Multiple sequence alignment - TraesCS6B01G218100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G218100 chr6B 100.000 9019 0 0 1 9019 300725045 300716027 0.000000e+00 16656.0
1 TraesCS6B01G218100 chr6B 93.113 726 46 2 8298 9019 440919572 440918847 0.000000e+00 1061.0
2 TraesCS6B01G218100 chr6B 92.926 721 47 2 8303 9019 332514175 332514895 0.000000e+00 1046.0
3 TraesCS6B01G218100 chr6B 92.562 726 50 2 8298 9019 546433280 546434005 0.000000e+00 1038.0
4 TraesCS6B01G218100 chr6B 86.611 239 22 8 6095 6324 675432904 675432667 1.160000e-63 255.0
5 TraesCS6B01G218100 chr6D 96.150 4338 98 29 852 5169 161971759 161976047 0.000000e+00 7022.0
6 TraesCS6B01G218100 chr6D 97.602 1376 23 4 6646 8013 161977514 161978887 0.000000e+00 2350.0
7 TraesCS6B01G218100 chr6D 94.525 1169 35 9 5503 6650 161976321 161977481 0.000000e+00 1777.0
8 TraesCS6B01G218100 chr6D 90.893 549 45 4 277 824 161971128 161971672 0.000000e+00 732.0
9 TraesCS6B01G218100 chr6D 97.156 211 6 0 5168 5378 161976079 161976289 3.100000e-94 357.0
10 TraesCS6B01G218100 chr6D 93.478 230 14 1 57 285 161965003 161965232 3.120000e-89 340.0
11 TraesCS6B01G218100 chr6D 95.395 152 6 1 8011 8161 161978968 161979119 3.250000e-59 241.0
12 TraesCS6B01G218100 chr6D 94.444 126 5 2 5381 5505 4235808 4235932 9.240000e-45 193.0
13 TraesCS6B01G218100 chr6D 98.824 85 1 0 8190 8274 161979634 161979718 1.570000e-32 152.0
14 TraesCS6B01G218100 chr6A 97.645 3185 54 7 1995 5169 221343634 221346807 0.000000e+00 5446.0
15 TraesCS6B01G218100 chr6A 97.219 1546 29 10 6646 8189 221350542 221352075 0.000000e+00 2604.0
16 TraesCS6B01G218100 chr6A 96.525 1151 36 2 5503 6650 221347059 221348208 0.000000e+00 1901.0
17 TraesCS6B01G218100 chr6A 97.376 1029 22 4 858 1885 221342125 221343149 0.000000e+00 1746.0
18 TraesCS6B01G218100 chr6A 86.704 534 58 5 4644 5169 35995777 35995249 1.690000e-161 580.0
19 TraesCS6B01G218100 chr6A 97.309 223 6 0 5168 5390 221346839 221347061 6.610000e-101 379.0
20 TraesCS6B01G218100 chr6A 91.732 254 15 6 5503 5753 35995027 35994777 1.860000e-91 348.0
21 TraesCS6B01G218100 chr6A 84.548 343 51 2 5968 6310 35994646 35994306 1.120000e-88 339.0
22 TraesCS6B01G218100 chr6A 90.476 252 22 2 4397 4648 36004743 36004494 1.880000e-86 331.0
23 TraesCS6B01G218100 chr6A 97.647 85 2 0 8190 8274 221352125 221352209 7.300000e-31 147.0
24 TraesCS6B01G218100 chrUn 96.880 2308 48 11 852 3144 212097073 212094775 0.000000e+00 3842.0
25 TraesCS6B01G218100 chrUn 93.293 164 11 0 6735 6898 287775377 287775214 9.050000e-60 243.0
26 TraesCS6B01G218100 chr5A 88.510 1027 84 16 4389 5390 370172172 370171155 0.000000e+00 1212.0
27 TraesCS6B01G218100 chr5A 89.392 773 75 5 4400 5169 282625542 282626310 0.000000e+00 966.0
28 TraesCS6B01G218100 chr5A 88.679 424 21 12 5503 5921 370171157 370170756 8.140000e-135 492.0
29 TraesCS6B01G218100 chr5A 88.592 412 20 12 5503 5909 282626561 282626950 8.190000e-130 475.0
30 TraesCS6B01G218100 chr5A 84.186 430 49 8 5887 6315 282626976 282627387 5.070000e-107 399.0
31 TraesCS6B01G218100 chr5A 84.000 400 46 5 5916 6315 370170712 370170331 1.430000e-97 368.0
32 TraesCS6B01G218100 chr5A 93.274 223 14 1 5168 5390 282626342 282626563 2.430000e-85 327.0
33 TraesCS6B01G218100 chr2B 87.524 1034 84 18 4386 5390 633582539 633583556 0.000000e+00 1153.0
34 TraesCS6B01G218100 chr2B 93.388 726 44 2 8298 9019 253615712 253614987 0.000000e+00 1072.0
35 TraesCS6B01G218100 chr2B 92.562 726 50 2 8298 9019 409108080 409107355 0.000000e+00 1038.0
36 TraesCS6B01G218100 chr2B 89.320 412 17 12 5503 5909 633583554 633583943 8.140000e-135 492.0
37 TraesCS6B01G218100 chr2B 83.133 415 52 5 5901 6315 633583984 633584380 6.660000e-96 363.0
38 TraesCS6B01G218100 chr2B 89.881 168 14 1 6735 6902 109954976 109955140 7.090000e-51 213.0
39 TraesCS6B01G218100 chr2B 94.488 127 6 1 5381 5506 248147230 248147356 2.570000e-45 195.0
40 TraesCS6B01G218100 chr2B 93.600 125 7 1 5382 5505 133018411 133018535 1.550000e-42 185.0
41 TraesCS6B01G218100 chr2B 89.655 87 5 2 6895 6978 109955505 109955590 3.440000e-19 108.0
42 TraesCS6B01G218100 chr2B 97.297 37 1 0 6942 6978 110044984 110044948 7.560000e-06 63.9
43 TraesCS6B01G218100 chr2B 100.000 29 0 0 32 60 171452003 171452031 5.000000e-03 54.7
44 TraesCS6B01G218100 chr1B 92.975 726 47 2 8298 9019 186917925 186918650 0.000000e+00 1055.0
45 TraesCS6B01G218100 chr4B 92.837 726 48 2 8298 9019 191577996 191577271 0.000000e+00 1050.0
46 TraesCS6B01G218100 chr4B 92.700 726 49 2 8298 9019 428044111 428043386 0.000000e+00 1044.0
47 TraesCS6B01G218100 chr7B 92.690 725 45 5 8298 9016 342587203 342587925 0.000000e+00 1038.0
48 TraesCS6B01G218100 chr7B 89.855 207 21 0 3128 3334 487813067 487812861 5.370000e-67 267.0
49 TraesCS6B01G218100 chr7B 90.152 132 13 0 2842 2973 487813339 487813208 1.200000e-38 172.0
50 TraesCS6B01G218100 chr7B 88.112 143 17 0 4147 4289 487812468 487812326 4.330000e-38 171.0
51 TraesCS6B01G218100 chr7B 93.333 105 7 0 2200 2304 487813995 487813891 1.210000e-33 156.0
52 TraesCS6B01G218100 chr5D 86.224 784 87 14 4389 5169 137061249 137060484 0.000000e+00 830.0
53 TraesCS6B01G218100 chr5D 92.667 300 17 4 5503 5800 137060252 137059956 2.330000e-115 427.0
54 TraesCS6B01G218100 chr5D 81.273 267 35 6 5811 6064 137059916 137059652 1.540000e-47 202.0
55 TraesCS6B01G218100 chr1D 89.780 499 48 3 4390 4888 436109181 436108686 3.550000e-178 636.0
56 TraesCS6B01G218100 chr1D 91.489 47 4 0 4887 4933 436108384 436108338 2.100000e-06 65.8
57 TraesCS6B01G218100 chr4A 87.284 464 51 7 4391 4852 513604624 513604167 2.890000e-144 523.0
58 TraesCS6B01G218100 chr4A 90.492 305 16 6 5505 5798 596924044 596924346 3.050000e-104 390.0
59 TraesCS6B01G218100 chr4A 90.909 253 17 5 5503 5752 513558465 513558216 1.450000e-87 335.0
60 TraesCS6B01G218100 chr4A 83.102 361 54 7 5956 6314 513558096 513557741 1.130000e-83 322.0
61 TraesCS6B01G218100 chr4A 90.909 231 12 4 5168 5390 567654656 567654885 1.470000e-77 302.0
62 TraesCS6B01G218100 chr4A 92.353 170 9 2 5000 5169 567654459 567654624 1.170000e-58 239.0
63 TraesCS6B01G218100 chr4A 91.667 168 14 0 4799 4966 567654298 567654465 5.440000e-57 233.0
