85.015 1001 136 10 258 1254 55435567 55434577 0.000000e+00 1005.0
5 TraesCS6B01G223000 chr6D 78.912 1323 263 16 25 1341 48683446 48682134 0.000000e+00 883.0
6 TraesCS6B01G223000 chr6A 90.788 977 85 5 1362 2336 282153612 282154585 0.000000e+00 1301.0
7 TraesCS6B01G223000 chr6A 91.071 56 5 0 1900 1955 5355396 5355451 2.490000e-10 76.8
8 TraesCS6B01G223000 chr4B 84.164 1345 206 6 1 1341 358896268 358894927 0.000000e+00 1297.0
9 TraesCS6B01G223000 chr3D 81.698 1366 238 11 1 1361 177015443 177014085 0.000000e+00 1127.0
10 TraesCS6B01G223000 chr3D 79.130 1356 253 25 1 1343 339845387 339844049 0.000000e+00 909.0
11 TraesCS6B01G223000 chr2D 84.740 1114 154 11 148 1253 226527400 226528505 0.000000e+00 1101.0
12 TraesCS6B01G223000 chr7D 80.163 1346 253 12 1 1341 472803812 472802476 0.000000e+00 994.0
13 TraesCS6B01G223000 chr7D 78.624 1366 278 12 1 1361 497005875 497007231 0.000000e+00 893.0
14 TraesCS6B01G223000 chr4D 78.832 1370 270 19 1 1361 126638012 126639370 0.000000e+00 905.0
15 TraesCS6B01G223000 chrUn 86.486 111 15 0 1231 1341 186247112 186247222 3.160000e-24 122.0
16 TraesCS6B01G223000 chrUn 88.889 90 10 0 1231 1320 85551477 85551388 6.830000e-21 111.0
17 TraesCS6B01G223000 chr7A 81.250 96 16 2 1899 1992 631881075 631880980 2.490000e-10 76.8
18 TraesCS6B01G223000 chr5B 86.000 50 7 0 1899 1948 681616867 681616818 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G223000 chr6B 330981540 330983878 2338 True 4320 4320 100.000 1 2339 1 chr6B.!!$R2 2338
1 TraesCS6B01G223000 chr6D 219759979 219760956 977 True 1347 1347 91.522 1362 2339 1 chr6D.!!$R3 977
2 TraesCS6B01G223000 chr6D 55434577 55435567 990 True 1005 1005 85.015 258 1254 1 chr6D.!!$R2 996
3 TraesCS6B01G223000 chr6D 48682134 48683446 1312 True 883 883 78.912 25 1341 1 chr6D.!!$R1 1316
4 TraesCS6B01G223000 chr6A 282153612 282154585 973 False 1301 1301 90.788 1362 2336 1 chr6A.!!$F2 974
5 TraesCS6B01G223000 chr4B 358894927 358896268 1341 True 1297 1297 84.164 1 1341 1 chr4B.!!$R1 1340
6 TraesCS6B01G223000 chr3D 177014085 177015443 1358 True 1127 1127 81.698 1 1361 1 chr3D.!!$R1 1360
7 TraesCS6B01G223000 chr3D 339844049 339845387 1338 True 909 909 79.130 1 1343 1 chr3D.!!$R2 1342
8 TraesCS6B01G223000 chr2D 226527400 226528505 1105 False 1101 1101 84.740 148 1253 1 chr2D.!!$F1 1105
9 TraesCS6B01G223000 chr7D 472802476 472803812 1336 True 994 994 80.163 1 1341 1 chr7D.!!$R1 1340
10 TraesCS6B01G223000 chr7D 497005875 497007231 1356 False 893 893 78.624 1 1361 1 chr7D.!!$F1 1360
