Multiple sequence alignment - TraesCS6B01G218700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G218700 chr6B 100.000 4131 0 0 1 4131 306796905 306801035 0.000000e+00 7629.0
1 TraesCS6B01G218700 chr6B 96.296 81 3 0 3720 3800 306800705 306800785 2.590000e-27 134.0
2 TraesCS6B01G218700 chr6D 95.773 1869 60 13 1944 3800 219091151 219089290 0.000000e+00 2996.0
3 TraesCS6B01G218700 chr6D 90.392 1072 39 29 420 1463 219092693 219091658 0.000000e+00 1351.0
4 TraesCS6B01G218700 chr6D 87.438 406 30 3 1 386 219093094 219092690 8.150000e-122 448.0
5 TraesCS6B01G218700 chr6D 98.565 209 3 0 1623 1831 219091357 219091149 1.810000e-98 370.0
6 TraesCS6B01G218700 chr6D 86.738 279 27 3 3784 4062 219089386 219089118 6.710000e-78 302.0
7 TraesCS6B01G218700 chr6D 87.083 240 29 2 3802 4041 91526340 91526103 1.890000e-68 270.0
8 TraesCS6B01G218700 chr6D 92.045 88 7 0 1500 1587 808289 808202 1.560000e-24 124.0
9 TraesCS6B01G218700 chr6D 96.053 76 3 0 1556 1631 219091614 219091539 1.560000e-24 124.0
10 TraesCS6B01G218700 chr6A 95.439 1732 46 11 1944 3667 298563404 298565110 0.000000e+00 2730.0
11 TraesCS6B01G218700 chr6A 88.548 978 47 28 420 1370 298561740 298562679 0.000000e+00 1125.0
12 TraesCS6B01G218700 chr6A 92.827 474 21 8 1368 1831 298562936 298563406 0.000000e+00 675.0
13 TraesCS6B01G218700 chr6A 86.946 406 33 4 1 387 298561340 298561744 4.900000e-119 438.0
14 TraesCS6B01G218700 chr6A 92.941 85 6 0 1500 1584 381087516 381087600 1.560000e-24 124.0
15 TraesCS6B01G218700 chr7B 87.295 244 30 1 3798 4041 414077423 414077181 1.130000e-70 278.0
16 TraesCS6B01G218700 chr7B 96.610 118 4 0 1829 1946 501556750 501556867 3.260000e-46 196.0
17 TraesCS6B01G218700 chr5B 87.137 241 30 1 3802 4042 449204183 449204422 5.260000e-69 272.0
18 TraesCS6B01G218700 chr5B 98.333 120 2 0 1827 1946 689263875 689263994 1.160000e-50 211.0
19 TraesCS6B01G218700 chr5B 84.034 119 13 5 1472 1588 14707710 14707824 4.370000e-20 110.0
20 TraesCS6B01G218700 chr7D 87.083 240 30 1 3802 4041 176959069 176959307 1.890000e-68 270.0
21 TraesCS6B01G218700 chr7D 86.667 240 31 1 3802 4041 495857552 495857314 8.810000e-67 265.0
22 TraesCS6B01G218700 chr7D 81.048 248 38 8 3052 3298 369172939 369172700 5.450000e-44 189.0
23 TraesCS6B01G218700 chr7D 90.000 80 8 0 3721 3800 495857552 495857473 2.030000e-18 104.0
24 TraesCS6B01G218700 chr2B 86.122 245 33 1 3797 4041 264461827 264461584 3.170000e-66 263.0
25 TraesCS6B01G218700 chr2B 91.367 139 10 2 1809 1946 529598678 529598815 5.450000e-44 189.0
26 TraesCS6B01G218700 chr3D 85.484 248 35 1 3794 4041 158720722 158720968 1.470000e-64 257.0
27 TraesCS6B01G218700 chr3D 85.484 248 35 1 3794 4041 356407160 356407406 1.470000e-64 257.0
28 TraesCS6B01G218700 chr3D 97.468 79 2 0 1140 1218 24745358 24745436 7.200000e-28 135.0
29 TraesCS6B01G218700 chr3D 92.045 88 7 0 1500 1587 71512896 71512809 1.560000e-24 124.0
30 TraesCS6B01G218700 chr3D 92.135 89 6 1 1500 1588 525470219 525470132 1.560000e-24 124.0
31 TraesCS6B01G218700 chr3D 97.101 69 2 0 1150 1218 306007134 306007202 2.610000e-22 117.0
32 TraesCS6B01G218700 chr3B 98.291 117 2 0 1830 1946 88422030 88422146 5.410000e-49 206.0
33 TraesCS6B01G218700 chr3B 96.610 118 4 0 1829 1946 694025133 694025016 3.260000e-46 196.0
34 TraesCS6B01G218700 chr3B 93.701 127 8 0 1824 1950 141125379 141125505 1.520000e-44 191.0
35 TraesCS6B01G218700 chr3B 95.763 118 5 0 1829 1946 154471110 154470993 1.520000e-44 191.0
36 TraesCS6B01G218700 chr3B 88.350 103 10 2 1500 1601 548551165 548551266 5.610000e-24 122.0
37 TraesCS6B01G218700 chr3B 87.500 104 10 3 1489 1592 20443988 20444088 2.610000e-22 117.0
38 TraesCS6B01G218700 chr3B 86.667 90 12 0 3711 3800 323409687 323409776 2.630000e-17 100.0
39 TraesCS6B01G218700 chr1B 93.182 132 8 1 1821 1952 572677818 572677688 4.210000e-45 193.0
40 TraesCS6B01G218700 chr1B 95.763 118 5 0 1829 1946 95761764 95761647 1.520000e-44 191.0
41 TraesCS6B01G218700 chr1B 91.892 74 6 0 3720 3793 616094619 616094546 2.030000e-18 104.0
42 TraesCS6B01G218700 chr4D 89.147 129 12 2 321 448 163788554 163788427 4.270000e-35 159.0
43 TraesCS6B01G218700 chrUn 96.154 78 3 0 1141 1218 389316159 389316236 1.210000e-25 128.0
44 TraesCS6B01G218700 chrUn 97.333 75 2 0 1144 1218 389367731 389367657 1.210000e-25 128.0
45 TraesCS6B01G218700 chrUn 89.247 93 9 1 1500 1592 89396851 89396760 9.380000e-22 115.0
46 TraesCS6B01G218700 chrUn 87.500 80 10 0 3721 3800 87258538 87258459 4.400000e-15 93.5
47 TraesCS6B01G218700 chr4A 97.333 75 2 0 1144 1218 605364661 605364587 1.210000e-25 128.0
48 TraesCS6B01G218700 chr4A 89.024 82 5 4 3721 3800 688948295 688948216 9.450000e-17 99.0
49 TraesCS6B01G218700 chr4B 90.909 77 6 1 3718 3793 75359051 75358975 7.310000e-18 102.0
50 TraesCS6B01G218700 chr1D 88.608 79 7 2 3723 3800 282068649 282068572 1.220000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G218700 chr6B 306796905 306801035 4130 False 3881.500000 7629 98.148000 1 4131 2 chr6B.!!$F1 4130
1 TraesCS6B01G218700 chr6D 219089118 219093094 3976 True 931.833333 2996 92.493167 1 4062 6 chr6D.!!$R3 4061
2 TraesCS6B01G218700 chr6A 298561340 298565110 3770 False 1242.000000 2730 90.940000 1 3667 4 chr6A.!!$F2 3666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 751 0.039618 TGGGATGGTTGGAAAGAGGC 59.960 55.000 0.00 0.0 0.0 4.70 F
711 752 0.332972 GGGATGGTTGGAAAGAGGCT 59.667 55.000 0.00 0.0 0.0 4.58 F
715 756 0.401738 TGGTTGGAAAGAGGCTCAGG 59.598 55.000 18.26 0.0 0.0 3.86 F
896 937 0.528017 TCTACTGCTCGCCTTGTCAG 59.472 55.000 0.00 0.0 0.0 3.51 F
1843 2372 1.006758 ACTTCGTACTCCCTCCATCCA 59.993 52.381 0.00 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2450 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.9 44.66 4.18 R
1923 2452 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
1928 2457 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.0 44.66 4.30 R
1929 2458 0.032813 AATTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.0 42.90 5.14 R
3669 4211 1.067212 GTCGGTTAGATCATGCTCCGT 59.933 52.381 0.00 0.0 39.14 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.484715 CTGGCATCAATGAAAATTCAAGGT 58.515 37.500 0.00 0.00 41.13 3.50