64 TraesCS6B01G218100 chr4A 87.931 174 14 2 5168 5335 513558672 513558500 1.990000e-46 198.0
65 TraesCS6B01G218100 chr2A 88.631 431 39 5 4390 4813 155747626 155747199 4.830000e-142 516.0
66 TraesCS6B01G218100 chr2A 86.150 361 48 2 5956 6316 155746964 155746606 1.100000e-103 388.0
67 TraesCS6B01G218100 chr2A 93.750 144 9 0 6735 6878 71437526 71437383 5.480000e-52 217.0
68 TraesCS6B01G218100 chr2A 95.763 118 4 1 5389 5505 729162120 729162003 1.200000e-43 189.0
69 TraesCS6B01G218100 chr2A 84.615 143 21 1 4147 4289 753810872 753811013 3.400000e-29 141.0
70 TraesCS6B01G218100 chr2A 91.250 80 2 3 6894 6970 71436761 71436684 4.450000e-18 104.0
71 TraesCS6B01G218100 chr2D 93.529 170 9 1 6735 6902 72773132 72772963 1.500000e-62 252.0
72 TraesCS6B01G218100 chr2D 95.082 122 5 1 5389 5509 599946230 599946109 3.320000e-44 191.0
73 TraesCS6B01G218100 chr2D 93.750 80 0 3 6894 6970 72772780 72772703 2.060000e-21 115.0
74 TraesCS6B01G218100 chr2D 87.209 86 7 3 6896 6978 72595975 72595891 2.680000e-15 95.3
75 TraesCS6B01G218100 chr7A 96.610 118 3 1 5389 5505 721098233 721098350 2.570000e-45 195.0
76 TraesCS6B01G218100 chr7A 87.413 143 18 0 4147 4289 536518492 536518350 2.010000e-36 165.0
77 TraesCS6B01G218100 chr7A 87.121 132 17 0 2842 2973 536519364 536519233 5.640000e-32 150.0
78 TraesCS6B01G218100 chr4D 95.833 120 4 1 5388 5506 55352440 55352559 9.240000e-45 193.0
79 TraesCS6B01G218100 chr4D 93.651 126 6 2 5385 5509 367720663 367720539 4.300000e-43 187.0
80 TraesCS6B01G218100 chr7D 95.726 117 3 2 5191 5307 200786042 200785928 4.300000e-43 187.0
81 TraesCS6B01G218100 chr7D 86.709 158 21 0 4132 4289 463880511 463880668 9.310000e-40 176.0
82 TraesCS6B01G218100 chr7D 89.922 129 13 0 2839 2967 463879652 463879780 5.600000e-37 167.0
83 TraesCS6B01G218100 chr1A 93.651 126 7 1 5382 5506 208212526 208212651 4.300000e-43 187.0
84 TraesCS6B01G218100 chr5B 87.313 134 16 1 5168 5301 186380458 186380326 1.570000e-32 152.0
85 TraesCS6B01G218100 chr5B 96.875 64 2 0 5327 5390 186149872 186149809 3.440000e-19 108.0
86 TraesCS6B01G218100 chr5B 93.750 48 3 0 13 60 18706802 18706849 1.260000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G218100 chr6B 300716027 300725045 9018 True 16656.000000 16656 100.000000 1 9019 1 chr6B.!!$R1 9018
1 TraesCS6B01G218100 chr6B 440918847 440919572 725 True 1061.000000 1061 93.113000 8298 9019 1 chr6B.!!$R2 721
2 TraesCS6B01G218100 chr6B 332514175 332514895 720 False 1046.000000 1046 92.926000 8303 9019 1 chr6B.!!$F1 716
3 TraesCS6B01G218100 chr6B 546433280 546434005 725 False 1038.000000 1038 92.562000 8298 9019 1 chr6B.!!$F2 721
4 TraesCS6B01G218100 chr6D 161971128 161979718 8590 False 1804.428571 7022 95.792143 277 8274 7 chr6D.!!$F3 7997
5 TraesCS6B01G218100 chr6A 221342125 221352209 10084 False 2037.166667 5446 97.286833 858 8274 6 chr6A.!!$F1 7416
6 TraesCS6B01G218100 chr6A 35994306 35995777 1471 True 422.333333 580 87.661333 4644 6310 3 chr6A.!!$R2 1666
7 TraesCS6B01G218100 chrUn 212094775 212097073 2298 True 3842.000000 3842 96.880000 852 3144 1 chrUn.!!$R1 2292
8 TraesCS6B01G218100 chr5A 370170331 370172172 1841 True 690.666667 1212 87.063000 4389 6315 3 chr5A.!!$R1 1926
9 TraesCS6B01G218100 chr5A 282625542 282627387 1845 False 541.750000 966 88.861000 4400 6315 4 chr5A.!!$F1 1915
10 TraesCS6B01G218100 chr2B 253614987 253615712 725 True 1072.000000 1072 93.388000 8298 9019 1 chr2B.!!$R2 721
11 TraesCS6B01G218100 chr2B 409107355 409108080 725 True 1038.000000 1038 92.562000 8298 9019 1 chr2B.!!$R3 721
12 TraesCS6B01G218100 chr2B 633582539 633584380 1841 False 669.333333 1153 86.659000 4386 6315 3 chr2B.!!$F5 1929
13 TraesCS6B01G218100 chr1B 186917925 186918650 725 False 1055.000000 1055 92.975000 8298 9019 1 chr1B.!!$F1 721
14 TraesCS6B01G218100 chr4B 191577271 191577996 725 True 1050.000000 1050 92.837000 8298 9019 1 chr4B.!!$R1 721
15 TraesCS6B01G218100 chr4B 428043386 428044111 725 True 1044.000000 1044 92.700000 8298 9019 1 chr4B.!!$R2 721
16 TraesCS6B01G218100 chr7B 342587203 342587925 722 False 1038.000000 1038 92.690000 8298 9016 1 chr7B.!!$F1 718
17 TraesCS6B01G218100 chr5D 137059652 137061249 1597 True 486.333333 830 86.721333 4389 6064 3 chr5D.!!$R1 1675
18 TraesCS6B01G218100 chr1D 436108338 436109181 843 True 350.900000 636 90.634500 4390 4933 2 chr1D.!!$R1 543
19 TraesCS6B01G218100 chr4A 513557741 513558672 931 True 285.000000 335 87.314000 5168 6314 3 chr4A.!!$R2 1146
20 TraesCS6B01G218100 chr4A 567654298 567654885 587 False 258.000000 302 91.643000 4799 5390 3 chr4A.!!$F2 591
21 TraesCS6B01G218100 chr2A 155746606 155747626 1020 True 452.000000 516 87.390500 4390 6316 2 chr2A.!!$R3 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.107831 CCGACCACCACCTTCTTGAA 59.892 55.000 0.00 0.0 0.00 2.69 F
237 238 0.179034 GATGCAACCCTCAGCCCTAG 60.179 60.000 0.00 0.0 0.00 3.02 F
433 434 0.375106 GTAAAGATGCTCCGCTGTGC 59.625 55.000 0.00 0.0 0.00 4.57 F
714 715 1.069765 CTGTAATGGCCGGAGCGAT 59.930 57.895 5.05 0.0 39.39 4.58 F
1827 1908 1.149101 TCCTGAGGTCCTTGCCTTTT 58.851 50.000 0.00 0.0 39.34 2.27 F
1929 2010 2.348666 CGGTGTTGCTTCCTATCTTTCG 59.651 50.000 0.00 0.0 0.00 3.46 F
3453 3913 2.744166 GCACTGAGCTGCATCCTTCATA 60.744 50.000 1.02 0.0 41.15 2.15 F
4842 5357 0.997363 TCCTCACCTCTACCCTTCGA 59.003 55.000 0.00 0.0 0.00 3.71 F
5404 6308 0.033796 ACGTACTCCCTCCATCCGAA 60.034 55.000 0.00 0.0 0.00 4.30 F
6133 7258 0.040603 CGCTACGGGATAGGAACGAC 60.041 60.000 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1060 1140 1.657751 GCTGGGATTTGAGCGGGTTC 61.658 60.000 0.00 0.00 0.00 3.62 R
1439 1520 3.559069 ACCTATGCCAATCTCCAATGTG 58.441 45.455 0.00 0.00 0.00 3.21 R
2196 2652 3.791545 TCCTGATACTTTGGGCCCTAAAT 59.208 43.478 25.70 15.06 0.00 1.40 R
2687 3145 4.935352 TTTTCTGGGTTCAGTTTCCATG 57.065 40.909 0.00 0.00 41.59 3.66 R
3669 4137 0.685660 AAACAGTCGGTCTTCCCCTC 59.314 55.000 0.00 0.00 0.00 4.30 R
3690 4158 6.016443 CAGGTAATAAGTCTAACTCTACCCCG 60.016 46.154 8.34 0.00 32.52 5.73 R
4852 5367 0.035458 GGGACCGAATAGAGGCATGG 59.965 60.000 0.00 0.00 0.00 3.66 R