11 TraesCS6B01G223000 chr4D 126638012 126639370 1358 False 905 905 78.832 1 1361 1 chr4D.!!$F1 1360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 459 0.402504 TCCATGCCGGGTAACACTTT 59.597 50.0 2.18 0.0 39.74 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 1993 0.328258 ACTGTGGTTGGATGGGTAGC 59.672 55.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 9.313118 GGTCAAAATATTAACATTTGGGATGAC 57.687 33.333 11.01 11.01 34.32 3.06
34 36 8.744652 TCAAAATATTAACATTTGGGATGACGT 58.255 29.630 0.00 0.00 35.34 4.34
44 46 1.749033 GGATGACGTCTGGATCCCC 59.251 63.158 17.92 3.71 31.01 4.81
105 108 3.244630 ACATTTGTTAGCGAAGGTGGGTA 60.245 43.478 0.00 0.00 40.22 3.69
131 134 7.989826 ACCTGATTGATCTTGTTACAAATAGC 58.010 34.615 0.00 0.00 0.00 2.97
133 136 9.330063 CCTGATTGATCTTGTTACAAATAGCTA 57.670 33.333 0.00 0.00 0.00 3.32
206 217 5.514274 TTCTTTCAATTCCACTTCCACAC 57.486 39.130 0.00 0.00 0.00 3.82
226 237 5.237996 CACACCATGATATGCCAGACTTTAG 59.762 44.000 0.00 0.00 0.00 1.85
227 238 5.130975 ACACCATGATATGCCAGACTTTAGA 59.869 40.000 0.00 0.00 0.00 2.10
234 245 1.003580 TGCCAGACTTTAGAGCTTGGG 59.996 52.381 0.00 0.00 32.89 4.12
334 345 2.136026 GACATTCTAATGGGAGGGGGT 58.864 52.381 7.56 0.00 40.70 4.95
422 433 6.986904 TTTTATATGGTGTACGTTGCATGA 57.013 33.333 0.00 0.00 0.00 3.07
448 459 0.402504 TCCATGCCGGGTAACACTTT 59.597 50.000 2.18 0.00 39.74 2.66
462 473 8.889717 CGGGTAACACTTTCAAATAGACATATT 58.110 33.333 0.00 0.00 39.74 1.28
508 519 3.034635 TGTTCAGAGGGCCTAGAAGATC 58.965 50.000 18.24 9.69 0.00 2.75
520 531 4.943705 GCCTAGAAGATCCAAAACACATGA 59.056 41.667 0.00 0.00 0.00 3.07
558 570 1.072331 GCCAGAGAGGTGTGGAAAAGA 59.928 52.381 0.00 0.00 39.64 2.52
612 624 4.019051 TGTGAGGTTGATCATGTTGGAGAT 60.019 41.667 0.00 0.00 0.00 2.75
712 724 3.444703 CTGTCTCAGCATGGTACCTAC 57.555 52.381 14.36 2.23 36.16 3.18
747 760 4.269603 CAGAAGATGGTGCATAAGAAGACG 59.730 45.833 0.00 0.00 0.00 4.18
755 768 4.979197 GGTGCATAAGAAGACGTCATAGAG 59.021 45.833 19.50 2.33 0.00 2.43
771 784 4.280425 TCATAGAGTGCACATCAGATCTCC 59.720 45.833 21.04 0.00 0.00 3.71
784 797 4.831314 TCAGATCTCCATGGGGATTCTTA 58.169 43.478 28.11 14.48 43.91 2.10
800 813 9.847224 GGGGATTCTTACTCTTACATCAAATTA 57.153 33.333 0.00 0.00 0.00 1.40
870 885 3.010138 CCTGTCCTTCCAAGGGATTTGTA 59.990 47.826 5.49 0.00 46.47 2.41
871 886 4.265073 CTGTCCTTCCAAGGGATTTGTAG 58.735 47.826 5.49 0.00 46.47 2.74
893 908 7.868922 TGTAGAACTTAATGTTGACGCTTCTTA 59.131 33.333 0.00 0.00 39.30 2.10
911 926 1.471119 TATGACCACGACCTCCTGAC 58.529 55.000 0.00 0.00 0.00 3.51
