Multiple sequence alignment - TraesCS6B01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G220700 chr6B 100.000 5053 0 0 1 5053 315279073 315274021 0.000000e+00 9332.0
1 TraesCS6B01G220700 chr6A 95.322 2672 69 22 1996 4630 273166037 273168689 0.000000e+00 4191.0
2 TraesCS6B01G220700 chr6A 98.115 1061 17 2 709 1769 273164829 273165886 0.000000e+00 1845.0
3 TraesCS6B01G220700 chr6A 98.462 520 7 1 188 707 273164248 273164766 0.000000e+00 915.0
4 TraesCS6B01G220700 chr6A 90.465 430 36 2 4629 5053 273170006 273170435 3.420000e-156 562.0
5 TraesCS6B01G220700 chr6A 98.065 155 3 0 1 155 273163855 273164009 2.320000e-68 270.0
6 TraesCS6B01G220700 chr6D 97.540 2439 34 7 1970 4383 216845860 216843423 0.000000e+00 4148.0
7 TraesCS6B01G220700 chr6D 96.369 1267 19 3 709 1975 216849068 216847829 0.000000e+00 2060.0
8 TraesCS6B01G220700 chr6D 98.879 535 6 0 178 712 216849662 216849128 0.000000e+00 955.0
9 TraesCS6B01G220700 chr6D 92.791 430 26 2 4629 5053 216842862 216842433 7.190000e-173 617.0
10 TraesCS6B01G220700 chr6D 89.720 428 37 4 4629 5051 462601142 462600717 1.600000e-149 540.0
11 TraesCS6B01G220700 chr2A 89.227 427 44 1 4629 5053 384966112 384966538 2.680000e-147 532.0
12 TraesCS6B01G220700 chr4D 89.252 428 39 6 4629 5053 395942387 395941964 3.460000e-146 529.0
13 TraesCS6B01G220700 chr5B 89.202 426 39 4 4629 5051 209198651 209199072 4.480000e-145 525.0
14 TraesCS6B01G220700 chr5B 88.679 53 5 1 4506 4558 538921596 538921647 4.220000e-06 63.9
15 TraesCS6B01G220700 chr5A 88.993 427 42 4 4629 5052 276968906 276969330 1.610000e-144 523.0
16 TraesCS6B01G220700 chr3D 88.915 424 45 1 4632 5053 400341185 400340762 5.800000e-144 521.0
17 TraesCS6B01G220700 chr5D 88.837 430 39 7 4629 5053 213134922 213134497 2.090000e-143 520.0
18 TraesCS6B01G220700 chr2D 86.364 88 10 2 543 629 86087074 86086988 1.500000e-15 95.3
19 TraesCS6B01G220700 chr7B 100.000 33 0 0 595 627 565057441 565057473 1.520000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G220700 chr6B 315274021 315279073 5052 True 9332.0 9332 100.00000 1 5053 1 chr6B.!!$R1 5052
1 TraesCS6B01G220700 chr6A 273163855 273170435 6580 False 1556.6 4191 96.08580 1 5053 5 chr6A.!!$F1 5052
2 TraesCS6B01G220700 chr6D 216842433 216849662 7229 True 1945.0 4148 96.39475 178 5053 4 chr6D.!!$R2 4875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.165944 CTTGTCGGAATCGTGTTGCC 59.834 55.000 0.00 0.0 37.69 4.52 F