6173 7298 0.187361 CACAAAACCCCCTCCTTCCA 59.813 55.000 0.00 0.00 0.00 3.53 R
6351 7484 4.028852 TCGTTGAGTCTTCGACCATATG 57.971 45.455 0.00 0.00 34.71 1.78 R
8131 11694 4.641396 TCAGCTGCACTTAGTGTATGTTT 58.359 39.130 14.23 0.00 35.75 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.657013 TGAGAGAGCTCACTTTAGACTCA 58.343 43.478 17.77 12.93 45.88 3.41
35 36 4.699735 TGAGAGAGCTCACTTTAGACTCAG 59.300 45.833 17.77 0.00 45.88 3.35
36 37 4.662278 AGAGAGCTCACTTTAGACTCAGT 58.338 43.478 17.77 0.00 0.00 3.41
37 38 5.076873 AGAGAGCTCACTTTAGACTCAGTT 58.923 41.667 17.77 0.00 0.00 3.16
38 39 6.242396 AGAGAGCTCACTTTAGACTCAGTTA 58.758 40.000 17.77 0.00 0.00 2.24
39 40 6.889722 AGAGAGCTCACTTTAGACTCAGTTAT 59.110 38.462 17.77 0.00 0.00 1.89
40 41 8.050325 AGAGAGCTCACTTTAGACTCAGTTATA 58.950 37.037 17.77 0.00 0.00 0.98
41 42 7.992008 AGAGCTCACTTTAGACTCAGTTATAC 58.008 38.462 17.77 0.00 0.00 1.47
42 43 7.832187 AGAGCTCACTTTAGACTCAGTTATACT 59.168 37.037 17.77 0.00 0.00 2.12
44 45 7.394923 AGCTCACTTTAGACTCAGTTATACTGT 59.605 37.037 6.71 0.00 46.03 3.55
45 46 7.698970 GCTCACTTTAGACTCAGTTATACTGTC 59.301 40.741 6.71 0.00 46.03 3.51
46 47 8.053026 TCACTTTAGACTCAGTTATACTGTCC 57.947 38.462 6.71 0.00 46.03 4.02
47 48 7.889073 TCACTTTAGACTCAGTTATACTGTCCT 59.111 37.037 6.71 5.54 46.03 3.85
48 49 9.175312 CACTTTAGACTCAGTTATACTGTCCTA 57.825 37.037 6.71 4.77 46.03 2.94
49 50 9.750783 ACTTTAGACTCAGTTATACTGTCCTAA 57.249 33.333 6.71 9.26 46.03 2.69
65 66 7.937649 ACTGTCCTAAATAAATAAATTCCCGC 58.062 34.615 0.00 0.00 0.00 6.13
66 67 7.013942 ACTGTCCTAAATAAATAAATTCCCGCC 59.986 37.037 0.00 0.00 0.00 6.13
67 68 6.834451 TGTCCTAAATAAATAAATTCCCGCCA 59.166 34.615 0.00 0.00 0.00 5.69
68 69 7.342284 TGTCCTAAATAAATAAATTCCCGCCAA 59.658 33.333 0.00 0.00 0.00 4.52
69 70 8.198778 GTCCTAAATAAATAAATTCCCGCCAAA 58.801 33.333 0.00 0.00 0.00 3.28
70 71 8.198778 TCCTAAATAAATAAATTCCCGCCAAAC 58.801 33.333 0.00 0.00 0.00 2.93
71 72 7.982354 CCTAAATAAATAAATTCCCGCCAAACA 59.018 33.333 0.00 0.00 0.00 2.83
72 73 7.603963 AAATAAATAAATTCCCGCCAAACAC 57.396 32.000 0.00 0.00 0.00 3.32
73 74 3.603158 AATAAATTCCCGCCAAACACC 57.397 42.857 0.00 0.00 0.00 4.16
74 75 2.296073 TAAATTCCCGCCAAACACCT 57.704 45.000 0.00 0.00 0.00 4.00
75 76 1.419381 AAATTCCCGCCAAACACCTT 58.581 45.000 0.00 0.00 0.00 3.50
76 77 0.966179 AATTCCCGCCAAACACCTTC 59.034 50.000 0.00 0.00 0.00 3.46
77 78 0.112412 ATTCCCGCCAAACACCTTCT 59.888 50.000 0.00 0.00 0.00 2.85
78 79 0.536460 TTCCCGCCAAACACCTTCTC 60.536 55.000 0.00 0.00 0.00 2.87
79 80 1.073199 CCCGCCAAACACCTTCTCT 59.927 57.895 0.00 0.00 0.00 3.10
80 81 0.537371 CCCGCCAAACACCTTCTCTT 60.537 55.000 0.00 0.00 0.00 2.85
81 82 1.271163 CCCGCCAAACACCTTCTCTTA 60.271 52.381 0.00 0.00 0.00 2.10
82 83 2.500229 CCGCCAAACACCTTCTCTTAA 58.500 47.619 0.00 0.00 0.00 1.85
83 84 2.882137 CCGCCAAACACCTTCTCTTAAA 59.118 45.455 0.00 0.00 0.00 1.52
84 85 3.506067 CCGCCAAACACCTTCTCTTAAAT 59.494 43.478 0.00 0.00 0.00 1.40
85 86 4.379499 CCGCCAAACACCTTCTCTTAAATC 60.379 45.833 0.00 0.00 0.00 2.17
86 87 4.455877 CGCCAAACACCTTCTCTTAAATCT 59.544 41.667 0.00 0.00 0.00 2.40
87 88 5.048713 CGCCAAACACCTTCTCTTAAATCTT 60.049 40.000 0.00 0.00 0.00 2.40
88 89 6.148811 CGCCAAACACCTTCTCTTAAATCTTA 59.851 38.462 0.00 0.00 0.00 2.10
89 90 7.308348 CGCCAAACACCTTCTCTTAAATCTTAA 60.308 37.037 0.00 0.00 0.00 1.85
90 91 8.357402 GCCAAACACCTTCTCTTAAATCTTAAA 58.643 33.333 0.00 0.00 0.00 1.52
136 137 6.986904 ATTAACTTGGTTACTAGCTCTTGC 57.013 37.500 0.00 0.00 40.05 4.01
137 138 4.351874 AACTTGGTTACTAGCTCTTGCA 57.648 40.909 0.00 0.00 42.74 4.08
138 139 3.665190 ACTTGGTTACTAGCTCTTGCAC 58.335 45.455 0.00 0.00 42.74 4.57
139 140 2.762535 TGGTTACTAGCTCTTGCACC 57.237 50.000 0.00 0.00 42.74 5.01
140 141 1.278127 TGGTTACTAGCTCTTGCACCC 59.722 52.381 0.00 0.00 42.74 4.61
141 142 1.641577 GTTACTAGCTCTTGCACCCG 58.358 55.000 0.00 0.00 42.74 5.28
142 143 1.203994 GTTACTAGCTCTTGCACCCGA 59.796 52.381 0.00 0.00 42.74 5.14
143 144 0.815734 TACTAGCTCTTGCACCCGAC 59.184 55.000 0.00 0.00 42.74 4.79
144 145 1.153549 CTAGCTCTTGCACCCGACC 60.154 63.158 0.00 0.00 42.74 4.79
145 146 1.888436 CTAGCTCTTGCACCCGACCA 61.888 60.000 0.00 0.00 42.74 4.02
146 147 2.167398 TAGCTCTTGCACCCGACCAC 62.167 60.000 0.00 0.00 42.74 4.16
147 148 2.358737 CTCTTGCACCCGACCACC 60.359 66.667 0.00 0.00 0.00 4.61
148 149 3.164977 TCTTGCACCCGACCACCA 61.165 61.111 0.00 0.00 0.00 4.17
149 150 2.978010 CTTGCACCCGACCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
150 151 4.572571 TTGCACCCGACCACCACC 62.573 66.667 0.00 0.00 0.00 4.61
152 153 4.265056 GCACCCGACCACCACCTT 62.265 66.667 0.00 0.00 0.00 3.50
153 154 2.032071 CACCCGACCACCACCTTC 59.968 66.667 0.00 0.00 0.00 3.46
154 155 2.122547 ACCCGACCACCACCTTCT 60.123 61.111 0.00 0.00 0.00 2.85
155 156 1.768888 ACCCGACCACCACCTTCTT 60.769 57.895 0.00 0.00 0.00 2.52
156 157 1.302511 CCCGACCACCACCTTCTTG 60.303 63.158 0.00 0.00 0.00 3.02
157 158 1.752198 CCGACCACCACCTTCTTGA 59.248 57.895 0.00 0.00 0.00 3.02
158 159 0.107831 CCGACCACCACCTTCTTGAA 59.892 55.000 0.00 0.00 0.00 2.69
159 160 1.476110 CCGACCACCACCTTCTTGAAA 60.476 52.381 0.00 0.00 0.00 2.69
160 161 2.294074 CGACCACCACCTTCTTGAAAA 58.706 47.619 0.00 0.00 0.00 2.29
161 162 2.032924 CGACCACCACCTTCTTGAAAAC 59.967 50.000 0.00 0.00 0.00 2.43
162 163 2.361119 GACCACCACCTTCTTGAAAACC 59.639 50.000 0.00 0.00 0.00 3.27
163 164 2.024369 ACCACCACCTTCTTGAAAACCT 60.024 45.455 0.00 0.00 0.00 3.50
164 165 3.031013 CCACCACCTTCTTGAAAACCTT 58.969 45.455 0.00 0.00 0.00 3.50
165 166 4.211920 CCACCACCTTCTTGAAAACCTTA 58.788 43.478 0.00 0.00 0.00 2.69
166 167 4.037565 CCACCACCTTCTTGAAAACCTTAC 59.962 45.833 0.00 0.00 0.00 2.34
167 168 3.881089 ACCACCTTCTTGAAAACCTTACG 59.119 43.478 0.00 0.00 0.00 3.18
168 169 4.131596 CCACCTTCTTGAAAACCTTACGA 58.868 43.478 0.00 0.00 0.00 3.43
169 170 4.760204 CCACCTTCTTGAAAACCTTACGAT 59.240 41.667 0.00 0.00 0.00 3.73
170 171 5.240844 CCACCTTCTTGAAAACCTTACGATT 59.759 40.000 0.00 0.00 0.00 3.34
171 172 6.142817 CACCTTCTTGAAAACCTTACGATTG 58.857 40.000 0.00 0.00 0.00 2.67
172 173 5.154222 CCTTCTTGAAAACCTTACGATTGC 58.846 41.667 0.00 0.00 0.00 3.56
173 174 4.759516 TCTTGAAAACCTTACGATTGCC 57.240 40.909 0.00 0.00 0.00 4.52