1049 1065 0.687354 CTAACACTGGTGCAGAGGGT 59.313 55.000 0.17 0.00 35.18 4.34
1057 1073 3.731728 TGCAGAGGGTGGGATGCC 61.732 66.667 0.00 0.00 37.89 4.40
1122 1138 3.095347 GCAGGATGGAGGACGGTCC 62.095 68.421 19.61 19.61 35.86 4.46
1151 1167 1.466855 GTAGCGGCAATTTTCGATGC 58.533 50.000 1.45 0.00 41.82 3.91
1163 1180 6.301108 CAATTTTCGATGCTTGTTTCCATTG 58.699 36.000 0.00 0.00 0.00 2.82
1173 1190 4.431809 CTTGTTTCCATTGCACTTGTGAA 58.568 39.130 4.79 0.00 0.00 3.18
1182 1199 5.290158 CCATTGCACTTGTGAATTCATTAGC 59.710 40.000 12.12 11.89 0.00 3.09
1185 1202 4.168760 GCACTTGTGAATTCATTAGCACC 58.831 43.478 12.12 0.00 0.00 5.01
1329 1346 6.148150 TCACAAACGATGTACTGGTTATTTCC 59.852 38.462 0.00 0.00 41.46 3.13
1343 1360 8.470002 ACTGGTTATTTCCAATGAATAAAGCTC 58.530 33.333 0.00 0.00 37.01 4.09
1344 1361 7.781056 TGGTTATTTCCAATGAATAAAGCTCC 58.219 34.615 0.00 0.00 32.50 4.70
1345 1362 7.619302 TGGTTATTTCCAATGAATAAAGCTCCT 59.381 33.333 0.00 0.00 32.50 3.69
1346 1363 9.131791 GGTTATTTCCAATGAATAAAGCTCCTA 57.868 33.333 0.00 0.00 32.50 2.94
1351 1368 9.920946 TTTCCAATGAATAAAGCTCCTATTAGT 57.079 29.630 0.00 0.00 0.00 2.24
1352 1369 9.920946 TTCCAATGAATAAAGCTCCTATTAGTT 57.079 29.630 0.00 0.00 0.00 2.24
1353 1370 9.920946 TCCAATGAATAAAGCTCCTATTAGTTT 57.079 29.630 0.00 0.00 0.00 2.66
1486 1503 7.770433 AGTATTGCTATTGTTCTATGTCTTGCA 59.230 33.333 0.00 0.00 0.00 4.08
1564 1581 6.931281 CAGGTGTGATGGACCTTAATATACTG 59.069 42.308 0.00 0.00 41.31 2.74
1571 1588 8.933653 TGATGGACCTTAATATACTGTGATCAA 58.066 33.333 0.00 0.00 0.00 2.57
1654 1671 4.342862 TTCTGCCTGGCTCTATACAATC 57.657 45.455 21.03 0.00 0.00 2.67
1678 1695 1.970092 CCACCGGGTCAACTAAAACA 58.030 50.000 6.32 0.00 0.00 2.83
1700 1717 4.467084 CGTATGGGGTGCGGCTGT 62.467 66.667 0.00 0.00 31.85 4.40
1701 1718 2.904905 GTATGGGGTGCGGCTGTA 59.095 61.111 0.00 0.00 0.00 2.74
1706 1723 3.204827 GGGTGCGGCTGTATGCAG 61.205 66.667 6.42 6.42 42.68 4.41
1735 1752 8.358895 CCTATCTAGTGATCATAATGCATCGAT 58.641 37.037 0.00 2.54 34.32 3.59
1752 1769 1.146957 GATGAGCTCGCTCTGCTGTG 61.147 60.000 18.63 0.00 43.12 3.66
1806 1823 1.540267 GCTGTGTAGAGACTGAACCGA 59.460 52.381 0.00 0.00 0.00 4.69
1818 1835 4.462834 AGACTGAACCGACACATCATCTTA 59.537 41.667 0.00 0.00 0.00 2.10
1825 1842 5.118990 ACCGACACATCATCTTAAGATTGG 58.881 41.667 15.49 9.58 31.21 3.16
1826 1843 5.104941 ACCGACACATCATCTTAAGATTGGA 60.105 40.000 15.49 11.11 31.21 3.53
1847 1864 1.716581 GAAGTCGTCACAGAGCTTTCG 59.283 52.381 0.00 0.00 0.00 3.46
1878 1896 6.053005 ACGAAACATTTCCTCTCACTAAACA 58.947 36.000 0.00 0.00 33.68 2.83