105 106 1.083806 CCATGTCGACGTGGGATGTG 61.084 60.000 38.49 18.98 46.69 3.21
115 116 1.737793 CGTGGGATGTGGCTCTTAAAC 59.262 52.381 0.00 0.00 0.00 2.01
131 132 7.604545 GGCTCTTAAACCATATAGATCTTCCAC 59.395 40.741 0.00 0.00 0.00 4.02
176 196 3.145551 ACGGAAGTAGGCGGCGAT 61.146 61.111 12.98 0.00 46.88 4.58
182 202 4.849310 GTAGGCGGCGATTGGGCA 62.849 66.667 12.98 0.00 42.43 5.36
188 208 2.331893 CGGCGATTGGGCAAAGACA 61.332 57.895 0.00 0.00 42.43 3.41
191 211 1.066929 GGCGATTGGGCAAAGACAAAT 60.067 47.619 0.00 0.00 41.77 2.32
194 214 3.860378 GCGATTGGGCAAAGACAAATGAA 60.860 43.478 0.00 0.00 0.00 2.57
200 220 4.021192 TGGGCAAAGACAAATGAATCCTTC 60.021 41.667 0.00 0.00 0.00 3.46
206 226 2.689983 GACAAATGAATCCTTCCGCCAT 59.310 45.455 0.00 0.00 0.00 4.40
222 242 2.157738 GCCATGAAGCATAGGGATGAC 58.842 52.381 0.00 0.00 34.73 3.06
233 253 0.980231 AGGGATGACAGAGGACTGCC 60.980 60.000 0.00 0.00 46.95 4.85
263 283 0.539438 ATGCGAGCCAAAAGGGAACA 60.539 50.000 0.00 0.00 40.01 3.18
266 286 1.028905 CGAGCCAAAAGGGAACAACA 58.971 50.000 0.00 0.00 40.01 3.33
328 348 0.471022 GGGTGAGGAGGAGGAGGATC 60.471 65.000 0.00 0.00 0.00 3.36
358 379 2.506472 GGGTCAAGAGGGGATCGC 59.494 66.667 0.06 0.06 0.00 4.58
384 405 2.859992 GGCCATGATCCGATTAGGC 58.140 57.895 0.00 9.86 40.77 3.93
385 406 1.021390 GGCCATGATCCGATTAGGCG 61.021 60.000 0.00 0.00 42.89 5.52
392 413 2.353145 CCGATTAGGCGGTCGACG 60.353 66.667 9.92 6.26 46.07 5.12
403 424 4.093952 GTCGACGACGCCGGAAGA 62.094 66.667 12.94 0.00 40.78 2.87
404 425 3.796443 TCGACGACGCCGGAAGAG 61.796 66.667 5.05 0.81 40.78 2.85
409 430 4.821589 GACGCCGGAAGAGCCAGG 62.822 72.222 5.05 0.00 35.94 4.45
411 432 4.521062 CGCCGGAAGAGCCAGGAG 62.521 72.222 5.05 0.00 35.94 3.69
412 433 3.394836 GCCGGAAGAGCCAGGAGT 61.395 66.667 5.05 0.00 35.94 3.85
413 434 2.581354 CCGGAAGAGCCAGGAGTG 59.419 66.667 0.00 0.00 35.94 3.51
414 435 2.125350 CGGAAGAGCCAGGAGTGC 60.125 66.667 0.00 0.00 35.94 4.40
415 436 2.654079 CGGAAGAGCCAGGAGTGCT 61.654 63.158 0.00 0.00 43.03 4.40
416 437 1.323271 CGGAAGAGCCAGGAGTGCTA 61.323 60.000 0.00 0.00 39.69 3.49
417 438 0.463620 GGAAGAGCCAGGAGTGCTAG 59.536 60.000 0.00 0.00 39.69 3.42
418 439 1.190643 GAAGAGCCAGGAGTGCTAGT 58.809 55.000 0.00 0.00 39.69 2.57
429 450 4.435436 TGCTAGTGGCGGCAGACG 62.435 66.667 13.91 4.25 45.43 4.18
481 502 2.749621 GTCGTGGCAAGGATGAAGAAAT 59.250 45.455 0.00 0.00 0.00 2.17
488 509 3.429960 GCAAGGATGAAGAAATGGAAGGC 60.430 47.826 0.00 0.00 0.00 4.35
492 513 0.881118 TGAAGAAATGGAAGGCGTGC 59.119 50.000 0.00 0.00 0.00 5.34
493 514 1.168714 GAAGAAATGGAAGGCGTGCT 58.831 50.000 0.00 0.00 0.00 4.40
496 517 0.733909 GAAATGGAAGGCGTGCTTGC 60.734 55.000 0.00 0.00 0.00 4.01
497 518 1.181098 AAATGGAAGGCGTGCTTGCT 61.181 50.000 0.92 0.00 34.52 3.91
501 522 1.360192 GAAGGCGTGCTTGCTGTTT 59.640 52.632 0.92 0.00 34.52 2.83
557 598 3.838565 TCACACCAGGCTTCCAAAATTA 58.161 40.909 0.00 0.00 0.00 1.40
582 623 2.044650 AGTAGCGGCCCACTACGA 60.045 61.111 19.71 0.00 43.86 3.43
589 630 1.429148 CGGCCCACTACGAATTCTGC 61.429 60.000 3.52 0.00 0.00 4.26
594 635 1.134367 CCACTACGAATTCTGCTCGGA 59.866 52.381 3.52 0.00 40.64 4.55
603 644 4.926238 CGAATTCTGCTCGGAATAGCTAAT 59.074 41.667 0.00 0.00 43.19 1.73
635 676 4.457949 GTGACACGGGATTAAGTGGAAATT 59.542 41.667 0.00 0.00 42.25 1.82
664 705 3.007182 CCAAAATCATCCCAAACTGCTGT 59.993 43.478 0.00 0.00 0.00 4.40
675 716 3.319122 CCAAACTGCTGTTCTAAAGGCTT 59.681 43.478 9.60 0.00 34.96 4.35
694 735 7.112452 AGGCTTAAAATGCTAATAAACTGGG 57.888 36.000 0.00 0.00 0.00 4.45
695 736 6.895204 AGGCTTAAAATGCTAATAAACTGGGA 59.105 34.615 0.00 0.00 0.00 4.37
696 737 7.565029 AGGCTTAAAATGCTAATAAACTGGGAT 59.435 33.333 0.00 0.00 0.00 3.85
697 738 7.653311 GGCTTAAAATGCTAATAAACTGGGATG 59.347 37.037 0.00 0.00 0.00 3.51
698 739 7.653311 GCTTAAAATGCTAATAAACTGGGATGG 59.347 37.037 0.00 0.00 0.00 3.51
699 740 8.602472 TTAAAATGCTAATAAACTGGGATGGT 57.398 30.769 0.00 0.00 0.00 3.55
700 741 7.494922 AAAATGCTAATAAACTGGGATGGTT 57.505 32.000 0.00 0.00 0.00 3.67
701 742 6.469782 AATGCTAATAAACTGGGATGGTTG 57.530 37.500 0.00 0.00 0.00 3.77
702 743 4.277476 TGCTAATAAACTGGGATGGTTGG 58.723 43.478 0.00 0.00 0.00 3.77
703 744 4.017958 TGCTAATAAACTGGGATGGTTGGA 60.018 41.667 0.00 0.00 0.00 3.53
704 745 4.953579 GCTAATAAACTGGGATGGTTGGAA 59.046 41.667 0.00 0.00 0.00 3.53
705 746 5.420739 GCTAATAAACTGGGATGGTTGGAAA 59.579 40.000 0.00 0.00 0.00 3.13
706 747 6.405842 GCTAATAAACTGGGATGGTTGGAAAG 60.406 42.308 0.00 0.00 0.00 2.62
707 748 3.611025 AAACTGGGATGGTTGGAAAGA 57.389 42.857 0.00 0.00 0.00 2.52
708 749 2.887151 ACTGGGATGGTTGGAAAGAG 57.113 50.000 0.00 0.00 0.00 2.85
709 750 1.355720 ACTGGGATGGTTGGAAAGAGG 59.644 52.381 0.00 0.00 0.00 3.69
710 751 0.039618 TGGGATGGTTGGAAAGAGGC 59.960 55.000 0.00 0.00 0.00 4.70
711 752 0.332972 GGGATGGTTGGAAAGAGGCT 59.667 55.000 0.00 0.00 0.00 4.58
712 753 1.683319 GGGATGGTTGGAAAGAGGCTC 60.683 57.143 6.34 6.34 0.00 4.70
713 754 1.004745 GGATGGTTGGAAAGAGGCTCA 59.995 52.381 18.26 0.00 0.00 4.26
714 755 2.363683 GATGGTTGGAAAGAGGCTCAG 58.636 52.381 18.26 0.00 0.00 3.35
715 756 0.401738 TGGTTGGAAAGAGGCTCAGG 59.598 55.000 18.26 0.00 0.00 3.86
716 757 0.693049 GGTTGGAAAGAGGCTCAGGA 59.307 55.000 18.26 0.00 0.00 3.86
733 774 2.092538 CAGGACTGAGATGGCTGGAAAT 60.093 50.000 0.00 0.00 0.00 2.17
736 777 3.118261 GGACTGAGATGGCTGGAAATACA 60.118 47.826 0.00 0.00 0.00 2.29
747 788 7.136822 TGGCTGGAAATACACTCAGTTATAT 57.863 36.000 0.00 0.00 0.00 0.86
792 833 4.468510 TGGAATAGTGATTTGACCGGTAGT 59.531 41.667 7.34 0.00 0.00 2.73
798 839 2.290641 TGATTTGACCGGTAGTGCCAAT 60.291 45.455 7.34 0.00 36.97 3.16
801 842 0.981183 TGACCGGTAGTGCCAATTCT 59.019 50.000 7.34 0.00 36.97 2.40
802 843 1.349688 TGACCGGTAGTGCCAATTCTT 59.650 47.619 7.34 0.00 36.97 2.52
803 844 2.007608 GACCGGTAGTGCCAATTCTTC 58.992 52.381 7.34 0.00 36.97 2.87
895 936 1.134995 CATCTACTGCTCGCCTTGTCA 60.135 52.381 0.00 0.00 0.00 3.58
896 937 0.528017 TCTACTGCTCGCCTTGTCAG 59.472 55.000 0.00 0.00 0.00 3.51