174 175 3.504520 TCTTGAAAACCTTACGATTGCCC 59.495 43.478 0.00 0.00 0.00 5.36
175 176 1.807742 TGAAAACCTTACGATTGCCCG 59.192 47.619 0.00 0.00 0.00 6.13
176 177 1.808343 GAAAACCTTACGATTGCCCGT 59.192 47.619 0.00 0.00 45.54 5.28
177 178 2.766345 AAACCTTACGATTGCCCGTA 57.234 45.000 0.00 0.00 43.20 4.02
183 184 3.940229 ACGATTGCCCGTAAAAGGA 57.060 47.368 0.00 0.00 41.44 3.36
184 185 1.445871 ACGATTGCCCGTAAAAGGAC 58.554 50.000 0.00 0.00 41.44 3.85
185 186 1.270947 ACGATTGCCCGTAAAAGGACA 60.271 47.619 0.00 0.00 41.44 4.02
186 187 1.807742 CGATTGCCCGTAAAAGGACAA 59.192 47.619 0.00 0.00 0.00 3.18
187 188 2.413634 CGATTGCCCGTAAAAGGACAAC 60.414 50.000 0.00 0.00 0.00 3.32
188 189 2.054232 TTGCCCGTAAAAGGACAACA 57.946 45.000 0.00 0.00 0.00 3.33
189 190 1.310904 TGCCCGTAAAAGGACAACAC 58.689 50.000 0.00 0.00 0.00 3.32
190 191 0.594602 GCCCGTAAAAGGACAACACC 59.405 55.000 0.00 0.00 0.00 4.16
191 192 1.816572 GCCCGTAAAAGGACAACACCT 60.817 52.381 0.00 0.00 42.69 4.00
202 203 4.855340 AGGACAACACCTTATGGTTATGG 58.145 43.478 11.93 0.00 46.05 2.74
203 204 4.291249 AGGACAACACCTTATGGTTATGGT 59.709 41.667 11.93 2.73 46.05 3.55
210 211 5.949735 CACCTTATGGTTATGGTGTTCAAC 58.050 41.667 0.00 0.00 46.05 3.18
211 212 5.710099 CACCTTATGGTTATGGTGTTCAACT 59.290 40.000 0.00 0.00 46.05 3.16
212 213 5.944007 ACCTTATGGTTATGGTGTTCAACTC 59.056 40.000 0.00 0.00 46.05 3.01
213 214 6.180472 CCTTATGGTTATGGTGTTCAACTCT 58.820 40.000 0.00 0.00 0.00 3.24
214 215 6.659242 CCTTATGGTTATGGTGTTCAACTCTT 59.341 38.462 0.00 0.00 0.00 2.85
215 216 7.176690 CCTTATGGTTATGGTGTTCAACTCTTT 59.823 37.037 0.00 0.00 0.00 2.52
216 217 9.226606 CTTATGGTTATGGTGTTCAACTCTTTA 57.773 33.333 0.00 0.00 0.00 1.85
217 218 9.747898 TTATGGTTATGGTGTTCAACTCTTTAT 57.252 29.630 0.00 0.00 0.00 1.40
218 219 7.447374 TGGTTATGGTGTTCAACTCTTTATG 57.553 36.000 0.00 0.00 0.00 1.90
219 220 7.227873 TGGTTATGGTGTTCAACTCTTTATGA 58.772 34.615 0.00 0.00 0.00 2.15
220 221 7.888021 TGGTTATGGTGTTCAACTCTTTATGAT 59.112 33.333 0.00 0.00 0.00 2.45
221 222 8.184192 GGTTATGGTGTTCAACTCTTTATGATG 58.816 37.037 0.00 0.00 0.00 3.07
222 223 5.627499 TGGTGTTCAACTCTTTATGATGC 57.373 39.130 0.00 0.00 0.00 3.91
223 224 5.069318 TGGTGTTCAACTCTTTATGATGCA 58.931 37.500 0.00 0.00 0.00 3.96
224 225 5.534278 TGGTGTTCAACTCTTTATGATGCAA 59.466 36.000 0.00 0.00 0.00 4.08
225 226 5.858581 GGTGTTCAACTCTTTATGATGCAAC 59.141 40.000 0.00 0.00 0.00 4.17
226 227 5.858581 GTGTTCAACTCTTTATGATGCAACC 59.141 40.000 0.00 0.00 0.00 3.77
227 228 5.048083 TGTTCAACTCTTTATGATGCAACCC 60.048 40.000 0.00 0.00 0.00 4.11
228 229 4.922206 TCAACTCTTTATGATGCAACCCT 58.078 39.130 0.00 0.00 0.00 4.34
229 230 4.943705 TCAACTCTTTATGATGCAACCCTC 59.056 41.667 0.00 0.00 0.00 4.30
230 231 4.574674 ACTCTTTATGATGCAACCCTCA 57.425 40.909 0.00 0.00 0.00 3.86
231 232 4.521146 ACTCTTTATGATGCAACCCTCAG 58.479 43.478 0.00 0.00 0.00 3.35
232 233 3.282021 TCTTTATGATGCAACCCTCAGC 58.718 45.455 0.00 0.00 0.00 4.26
233 234 2.057137 TTATGATGCAACCCTCAGCC 57.943 50.000 0.00 0.00 0.00 4.85
234 235 0.183492 TATGATGCAACCCTCAGCCC 59.817 55.000 0.00 0.00 0.00 5.19
235 236 1.578215 ATGATGCAACCCTCAGCCCT 61.578 55.000 0.00 0.00 0.00 5.19
236 237 0.913934 TGATGCAACCCTCAGCCCTA 60.914 55.000 0.00 0.00 0.00 3.53
237 238 0.179034 GATGCAACCCTCAGCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
238 239 2.124529 GCAACCCTCAGCCCTAGC 60.125 66.667 0.00 0.00 40.32 3.42
249 250 3.863407 GCCCTAGCTTGCTTGTAGT 57.137 52.632 0.00 0.00 35.50 2.73
250 251 2.115343 GCCCTAGCTTGCTTGTAGTT 57.885 50.000 0.00 0.00 35.50 2.24
251 252 2.437413 GCCCTAGCTTGCTTGTAGTTT 58.563 47.619 0.00 0.00 35.50 2.66
252 253 2.162408 GCCCTAGCTTGCTTGTAGTTTG 59.838 50.000 0.00 0.00 35.50 2.93
253 254 2.162408 CCCTAGCTTGCTTGTAGTTTGC 59.838 50.000 0.00 0.00 0.00 3.68
254 255 2.813754 CCTAGCTTGCTTGTAGTTTGCA 59.186 45.455 0.00 0.00 34.69 4.08
255 256 3.441572 CCTAGCTTGCTTGTAGTTTGCAT 59.558 43.478 0.00 0.00 36.55 3.96
256 257 3.293311 AGCTTGCTTGTAGTTTGCATG 57.707 42.857 0.00 0.00 36.55 4.06
257 258 2.624838 AGCTTGCTTGTAGTTTGCATGT 59.375 40.909 0.00 0.00 36.55 3.21
258 259 3.820467 AGCTTGCTTGTAGTTTGCATGTA 59.180 39.130 0.00 0.00 36.55 2.29
259 260 4.460382 AGCTTGCTTGTAGTTTGCATGTAT 59.540 37.500 0.00 0.00 36.55 2.29
260 261 5.647658 AGCTTGCTTGTAGTTTGCATGTATA 59.352 36.000 0.00 0.00 36.55 1.47
261 262 6.319658 AGCTTGCTTGTAGTTTGCATGTATAT 59.680 34.615 0.00 0.00 36.55 0.86
262 263 6.415867 GCTTGCTTGTAGTTTGCATGTATATG 59.584 38.462 0.00 0.00 36.55 1.78
263 264 7.622893 TTGCTTGTAGTTTGCATGTATATGA 57.377 32.000 3.28 0.00 36.36 2.15
264 265 7.806409 TGCTTGTAGTTTGCATGTATATGAT 57.194 32.000 3.28 0.00 36.36 2.45
265 266 7.641760 TGCTTGTAGTTTGCATGTATATGATG 58.358 34.615 3.28 0.00 36.36 3.07
266 267 7.080099 GCTTGTAGTTTGCATGTATATGATGG 58.920 38.462 3.28 0.00 36.36 3.51
267 268 7.255242 GCTTGTAGTTTGCATGTATATGATGGT 60.255 37.037 3.28 0.00 36.36 3.55
268 269 9.271828 CTTGTAGTTTGCATGTATATGATGGTA 57.728 33.333 3.28 0.00 36.36 3.25
269 270 9.620259 TTGTAGTTTGCATGTATATGATGGTAA 57.380 29.630 3.28 0.00 36.36 2.85
270 271 9.791801 TGTAGTTTGCATGTATATGATGGTAAT 57.208 29.630 3.28 0.00 36.36 1.89
433 434 0.375106 GTAAAGATGCTCCGCTGTGC 59.625 55.000 0.00 0.00 0.00 4.57
448 449 4.332543 CCGCTGTGCTATGACTCATTTTTA 59.667 41.667 0.00 0.00 0.00 1.52
525 526 5.509501 CGTTTTACCACCCACTACTACAAGA 60.510 44.000 0.00 0.00 0.00 3.02
539 540 9.743057 CACTACTACAAGAAGGAGATTTGATAG 57.257 37.037 0.00 0.00 31.30 2.08
541 542 9.743057 CTACTACAAGAAGGAGATTTGATAGTG 57.257 37.037 0.00 0.00 27.54 2.74
599 600 8.571336 ACTTCCTTACAACTCAATTTCTGATTG 58.429 33.333 0.00 0.00 32.14 2.67
641 642 8.383374 TTGGTACTAGTTGGTTCTATTACCAT 57.617 34.615 17.30 0.00 46.02 3.55
654 655 8.657712 GGTTCTATTACCATCCATTAGTACCTT 58.342 37.037 0.00 0.00 38.12 3.50
676 677 3.011144 TGAGGGGATTTGCAAGTGGATTA 59.989 43.478 0.00 0.00 0.00 1.75
677 678 4.023291 GAGGGGATTTGCAAGTGGATTAA 58.977 43.478 0.00 0.00 0.00 1.40
678 679 4.424842 AGGGGATTTGCAAGTGGATTAAA 58.575 39.130 0.00 0.00 0.00 1.52
681 682 6.012596 AGGGGATTTGCAAGTGGATTAAATTT 60.013 34.615 0.00 0.00 0.00 1.82
682 683 6.316140 GGGGATTTGCAAGTGGATTAAATTTC 59.684 38.462 0.00 0.00 0.00 2.17