889 1159 1.009335 GCGGACCGGTGAACAAAAC 60.009 57.895 14.63 0.0 0.00 2.43 F
1529 1799 1.202177 CGATGGCAAATTCGTCCCAAG 60.202 52.381 0.00 0.0 0.00 3.61 F
2943 5212 1.068741 GACTACCCTGCAATACTCCCG 59.931 57.143 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2147 0.323816 GAAAAGCAAGAGGGAGGGGG 60.324 60.0 0.00 0.0 0.00 5.40 R
1916 2186 0.662619 TGCGGCAAAGTCAACTGAAG 59.337 50.0 0.00 0.0 0.00 3.02 R
3401 5670 0.892755 ACAAATGTCATGCCCAGCAG 59.107 50.0 0.00 0.0 43.65 4.24 R
4802 8525 0.179248 GCTGCAACTTCGCGTACTTC 60.179 55.0 5.77 0.0 33.35 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.622163 CGAGAGTGTAGAACATACTCGGT 59.378 47.826 20.37 0.00 46.88 4.69
104 105 0.727398 GCTTTGATCTACACGTGCCC 59.273 55.000 17.22 0.80 0.00 5.36
155 156 0.865769 ACTTGTCGGAATCGTGTTGC 59.134 50.000 0.00 0.00 37.69 4.17
156 157 0.165944 CTTGTCGGAATCGTGTTGCC 59.834 55.000 0.00 0.00 37.69 4.52
157 158 1.231958 TTGTCGGAATCGTGTTGCCC 61.232 55.000 0.00 0.00 37.69 5.36
158 159 2.046700 TCGGAATCGTGTTGCCCC 60.047 61.111 0.00 0.00 37.69 5.80
159 160 3.131478 CGGAATCGTGTTGCCCCC 61.131 66.667 0.00 0.00 0.00 5.40
291 498 2.953640 TATGCGTTGTTGGTCGTTTC 57.046 45.000 0.00 0.00 0.00 2.78
700 907 9.471742 GCAGTTGTTTAACATAAAAGTTTGTTG 57.528 29.630 0.00 0.22 39.30 3.33
707 916 5.453567 ACATAAAAGTTTGTTGCCCTCTC 57.546 39.130 0.00 0.00 0.00 3.20
889 1159 1.009335 GCGGACCGGTGAACAAAAC 60.009 57.895 14.63 0.00 0.00 2.43
914 1184 2.808543 CTCTTCCAGTTGGTTACAGCAC 59.191 50.000 0.00 0.00 36.34 4.40
938 1208 5.005203 CGACATGTGAAATGAGCTCTTCTAC 59.995 44.000 16.19 11.76 0.00 2.59
1507 1777 8.677148 AAAGCTCTACTCAAGTAACAATCAAA 57.323 30.769 0.00 0.00 0.00 2.69
1529 1799 1.202177 CGATGGCAAATTCGTCCCAAG 60.202 52.381 0.00 0.00 0.00 3.61
1761 2031 8.258007 TGAAGCAACTATAGTTAGTTAGCATGT 58.742 33.333 17.62 6.62 44.94 3.21
1859 2129 9.893305 AAAATAAATGGCTTATAGCGATTGTAC 57.107 29.630 9.21 0.00 46.58 2.90
1916 2186 7.905493 GCTTTTCTACAAGACATACATAACAGC 59.095 37.037 0.00 0.00 0.00 4.40
1968 2238 9.968870 GGCCTCTTTAGTATAGCATGTATATAC 57.031 37.037 16.41 16.41 36.68 1.47
2273 4517 6.016610 TGGTAGCCACAACTTTTATTGTCTTC 60.017 38.462 0.00 0.00 40.89 2.87
2736 5005 3.007940 TGTTACAATACTCTGCTGCAGGT 59.992 43.478 27.79 24.19 31.51 4.00
2862 5131 2.032377 TCCGTCTTGTTTGCGAAATCAC 60.032 45.455 0.00 0.00 0.00 3.06