1011 1052 2.252072 GACCGGCCATGTCTTGCCTA 62.252 60.000 13.77 0.00 45.71 3.93
1018 1059 3.740128 ATGTCTTGCCTAGCCGCGG 62.740 63.158 24.05 24.05 0.00 6.46
1112 1153 1.153349 GGTCCGTTGAGCCTCATCC 60.153 63.158 0.00 0.00 32.76 3.51
1319 1367 3.659786 TGTACTTGCTGCTTTGTACGAT 58.340 40.909 17.85 0.00 38.35 3.73
1345 1393 5.534207 TCATGGTTTGTGCTTGAGATTTT 57.466 34.783 0.00 0.00 0.00 1.82
1356 1404 6.995686 TGTGCTTGAGATTTTACAACTTCCTA 59.004 34.615 0.00 0.00 0.00 2.94
1358 1406 6.149474 TGCTTGAGATTTTACAACTTCCTAGC 59.851 38.462 0.00 0.00 0.00 3.42
1360 1408 5.175859 TGAGATTTTACAACTTCCTAGCCG 58.824 41.667 0.00 0.00 0.00 5.52
1431 1738 5.520288 CAGTATCATTAGTGTGCTAAAGCGT 59.480 40.000 0.00 0.00 45.83 5.07
1463 1770 9.143155 TCTGCATCAAACTGGTAGATATACTTA 57.857 33.333 0.00 0.00 0.00 2.24
1464 1771 9.935241 CTGCATCAAACTGGTAGATATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
1500 1807 9.469807 CAGTGAATGACTTATCTCTTATGTACC 57.530 37.037 0.00 0.00 29.75 3.34
1501 1808 8.643324 AGTGAATGACTTATCTCTTATGTACCC 58.357 37.037 0.00 0.00 0.00 3.69
1502 1809 8.421784 GTGAATGACTTATCTCTTATGTACCCA 58.578 37.037 0.00 0.00 0.00 4.51
1504 1811 9.832445 GAATGACTTATCTCTTATGTACCCAAA 57.168 33.333 0.00 0.00 0.00 3.28
1608 1947 8.912787 ACTAGACTAACATCTACAAACATTCG 57.087 34.615 0.00 0.00 0.00 3.34
1838 2367 5.397142 TTTTCTAACTTCGTACTCCCTCC 57.603 43.478 0.00 0.00 0.00 4.30
1839 2368 3.726557 TCTAACTTCGTACTCCCTCCA 57.273 47.619 0.00 0.00 0.00 3.86
1840 2369 4.246712 TCTAACTTCGTACTCCCTCCAT 57.753 45.455 0.00 0.00 0.00 3.41
1841 2370 4.205587 TCTAACTTCGTACTCCCTCCATC 58.794 47.826 0.00 0.00 0.00 3.51
1842 2371 1.777941 ACTTCGTACTCCCTCCATCC 58.222 55.000 0.00 0.00 0.00 3.51
1843 2372 1.006758 ACTTCGTACTCCCTCCATCCA 59.993 52.381 0.00 0.00 0.00 3.41
1844 2373 2.108168 CTTCGTACTCCCTCCATCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1845 2374 2.241281 TCGTACTCCCTCCATCCAAA 57.759 50.000 0.00 0.00 0.00 3.28
1846 2375 2.542550 TCGTACTCCCTCCATCCAAAA 58.457 47.619 0.00 0.00 0.00 2.44
1847 2376 2.907696 TCGTACTCCCTCCATCCAAAAA 59.092 45.455 0.00 0.00 0.00 1.94
1848 2377 3.521937 TCGTACTCCCTCCATCCAAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
1849 2378 4.717778 TCGTACTCCCTCCATCCAAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
1850 2379 4.814771 CGTACTCCCTCCATCCAAAAATAC 59.185 45.833 0.00 0.00 0.00 1.89
1851 2380 5.396436 CGTACTCCCTCCATCCAAAAATACT 60.396 44.000 0.00 0.00 0.00 2.12
1852 2381 5.536497 ACTCCCTCCATCCAAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
1853 2382 5.264395 ACTCCCTCCATCCAAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
1854 2383 5.222337 ACTCCCTCCATCCAAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
1855 2384 5.261216 TCCCTCCATCCAAAAATACTTGTC 58.739 41.667 0.00 0.00 0.00 3.18
1856 2385 4.096382 CCCTCCATCCAAAAATACTTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
1857 2386 4.096382 CCTCCATCCAAAAATACTTGTCGG 59.904 45.833 0.00 0.00 0.00 4.79
1858 2387 4.912586 TCCATCCAAAAATACTTGTCGGA 58.087 39.130 0.00 0.00 0.00 4.55
1859 2388 4.941263 TCCATCCAAAAATACTTGTCGGAG 59.059 41.667 0.00 0.00 0.00 4.63
1860 2389 4.941263 CCATCCAAAAATACTTGTCGGAGA 59.059 41.667 0.00 0.00 0.00 3.71
1861 2390 5.414454 CCATCCAAAAATACTTGTCGGAGAA 59.586 40.000 0.00 0.00 39.69 2.87
1862 2391 6.072175 CCATCCAAAAATACTTGTCGGAGAAA 60.072 38.462 0.00 0.00 39.69 2.52
1863 2392 7.362920 CCATCCAAAAATACTTGTCGGAGAAAT 60.363 37.037 0.00 0.00 39.69 2.17
1864 2393 7.519032 TCCAAAAATACTTGTCGGAGAAATT 57.481 32.000 0.00 0.00 39.69 1.82
1865 2394 7.367285 TCCAAAAATACTTGTCGGAGAAATTG 58.633 34.615 0.00 0.00 39.69 2.32
1866 2395 7.229707 TCCAAAAATACTTGTCGGAGAAATTGA 59.770 33.333 0.00 0.00 39.69 2.57
1867 2396 8.028938 CCAAAAATACTTGTCGGAGAAATTGAT 58.971 33.333 0.00 0.00 39.69 2.57
1870 2399 9.667107 AAAATACTTGTCGGAGAAATTGATAGA 57.333 29.630 0.00 0.00 39.69 1.98
1871 2400 9.667107 AAATACTTGTCGGAGAAATTGATAGAA 57.333 29.630 0.00 0.00 39.69 2.10
1872 2401 9.667107 AATACTTGTCGGAGAAATTGATAGAAA 57.333 29.630 0.00 0.00 39.69 2.52
1873 2402 9.838339 ATACTTGTCGGAGAAATTGATAGAAAT 57.162 29.630 0.00 0.00 39.69 2.17
1874 2403 7.978982 ACTTGTCGGAGAAATTGATAGAAATG 58.021 34.615 0.00 0.00 39.69 2.32
1875 2404 6.925610 TGTCGGAGAAATTGATAGAAATGG 57.074 37.500 0.00 0.00 39.69 3.16
1876 2405 6.649155 TGTCGGAGAAATTGATAGAAATGGA 58.351 36.000 0.00 0.00 39.69 3.41
1877 2406 7.282585 TGTCGGAGAAATTGATAGAAATGGAT 58.717 34.615 0.00 0.00 39.69 3.41
1878 2407 7.227314 TGTCGGAGAAATTGATAGAAATGGATG 59.773 37.037 0.00 0.00 39.69 3.51
1879 2408 7.227512 GTCGGAGAAATTGATAGAAATGGATGT 59.772 37.037 0.00 0.00 39.69 3.06
1880 2409 8.428852 TCGGAGAAATTGATAGAAATGGATGTA 58.571 33.333 0.00 0.00 0.00 2.29
1881 2410 9.224267 CGGAGAAATTGATAGAAATGGATGTAT 57.776 33.333 0.00 0.00 0.00 2.29
1919 2448 6.582677 AGTCTAGATACATCCATTTCTCCG 57.417 41.667 0.00 0.00 0.00 4.63
1920 2449 6.307776 AGTCTAGATACATCCATTTCTCCGA 58.692 40.000 0.00 0.00 0.00 4.55
1921 2450 6.207810 AGTCTAGATACATCCATTTCTCCGAC 59.792 42.308 0.00 0.00 0.00 4.79
1922 2451 4.244425 AGATACATCCATTTCTCCGACG 57.756 45.455 0.00 0.00 0.00 5.12
1923 2452 3.889538 AGATACATCCATTTCTCCGACGA 59.110 43.478 0.00 0.00 0.00 4.20
1924 2453 2.586258 ACATCCATTTCTCCGACGAG 57.414 50.000 0.00 0.00 37.48 4.18
1925 2454 1.825474 ACATCCATTTCTCCGACGAGT 59.175 47.619 0.00 0.00 37.40 4.18
1926 2455 3.021695 ACATCCATTTCTCCGACGAGTA 58.978 45.455 0.00 0.00 37.40 2.59
1927 2456 3.637229 ACATCCATTTCTCCGACGAGTAT 59.363 43.478 0.00 0.00 37.40 2.12
1928 2457 4.099573 ACATCCATTTCTCCGACGAGTATT 59.900 41.667 0.00 0.00 37.40 1.89
1929 2458 4.730949 TCCATTTCTCCGACGAGTATTT 57.269 40.909 0.00 0.00 37.40 1.40
1930 2459 4.679662 TCCATTTCTCCGACGAGTATTTC 58.320 43.478 0.00 0.00 37.40 2.17
1931 2460 3.802685 CCATTTCTCCGACGAGTATTTCC 59.197 47.826 0.00 0.00 37.40 3.13
1932 2461 2.838386 TTCTCCGACGAGTATTTCCG 57.162 50.000 0.00 0.00 37.40 4.30
1933 2462 1.019673 TCTCCGACGAGTATTTCCGG 58.980 55.000 0.00 0.00 41.36 5.14
1934 2463 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
1935 2464 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
1936 2465 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