683 684 7.105588 GGGATTTGCAAGTGGATTAAATTTCT 58.894 34.615 0.00 0.00 0.00 2.52
689 690 8.816640 TGCAAGTGGATTAAATTTCTTTCTTC 57.183 30.769 0.00 0.00 0.00 2.87
714 715 1.069765 CTGTAATGGCCGGAGCGAT 59.930 57.895 5.05 0.00 39.39 4.58
733 734 4.143158 GCGATGAGCTCATGCATAGTTTAG 60.143 45.833 33.33 8.81 44.04 1.85
813 814 5.219343 TCAAGATGATGTGTTGTCTCAGT 57.781 39.130 0.00 0.00 33.11 3.41
815 816 6.159293 TCAAGATGATGTGTTGTCTCAGTAC 58.841 40.000 0.00 0.00 33.11 2.73
816 817 4.738124 AGATGATGTGTTGTCTCAGTACG 58.262 43.478 0.00 0.00 0.00 3.67
824 825 4.565564 GTGTTGTCTCAGTACGTCAAACTT 59.434 41.667 0.00 0.00 0.00 2.66
825 826 4.565166 TGTTGTCTCAGTACGTCAAACTTG 59.435 41.667 0.00 0.00 0.00 3.16
827 828 4.751060 TGTCTCAGTACGTCAAACTTGTT 58.249 39.130 0.00 0.00 0.00 2.83
828 829 5.172934 TGTCTCAGTACGTCAAACTTGTTT 58.827 37.500 0.00 0.00 0.00 2.83
844 915 9.449719 CAAACTTGTTTATAGAGATAGGGTGTT 57.550 33.333 0.00 0.00 0.00 3.32
850 921 9.578576 TGTTTATAGAGATAGGGTGTTATACGT 57.421 33.333 0.00 0.00 0.00 3.57
851 922 9.837525 GTTTATAGAGATAGGGTGTTATACGTG 57.162 37.037 0.00 0.00 0.00 4.49
852 923 9.578576 TTTATAGAGATAGGGTGTTATACGTGT 57.421 33.333 0.00 0.00 0.00 4.49
853 924 5.769484 AGAGATAGGGTGTTATACGTGTG 57.231 43.478 0.00 0.00 0.00 3.82
854 925 5.198965 AGAGATAGGGTGTTATACGTGTGT 58.801 41.667 0.00 0.00 0.00 3.72
855 926 5.655532 AGAGATAGGGTGTTATACGTGTGTT 59.344 40.000 0.00 0.00 0.00 3.32
856 927 6.830324 AGAGATAGGGTGTTATACGTGTGTTA 59.170 38.462 0.00 0.00 0.00 2.41
936 1007 5.766174 TGGTGTTTAATTTCGTTAGCCTTCT 59.234 36.000 0.00 0.00 0.00 2.85
966 1037 1.527611 TGTCGTCGTCTCCACCACT 60.528 57.895 0.00 0.00 0.00 4.00
1254 1335 2.164422 GAGAGTGCAATTTTAGTGGGGC 59.836 50.000 0.00 0.00 0.00 5.80
1439 1520 3.934962 GCCGAGATGGAGGAGGGC 61.935 72.222 0.00 0.00 42.00 5.19
1697 1778 7.393234 ACCCGATGAAACTGAGATTTTATCAAA 59.607 33.333 10.41 0.00 35.39 2.69
1698 1779 8.408601 CCCGATGAAACTGAGATTTTATCAAAT 58.591 33.333 10.41 0.00 35.39 2.32
1827 1908 1.149101 TCCTGAGGTCCTTGCCTTTT 58.851 50.000 0.00 0.00 39.34 2.27
1929 2010 2.348666 CGGTGTTGCTTCCTATCTTTCG 59.651 50.000 0.00 0.00 0.00 3.46
2195 2651 9.816787 TCAGTAATTTTTCCCTGTATAAACCTT 57.183 29.630 0.00 0.00 0.00 3.50
2418 2874 5.068987 TGCTTAGGGATCCAATGCATTAAAC 59.931 40.000 15.23 2.33 0.00 2.01
2687 3145 4.702131 ACATCAGCCATCTTAAAGTTGGAC 59.298 41.667 7.35 0.00 37.27 4.02
2735 3193 7.720957 TGCTAGGCATGAACATTTAGTGATATT 59.279 33.333 0.00 0.00 31.71 1.28
2779 3237 9.788960 ATAACTTTATTTTTCGAATGAGGCTTC 57.211 29.630 0.00 0.00 0.00 3.86
2820 3278 8.806146 ACTTCACCACTTTATTTCTTTGCATAT 58.194 29.630 0.00 0.00 0.00 1.78
2821 3279 8.984891 TTCACCACTTTATTTCTTTGCATATG 57.015 30.769 0.00 0.00 0.00 1.78
2822 3280 8.347004 TCACCACTTTATTTCTTTGCATATGA 57.653 30.769 6.97 0.00 0.00 2.15
2823 3281 8.461222 TCACCACTTTATTTCTTTGCATATGAG 58.539 33.333 6.97 0.00 0.00 2.90
2824 3282 8.246180 CACCACTTTATTTCTTTGCATATGAGT 58.754 33.333 6.97 0.00 0.00 3.41
2825 3283 9.461312 ACCACTTTATTTCTTTGCATATGAGTA 57.539 29.630 6.97 0.00 0.00 2.59
2863 3321 5.712917 TGTGTTACAGGTTTTGAAAACTCCT 59.287 36.000 18.95 7.31 32.57 3.69
3453 3913 2.744166 GCACTGAGCTGCATCCTTCATA 60.744 50.000 1.02 0.00 41.15 2.15
3690 4158 1.235281 GGGGAAGACCGACTGTTTGC 61.235 60.000 0.00 0.00 41.60 3.68
3691 4159 1.566018 GGGAAGACCGACTGTTTGCG 61.566 60.000 0.00 0.00 36.97 4.85
3885 4359 4.657013 AGGGAGGTGAAGAAGACAATTTC 58.343 43.478 0.00 0.00 0.00 2.17
3978 4452 2.279810 TTCGATGGAGCGGGTCACA 61.280 57.895 9.66 5.29 0.00 3.58
4074 4548 6.483640 AGATCTTTGAGGTTGTAGTTGTGTTC 59.516 38.462 0.00 0.00 0.00 3.18
4198 4672 1.134788 ACTCCTCGAATTGCCCTAACG 60.135 52.381 0.00 0.00 0.00 3.18
4478 4952 2.042259 CGGCATCTGCTCAAAGGCA 61.042 57.895 1.70 0.00 41.70 4.75
4710 5185 2.027314 CTCTCCATCGGCTGCGAG 59.973 66.667 0.00 0.00 0.00 5.03
4722 5197 1.680651 CTGCGAGTCTCCCTCCACT 60.681 63.158 0.00 0.00 36.82 4.00
4836 5351 2.934887 GGAGTACTCCTCACCTCTACC 58.065 57.143 31.12 3.92 46.16 3.18
4837 5352 2.423231 GGAGTACTCCTCACCTCTACCC 60.423 59.091 31.12 3.71 46.16 3.69
4838 5353 2.510800 GAGTACTCCTCACCTCTACCCT 59.489 54.545 12.13 0.00 40.17 4.34
4839 5354 2.927685 AGTACTCCTCACCTCTACCCTT 59.072 50.000 0.00 0.00 0.00 3.95
4840 5355 2.535836 ACTCCTCACCTCTACCCTTC 57.464 55.000 0.00 0.00 0.00 3.46
4841 5356 1.341187 ACTCCTCACCTCTACCCTTCG 60.341 57.143 0.00 0.00 0.00 3.79
4842 5357 0.997363 TCCTCACCTCTACCCTTCGA 59.003 55.000 0.00 0.00 0.00 3.71
4843 5358 1.569548 TCCTCACCTCTACCCTTCGAT 59.430 52.381 0.00 0.00 0.00 3.59
4844 5359 1.957877 CCTCACCTCTACCCTTCGATC 59.042 57.143 0.00 0.00 0.00 3.69
4845 5360 2.423660 CCTCACCTCTACCCTTCGATCT 60.424 54.545 0.00 0.00 0.00 2.75
4846 5361 3.292460 CTCACCTCTACCCTTCGATCTT 58.708 50.000 0.00 0.00 0.00 2.40
4847 5362 3.024547 TCACCTCTACCCTTCGATCTTG 58.975 50.000 0.00 0.00 0.00 3.02
4848 5363 3.024547 CACCTCTACCCTTCGATCTTGA 58.975 50.000 0.00 0.00 0.00 3.02
4849 5364 3.639094 CACCTCTACCCTTCGATCTTGAT 59.361 47.826 0.00 0.00 0.00 2.57
4850 5365 3.639094 ACCTCTACCCTTCGATCTTGATG 59.361 47.826 0.00 0.00 0.00 3.07
4851 5366 3.006323 CCTCTACCCTTCGATCTTGATGG 59.994 52.174 0.00 0.00 33.96 3.51
4852 5367 2.365617 TCTACCCTTCGATCTTGATGGC 59.634 50.000 0.00 0.00 33.09 4.40
4853 5368 0.181350 ACCCTTCGATCTTGATGGCC 59.819 55.000 0.00 0.00 33.09 5.36
4854 5369 0.181114 CCCTTCGATCTTGATGGCCA 59.819 55.000 8.56 8.56 33.09 5.36
4855 5370 1.202855 CCCTTCGATCTTGATGGCCAT 60.203 52.381 20.96 20.96 33.09 4.40
4856 5371 1.878088 CCTTCGATCTTGATGGCCATG 59.122 52.381 26.56 9.40 0.00 3.66
4857 5372 1.266175 CTTCGATCTTGATGGCCATGC 59.734 52.381 26.56 15.28 0.00 4.06
5145 5979 3.296322 TTTTATGCAAAGAACTGGCCG 57.704 42.857 0.00 0.00 0.00 6.13
5293 6175 6.382869 GCTTACTGCATTTCAGGAATATGT 57.617 37.500 0.00 0.00 44.30 2.29
5360 6264 8.131100 TGCATTTTCAGTTCTTACTTTCTTCTG 58.869 33.333 0.00 0.00 30.26 3.02
5397 6301 3.433513 GTGTAATCACGTACTCCCTCC 57.566 52.381 0.00 0.00 34.79 4.30
5398 6302 2.756760 GTGTAATCACGTACTCCCTCCA 59.243 50.000 0.00 0.00 34.79 3.86
5399 6303 3.383825 GTGTAATCACGTACTCCCTCCAT 59.616 47.826 0.00 0.00 34.79 3.41
5400 6304 3.635373 TGTAATCACGTACTCCCTCCATC 59.365 47.826 0.00 0.00 0.00 3.51