2875 5144 3.746492 GCGAAATCACTGTAGGTTTGACT 59.254 43.478 0.00 0.00 0.00 3.41
2943 5212 1.068741 GACTACCCTGCAATACTCCCG 59.931 57.143 0.00 0.00 0.00 5.14
3080 5349 4.097892 GGATTTTGGGTAATGTAGTGCAGG 59.902 45.833 0.00 0.00 0.00 4.85
3367 5636 2.888834 TTGAAGCTTTTGACTTGCCC 57.111 45.000 0.00 0.00 0.00 5.36
3401 5670 9.778741 TTGATACACTCAGGATAATAATGTTCC 57.221 33.333 0.00 0.00 34.68 3.62
3599 5868 4.677779 GCGGCAATTGATATGAACAGGTTT 60.678 41.667 10.34 0.00 0.00 3.27
3791 6061 7.112452 ACCTCAGTAAAAGTGAAAGCAAAAT 57.888 32.000 0.00 0.00 0.00 1.82
3866 6136 0.946528 TGCGTTGATGCAGATATGCC 59.053 50.000 10.32 0.00 40.62 4.40
3880 6150 5.314529 CAGATATGCCTTCCTCATGTGATT 58.685 41.667 0.00 0.00 0.00 2.57
3883 6153 4.730949 ATGCCTTCCTCATGTGATTTTG 57.269 40.909 0.00 0.00 0.00 2.44
3971 6241 1.275856 GCAATGCCAATGGTTTCCTCA 59.724 47.619 0.00 0.00 0.00 3.86
4026 6296 3.206150 CGATCAAAGTACATTCCCCTGG 58.794 50.000 0.00 0.00 0.00 4.45
4071 6341 8.568676 TCTATAGCTGGTGATGTTCTATAGAC 57.431 38.462 0.67 0.00 41.06 2.59
4082 6352 9.366216 GTGATGTTCTATAGACACACAATACAA 57.634 33.333 15.47 0.00 0.00 2.41
4344 6614 8.081633 TGTAACATTTGAAAAGCTAAGTGATGG 58.918 33.333 0.00 0.00 0.00 3.51
4362 6632 1.414919 TGGTAAGAGCAACTCCAACGT 59.585 47.619 0.00 0.00 0.00 3.99
4385 6655 1.190833 TCCAATGCGCCAACCCAAAT 61.191 50.000 4.18 0.00 0.00 2.32
4387 6657 1.375780 AATGCGCCAACCCAAATGC 60.376 52.632 4.18 0.00 0.00 3.56
4390 6660 2.338257 CGCCAACCCAAATGCGTT 59.662 55.556 0.00 0.00 41.95 4.84
4391 6661 2.021039 CGCCAACCCAAATGCGTTG 61.021 57.895 4.36 4.36 41.95 4.10
4392 6662 1.068921 GCCAACCCAAATGCGTTGT 59.931 52.632 9.39 0.00 38.12 3.32
4393 6663 0.943835 GCCAACCCAAATGCGTTGTC 60.944 55.000 9.39 0.00 38.12 3.18
4394 6664 0.673437 CCAACCCAAATGCGTTGTCT 59.327 50.000 9.39 0.00 38.12 3.41
4395 6665 1.602668 CCAACCCAAATGCGTTGTCTG 60.603 52.381 9.39 0.00 38.12 3.51
4396 6666 0.031994 AACCCAAATGCGTTGTCTGC 59.968 50.000 0.00 0.00 35.23 4.26
4397 6667 1.442520 CCCAAATGCGTTGTCTGCG 60.443 57.895 0.00 0.00 35.23 5.18
4404 6674 4.025401 CGTTGTCTGCGCCAACCC 62.025 66.667 18.34 4.77 39.16 4.11
4405 6675 2.904866 GTTGTCTGCGCCAACCCA 60.905 61.111 14.73 0.00 36.94 4.51
4406 6676 2.124109 TTGTCTGCGCCAACCCAA 60.124 55.556 4.18 0.00 0.00 4.12
4411 6681 3.822403 CTGCGCCAACCCAAACGTG 62.822 63.158 4.18 0.00 0.00 4.49