1937 2466 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
1938 2467 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
1939 2468 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
1940 2469 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
1941 2470 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
1942 2471 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1943 2472 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1944 2473 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1945 2474 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1956 2485 2.210961 GGAGGGAGTAATTAACAGCGC 58.789 52.381 0.00 0.00 0.00 5.92
1976 2505 5.010719 AGCGCACTTAGCTTACCTCAATATA 59.989 40.000 11.47 0.00 43.24 0.86
2137 2667 4.522789 CCCCGACCCTGAATTATTTTATGG 59.477 45.833 0.00 0.00 0.00 2.74
2309 2839 1.206610 GTGCCAGCTTCATCTCTCTGA 59.793 52.381 0.00 0.00 0.00 3.27
2322 2852 9.178427 CTTCATCTCTCTGAAAATTTGTTGTTC 57.822 33.333 0.00 0.00 34.86 3.18
2347 2877 6.014499 CCTTGTCCTCTTAAAACCAGAGACTA 60.014 42.308 0.00 0.00 40.39 2.59
2363 2893 7.607991 ACCAGAGACTATGTTGGTAATTTGAAG 59.392 37.037 0.00 0.00 41.92 3.02
2555 3086 7.775053 AATAATTTGTACTTCTTCTTGGCCA 57.225 32.000 0.00 0.00 0.00 5.36
2558 3089 4.640771 TTGTACTTCTTCTTGGCCATCT 57.359 40.909 6.09 0.00 0.00 2.90
2979 3510 3.430042 TGCTTTCTGGAAGATTCAGCT 57.570 42.857 0.00 0.00 46.36 4.24
3018 3549 2.575735 TCCATCATACTTGAGCACCCAA 59.424 45.455 0.00 0.00 34.73 4.12
3036 3567 6.605849 CACCCAATCTATCTTAATTCATGCG 58.394 40.000 0.00 0.00 0.00 4.73
3127 3658 4.232091 ACCCACGTATAGATCCCTTTGAT 58.768 43.478 0.00 0.00 36.01 2.57
3148 3679 2.453983 AATGTTGGGCAATTTGACGG 57.546 45.000 0.00 0.00 0.00 4.79
3288 3819 9.784680 GCATTAATGATGATCAGATCAAATACC 57.215 33.333 19.73 5.43 43.50 2.73
3454 3985 3.202001 CCTGGCCCGCATAACACG 61.202 66.667 0.00 0.00 0.00 4.49
3471 4002 1.673400 CACGGACAAACATCCAACACA 59.327 47.619 0.00 0.00 38.87 3.72
3472 4003 2.098280 CACGGACAAACATCCAACACAA 59.902 45.455 0.00 0.00 38.87 3.33
3585 4126 6.716438 TCTTTCGATGAGACAGTAACTATCG 58.284 40.000 0.00 0.00 38.86 2.92
3589 4130 6.659776 TCGATGAGACAGTAACTATCGATTG 58.340 40.000 1.71 3.78 40.71 2.67
3590 4131 6.482308 TCGATGAGACAGTAACTATCGATTGA 59.518 38.462 13.87 0.00 40.71 2.57
3591 4132 7.173390 TCGATGAGACAGTAACTATCGATTGAT 59.827 37.037 13.87 4.36 40.71 2.57
3592 4133 7.805542 CGATGAGACAGTAACTATCGATTGATT 59.194 37.037 13.87 6.84 39.60 2.57
3611 4152 8.697507 ATTGATTTTGGAGTAGACTTTGACTT 57.302 30.769 0.00 0.00 0.00 3.01
3618 4159 5.221461 TGGAGTAGACTTTGACTTTCTGACC 60.221 44.000 0.00 0.00 0.00 4.02
3669 4211 6.132791 ACTCTAAGAAGTTATTGATCGCGA 57.867 37.500 13.09 13.09 0.00 5.87
3675 4217 0.503117 GTTATTGATCGCGACGGAGC 59.497 55.000 12.93 0.00 0.00 4.70
3682 4224 1.800283 ATCGCGACGGAGCATGATCT 61.800 55.000 12.93 0.00 36.85 2.75
3684 4226 0.317854 CGCGACGGAGCATGATCTAA 60.318 55.000 11.34 0.00 36.85 2.10
3686 4228 1.772182 CGACGGAGCATGATCTAACC 58.228 55.000 11.34 0.00 0.00 2.85
3687 4229 1.772182 GACGGAGCATGATCTAACCG 58.228 55.000 11.34 9.10 44.77 4.44
3689 4231 1.067212 ACGGAGCATGATCTAACCGAC 59.933 52.381 14.83 0.00 42.40 4.79
3707 4249 4.024641 ACCGACGAAGAACAAACAATAACC 60.025 41.667 0.00 0.00 0.00 2.85
3747 4289 1.780309 TCCATCCTGGTTTGTTGGTCT 59.220 47.619 0.00 0.00 39.03 3.85
3753 4295 3.460340 TCCTGGTTTGTTGGTCTCCTTTA 59.540 43.478 0.00 0.00 0.00 1.85
3811 4353 9.189156 ACTAACAATACGTTATTACTACCTCCA 57.811 33.333 0.00 0.00 39.36 3.86
3814 4356 7.664758 ACAATACGTTATTACTACCTCCATCC 58.335 38.462 0.00 0.00 0.00 3.51
3815 4357 7.508296 ACAATACGTTATTACTACCTCCATCCT 59.492 37.037 0.00 0.00 0.00 3.24
3816 4358 8.365647 CAATACGTTATTACTACCTCCATCCTT 58.634 37.037 0.00 0.00 0.00 3.36
3817 4359 6.158023 ACGTTATTACTACCTCCATCCTTG 57.842 41.667 0.00 0.00 0.00 3.61
3818 4360 5.659971 ACGTTATTACTACCTCCATCCTTGT 59.340 40.000 0.00 0.00 0.00 3.16
3819 4361 6.155737 ACGTTATTACTACCTCCATCCTTGTT 59.844 38.462 0.00 0.00 0.00 2.83
3820 4362 7.046033 CGTTATTACTACCTCCATCCTTGTTT 58.954 38.462 0.00 0.00 0.00 2.83
3821 4363 7.011109 CGTTATTACTACCTCCATCCTTGTTTG 59.989 40.741 0.00 0.00 0.00 2.93
3822 4364 5.836024 TTACTACCTCCATCCTTGTTTGT 57.164 39.130 0.00 0.00 0.00 2.83
3823 4365 4.724279 ACTACCTCCATCCTTGTTTGTT 57.276 40.909 0.00 0.00 0.00 2.83
3824 4366 4.398319 ACTACCTCCATCCTTGTTTGTTG 58.602 43.478 0.00 0.00 0.00 3.33
3825 4367 2.597455 ACCTCCATCCTTGTTTGTTGG 58.403 47.619 0.00 0.00 0.00 3.77
3826 4368 2.091333 ACCTCCATCCTTGTTTGTTGGT 60.091 45.455 0.00 0.00 0.00 3.67
3827 4369 2.558359 CCTCCATCCTTGTTTGTTGGTC 59.442 50.000 0.00 0.00 0.00 4.02
3828 4370 3.490348 CTCCATCCTTGTTTGTTGGTCT 58.510 45.455 0.00 0.00 0.00 3.85
3829 4371 3.891366 CTCCATCCTTGTTTGTTGGTCTT 59.109 43.478 0.00 0.00 0.00 3.01
3830 4372 3.888930 TCCATCCTTGTTTGTTGGTCTTC 59.111 43.478 0.00 0.00 0.00 2.87
3831 4373 3.891366 CCATCCTTGTTTGTTGGTCTTCT 59.109 43.478 0.00 0.00 0.00 2.85
3832 4374 4.342092 CCATCCTTGTTTGTTGGTCTTCTT 59.658 41.667 0.00 0.00 0.00 2.52
3833 4375 5.163416 CCATCCTTGTTTGTTGGTCTTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
3834 4376 6.040391 CCATCCTTGTTTGTTGGTCTTCTTTA 59.960 38.462 0.00 0.00 0.00 1.85
3835 4377 7.255942 CCATCCTTGTTTGTTGGTCTTCTTTAT 60.256 37.037 0.00 0.00 0.00 1.40
3836 4378 8.792633 CATCCTTGTTTGTTGGTCTTCTTTATA 58.207 33.333 0.00 0.00 0.00 0.98
3837 4379 8.754991 TCCTTGTTTGTTGGTCTTCTTTATAA 57.245 30.769 0.00 0.00 0.00 0.98
3838 4380 9.362151 TCCTTGTTTGTTGGTCTTCTTTATAAT 57.638 29.630 0.00 0.00 0.00 1.28
3839 4381 9.981114 CCTTGTTTGTTGGTCTTCTTTATAATT 57.019 29.630 0.00 0.00 0.00 1.40
3845 4387 9.959749 TTGTTGGTCTTCTTTATAATTTGTGTC 57.040 29.630 0.00 0.00 0.00 3.67
3846 4388 9.126151 TGTTGGTCTTCTTTATAATTTGTGTCA 57.874 29.630 0.00 0.00 0.00 3.58
3847 4389 9.959749 GTTGGTCTTCTTTATAATTTGTGTCAA 57.040 29.630 0.00 0.00 0.00 3.18
3896 4438 7.649705 ACAATACGTTAATGCATGTCAACAAAA 59.350 29.630 0.00 0.00 0.00 2.44
3907 4449 8.978564 TGCATGTCAACAAAAATTATATCGTT 57.021 26.923 0.00 0.00 0.00 3.85
3977 4519 9.356433 TGACATGCATGAACATTTTATAAGTTG 57.644 29.630 32.75 1.41 0.00 3.16