5401 6305 1.705873 ATCACGTACTCCCTCCATCC 58.294 55.000 0.00 0.00 0.00 3.51
5402 6306 0.750546 TCACGTACTCCCTCCATCCG 60.751 60.000 0.00 0.00 0.00 4.18
5403 6307 0.750546 CACGTACTCCCTCCATCCGA 60.751 60.000 0.00 0.00 0.00 4.55
5404 6308 0.033796 ACGTACTCCCTCCATCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
5405 6309 1.108776 CGTACTCCCTCCATCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
5406 6310 1.479323 CGTACTCCCTCCATCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
5407 6311 2.093869 CGTACTCCCTCCATCCGAAAAA 60.094 50.000 0.00 0.00 0.00 1.94
5408 6312 2.789409 ACTCCCTCCATCCGAAAAAG 57.211 50.000 0.00 0.00 0.00 2.27
5409 6313 1.340114 ACTCCCTCCATCCGAAAAAGC 60.340 52.381 0.00 0.00 0.00 3.51
5410 6314 0.991920 TCCCTCCATCCGAAAAAGCT 59.008 50.000 0.00 0.00 0.00 3.74
5411 6315 1.354368 TCCCTCCATCCGAAAAAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
5412 6316 1.474077 CCCTCCATCCGAAAAAGCTTG 59.526 52.381 0.00 0.00 0.00 4.01
5413 6317 2.162681 CCTCCATCCGAAAAAGCTTGT 58.837 47.619 0.00 0.00 0.00 3.16
5414 6318 2.162408 CCTCCATCCGAAAAAGCTTGTC 59.838 50.000 0.00 0.00 0.00 3.18
5415 6319 2.159382 TCCATCCGAAAAAGCTTGTCC 58.841 47.619 0.00 0.00 0.00 4.02
5416 6320 1.202348 CCATCCGAAAAAGCTTGTCCC 59.798 52.381 0.00 0.00 0.00 4.46
5417 6321 1.885887 CATCCGAAAAAGCTTGTCCCA 59.114 47.619 0.00 0.00 0.00 4.37
5418 6322 2.060050 TCCGAAAAAGCTTGTCCCAA 57.940 45.000 0.00 0.00 0.00 4.12
5419 6323 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
5420 6324 1.681264 CCGAAAAAGCTTGTCCCAAGT 59.319 47.619 0.00 0.00 0.00 3.16
5421 6325 2.100749 CCGAAAAAGCTTGTCCCAAGTT 59.899 45.455 0.00 0.00 0.00 2.66
5422 6326 3.430236 CCGAAAAAGCTTGTCCCAAGTTT 60.430 43.478 0.00 3.41 0.00 2.66
5423 6327 3.551485 CGAAAAAGCTTGTCCCAAGTTTG 59.449 43.478 0.00 0.00 0.00 2.93
5424 6328 4.503910 GAAAAAGCTTGTCCCAAGTTTGT 58.496 39.130 0.00 0.00 0.00 2.83
5425 6329 4.551702 AAAAGCTTGTCCCAAGTTTGTT 57.448 36.364 0.00 2.58 0.00 2.83
5426 6330 3.801114 AAGCTTGTCCCAAGTTTGTTC 57.199 42.857 0.00 0.00 0.00 3.18
5427 6331 2.031870 AGCTTGTCCCAAGTTTGTTCC 58.968 47.619 5.92 0.00 0.00 3.62
5428 6332 2.031870 GCTTGTCCCAAGTTTGTTCCT 58.968 47.619 5.92 0.00 0.00 3.36
5429 6333 2.034685 GCTTGTCCCAAGTTTGTTCCTC 59.965 50.000 5.92 0.00 0.00 3.71
5430 6334 3.287222 CTTGTCCCAAGTTTGTTCCTCA 58.713 45.455 0.00 0.00 0.00 3.86
5431 6335 3.374042 TGTCCCAAGTTTGTTCCTCAA 57.626 42.857 0.00 0.00 0.00 3.02
5432 6336 3.702792 TGTCCCAAGTTTGTTCCTCAAA 58.297 40.909 0.00 0.00 42.79 2.69
5433 6337 4.285863 TGTCCCAAGTTTGTTCCTCAAAT 58.714 39.130 0.00 0.00 45.88 2.32
5434 6338 4.099266 TGTCCCAAGTTTGTTCCTCAAATG 59.901 41.667 0.00 0.00 45.88 2.32
5435 6339 4.340950 GTCCCAAGTTTGTTCCTCAAATGA 59.659 41.667 0.00 0.00 45.88 2.57
5436 6340 5.011023 GTCCCAAGTTTGTTCCTCAAATGAT 59.989 40.000 0.00 0.00 45.88 2.45
5437 6341 5.010922 TCCCAAGTTTGTTCCTCAAATGATG 59.989 40.000 0.00 0.00 45.88 3.07
5438 6342 5.221501 CCCAAGTTTGTTCCTCAAATGATGT 60.222 40.000 0.00 0.00 45.88 3.06
5439 6343 6.015519 CCCAAGTTTGTTCCTCAAATGATGTA 60.016 38.462 0.00 0.00 45.88 2.29
5440 6344 7.309990 CCCAAGTTTGTTCCTCAAATGATGTAT 60.310 37.037 0.00 0.00 45.88 2.29
5441 6345 7.756722 CCAAGTTTGTTCCTCAAATGATGTATC 59.243 37.037 0.00 0.00 45.88 2.24
5442 6346 8.517878 CAAGTTTGTTCCTCAAATGATGTATCT 58.482 33.333 0.00 0.00 45.88 1.98
5443 6347 9.739276 AAGTTTGTTCCTCAAATGATGTATCTA 57.261 29.630 0.00 0.00 45.88 1.98
5444 6348 9.388506 AGTTTGTTCCTCAAATGATGTATCTAG 57.611 33.333 0.00 0.00 45.88 2.43
5445 6349 7.792374 TTGTTCCTCAAATGATGTATCTAGC 57.208 36.000 0.00 0.00 32.64 3.42
5446 6350 6.888105 TGTTCCTCAAATGATGTATCTAGCA 58.112 36.000 0.00 0.00 0.00 3.49
5447 6351 6.763135 TGTTCCTCAAATGATGTATCTAGCAC 59.237 38.462 0.00 0.00 0.00 4.40
5448 6352 6.737720 TCCTCAAATGATGTATCTAGCACT 57.262 37.500 0.00 0.00 0.00 4.40
5449 6353 7.839680 TCCTCAAATGATGTATCTAGCACTA 57.160 36.000 0.00 0.00 0.00 2.74
5450 6354 8.250143 TCCTCAAATGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
5451 6355 8.144478 TCCTCAAATGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
5452 6356 8.147058 CCTCAAATGATGTATCTAGCACTAACT 58.853 37.037 0.00 0.00 0.00 2.24
5453 6357 9.539825 CTCAAATGATGTATCTAGCACTAACTT 57.460 33.333 0.00 0.00 0.00 2.66
5454 6358 9.317936 TCAAATGATGTATCTAGCACTAACTTG 57.682 33.333 0.00 0.00 0.00 3.16
5455 6359 8.554528 CAAATGATGTATCTAGCACTAACTTGG 58.445 37.037 0.00 0.00 0.00 3.61
5456 6360 6.791867 TGATGTATCTAGCACTAACTTGGT 57.208 37.500 0.00 0.00 0.00 3.67
5457 6361 6.573434 TGATGTATCTAGCACTAACTTGGTG 58.427 40.000 0.97 0.97 37.70 4.17
5469 6373 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
5470 6374 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
5471 6375 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
5472 6376 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
5473 6377 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
5474 6378 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
5475 6379 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
5476 6380 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
5477 6381 5.366477 TGGTGCTAGATACATCCATTTGAGA 59.634 40.000 0.00 0.00 0.00 3.27
5478 6382 5.931146 GGTGCTAGATACATCCATTTGAGAG 59.069 44.000 0.00 0.00 0.00 3.20
5479 6383 6.239430 GGTGCTAGATACATCCATTTGAGAGA 60.239 42.308 0.00 0.00 0.00 3.10
5480 6384 6.644592 GTGCTAGATACATCCATTTGAGAGAC 59.355 42.308 0.00 0.00 0.00 3.36
5481 6385 6.324770 TGCTAGATACATCCATTTGAGAGACA 59.675 38.462 0.00 0.00 0.00 3.41
5482 6386 7.147672 TGCTAGATACATCCATTTGAGAGACAA 60.148 37.037 0.00 0.00 36.65 3.18
5483 6387 7.384660 GCTAGATACATCCATTTGAGAGACAAG 59.615 40.741 0.00 0.00 39.77 3.16
5484 6388 6.054295 AGATACATCCATTTGAGAGACAAGC 58.946 40.000 0.00 0.00 39.77 4.01
5485 6389 4.298103 ACATCCATTTGAGAGACAAGCT 57.702 40.909 0.00 0.00 39.77 3.74
5486 6390 4.660168 ACATCCATTTGAGAGACAAGCTT 58.340 39.130 0.00 0.00 39.77 3.74
5487 6391 5.075493 ACATCCATTTGAGAGACAAGCTTT 58.925 37.500 0.00 0.00 39.77 3.51
5488 6392 5.537674 ACATCCATTTGAGAGACAAGCTTTT 59.462 36.000 0.00 0.00 39.77 2.27
5489 6393 6.041296 ACATCCATTTGAGAGACAAGCTTTTT 59.959 34.615 0.00 0.00 39.77 1.94