4417 6687 1.099689 CCAACCCAAACGTGTTGTCT 58.900 50.000 13.47 0.00 40.12 3.41
4426 6793 1.908065 ACGTGTTGTCTGCTTTTTGC 58.092 45.000 0.00 0.00 43.25 3.68
4427 6794 1.199624 CGTGTTGTCTGCTTTTTGCC 58.800 50.000 0.00 0.00 42.00 4.52
4439 6806 0.461961 TTTTTGCCTGTTTGGGTCGG 59.538 50.000 0.00 0.00 36.00 4.79
4440 6807 0.684805 TTTTGCCTGTTTGGGTCGGT 60.685 50.000 0.00 0.00 36.00 4.69
4445 6812 1.366366 CTGTTTGGGTCGGTCGAGT 59.634 57.895 0.00 0.00 0.00 4.18
4465 6832 5.233902 CGAGTGGATGAGATTGTCTGATTTC 59.766 44.000 0.00 0.00 0.00 2.17
4482 6858 6.882140 TCTGATTTCCTATTGTCCGCTTTTTA 59.118 34.615 0.00 0.00 0.00 1.52
4493 6869 4.141914 TGTCCGCTTTTTATTTGTTTGGGT 60.142 37.500 0.00 0.00 0.00 4.51
4495 6871 5.631929 GTCCGCTTTTTATTTGTTTGGGTAG 59.368 40.000 0.00 0.00 0.00 3.18
4503 6879 2.738587 TTGTTTGGGTAGCTCCAACA 57.261 45.000 6.38 6.02 45.48 3.33
4504 6880 2.969821 TGTTTGGGTAGCTCCAACAT 57.030 45.000 6.38 0.00 45.48 2.71
4533 6910 0.535335 ACGGATGCACGTATTGTCCT 59.465 50.000 0.00 0.00 46.58 3.85
4550 6927 4.594970 TGTCCTCTTTTTGTCTGTTTGGA 58.405 39.130 0.00 0.00 0.00 3.53
4608 7010 4.823419 CGGCCGCGTCACCCAATA 62.823 66.667 14.67 0.00 0.00 1.90
4688 8410 1.586123 GTTTGTTTCGTGCACGCAAAT 59.414 42.857 31.57 0.00 39.60 2.32
4695 8417 1.535028 TCGTGCACGCAAATGAAGAAT 59.465 42.857 33.63 0.00 39.60 2.40
4746 8468 8.375506 TGGATATTGCGAATATAAGAGGAAAGT 58.624 33.333 0.00 0.00 34.31 2.66
4819 8542 0.595567 ACGAAGTACGCGAAGTTGCA 60.596 50.000 15.93 0.00 46.94 4.08
4826 8549 0.389817 ACGCGAAGTTGCAGCTATGA 60.390 50.000 15.93 0.00 34.15 2.15
4862 8585 8.631480 ATCTAAACAAAACCCGAAGTCTAAAT 57.369 30.769 0.00 0.00 0.00 1.40
4868 8591 1.349688 ACCCGAAGTCTAAATGGTGCA 59.650 47.619 0.00 0.00 0.00 4.57
4952 8675 2.528041 AAACACCTCCTGAGTCGTTC 57.472 50.000 0.00 0.00 0.00 3.95
4953 8676 0.680061 AACACCTCCTGAGTCGTTCC 59.320 55.000 0.00 0.00 0.00 3.62
5030 8757 2.096248 TGGCCTAAAAATAAGGTGGCG 58.904 47.619 3.32 0.00 41.08 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.494724 TGTTCTACACTCTCGTGGTAGTAT 58.505 41.667 0.00 0.00 45.50 2.12
104 105 3.627577 ACAATATAGCAAAGGAAGGCACG 59.372 43.478 0.00 0.00 0.00 5.34
161 162 1.482621 CGAAGATCCGACCACATGCG 61.483 60.000 0.00 0.00 0.00 4.73
162 163 1.154205 CCGAAGATCCGACCACATGC 61.154 60.000 0.00 0.00 0.00 4.06
163 164 0.530650 CCCGAAGATCCGACCACATG 60.531 60.000 0.00 0.00 0.00 3.21
164 165 1.823295 CCCGAAGATCCGACCACAT 59.177 57.895 0.00 0.00 0.00 3.21