1884 1902 8.498054 ACATTTCCTCTCACTAAACACATATG 57.502 34.615 0.00 0.00 0.00 1.78
1932 1950 3.928727 AAATGTGAGCACCAATGTCAG 57.071 42.857 0.00 0.00 0.00 3.51
1949 1967 6.681729 ATGTCAGGTTTAGGACTTGAACTA 57.318 37.500 0.00 0.00 44.74 2.24
1956 1974 5.280317 GGTTTAGGACTTGAACTATGGTGGA 60.280 44.000 0.00 0.00 0.00 4.02
1993 2012 0.328258 GCTACCCATCCAACCACAGT 59.672 55.000 0.00 0.00 0.00 3.55
1998 2017 2.315176 CCCATCCAACCACAGTTTGAA 58.685 47.619 0.00 0.00 31.96 2.69
2061 2080 7.891183 TGCCTATCCAACCTAAAAATAGAACAA 59.109 33.333 0.00 0.00 0.00 2.83
2083 2102 6.070481 ACAAACCTCACACAAAATAAAACCCT 60.070 34.615 0.00 0.00 0.00 4.34
2086 2105 4.262420 CCTCACACAAAATAAAACCCTGGG 60.262 45.833 12.28 12.28 0.00 4.45
2106 2125 4.897076 TGGGTACATACTATCCGTCACAAT 59.103 41.667 0.00 0.00 0.00 2.71
2143 2162 3.071479 GCCGAGACAATTGAACAACCTA 58.929 45.455 13.59 0.00 0.00 3.08
2149 2168 4.104102 AGACAATTGAACAACCTAGGACCA 59.896 41.667 17.98 2.58 0.00 4.02
2150 2169 4.398319 ACAATTGAACAACCTAGGACCAG 58.602 43.478 17.98 4.38 0.00 4.00
2172 2191 6.350361 CCAGGTGAAAAAGAATGCACATCATA 60.350 38.462 0.00 0.00 34.33 2.15
2205 2224 0.608856 ATGCATGTTGTGAAGCCGGA 60.609 50.000 5.05 0.00 0.00 5.14
2212 2231 2.675844 TGTTGTGAAGCCGGAATAATCG 59.324 45.455 5.05 0.00 0.00 3.34
2218 2237 2.240493 AGCCGGAATAATCGACCAAG 57.760 50.000 5.05 0.00 0.00 3.61
2300 2319 9.209175 GTTTAAGATGTATCACTATGCCTTAGG 57.791 37.037 0.00 0.00 31.68 2.69
2309 2328 2.969950 ACTATGCCTTAGGGTATTCGCA 59.030 45.455 0.00 0.00 38.79 5.10
2336 2355 2.499289 TCTTCCTCATGTTGCTCTCTCC 59.501 50.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 0.544357 AGTTGGGGATCCAGACGTCA 60.544 55.000 19.50 0.00 45.04 4.35
32 34 0.391661 CACAGTTGGGGATCCAGACG 60.392 60.000 15.23 7.64 45.04 4.18
34 36 1.685224 GCACAGTTGGGGATCCAGA 59.315 57.895 15.23 0.00 45.04 3.86
44 46 2.957491 TTTTCCTTGTGGCACAGTTG 57.043 45.000 20.97 14.22 41.80 3.16
105 108 8.462016 GCTATTTGTAACAAGATCAATCAGGTT 58.538 33.333 0.00 5.16 32.60 3.50
118 121 9.547753 GATCTTCATCCTAGCTATTTGTAACAA 57.452 33.333 0.00 0.00 0.00 2.83
130 133 7.225784 TGTCTAATGAGATCTTCATCCTAGC 57.774 40.000 0.00 1.12 45.82 3.42
131 134 9.474920 GTTTGTCTAATGAGATCTTCATCCTAG 57.525 37.037 0.00 2.89 45.82 3.02
133 136 8.088463 AGTTTGTCTAATGAGATCTTCATCCT 57.912 34.615 0.00 0.00 45.82 3.24
206 217 4.694509 GCTCTAAAGTCTGGCATATCATGG 59.305 45.833 0.00 0.00 0.00 3.66
249 260 0.246635 ACCGAACCGAGAACATCCTG 59.753 55.000 0.00 0.00 0.00 3.86
250 261 0.531200 GACCGAACCGAGAACATCCT 59.469 55.000 0.00 0.00 0.00 3.24
252 263 1.630148 CAGACCGAACCGAGAACATC 58.370 55.000 0.00 0.00 0.00 3.06