5490 6394 6.076981 TCCATTTGAGAGACAAGCTTTTTC 57.923 37.500 0.00 0.00 39.77 2.29
5491 6395 4.913924 CCATTTGAGAGACAAGCTTTTTCG 59.086 41.667 0.00 0.00 39.77 3.46
5492 6396 4.552166 TTTGAGAGACAAGCTTTTTCGG 57.448 40.909 0.00 0.00 39.77 4.30
5493 6397 3.469008 TGAGAGACAAGCTTTTTCGGA 57.531 42.857 0.00 0.00 0.00 4.55
5494 6398 3.131396 TGAGAGACAAGCTTTTTCGGAC 58.869 45.455 0.00 0.00 0.00 4.79
5495 6399 2.135933 AGAGACAAGCTTTTTCGGACG 58.864 47.619 0.00 0.00 0.00 4.79
5496 6400 1.194772 GAGACAAGCTTTTTCGGACGG 59.805 52.381 0.00 0.00 0.00 4.79
5497 6401 1.202604 AGACAAGCTTTTTCGGACGGA 60.203 47.619 0.00 0.00 0.00 4.69
5498 6402 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
5499 6403 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
5500 6404 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
5501 6405 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
5573 6480 9.770097 AACAAGTCACTCCATTAGTCATATATG 57.230 33.333 6.36 6.36 35.76 1.78
5659 6574 2.555757 CAAAGGAGGAGCAAAAGTCAGG 59.444 50.000 0.00 0.00 0.00 3.86
5766 6681 2.335011 GCACACTTTTGCGGGACC 59.665 61.111 0.00 0.00 31.51 4.46
5867 6819 0.953471 TGCACCGCCACAACTATGAC 60.953 55.000 0.00 0.00 0.00 3.06
5885 6837 3.390521 CCCCGCCTGCTGTAGTCA 61.391 66.667 0.00 0.00 0.00 3.41
6118 7233 0.602638 CCGCCATGGCTATTTCGCTA 60.603 55.000 33.07 0.00 39.32 4.26
6132 7257 0.179048 TCGCTACGGGATAGGAACGA 60.179 55.000 0.00 0.00 0.00 3.85
6133 7258 0.040603 CGCTACGGGATAGGAACGAC 60.041 60.000 0.00 0.00 0.00 4.34
6173 7298 6.127479 TGCTCAAAAACCTGACAACATTACTT 60.127 34.615 0.00 0.00 0.00 2.24
6351 7484 2.744202 AGTGTCATCCGTCATCTTTTGC 59.256 45.455 0.00 0.00 0.00 3.68
6534 7667 6.070194 TCGAGGGAAGAAAAGGATCAATTACT 60.070 38.462 0.00 0.00 0.00 2.24
6990 10466 6.547141 TCAATACATGATTGTGAGGGATTTCC 59.453 38.462 0.00 0.00 44.66 3.13
7155 10631 7.815383 AGTTTGGGATCACATGGAGAATTATA 58.185 34.615 0.00 0.00 0.00 0.98
7531 11007 2.620251 TTGTAGCGCAAGGAGCATAT 57.380 45.000 11.47 0.00 46.13 1.78
7840 11317 3.469008 TGTAATTCCATGTAGCCTCCG 57.531 47.619 0.00 0.00 0.00 4.63
7937 11416 3.537580 TGCCCGAAGATGTTGGTTATAC 58.462 45.455 0.00 0.00 0.00 1.47
8131 11694 5.248248 TGAACAATGAGAGTGTATCTTGGGA 59.752 40.000 0.00 0.00 38.84 4.37
8138 11701 6.640518 TGAGAGTGTATCTTGGGAAACATAC 58.359 40.000 0.00 0.00 38.84 2.39
8248 12298 9.868160 AAAAAGATAAGCCTGGCTATAAATAGT 57.132 29.630 23.69 6.02 38.25 2.12
8282 12332 9.639601 CTTAAATTTAAGTTGAATCTGGGGAAC 57.360 33.333 24.06 0.00 36.31 3.62
8283 12333 7.610580 AAATTTAAGTTGAATCTGGGGAACA 57.389 32.000 0.00 0.00 0.00 3.18
8293 12343 1.383799 TGGGGAACAGAGCATTGGG 59.616 57.895 0.00 0.00 0.00 4.12
8294 12344 1.139498 TGGGGAACAGAGCATTGGGA 61.139 55.000 0.00 0.00 0.00 4.37
8295 12345 0.394899 GGGGAACAGAGCATTGGGAG 60.395 60.000 0.00 0.00 0.00 4.30
8296 12346 0.394899 GGGAACAGAGCATTGGGAGG 60.395 60.000 0.00 0.00 0.00 4.30
8300 12350 0.617413 ACAGAGCATTGGGAGGACTG 59.383 55.000 0.00 0.00 0.00 3.51
8456 12506 2.486966 GCCCAAGATGCAAGCGAC 59.513 61.111 0.00 0.00 0.00 5.19
8510 12564 1.751351 TCCTGATGATGGTCGTCACTC 59.249 52.381 0.00 0.00 37.48 3.51
8540 12594 3.803162 GGCAGAGGAGGAAGGCCC 61.803 72.222 0.00 0.00 38.70 5.80
8714 12768 4.514577 CCCCGATCGTTGCGCTCT 62.515 66.667 15.09 0.00 0.00 4.09
8764 12818 1.461559 GCTCTGAGCTCTTGGCATTT 58.538 50.000 21.93 0.00 44.79 2.32
8822 12876 0.107017 ACCGAATGCCCTTGGATGAG 60.107 55.000 0.00 0.00 0.00 2.90
8863 12917 1.320344 TTCGTATCCGGCTCTGCTGT 61.320 55.000 0.00 0.00 32.22 4.40
8936 12990 1.614525 TGGATCTGCAGCTGGGAGT 60.615 57.895 17.12 0.00 36.18 3.85
9006 13060 1.070758 GGTTGAACAGCTCCAGAGACA 59.929 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.802465 TGAGCTCTCTCATCAATTTGAGTT 58.198 37.500 16.19 0.00 43.95 3.01
1 2 5.417754 TGAGCTCTCTCATCAATTTGAGT 57.582 39.130 16.19 0.00 43.95 3.41
12 13 4.657013 TGAGTCTAAAGTGAGCTCTCTCA 58.343 43.478 18.12 12.74 46.43 3.27
13 14 4.700213 ACTGAGTCTAAAGTGAGCTCTCTC 59.300 45.833 18.12 6.10 39.78 3.20
14 15 4.662278 ACTGAGTCTAAAGTGAGCTCTCT 58.338 43.478 16.19 14.26 0.00 3.10
15 16 5.385509 AACTGAGTCTAAAGTGAGCTCTC 57.614 43.478 16.19 11.84 0.00 3.20
16 17 7.832187 AGTATAACTGAGTCTAAAGTGAGCTCT 59.168 37.037 16.19 0.00 0.00 4.09
17 18 7.992008 AGTATAACTGAGTCTAAAGTGAGCTC 58.008 38.462 6.82 6.82 0.00 4.09
18 19 7.948034 AGTATAACTGAGTCTAAAGTGAGCT 57.052 36.000 0.00 0.00 0.00 4.09
39 40 9.059260 GCGGGAATTTATTTATTTAGGACAGTA 57.941 33.333 0.00 0.00 0.00 2.74
40 41 7.013942 GGCGGGAATTTATTTATTTAGGACAGT 59.986 37.037 0.00 0.00 0.00 3.55
41 42 7.013846 TGGCGGGAATTTATTTATTTAGGACAG 59.986 37.037 0.00 0.00 0.00 3.51
42 43 6.834451 TGGCGGGAATTTATTTATTTAGGACA 59.166 34.615 0.00 0.00 0.00 4.02
43 44 7.279750 TGGCGGGAATTTATTTATTTAGGAC 57.720 36.000 0.00 0.00 0.00 3.85
44 45 7.899648 TTGGCGGGAATTTATTTATTTAGGA 57.100 32.000 0.00 0.00 0.00 2.94
45 46 7.982354 TGTTTGGCGGGAATTTATTTATTTAGG 59.018 33.333 0.00 0.00 0.00 2.69
46 47 8.813282 GTGTTTGGCGGGAATTTATTTATTTAG 58.187 33.333 0.00 0.00 0.00 1.85
47 48 7.764901 GGTGTTTGGCGGGAATTTATTTATTTA 59.235 33.333 0.00 0.00 0.00 1.40
48 49 6.596106 GGTGTTTGGCGGGAATTTATTTATTT 59.404 34.615 0.00 0.00 0.00 1.40
49 50 6.070481 AGGTGTTTGGCGGGAATTTATTTATT 60.070 34.615 0.00 0.00 0.00 1.40
50 51 5.423931 AGGTGTTTGGCGGGAATTTATTTAT 59.576 36.000 0.00 0.00 0.00 1.40
51 52 4.773149 AGGTGTTTGGCGGGAATTTATTTA 59.227 37.500 0.00 0.00 0.00 1.40
52 53 3.580895 AGGTGTTTGGCGGGAATTTATTT 59.419 39.130 0.00 0.00 0.00 1.40
53 54 3.169908 AGGTGTTTGGCGGGAATTTATT 58.830 40.909 0.00 0.00 0.00 1.40
54 55 2.815158 AGGTGTTTGGCGGGAATTTAT 58.185 42.857 0.00 0.00 0.00 1.40
55 56 2.296073 AGGTGTTTGGCGGGAATTTA 57.704 45.000 0.00 0.00 0.00 1.40
56 57 1.343142 GAAGGTGTTTGGCGGGAATTT 59.657 47.619 0.00 0.00 0.00 1.82
57 58 0.966179 GAAGGTGTTTGGCGGGAATT 59.034 50.000 0.00 0.00 0.00 2.17
58 59 0.112412 AGAAGGTGTTTGGCGGGAAT 59.888 50.000 0.00 0.00 0.00 3.01
59 60 0.536460 GAGAAGGTGTTTGGCGGGAA 60.536 55.000 0.00 0.00 0.00 3.97
60 61 1.072505 GAGAAGGTGTTTGGCGGGA 59.927 57.895 0.00 0.00 0.00 5.14
61 62 0.537371 AAGAGAAGGTGTTTGGCGGG 60.537 55.000 0.00 0.00 0.00 6.13