165 166 3.014085 GCCCGAAGATCCGACCACA 62.014 63.158 0.00 0.00 0.00 4.17
166 167 2.202892 GCCCGAAGATCCGACCAC 60.203 66.667 0.00 0.00 0.00 4.16
167 168 3.833645 CGCCCGAAGATCCGACCA 61.834 66.667 0.00 0.00 0.00 4.02
168 169 2.365095 AATCGCCCGAAGATCCGACC 62.365 60.000 0.00 0.00 32.07 4.79
169 170 0.940047 GAATCGCCCGAAGATCCGAC 60.940 60.000 0.00 0.00 32.07 4.79
170 171 1.107538 AGAATCGCCCGAAGATCCGA 61.108 55.000 0.00 0.00 0.00 4.55
171 172 0.941463 CAGAATCGCCCGAAGATCCG 60.941 60.000 0.00 0.00 0.00 4.18
172 173 0.389391 TCAGAATCGCCCGAAGATCC 59.611 55.000 0.00 0.00 0.00 3.36
173 174 2.447244 ATCAGAATCGCCCGAAGATC 57.553 50.000 0.00 0.00 0.00 2.75
174 175 2.918712 AATCAGAATCGCCCGAAGAT 57.081 45.000 0.00 0.00 0.00 2.40
175 176 2.691409 AAATCAGAATCGCCCGAAGA 57.309 45.000 0.00 0.00 0.00 2.87
176 177 6.147821 ACAATATAAATCAGAATCGCCCGAAG 59.852 38.462 0.00 0.00 0.00 3.79
265 472 4.213694 ACGACCAACAACGCATAAATTACA 59.786 37.500 0.00 0.00 0.00 2.41
291 498 0.465824 ACCCTGTAGATCTCGTCCCG 60.466 60.000 0.00 0.00 0.00 5.14
550 757 2.157834 ACGTCTTGCATTTGGTACGA 57.842 45.000 0.00 0.00 34.62 3.43
551 758 2.961522 AACGTCTTGCATTTGGTACG 57.038 45.000 0.00 0.00 36.48 3.67
707 916 2.271497 CCCTGAGAAGCTGGCCAG 59.729 66.667 29.34 29.34 34.47 4.85
786 1056 4.162888 ACAACTGGCATATGAGTCAGATGA 59.837 41.667 27.71 9.91 35.38 2.92
889 1159 4.261197 GCTGTAACCAACTGGAAGAGTTTG 60.261 45.833 1.86 0.00 42.70 2.93
914 1184 3.931468 AGAAGAGCTCATTTCACATGTCG 59.069 43.478 17.77 0.00 0.00 4.35
938 1208 1.242076 CTCCTCCAACAAGCCACTTG 58.758 55.000 5.80 5.80 45.85 3.16
1507 1777 1.376609 GGGACGAATTTGCCATCGCT 61.377 55.000 0.00 0.00 42.61 4.93
1529 1799 9.383519 TCCAAGTCTGAAAATACATAACTGATC 57.616 33.333 0.00 0.00 0.00 2.92
1877 2147 0.323816 GAAAAGCAAGAGGGAGGGGG 60.324 60.000 0.00 0.00 0.00 5.40
1878 2148 0.701147 AGAAAAGCAAGAGGGAGGGG 59.299 55.000 0.00 0.00 0.00 4.79
1879 2149 2.305927 TGTAGAAAAGCAAGAGGGAGGG 59.694 50.000 0.00 0.00 0.00 4.30
1880 2150 3.703001 TGTAGAAAAGCAAGAGGGAGG 57.297 47.619 0.00 0.00 0.00 4.30
1881 2151 4.899502 TCTTGTAGAAAAGCAAGAGGGAG 58.100 43.478 3.24 0.00 44.01 4.30
1882 2152 4.974645 TCTTGTAGAAAAGCAAGAGGGA 57.025 40.909 3.24 0.00 44.01 4.20
1916 2186 0.662619 TGCGGCAAAGTCAACTGAAG 59.337 50.000 0.00 0.00 0.00 3.02
1994 4238 4.341520 AGTCACTAGAATGGAACGGGATAC 59.658 45.833 0.00 0.00 0.00 2.24