3997 4539 8.661352 AAGTTGAACTTATGGTCAAAATTTGG 57.339 30.769 9.13 0.00 36.52 3.28
4001 4543 7.901029 TGAACTTATGGTCAAAATTTGGCATA 58.099 30.769 12.62 5.69 36.88 3.14
4003 4545 6.877236 ACTTATGGTCAAAATTTGGCATAGG 58.123 36.000 12.62 10.28 36.88 2.57
4012 4554 7.439056 GTCAAAATTTGGCATAGGATACAATGG 59.561 37.037 5.33 0.00 34.95 3.16
4015 4557 1.710244 TGGCATAGGATACAATGGGGG 59.290 52.381 0.00 0.00 41.41 5.40
4017 4559 1.616994 GCATAGGATACAATGGGGGCC 60.617 57.143 0.00 0.00 41.41 5.80
4027 4569 1.912043 CAATGGGGGCCAATAAACCAA 59.088 47.619 4.39 0.00 36.95 3.67
4031 4573 1.551329 GGGGGCCAATAAACCAAGACA 60.551 52.381 4.39 0.00 0.00 3.41
4032 4574 2.252714 GGGGCCAATAAACCAAGACAA 58.747 47.619 4.39 0.00 0.00 3.18
4033 4575 2.635427 GGGGCCAATAAACCAAGACAAA 59.365 45.455 4.39 0.00 0.00 2.83
4034 4576 3.306710 GGGGCCAATAAACCAAGACAAAG 60.307 47.826 4.39 0.00 0.00 2.77
4035 4577 3.306710 GGGCCAATAAACCAAGACAAAGG 60.307 47.826 4.39 0.00 0.00 3.11
4036 4578 3.323691 GGCCAATAAACCAAGACAAAGGT 59.676 43.478 0.00 0.00 40.61 3.50
4037 4579 4.525100 GGCCAATAAACCAAGACAAAGGTA 59.475 41.667 0.00 0.00 37.07 3.08
4038 4580 5.336451 GGCCAATAAACCAAGACAAAGGTAG 60.336 44.000 0.00 0.00 37.07 3.18
4052 4594 9.452287 AAGACAAAGGTAGTAACTAACAAAACA 57.548 29.630 0.00 0.00 0.00 2.83
4066 4608 8.880878 ACTAACAAAACACAAAGAAAACTTGT 57.119 26.923 0.00 0.00 37.49 3.16
4067 4609 8.974408 ACTAACAAAACACAAAGAAAACTTGTC 58.026 29.630 0.00 0.00 34.80 3.18
4068 4610 7.778470 AACAAAACACAAAGAAAACTTGTCA 57.222 28.000 0.00 0.00 34.80 3.58
4069 4611 7.778470 ACAAAACACAAAGAAAACTTGTCAA 57.222 28.000 0.00 0.00 34.80 3.18
4070 4612 8.202745 ACAAAACACAAAGAAAACTTGTCAAA 57.797 26.923 0.00 0.00 34.80 2.69
4071 4613 8.669243 ACAAAACACAAAGAAAACTTGTCAAAA 58.331 25.926 0.00 0.00 34.80 2.44
4072 4614 9.495754 CAAAACACAAAGAAAACTTGTCAAAAA 57.504 25.926 0.00 0.00 34.80 1.94
4073 4615 9.497030 AAAACACAAAGAAAACTTGTCAAAAAC 57.503 25.926 0.00 0.00 34.80 2.43
4074 4616 7.778470 ACACAAAGAAAACTTGTCAAAAACA 57.222 28.000 0.00 0.00 34.80 2.83
4075 4617 8.202745 ACACAAAGAAAACTTGTCAAAAACAA 57.797 26.923 0.00 0.00 45.60 2.83
4076 4618 8.669243 ACACAAAGAAAACTTGTCAAAAACAAA 58.331 25.926 0.00 0.00 46.95 2.83
4077 4619 9.495754 CACAAAGAAAACTTGTCAAAAACAAAA 57.504 25.926 0.00 0.00 46.95 2.44
4108 4650 9.512588 AAGAAAACACTATGAGATTGATCAACT 57.487 29.630 11.07 10.06 31.76 3.16
4109 4651 9.512588 AGAAAACACTATGAGATTGATCAACTT 57.487 29.630 11.07 1.35 31.76 2.66
4110 4652 9.552114 GAAAACACTATGAGATTGATCAACTTG 57.448 33.333 11.07 7.49 31.76 3.16
4111 4653 8.627208 AAACACTATGAGATTGATCAACTTGT 57.373 30.769 11.07 8.04 31.76 3.16
4112 4654 9.725019 AAACACTATGAGATTGATCAACTTGTA 57.275 29.630 11.07 6.70 31.76 2.41
4113 4655 9.896645 AACACTATGAGATTGATCAACTTGTAT 57.103 29.630 11.07 4.97 31.76 2.29
4120 4662 9.591792 TGAGATTGATCAACTTGTATAAGACTG 57.408 33.333 11.07 3.41 37.36 3.51
4121 4663 9.809096 GAGATTGATCAACTTGTATAAGACTGA 57.191 33.333 11.07 8.39 37.36 3.41
4122 4664 9.814899 AGATTGATCAACTTGTATAAGACTGAG 57.185 33.333 11.07 0.00 37.36 3.35
4123 4665 9.809096 GATTGATCAACTTGTATAAGACTGAGA 57.191 33.333 11.07 0.00 37.36 3.27
4124 4666 9.814899 ATTGATCAACTTGTATAAGACTGAGAG 57.185 33.333 11.07 0.00 37.36 3.20
4125 4667 7.776107 TGATCAACTTGTATAAGACTGAGAGG 58.224 38.462 6.19 0.00 37.36 3.69
4126 4668 7.397476 TGATCAACTTGTATAAGACTGAGAGGT 59.603 37.037 6.19 0.00 37.36 3.85
4127 4669 6.925211 TCAACTTGTATAAGACTGAGAGGTG 58.075 40.000 6.19 0.00 37.36 4.00
4128 4670 5.923733 ACTTGTATAAGACTGAGAGGTGG 57.076 43.478 6.19 0.00 37.36 4.61
4129 4671 4.160626 ACTTGTATAAGACTGAGAGGTGGC 59.839 45.833 6.19 0.00 37.36 5.01
4130 4672 2.688446 TGTATAAGACTGAGAGGTGGCG 59.312 50.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 7.604545 GTGGAAGATCTATATGGTTTAAGAGCC 59.395 40.741 0.00 0.00 0.00 4.70
115 116 4.164988 GGATGGGGTGGAAGATCTATATGG 59.835 50.000 0.00 0.00 0.00 2.74
176 196 3.903090 AGGATTCATTTGTCTTTGCCCAA 59.097 39.130 0.00 0.00 0.00 4.12
194 214 0.184451 ATGCTTCATGGCGGAAGGAT 59.816 50.000 16.29 16.29 46.62 3.24
200 220 0.037303 ATCCCTATGCTTCATGGCGG 59.963 55.000 0.00 0.00 34.52 6.13
206 226 2.702478 CCTCTGTCATCCCTATGCTTCA 59.298 50.000 0.00 0.00 32.76 3.02
241 261 2.764314 CCCTTTTGGCTCGCATCCG 61.764 63.158 0.00 0.00 38.58 4.18
247 267 1.001378 CTGTTGTTCCCTTTTGGCTCG 60.001 52.381 0.00 0.00 38.58 5.03
263 283 2.465813 CTCCTCCTGGTCATCTCTGTT 58.534 52.381 0.00 0.00 34.23 3.16
266 286 0.398381 GCCTCCTCCTGGTCATCTCT 60.398 60.000 0.00 0.00 34.23 3.10
328 348 2.092646 TCTTGACCCGGGGACAAATATG 60.093 50.000 26.73 17.29 36.98 1.78
386 407 3.996744 CTCTTCCGGCGTCGTCGAC 62.997 68.421 22.65 15.51 42.36 4.20
387 408 3.796443 CTCTTCCGGCGTCGTCGA 61.796 66.667 22.65 3.88 39.71 4.20
392 413 4.821589 CCTGGCTCTTCCGGCGTC 62.822 72.222 6.01 0.00 40.05 5.19
394 415 4.521062 CTCCTGGCTCTTCCGGCG 62.521 72.222 0.00 0.00 40.05 6.46
395 416 3.394836 ACTCCTGGCTCTTCCGGC 61.395 66.667 0.00 0.00 40.05 6.13
396 417 2.581354 CACTCCTGGCTCTTCCGG 59.419 66.667 0.00 0.00 41.11 5.14
397 418 1.323271 TAGCACTCCTGGCTCTTCCG 61.323 60.000 0.00 0.00 42.62 4.30
398 419 0.463620 CTAGCACTCCTGGCTCTTCC 59.536 60.000 0.00 0.00 42.62 3.46
399 420 1.134848 CACTAGCACTCCTGGCTCTTC 60.135 57.143 0.00 0.00 42.62 2.87
400 421 0.901124 CACTAGCACTCCTGGCTCTT 59.099 55.000 0.00 0.00 42.62 2.85
401 422 0.975040 CCACTAGCACTCCTGGCTCT 60.975 60.000 0.00 0.00 42.62 4.09
402 423 1.519719 CCACTAGCACTCCTGGCTC 59.480 63.158 0.00 0.00 42.62 4.70
403 424 2.664081 GCCACTAGCACTCCTGGCT 61.664 63.158 11.52 0.00 44.99 4.75
404 425 2.124942 GCCACTAGCACTCCTGGC 60.125 66.667 4.23 4.23 42.41 4.85
405 426 2.185350 CGCCACTAGCACTCCTGG 59.815 66.667 0.00 0.00 44.04 4.45
406 427 2.185350 CCGCCACTAGCACTCCTG 59.815 66.667 0.00 0.00 44.04 3.86
407 428 3.775654 GCCGCCACTAGCACTCCT 61.776 66.667 0.00 0.00 44.04 3.69
408 429 4.082523 TGCCGCCACTAGCACTCC 62.083 66.667 0.00 0.00 44.04 3.85
409 430 2.510238 CTGCCGCCACTAGCACTC 60.510 66.667 0.00 0.00 44.04 3.51
410 431 2.997315 TCTGCCGCCACTAGCACT 60.997 61.111 0.00 0.00 44.04 4.40
411 432 2.815647 GTCTGCCGCCACTAGCAC 60.816 66.667 0.00 0.00 44.04 4.40