329 340 1.897133 GGTTAATTGTGGTTCACCCCC 59.103 52.381 0.00 0.00 32.73 5.40
334 345 5.366768 TCCAAATTGGGTTAATTGTGGTTCA 59.633 36.000 12.67 0.00 38.93 3.18
343 354 9.367160 CCATATCTTACTCCAAATTGGGTTAAT 57.633 33.333 12.67 6.34 38.32 1.40
422 433 1.502690 TACCCGGCATGGAAGTGTAT 58.497 50.000 0.00 0.00 42.00 2.29
462 473 7.921041 AGTAGGACAAATGGATGAGATCTTA 57.079 36.000 0.00 0.00 0.00 2.10
508 519 9.311916 TCTACAAAGAAAAATCATGTGTTTTGG 57.688 29.630 11.95 4.43 0.00 3.28
580 592 3.181440 TGATCAACCTCACAGGCTTTCTT 60.181 43.478 0.00 0.00 39.63 2.52
582 594 2.783135 TGATCAACCTCACAGGCTTTC 58.217 47.619 0.00 0.00 39.63 2.62
612 624 5.736813 AGTAGTAAATATTCCAACACCGCA 58.263 37.500 0.00 0.00 0.00 5.69
712 724 3.262420 CCATCTTCTGTCTTTACCACCG 58.738 50.000 0.00 0.00 0.00 4.94
747 760 5.199024 AGATCTGATGTGCACTCTATGAC 57.801 43.478 19.41 5.29 0.00 3.06
755 768 2.219458 CCATGGAGATCTGATGTGCAC 58.781 52.381 10.75 10.75 0.00 4.57
771 784 6.830912 TGATGTAAGAGTAAGAATCCCCATG 58.169 40.000 0.00 0.00 0.00 3.66
784 797 8.959548 TGCATTGACATAATTTGATGTAAGAGT 58.040 29.630 0.00 0.00 40.18 3.24
800 813 0.466189 GGGGGACGATGCATTGACAT 60.466 55.000 21.12 0.00 0.00 3.06
870 885 7.602644 TCATAAGAAGCGTCAACATTAAGTTCT 59.397 33.333 1.61 0.00 38.74 3.01
871 886 7.688578 GTCATAAGAAGCGTCAACATTAAGTTC 59.311 37.037 1.61 0.00 38.74 3.01
893 908 1.595993 CGTCAGGAGGTCGTGGTCAT 61.596 60.000 0.11 0.00 33.00 3.06
916 931 2.229784 CTCTCAAAACTGTCCCCATTGC 59.770 50.000 0.00 0.00 0.00 3.56
925 941 5.440610 ACCTTTGTCATCTCTCAAAACTGT 58.559 37.500 0.00 0.00 33.99 3.55
1128 1144 1.800681 GAAAATTGCCGCTACCGCT 59.199 52.632 0.00 0.00 0.00 5.52
1163 1180 4.168760 GGTGCTAATGAATTCACAAGTGC 58.831 43.478 11.07 11.26 0.00 4.40
1173 1190 5.065218 GTGTTCGAATCTGGTGCTAATGAAT 59.935 40.000 0.00 0.00 0.00 2.57
1182 1199 6.330278 TCTATTACAGTGTTCGAATCTGGTG 58.670 40.000 25.62 13.22 34.02 4.17
1185 1202 7.043722 GCTTCTCTATTACAGTGTTCGAATCTG 60.044 40.741 22.64 22.64 35.60 2.90
1241 1258 4.331168 CCGAAGTGGAAGAAAATCTAGCTG 59.669 45.833 0.00 0.00 42.00 4.24
1257 1274 2.744202 CTCCTCAAACCAATCCGAAGTG 59.256 50.000 0.00 0.00 0.00 3.16
1519 1536 5.163195 ACCTGATGATACATTTGGTAGGGAC 60.163 44.000 0.00 0.00 34.92 4.46
1521 1538 5.065914 CACCTGATGATACATTTGGTAGGG 58.934 45.833 0.00 0.00 34.92 3.53
1571 1588 9.821240 ATAGATAGTAGTCATTGGAAGTGATCT 57.179 33.333 0.00 0.00 0.00 2.75
1605 1622 9.448438 TGCAAAGAAAGCAGATAAGTAAATCTA 57.552 29.630 0.00 0.00 37.02 1.98
1654 1671 1.541310 TAGTTGACCCGGTGGCAGAG 61.541 60.000 0.00 0.00 33.59 3.35