2223 4467 7.712204 TGACCCTGAAATAAAGTAAAATCCC 57.288 36.000 0.00 0.00 0.00 3.85
2273 4517 4.003648 AGGAAACTAAGAAGACATTGCCG 58.996 43.478 0.00 0.00 40.61 5.69
2736 5005 5.551305 TCTGAAAGAATTGTCTCTCCACA 57.449 39.130 0.00 0.00 42.31 4.17
2862 5131 6.595326 TGCATAAATCTCAGTCAAACCTACAG 59.405 38.462 0.00 0.00 0.00 2.74
2943 5212 8.756927 AGACCTAGTAGTAACCAAATAAAGGTC 58.243 37.037 0.00 0.00 46.18 3.85
3091 5360 6.816140 TGTATCGTTGTCTCAGAATAATGCAA 59.184 34.615 0.00 0.00 0.00 4.08
3401 5670 0.892755 ACAAATGTCATGCCCAGCAG 59.107 50.000 0.00 0.00 43.65 4.24
3674 5944 0.662619 TGTGCTTCACTGAAAAGGCG 59.337 50.000 0.00 0.00 35.11 5.52
3791 6061 2.938451 CCTTTGCTCTCGACAATATGCA 59.062 45.455 0.00 0.00 0.00 3.96
3860 6130 5.895534 ACAAAATCACATGAGGAAGGCATAT 59.104 36.000 0.00 0.00 0.00 1.78
3866 6136 5.291178 TGCAAACAAAATCACATGAGGAAG 58.709 37.500 0.00 0.00 0.00 3.46
3880 6150 0.527385 GCAAGCCGACTGCAAACAAA 60.527 50.000 0.00 0.00 44.83 2.83
3883 6153 1.081840 GAGCAAGCCGACTGCAAAC 60.082 57.895 6.20 0.00 44.83 2.93
3971 6241 2.787035 TCCCCTAAACCCTGTTGTTCTT 59.213 45.455 0.00 0.00 0.00 2.52
4307 6577 5.781210 TCAAATGTTACACAGAAATGGCA 57.219 34.783 0.00 0.00 0.00 4.92
4326 6596 6.149474 GCTCTTACCATCACTTAGCTTTTCAA 59.851 38.462 0.00 0.00 0.00 2.69
4339 6609 3.674997 GTTGGAGTTGCTCTTACCATCA 58.325 45.455 0.00 0.00 0.00 3.07
4344 6614 4.304939 AGTTACGTTGGAGTTGCTCTTAC 58.695 43.478 0.00 0.00 0.00 2.34
4362 6632 0.963355 GGGTTGGCGCATTGGAGTTA 60.963 55.000 10.83 0.00 0.00 2.24
4391 6661 2.335011 GTTTGGGTTGGCGCAGAC 59.665 61.111 10.83 6.81 38.79 3.51
4392 6662 3.283684 CGTTTGGGTTGGCGCAGA 61.284 61.111 10.83 0.00 38.79 4.26
4393 6663 3.591835 ACGTTTGGGTTGGCGCAG 61.592 61.111 10.83 0.00 38.79 5.18
4394 6664 3.893763 CACGTTTGGGTTGGCGCA 61.894 61.111 10.83 0.00 35.68 6.09
4395 6665 3.418744 AACACGTTTGGGTTGGCGC 62.419 57.895 0.00 0.00 0.00 6.53
4396 6666 1.587613 CAACACGTTTGGGTTGGCG 60.588 57.895 8.25 0.00 40.44 5.69
4397 6667 0.526739 GACAACACGTTTGGGTTGGC 60.527 55.000 17.57 12.64 46.56 4.52
4398 6668 1.099689 AGACAACACGTTTGGGTTGG 58.900 50.000 17.57 3.89 46.56 3.77
4400 6670 0.454196 GCAGACAACACGTTTGGGTT 59.546 50.000 12.79 0.20 30.37 4.11
4401 6671 0.393808 AGCAGACAACACGTTTGGGT 60.394 50.000 12.79 0.00 30.37 4.51
4402 6672 0.738389 AAGCAGACAACACGTTTGGG 59.262 50.000 12.79 5.58 30.37 4.12