412 433 4.435436 CGTCTGCCGCCACTAGCA 62.435 66.667 0.00 0.00 44.04 3.49
429 450 3.179443 TGATCTCGTGATTAGGGTTGC 57.821 47.619 0.87 0.00 32.19 4.17
481 502 2.979676 CAGCAAGCACGCCTTCCA 60.980 61.111 0.00 0.00 0.00 3.53
582 623 5.858381 TCATTAGCTATTCCGAGCAGAATT 58.142 37.500 0.00 0.00 45.43 2.17
589 630 4.677378 CGTCACTTCATTAGCTATTCCGAG 59.323 45.833 0.00 0.00 0.00 4.63
594 635 5.577164 GTGTCACGTCACTTCATTAGCTATT 59.423 40.000 0.00 0.00 35.68 1.73
603 644 1.066752 CCCGTGTCACGTCACTTCA 59.933 57.895 23.01 0.00 40.58 3.02
635 676 2.808919 TGGGATGATTTTGGCCGTTAA 58.191 42.857 0.00 0.00 0.00 2.01
675 716 8.474025 CAACCATCCCAGTTTATTAGCATTTTA 58.526 33.333 0.00 0.00 0.00 1.52
688 729 2.225117 CCTCTTTCCAACCATCCCAGTT 60.225 50.000 0.00 0.00 0.00 3.16
690 731 1.957113 GCCTCTTTCCAACCATCCCAG 60.957 57.143 0.00 0.00 0.00 4.45
691 732 0.039618 GCCTCTTTCCAACCATCCCA 59.960 55.000 0.00 0.00 0.00 4.37
692 733 0.332972 AGCCTCTTTCCAACCATCCC 59.667 55.000 0.00 0.00 0.00 3.85
693 734 1.004745 TGAGCCTCTTTCCAACCATCC 59.995 52.381 0.00 0.00 0.00 3.51
694 735 2.363683 CTGAGCCTCTTTCCAACCATC 58.636 52.381 0.00 0.00 0.00 3.51
695 736 1.005215 CCTGAGCCTCTTTCCAACCAT 59.995 52.381 0.00 0.00 0.00 3.55
696 737 0.401738 CCTGAGCCTCTTTCCAACCA 59.598 55.000 0.00 0.00 0.00 3.67
697 738 0.693049 TCCTGAGCCTCTTTCCAACC 59.307 55.000 0.00 0.00 0.00 3.77
698 739 1.349357 AGTCCTGAGCCTCTTTCCAAC 59.651 52.381 0.00 0.00 0.00 3.77
699 740 1.349026 CAGTCCTGAGCCTCTTTCCAA 59.651 52.381 0.00 0.00 0.00 3.53
700 741 0.979665 CAGTCCTGAGCCTCTTTCCA 59.020 55.000 0.00 0.00 0.00 3.53
701 742 1.270907 TCAGTCCTGAGCCTCTTTCC 58.729 55.000 0.00 0.00 34.14 3.13
711 752 0.041684 TCCAGCCATCTCAGTCCTGA 59.958 55.000 0.00 0.00 38.06 3.86
712 753 0.907486 TTCCAGCCATCTCAGTCCTG 59.093 55.000 0.00 0.00 0.00 3.86
713 754 1.661463 TTTCCAGCCATCTCAGTCCT 58.339 50.000 0.00 0.00 0.00 3.85
714 755 2.725221 ATTTCCAGCCATCTCAGTCC 57.275 50.000 0.00 0.00 0.00 3.85
715 756 3.873952 GTGTATTTCCAGCCATCTCAGTC 59.126 47.826 0.00 0.00 0.00 3.51
716 757 3.521126 AGTGTATTTCCAGCCATCTCAGT 59.479 43.478 0.00 0.00 0.00 3.41
761 802 7.475840 GGTCAAATCACTATTCCATGAGAAAC 58.524 38.462 0.00 0.00 38.21 2.78
766 807 4.080582 ACCGGTCAAATCACTATTCCATGA 60.081 41.667 0.00 0.00 0.00 3.07
895 936 0.953960 GTTGTTTCGCGGTGGGATCT 60.954 55.000 6.13 0.00 0.00 2.75
896 937 1.500396 GTTGTTTCGCGGTGGGATC 59.500 57.895 6.13 0.00 0.00 3.36
1112 1153 0.824109 TTCACTCCTCCATACAGCGG 59.176 55.000 0.00 0.00 0.00 5.52
1206 1247 2.312390 GGTGTAAAAGGCAACCTGGAA 58.688 47.619 0.00 0.00 32.13 3.53
1319 1367 6.839124 ATCTCAAGCACAAACCATGAATTA 57.161 33.333 0.00 0.00 0.00 1.40
1345 1393 7.226441 TGTATATACTCGGCTAGGAAGTTGTA 58.774 38.462 13.89 0.00 0.00 2.41
1356 1404 7.769044 ACATTGAAAACTTGTATATACTCGGCT 59.231 33.333 13.89 0.00 0.00 5.52
1413 1720 7.962918 AGAATTTTACGCTTTAGCACACTAATG 59.037 33.333 2.29 0.00 42.21 1.90
1431 1738 7.994425 TCTACCAGTTTGATGCAGAATTTTA 57.006 32.000 0.00 0.00 0.00 1.52
1464 1771 9.696572 AGATAAGTCATTCACTGTAGGTAAGTA 57.303 33.333 0.00 0.00 34.56 2.24
1465 1772 8.596781 AGATAAGTCATTCACTGTAGGTAAGT 57.403 34.615 0.00 0.00 34.56 2.24
1466 1773 8.908903 AGAGATAAGTCATTCACTGTAGGTAAG 58.091 37.037 0.00 0.00 34.56 2.34
1467 1774 8.824756 AGAGATAAGTCATTCACTGTAGGTAA 57.175 34.615 0.00 0.00 34.56 2.85
1468 1775 8.824756 AAGAGATAAGTCATTCACTGTAGGTA 57.175 34.615 0.00 0.00 34.56 3.08
1469 1776 7.726033 AAGAGATAAGTCATTCACTGTAGGT 57.274 36.000 0.00 0.00 34.56 3.08
1470 1777 9.689976 CATAAGAGATAAGTCATTCACTGTAGG 57.310 37.037 0.00 0.00 34.56 3.18
1474 1781 9.469807 GGTACATAAGAGATAAGTCATTCACTG 57.530 37.037 0.00 0.00 34.56 3.66
1475 1782 8.643324 GGGTACATAAGAGATAAGTCATTCACT 58.357 37.037 0.00 0.00 36.64 3.41
1476 1783 8.421784 TGGGTACATAAGAGATAAGTCATTCAC 58.578 37.037 0.00 0.00 0.00 3.18
1477 1784 8.547481 TGGGTACATAAGAGATAAGTCATTCA 57.453 34.615 0.00 0.00 0.00 2.57
1478 1785 9.832445 TTTGGGTACATAAGAGATAAGTCATTC 57.168 33.333 0.00 0.00 0.00 2.67
1547 1886 8.290325 GTCCCAAAATAAGTGTCTTGACTTTAG 58.710 37.037 2.35 0.00 37.38 1.85
1551 1890 4.755123 CGTCCCAAAATAAGTGTCTTGACT 59.245 41.667 2.35 0.00 0.00 3.41
1775 2304 2.229784 CAGGCACCTCTTCCATCAAAAC 59.770 50.000 0.00 0.00 0.00 2.43
1831 2360 5.264395 ACAAGTATTTTTGGATGGAGGGAG 58.736 41.667 0.00 0.00 32.32 4.30
1832 2361 5.261216 GACAAGTATTTTTGGATGGAGGGA 58.739 41.667 0.00 0.00 32.32 4.20
1833 2362 4.096382 CGACAAGTATTTTTGGATGGAGGG 59.904 45.833 0.00 0.00 32.32 4.30
1834 2363 4.096382 CCGACAAGTATTTTTGGATGGAGG 59.904 45.833 0.00 0.00 32.32 4.30
1835 2364 4.941263 TCCGACAAGTATTTTTGGATGGAG 59.059 41.667 0.00 0.00 32.32 3.86
1836 2365 4.912586 TCCGACAAGTATTTTTGGATGGA 58.087 39.130 0.00 0.00 32.32 3.41
1837 2366 4.941263 TCTCCGACAAGTATTTTTGGATGG 59.059 41.667 0.00 0.00 32.32 3.51
1838 2367 6.494893 TTCTCCGACAAGTATTTTTGGATG 57.505 37.500 0.00 0.00 32.32 3.51
1839 2368 7.703058 ATTTCTCCGACAAGTATTTTTGGAT 57.297 32.000 0.00 0.00 32.32 3.41
1840 2369 7.229707 TCAATTTCTCCGACAAGTATTTTTGGA 59.770 33.333 0.00 0.00 32.32 3.53
1841 2370 7.367285 TCAATTTCTCCGACAAGTATTTTTGG 58.633 34.615 0.00 0.00 32.32 3.28
1842 2371 8.970691 ATCAATTTCTCCGACAAGTATTTTTG 57.029 30.769 0.00 0.00 0.00 2.44
1844 2373 9.667107 TCTATCAATTTCTCCGACAAGTATTTT 57.333 29.630 0.00 0.00 0.00 1.82
1845 2374 9.667107 TTCTATCAATTTCTCCGACAAGTATTT 57.333 29.630 0.00 0.00 0.00 1.40
1846 2375 9.667107 TTTCTATCAATTTCTCCGACAAGTATT 57.333 29.630 0.00 0.00 0.00 1.89
1847 2376 9.838339 ATTTCTATCAATTTCTCCGACAAGTAT 57.162 29.630 0.00 0.00 0.00 2.12
1848 2377 9.098355 CATTTCTATCAATTTCTCCGACAAGTA 57.902 33.333 0.00 0.00 0.00 2.24
1849 2378 7.066284 CCATTTCTATCAATTTCTCCGACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
1850 2379 7.280876 TCCATTTCTATCAATTTCTCCGACAAG 59.719 37.037 0.00 0.00 0.00 3.16
1851 2380 7.109501 TCCATTTCTATCAATTTCTCCGACAA 58.890 34.615 0.00 0.00 0.00 3.18
1852 2381 6.649155 TCCATTTCTATCAATTTCTCCGACA 58.351 36.000 0.00 0.00 0.00 4.35
1853 2382 7.227512 ACATCCATTTCTATCAATTTCTCCGAC 59.772 37.037 0.00 0.00 0.00 4.79
1854 2383 7.282585 ACATCCATTTCTATCAATTTCTCCGA 58.717 34.615 0.00 0.00 0.00 4.55