1678 1695 1.078708 CCGCACCCCATACGTTCTT 60.079 57.895 0.00 0.00 0.00 2.52
1700 1717 9.533831 TTATGATCACTAGATAGGAACTGCATA 57.466 33.333 0.00 0.00 41.52 3.14
1701 1718 6.931790 ATGATCACTAGATAGGAACTGCAT 57.068 37.500 0.00 0.00 41.52 3.96
1706 1723 9.311916 GATGCATTATGATCACTAGATAGGAAC 57.688 37.037 0.00 0.00 33.72 3.62
1735 1752 2.092319 AACACAGCAGAGCGAGCTCA 62.092 55.000 24.70 0.00 44.99 4.26
1769 1786 1.472878 CAGCAGAGTACGTCTTGCCTA 59.527 52.381 0.00 0.00 30.64 3.93
1806 1823 7.628234 ACTTCTCCAATCTTAAGATGATGTGT 58.372 34.615 18.61 9.18 34.49 3.72
1818 1835 3.574396 TCTGTGACGACTTCTCCAATCTT 59.426 43.478 0.00 0.00 0.00 2.40
1825 1842 2.715737 AAGCTCTGTGACGACTTCTC 57.284 50.000 0.00 0.00 0.00 2.87
1826 1843 2.605823 CGAAAGCTCTGTGACGACTTCT 60.606 50.000 0.00 0.00 0.00 2.85
1847 1864 4.819700 GAGGAAATGTTTCGTCGACTAC 57.180 45.455 14.70 9.41 40.71 2.73
1907 1925 4.406456 ACATTGGTGCTCACATTTTCCTA 58.594 39.130 2.21 0.00 0.00 2.94
1921 1939 4.021102 AGTCCTAAACCTGACATTGGTG 57.979 45.455 0.00 0.00 37.93 4.17
1932 1950 4.941873 CCACCATAGTTCAAGTCCTAAACC 59.058 45.833 0.00 0.00 0.00 3.27
1956 1974 0.839946 GCAGGACAGTGGTATCCCAT 59.160 55.000 0.00 0.00 44.35 4.00
1974 1993 0.328258 ACTGTGGTTGGATGGGTAGC 59.672 55.000 0.00 0.00 0.00 3.58
1993 2012 4.541705 TGGTGGGAGAAATCACTTTCAAA 58.458 39.130 1.40 0.00 42.71 2.69
1998 2017 3.593442 TGTTGGTGGGAGAAATCACTT 57.407 42.857 0.00 0.00 34.57 3.16
2061 2080 5.163353 CCAGGGTTTTATTTTGTGTGAGGTT 60.163 40.000 0.00 0.00 0.00 3.50
2083 2102 3.900971 TGTGACGGATAGTATGTACCCA 58.099 45.455 0.00 0.00 0.00 4.51
2086 2105 6.988109 GTCATTGTGACGGATAGTATGTAC 57.012 41.667 0.00 0.00 37.67 2.90
2106 2125 0.447406 CGGCTTCGCATCATTTGTCA 59.553 50.000 0.00 0.00 0.00 3.58
2127 2146 4.394729 TGGTCCTAGGTTGTTCAATTGTC 58.605 43.478 9.08 1.16 0.00 3.18
2143 2162 2.893489 GCATTCTTTTTCACCTGGTCCT 59.107 45.455 0.00 0.00 0.00 3.85
2149 2168 5.733620 ATGATGTGCATTCTTTTTCACCT 57.266 34.783 0.00 0.00 31.73 4.00
2150 2169 6.389091 TGTATGATGTGCATTCTTTTTCACC 58.611 36.000 0.00 0.00 38.44 4.02
2196 2215 1.483004 TGGTCGATTATTCCGGCTTCA 59.517 47.619 0.00 0.00 0.00 3.02
2205 2224 0.818040 GCCCCGCTTGGTCGATTATT 60.818 55.000 0.00 0.00 0.00 1.40
2218 2237 2.710902 CCTTTTTAGCTGGCCCCGC 61.711 63.158 0.00 2.42 0.00 6.13
2226 2245 3.092301 GGCCTGATTGTCCTTTTTAGCT 58.908 45.455 0.00 0.00 0.00 3.32
2252 2271 1.741770 GCCACACTTTCGCTCCGAT 60.742 57.895 0.00 0.00 35.23 4.18
2300 2319 3.270877 AGGAAGAACATGTGCGAATACC 58.729 45.455 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.