4403 6673 2.559998 AAAGCAGACAACACGTTTGG 57.440 45.000 12.79 0.00 30.37 3.28
4404 6674 3.481789 GCAAAAAGCAGACAACACGTTTG 60.482 43.478 8.35 8.35 44.79 2.93
4405 6675 2.666022 GCAAAAAGCAGACAACACGTTT 59.334 40.909 0.00 0.00 44.79 3.60
4406 6676 2.258755 GCAAAAAGCAGACAACACGTT 58.741 42.857 0.00 0.00 44.79 3.99
4426 6793 1.374252 CTCGACCGACCCAAACAGG 60.374 63.158 0.00 0.00 37.03 4.00
4427 6794 0.944311 CACTCGACCGACCCAAACAG 60.944 60.000 0.00 0.00 0.00 3.16
4439 6806 3.129462 TCAGACAATCTCATCCACTCGAC 59.871 47.826 0.00 0.00 0.00 4.20
4440 6807 3.356290 TCAGACAATCTCATCCACTCGA 58.644 45.455 0.00 0.00 0.00 4.04
4445 6812 5.705397 AGGAAATCAGACAATCTCATCCA 57.295 39.130 0.00 0.00 0.00 3.41
4465 6832 7.148656 CCAAACAAATAAAAAGCGGACAATAGG 60.149 37.037 0.00 0.00 0.00 2.57
4482 6858 3.571590 TGTTGGAGCTACCCAAACAAAT 58.428 40.909 8.39 0.00 46.68 2.32
4493 6869 0.403655 TGGGTTGCATGTTGGAGCTA 59.596 50.000 0.00 0.00 0.00 3.32
4495 6871 0.392336 TTTGGGTTGCATGTTGGAGC 59.608 50.000 0.00 0.00 0.00 4.70
4533 6910 3.004315 GCCGATCCAAACAGACAAAAAGA 59.996 43.478 0.00 0.00 0.00 2.52
4608 7010 2.669878 AAAAATGCATCGGCCACCT 58.330 47.368 2.24 0.00 40.13 4.00
4670 8392 1.195347 CATTTGCGTGCACGAAACAA 58.805 45.000 41.19 30.30 43.02 2.83
4677 8399 3.301642 GCTTATTCTTCATTTGCGTGCAC 59.698 43.478 6.82 6.82 0.00 4.57
4688 8410 9.467258 CAATTTCAGTTTCTTGCTTATTCTTCA 57.533 29.630 0.00 0.00 0.00 3.02
4695 8417 7.383029 CAGATTGCAATTTCAGTTTCTTGCTTA 59.617 33.333 14.33 0.00 43.33 3.09
4746 8468 7.013834 ACAGAACCCCACCTTCATTAATAAAA 58.986 34.615 0.00 0.00 0.00 1.52
4796 8519 0.505655 ACTTCGCGTACTTCGTTTGC 59.494 50.000 5.77 0.00 42.13 3.68
4802 8525 0.179248 GCTGCAACTTCGCGTACTTC 60.179 55.000 5.77 0.00 33.35 3.01
4819 8542 9.431887 TGTTTAGATTAAAAGTTCGTCATAGCT 57.568 29.630 0.00 0.00 0.00 3.32
4826 8549 7.644945 CGGGTTTTGTTTAGATTAAAAGTTCGT 59.355 33.333 0.00 0.00 0.00 3.85
4862 8585 3.951563 AATAGAGCCCTTAATGCACCA 57.048 42.857 0.00 0.00 0.00 4.17
4868 8591 4.354087 CCCCCTACAAATAGAGCCCTTAAT 59.646 45.833 0.00 0.00 0.00 1.40
4928 8651 3.005578 ACGACTCAGGAGGTGTTTTAGTC 59.994 47.826 0.83 0.00 0.00 2.59
4994 8721 2.393646 GGCCAGGCCCATGTAATTTTA 58.606 47.619 21.62 0.00 44.06 1.52
5008 8735 2.430694 GCCACCTTATTTTTAGGCCAGG 59.569 50.000 5.01 2.04 36.17 4.45
5015 8742 3.903360 GTGTTGCGCCACCTTATTTTTA 58.097 40.909 9.38 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.