1855 2384 7.502120 ACATCCATTTCTATCAATTTCTCCG 57.498 36.000 0.00 0.00 0.00 4.63
1893 2422 8.744652 CGGAGAAATGGATGTATCTAGACTTAT 58.255 37.037 0.00 0.00 0.00 1.73
1894 2423 7.942894 TCGGAGAAATGGATGTATCTAGACTTA 59.057 37.037 0.00 0.00 0.00 2.24
1895 2424 6.778069 TCGGAGAAATGGATGTATCTAGACTT 59.222 38.462 0.00 0.00 0.00 3.01
1896 2425 6.207810 GTCGGAGAAATGGATGTATCTAGACT 59.792 42.308 0.00 0.00 39.69 3.24
1897 2426 6.383415 GTCGGAGAAATGGATGTATCTAGAC 58.617 44.000 0.00 0.00 39.69 2.59
1898 2427 5.181433 CGTCGGAGAAATGGATGTATCTAGA 59.819 44.000 0.00 0.00 39.69 2.43
1899 2428 5.181433 TCGTCGGAGAAATGGATGTATCTAG 59.819 44.000 0.00 0.00 39.69 2.43
1900 2429 5.067954 TCGTCGGAGAAATGGATGTATCTA 58.932 41.667 0.00 0.00 39.69 1.98
1901 2430 3.889538 TCGTCGGAGAAATGGATGTATCT 59.110 43.478 0.00 0.00 39.69 1.98
1902 2431 4.230657 CTCGTCGGAGAAATGGATGTATC 58.769 47.826 0.00 0.00 43.27 2.24
1903 2432 3.637229 ACTCGTCGGAGAAATGGATGTAT 59.363 43.478 0.00 0.00 43.27 2.29
1904 2433 3.021695 ACTCGTCGGAGAAATGGATGTA 58.978 45.455 0.00 0.00 43.27 2.29
1905 2434 1.825474 ACTCGTCGGAGAAATGGATGT 59.175 47.619 0.00 0.00 43.27 3.06
1906 2435 2.586258 ACTCGTCGGAGAAATGGATG 57.414 50.000 0.00 0.00 43.27 3.51
1907 2436 4.939052 AATACTCGTCGGAGAAATGGAT 57.061 40.909 0.00 0.00 43.27 3.41
1908 2437 4.441079 GGAAATACTCGTCGGAGAAATGGA 60.441 45.833 0.00 0.00 43.27 3.41
1909 2438 3.802685 GGAAATACTCGTCGGAGAAATGG 59.197 47.826 0.00 0.00 43.27 3.16
1910 2439 3.486108 CGGAAATACTCGTCGGAGAAATG 59.514 47.826 0.00 0.00 43.27 2.32
1911 2440 3.490419 CCGGAAATACTCGTCGGAGAAAT 60.490 47.826 0.00 0.00 43.27 2.17
1912 2441 2.159338 CCGGAAATACTCGTCGGAGAAA 60.159 50.000 0.00 0.00 43.27 2.52
1913 2442 1.402968 CCGGAAATACTCGTCGGAGAA 59.597 52.381 0.00 0.00 43.27 2.87
1914 2443 1.019673 CCGGAAATACTCGTCGGAGA 58.980 55.000 0.00 0.00 43.27 3.71
1915 2444 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
1916 2445 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
1917 2446 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
1918 2447 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
1919 2448 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
1920 2449 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
1921 2450 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
1922 2451 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
1923 2452 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1924 2453 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1925 2454 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1926 2455 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1927 2456 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
1928 2457 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
1929 2458 0.032813 AATTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1930 2459 1.696063 TAATTACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
1931 2460 2.428171 TGTTAATTACTCCCTCCGTCCG 59.572 50.000 0.00 0.00 0.00 4.79
1932 2461 3.740452 GCTGTTAATTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
1933 2462 3.455327 GCTGTTAATTACTCCCTCCGTC 58.545 50.000 0.00 0.00 0.00 4.79
1934 2463 2.159142 CGCTGTTAATTACTCCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
1935 2464 2.470821 CGCTGTTAATTACTCCCTCCG 58.529 52.381 0.00 0.00 0.00 4.63
1936 2465 2.210961 GCGCTGTTAATTACTCCCTCC 58.789 52.381 0.00 0.00 0.00 4.30
1937 2466 2.608090 GTGCGCTGTTAATTACTCCCTC 59.392 50.000 9.73 0.00 0.00 4.30
1938 2467 2.236395 AGTGCGCTGTTAATTACTCCCT 59.764 45.455 9.73 0.00 0.00 4.20
1939 2468 2.629051 AGTGCGCTGTTAATTACTCCC 58.371 47.619 9.73 0.00 0.00 4.30
1940 2469 4.260253 GCTAAGTGCGCTGTTAATTACTCC 60.260 45.833 9.73 0.00 0.00 3.85
1941 2470 4.823204 GCTAAGTGCGCTGTTAATTACTC 58.177 43.478 9.73 0.00 0.00 2.59
1942 2471 4.859629 GCTAAGTGCGCTGTTAATTACT 57.140 40.909 9.73 0.00 0.00 2.24
1976 2505 3.406764 GTCTGACCTGAGAACATTGCTT 58.593 45.455 0.00 0.00 0.00 3.91
1979 2508 2.989840 GTCGTCTGACCTGAGAACATTG 59.010 50.000 1.55 0.00 39.30 2.82
2117 2647 4.582656 TGCCCATAAAATAATTCAGGGTCG 59.417 41.667 0.00 0.00 37.16 4.79
2309 2839 6.544928 AGAGGACAAGGAACAACAAATTTT 57.455 33.333 0.00 0.00 0.00 1.82
2322 2852 4.998033 GTCTCTGGTTTTAAGAGGACAAGG 59.002 45.833 0.90 0.00 41.33 3.61
2462 2992 7.390718 TCTTTAAATCACCTTAACTGAAGAGGC 59.609 37.037 0.00 0.00 37.33 4.70
2503 3033 3.366052 AAACACCGCTGGATAATCCTT 57.634 42.857 1.50 0.00 37.46 3.36
2554 3085 5.328565 TGGGATCTACCTGACTGATAGATG 58.671 45.833 1.10 0.00 36.11 2.90
2555 3086 5.607168 TGGGATCTACCTGACTGATAGAT 57.393 43.478 0.00 0.00 38.17 1.98
2558 3089 6.249192 CACTATGGGATCTACCTGACTGATA 58.751 44.000 0.00 0.00 38.98 2.15
2949 3480 5.003160 TCTTCCAGAAAGCATCAAATCGAA 58.997 37.500 0.00 0.00 34.76 3.71
2999 3530 4.458397 AGATTGGGTGCTCAAGTATGATG 58.542 43.478 0.00 0.00 34.37 3.07
3018 3549 5.635280 CCGACACGCATGAATTAAGATAGAT 59.365 40.000 0.00 0.00 0.00 1.98
3036 3567 1.156736 CACCTGGAAATCACCGACAC 58.843 55.000 0.00 0.00 0.00 3.67
3127 3658 3.306364 CCCGTCAAATTGCCCAACATTAA 60.306 43.478 0.00 0.00 0.00 1.40
3148 3679 1.750193 TAGCATAACAAGCAGGCACC 58.250 50.000 0.00 0.00 0.00 5.01
3265 3796 9.777297 TTCGGTATTTGATCTGATCATCATTAA 57.223 29.630 20.16 11.81 39.39 1.40
3288 3819 6.022329 GCAAAGAACAACAAAGCAATTTTTCG 60.022 34.615 0.00 0.00 0.00 3.46
3478 4015 9.988815 TTTGCTAGAAAACCATGCTTTATTTTA 57.011 25.926 0.00 0.00 0.00 1.52
3574 4115 8.425577 ACTCCAAAATCAATCGATAGTTACTG 57.574 34.615 0.00 0.00 37.40 2.74
3575 4116 9.751542 CTACTCCAAAATCAATCGATAGTTACT 57.248 33.333 0.00 0.00 37.40 2.24
3585 4126 8.329203 AGTCAAAGTCTACTCCAAAATCAATC 57.671 34.615 0.00 0.00 0.00 2.67
3589 4130 8.286097 CAGAAAGTCAAAGTCTACTCCAAAATC 58.714 37.037 0.00 0.00 0.00 2.17
3590 4131 7.993183 TCAGAAAGTCAAAGTCTACTCCAAAAT 59.007 33.333 0.00 0.00 0.00 1.82
3591 4132 7.280205 GTCAGAAAGTCAAAGTCTACTCCAAAA 59.720 37.037 0.00 0.00 0.00 2.44
3592 4133 6.761714 GTCAGAAAGTCAAAGTCTACTCCAAA 59.238 38.462 0.00 0.00 0.00 3.28
3611 4152 2.684001 AAGACACGTTGTGGTCAGAA 57.316 45.000 6.54 0.00 37.94 3.02
3618 4159 2.058798 ACGATGCTAAGACACGTTGTG 58.941 47.619 0.00 0.00 39.75 3.33
3669 4211 1.067212 GTCGGTTAGATCATGCTCCGT 59.933 52.381 0.00 0.00 39.14 4.69
3675 4217 4.421058 TGTTCTTCGTCGGTTAGATCATG 58.579 43.478 0.00 0.00 0.00 3.07
3682 4224 6.292811 GGTTATTGTTTGTTCTTCGTCGGTTA 60.293 38.462 0.00 0.00 0.00 2.85
3684 4226 4.024641 GGTTATTGTTTGTTCTTCGTCGGT 60.025 41.667 0.00 0.00 0.00 4.69
3686 4228 5.085636 TGGTTATTGTTTGTTCTTCGTCG 57.914 39.130 0.00 0.00 0.00 5.12
3687 4229 6.577427 GTGATGGTTATTGTTTGTTCTTCGTC 59.423 38.462 0.00 0.00 0.00 4.20
3689 4231 6.668323 AGTGATGGTTATTGTTTGTTCTTCG 58.332 36.000 0.00 0.00 0.00 3.79
3707 4249 9.046296 GGATGGATGTAGTAAAAGTTAGTGATG 57.954 37.037 0.00 0.00 0.00 3.07
3788 4330 8.146412 GGATGGAGGTAGTAATAACGTATTGTT 58.854 37.037 0.00 0.00 44.78 2.83
3789 4331 7.508296 AGGATGGAGGTAGTAATAACGTATTGT 59.492 37.037 0.00 0.00 0.00 2.71
3790 4332 7.893658 AGGATGGAGGTAGTAATAACGTATTG 58.106 38.462 0.00 0.00 0.00 1.90
3791 4333 8.365647 CAAGGATGGAGGTAGTAATAACGTATT 58.634 37.037 0.00 0.00 0.00 1.89
3792 4334 7.508296 ACAAGGATGGAGGTAGTAATAACGTAT 59.492 37.037 0.00 0.00 0.00 3.06
3793 4335 6.835488 ACAAGGATGGAGGTAGTAATAACGTA 59.165 38.462 0.00 0.00 0.00 3.57
3794 4336 5.659971 ACAAGGATGGAGGTAGTAATAACGT 59.340 40.000 0.00 0.00 0.00 3.99
3795 4337 6.158023 ACAAGGATGGAGGTAGTAATAACG 57.842 41.667 0.00 0.00 0.00 3.18
3796 4338 7.827729 ACAAACAAGGATGGAGGTAGTAATAAC 59.172 37.037 0.00 0.00 0.00 1.89
3797 4339 7.924541 ACAAACAAGGATGGAGGTAGTAATAA 58.075 34.615 0.00 0.00 0.00 1.40
3798 4340 7.504926 ACAAACAAGGATGGAGGTAGTAATA 57.495 36.000 0.00 0.00 0.00 0.98
3799 4341 6.388619 ACAAACAAGGATGGAGGTAGTAAT 57.611 37.500 0.00 0.00 0.00 1.89
3800 4342 5.836024 ACAAACAAGGATGGAGGTAGTAA 57.164 39.130 0.00 0.00 0.00 2.24
3801 4343 5.514136 CCAACAAACAAGGATGGAGGTAGTA 60.514 44.000 0.00 0.00 32.82 1.82
3802 4344 4.398319 CAACAAACAAGGATGGAGGTAGT 58.602 43.478 0.00 0.00 0.00 2.73
3803 4345 3.758554 CCAACAAACAAGGATGGAGGTAG 59.241 47.826 0.00 0.00 32.82 3.18
3804 4346 3.139397 ACCAACAAACAAGGATGGAGGTA 59.861 43.478 0.00 0.00 35.16 3.08
3805 4347 2.091333 ACCAACAAACAAGGATGGAGGT 60.091 45.455 0.00 0.00 35.16 3.85
3806 4348 2.558359 GACCAACAAACAAGGATGGAGG 59.442 50.000 0.00 0.00 35.16 4.30
3807 4349 3.490348 AGACCAACAAACAAGGATGGAG 58.510 45.455 0.00 0.00 35.16 3.86
3808 4350 3.593442 AGACCAACAAACAAGGATGGA 57.407 42.857 0.00 0.00 35.16 3.41
3809 4351 3.891366 AGAAGACCAACAAACAAGGATGG 59.109 43.478 0.00 0.00 37.19 3.51
3810 4352 5.520376 AAGAAGACCAACAAACAAGGATG 57.480 39.130 0.00 0.00 0.00 3.51
3811 4353 7.839680 ATAAAGAAGACCAACAAACAAGGAT 57.160 32.000 0.00 0.00 0.00 3.24
3812 4354 8.754991 TTATAAAGAAGACCAACAAACAAGGA 57.245 30.769 0.00 0.00 0.00 3.36
3813 4355 9.981114 AATTATAAAGAAGACCAACAAACAAGG 57.019 29.630 0.00 0.00 0.00 3.61
3819 4361 9.959749 GACACAAATTATAAAGAAGACCAACAA 57.040 29.630 0.00 0.00 0.00 2.83
3820 4362 9.126151 TGACACAAATTATAAAGAAGACCAACA 57.874 29.630 0.00 0.00 0.00 3.33
3821 4363 9.959749 TTGACACAAATTATAAAGAAGACCAAC 57.040 29.630 0.00 0.00 0.00 3.77
3863 4405 9.976255 GACATGCATTAACGTATTGTTAGTTAA 57.024 29.630 0.00 3.06 43.63 2.01
3864 4406 9.152595 TGACATGCATTAACGTATTGTTAGTTA 57.847 29.630 0.00 0.00 43.63 2.24
3865 4407 8.035165 TGACATGCATTAACGTATTGTTAGTT 57.965 30.769 0.00 0.00 43.63 2.24
3866 4408 7.603963 TGACATGCATTAACGTATTGTTAGT 57.396 32.000 0.00 0.00 43.63 2.24
3977 4519 7.492344 CCTATGCCAAATTTTGACCATAAGTTC 59.508 37.037 10.72 0.00 30.22 3.01
3997 4539 1.616994 GGCCCCCATTGTATCCTATGC 60.617 57.143 0.00 0.00 0.00 3.14
4001 4543 1.244366 ATTGGCCCCCATTGTATCCT 58.756 50.000 0.00 0.00 31.53 3.24
4003 4545 3.323691 GGTTTATTGGCCCCCATTGTATC 59.676 47.826 0.00 0.00 31.53 2.24
4012 4554 1.931635 TGTCTTGGTTTATTGGCCCC 58.068 50.000 0.00 0.00 0.00 5.80
4015 4557 4.600692 ACCTTTGTCTTGGTTTATTGGC 57.399 40.909 0.00 0.00 31.62 4.52
4017 4559 9.063615 AGTTACTACCTTTGTCTTGGTTTATTG 57.936 33.333 0.00 0.00 37.74 1.90
4027 4569 8.886719 GTGTTTTGTTAGTTACTACCTTTGTCT 58.113 33.333 0.00 0.00 0.00 3.41
4032 4574 9.452287 TCTTTGTGTTTTGTTAGTTACTACCTT 57.548 29.630 0.00 0.00 0.00 3.50
4033 4575 9.452287 TTCTTTGTGTTTTGTTAGTTACTACCT 57.548 29.630 0.00 0.00 0.00 3.08
4082 4624 9.512588 AGTTGATCAATCTCATAGTGTTTTCTT 57.487 29.630 12.12 0.00 0.00 2.52
4083 4625 9.512588 AAGTTGATCAATCTCATAGTGTTTTCT 57.487 29.630 12.12 0.00 0.00 2.52
4084 4626 9.552114 CAAGTTGATCAATCTCATAGTGTTTTC 57.448 33.333 12.12 0.00 0.00 2.29
4085 4627 9.071276 ACAAGTTGATCAATCTCATAGTGTTTT 57.929 29.630 12.12 0.00 0.00 2.43
4086 4628 8.627208 ACAAGTTGATCAATCTCATAGTGTTT 57.373 30.769 12.12 0.00 0.00 2.83
4087 4629 9.896645 ATACAAGTTGATCAATCTCATAGTGTT 57.103 29.630 12.12 1.97 0.00 3.32
4094 4636 9.591792 CAGTCTTATACAAGTTGATCAATCTCA 57.408 33.333 12.12 0.00 33.20 3.27
4095 4637 9.809096 TCAGTCTTATACAAGTTGATCAATCTC 57.191 33.333 12.12 0.00 33.20 2.75
4096 4638 9.814899 CTCAGTCTTATACAAGTTGATCAATCT 57.185 33.333 12.12 7.97 33.20 2.40
4097 4639 9.809096 TCTCAGTCTTATACAAGTTGATCAATC 57.191 33.333 12.12 5.72 33.20 2.67
4098 4640 9.814899 CTCTCAGTCTTATACAAGTTGATCAAT 57.185 33.333 12.12 0.00 33.20 2.57
4099 4641 8.253810 CCTCTCAGTCTTATACAAGTTGATCAA 58.746 37.037 10.54 3.38 33.20 2.57
4100 4642 7.397476 ACCTCTCAGTCTTATACAAGTTGATCA 59.603 37.037 10.54 0.00 33.20 2.92
4101 4643 7.704472 CACCTCTCAGTCTTATACAAGTTGATC 59.296 40.741 10.54 0.00 33.20 2.92
4102 4644 7.364232 CCACCTCTCAGTCTTATACAAGTTGAT 60.364 40.741 10.54 1.64 33.20 2.57
4103 4645 6.071334 CCACCTCTCAGTCTTATACAAGTTGA 60.071 42.308 10.54 0.00 33.20 3.18
4104 4646 6.102663 CCACCTCTCAGTCTTATACAAGTTG 58.897 44.000 0.00 0.00 33.20 3.16
4105 4647 5.337652 GCCACCTCTCAGTCTTATACAAGTT 60.338 44.000 0.00 0.00 33.20 2.66
4106 4648 4.160626 GCCACCTCTCAGTCTTATACAAGT 59.839 45.833 0.00 0.00 33.20 3.16
4107 4649 4.688021 GCCACCTCTCAGTCTTATACAAG 58.312 47.826 0.00 0.00 0.00 3.16
4108 4650 3.130516 CGCCACCTCTCAGTCTTATACAA 59.869 47.826 0.00 0.00 0.00 2.41
4109 4651 2.688446 CGCCACCTCTCAGTCTTATACA 59.312 50.000 0.00 0.00 0.00 2.29
4110 4652 3.357166 CGCCACCTCTCAGTCTTATAC 57.643 52.381 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.