62 63 2.178912 TAAGAGAAGGTGTTTGGCGG 57.821 50.000 0.00 0.00 0.00 6.13
63 64 4.455877 AGATTTAAGAGAAGGTGTTTGGCG 59.544 41.667 0.00 0.00 0.00 5.69
64 65 5.966742 AGATTTAAGAGAAGGTGTTTGGC 57.033 39.130 0.00 0.00 0.00 4.52
110 111 8.297426 GCAAGAGCTAGTAACCAAGTTAATTTT 58.703 33.333 0.00 0.00 37.91 1.82
111 112 7.447238 TGCAAGAGCTAGTAACCAAGTTAATTT 59.553 33.333 0.00 0.00 42.74 1.82
112 113 6.940298 TGCAAGAGCTAGTAACCAAGTTAATT 59.060 34.615 0.00 0.00 42.74 1.40
113 114 6.371825 GTGCAAGAGCTAGTAACCAAGTTAAT 59.628 38.462 0.00 0.00 42.74 1.40
114 115 5.699458 GTGCAAGAGCTAGTAACCAAGTTAA 59.301 40.000 0.00 0.00 42.74 2.01
115 116 5.235516 GTGCAAGAGCTAGTAACCAAGTTA 58.764 41.667 0.00 0.00 42.74 2.24
116 117 4.065789 GTGCAAGAGCTAGTAACCAAGTT 58.934 43.478 0.00 0.00 42.74 2.66
117 118 3.557264 GGTGCAAGAGCTAGTAACCAAGT 60.557 47.826 0.00 0.00 42.74 3.16
118 119 3.003480 GGTGCAAGAGCTAGTAACCAAG 58.997 50.000 0.00 0.00 42.74 3.61
119 120 2.290071 GGGTGCAAGAGCTAGTAACCAA 60.290 50.000 0.00 0.00 42.74 3.67
120 121 1.278127 GGGTGCAAGAGCTAGTAACCA 59.722 52.381 0.00 0.00 42.74 3.67
121 122 1.739371 CGGGTGCAAGAGCTAGTAACC 60.739 57.143 0.00 0.00 42.74 2.85
122 123 1.203994 TCGGGTGCAAGAGCTAGTAAC 59.796 52.381 0.00 0.00 42.74 2.50
123 124 1.203994 GTCGGGTGCAAGAGCTAGTAA 59.796 52.381 0.00 0.00 42.74 2.24
124 125 0.815734 GTCGGGTGCAAGAGCTAGTA 59.184 55.000 0.00 0.00 42.74 1.82
125 126 1.592223 GTCGGGTGCAAGAGCTAGT 59.408 57.895 0.00 0.00 42.74 2.57
126 127 1.153549 GGTCGGGTGCAAGAGCTAG 60.154 63.158 9.22 0.00 42.74 3.42
127 128 1.911269 TGGTCGGGTGCAAGAGCTA 60.911 57.895 15.17 3.45 42.74 3.32
128 129 3.241530 TGGTCGGGTGCAAGAGCT 61.242 61.111 15.17 0.00 42.74 4.09
129 130 3.050275 GTGGTCGGGTGCAAGAGC 61.050 66.667 9.47 9.47 42.57 4.09
130 131 2.358737 GGTGGTCGGGTGCAAGAG 60.359 66.667 0.00 0.00 0.00 2.85
131 132 3.164977 TGGTGGTCGGGTGCAAGA 61.165 61.111 0.00 0.00 0.00 3.02
132 133 2.978010 GTGGTGGTCGGGTGCAAG 60.978 66.667 0.00 0.00 0.00 4.01
133 134 4.572571 GGTGGTGGTCGGGTGCAA 62.573 66.667 0.00 0.00 0.00 4.08
135 136 4.265056 AAGGTGGTGGTCGGGTGC 62.265 66.667 0.00 0.00 0.00 5.01
136 137 2.032071 GAAGGTGGTGGTCGGGTG 59.968 66.667 0.00 0.00 0.00 4.61
137 138 1.768888 AAGAAGGTGGTGGTCGGGT 60.769 57.895 0.00 0.00 0.00 5.28
138 139 1.302511 CAAGAAGGTGGTGGTCGGG 60.303 63.158 0.00 0.00 0.00 5.14
139 140 0.107831 TTCAAGAAGGTGGTGGTCGG 59.892 55.000 0.00 0.00 0.00 4.79
140 141 1.961793 TTTCAAGAAGGTGGTGGTCG 58.038 50.000 0.00 0.00 0.00 4.79
141 142 2.361119 GGTTTTCAAGAAGGTGGTGGTC 59.639 50.000 0.00 0.00 0.00 4.02
142 143 2.024369 AGGTTTTCAAGAAGGTGGTGGT 60.024 45.455 0.00 0.00 0.00 4.16
143 144 2.666317 AGGTTTTCAAGAAGGTGGTGG 58.334 47.619 0.00 0.00 0.00 4.61
144 145 4.261031 CGTAAGGTTTTCAAGAAGGTGGTG 60.261 45.833 0.00 0.00 0.00 4.17
145 146 3.881089 CGTAAGGTTTTCAAGAAGGTGGT 59.119 43.478 0.00 0.00 0.00 4.16
146 147 4.131596 TCGTAAGGTTTTCAAGAAGGTGG 58.868 43.478 0.00 0.00 38.47 4.61
147 148 5.941948 ATCGTAAGGTTTTCAAGAAGGTG 57.058 39.130 0.00 0.00 38.47 4.00
148 149 5.278315 GCAATCGTAAGGTTTTCAAGAAGGT 60.278 40.000 0.00 0.00 37.42 3.50
149 150 5.154222 GCAATCGTAAGGTTTTCAAGAAGG 58.846 41.667 0.00 0.00 37.42 3.46
150 151 5.154222 GGCAATCGTAAGGTTTTCAAGAAG 58.846 41.667 0.00 0.00 37.42 2.85
151 152 4.022676 GGGCAATCGTAAGGTTTTCAAGAA 60.023 41.667 0.00 0.00 37.42 2.52
152 153 3.504520 GGGCAATCGTAAGGTTTTCAAGA 59.495 43.478 0.00 0.00 37.42 3.02
153 154 3.669557 CGGGCAATCGTAAGGTTTTCAAG 60.670 47.826 0.00 0.00 37.42 3.02
154 155 2.226912 CGGGCAATCGTAAGGTTTTCAA 59.773 45.455 0.00 0.00 37.42 2.69
155 156 1.807742 CGGGCAATCGTAAGGTTTTCA 59.192 47.619 0.00 0.00 37.42 2.69
156 157 1.808343 ACGGGCAATCGTAAGGTTTTC 59.192 47.619 0.00 0.00 37.42 2.29
157 158 1.900245 ACGGGCAATCGTAAGGTTTT 58.100 45.000 0.00 0.00 37.42 2.43
158 159 2.766345 TACGGGCAATCGTAAGGTTT 57.234 45.000 4.19 0.00 37.42 3.27
159 160 2.766345 TTACGGGCAATCGTAAGGTT 57.234 45.000 12.61 0.00 46.43 3.50
164 165 2.028294 TGTCCTTTTACGGGCAATCGTA 60.028 45.455 2.79 2.79 43.59 3.43
165 166 1.270947 TGTCCTTTTACGGGCAATCGT 60.271 47.619 4.56 4.56 45.88 3.73
166 167 1.444836 TGTCCTTTTACGGGCAATCG 58.555 50.000 0.00 0.00 35.32 3.34
169 170 1.677052 GTGTTGTCCTTTTACGGGCAA 59.323 47.619 0.00 0.00 45.77 4.52
170 171 1.310904 GTGTTGTCCTTTTACGGGCA 58.689 50.000 0.00 0.00 36.76 5.36
171 172 0.594602 GGTGTTGTCCTTTTACGGGC 59.405 55.000 0.00 0.00 0.00 6.13
172 173 2.265589 AGGTGTTGTCCTTTTACGGG 57.734 50.000 0.00 0.00 33.52 5.28
173 174 4.155280 CCATAAGGTGTTGTCCTTTTACGG 59.845 45.833 3.31 0.00 44.36 4.02
174 175 5.291293 CCATAAGGTGTTGTCCTTTTACG 57.709 43.478 3.31 0.00 44.36 3.18
189 190 6.180472 AGAGTTGAACACCATAACCATAAGG 58.820 40.000 0.00 0.00 42.21 2.69
190 191 7.687941 AAGAGTTGAACACCATAACCATAAG 57.312 36.000 0.00 0.00 0.00 1.73
191 192 9.747898 ATAAAGAGTTGAACACCATAACCATAA 57.252 29.630 0.00 0.00 0.00 1.90
192 193 9.173021 CATAAAGAGTTGAACACCATAACCATA 57.827 33.333 0.00 0.00 0.00 2.74
193 194 7.888021 TCATAAAGAGTTGAACACCATAACCAT 59.112 33.333 0.00 0.00 0.00 3.55
194 195 7.227873 TCATAAAGAGTTGAACACCATAACCA 58.772 34.615 0.00 0.00 0.00 3.67
195 196 7.681939 TCATAAAGAGTTGAACACCATAACC 57.318 36.000 0.00 0.00 0.00 2.85
196 197 7.698130 GCATCATAAAGAGTTGAACACCATAAC 59.302 37.037 0.00 0.00 0.00 1.89
197 198 7.392953 TGCATCATAAAGAGTTGAACACCATAA 59.607 33.333 0.00 0.00 0.00 1.90
198 199 6.883756 TGCATCATAAAGAGTTGAACACCATA 59.116 34.615 0.00 0.00 0.00 2.74
199 200 5.711506 TGCATCATAAAGAGTTGAACACCAT 59.288 36.000 0.00 0.00 0.00 3.55
200 201 5.069318 TGCATCATAAAGAGTTGAACACCA 58.931 37.500 0.00 0.00 0.00 4.17
201 202 5.627499 TGCATCATAAAGAGTTGAACACC 57.373 39.130 0.00 0.00 0.00 4.16
202 203 5.858581 GGTTGCATCATAAAGAGTTGAACAC 59.141 40.000 0.00 0.00 0.00 3.32
203 204 5.048083 GGGTTGCATCATAAAGAGTTGAACA 60.048 40.000 0.00 0.00 0.00 3.18
204 205 5.183904 AGGGTTGCATCATAAAGAGTTGAAC 59.816 40.000 0.00 0.00 0.00 3.18
205 206 5.324409 AGGGTTGCATCATAAAGAGTTGAA 58.676 37.500 0.00 0.00 0.00 2.69
206 207 4.922206 AGGGTTGCATCATAAAGAGTTGA 58.078 39.130 0.00 0.00 0.00 3.18
207 208 4.701651 TGAGGGTTGCATCATAAAGAGTTG 59.298 41.667 0.00 0.00 0.00 3.16
208 209 4.922206 TGAGGGTTGCATCATAAAGAGTT 58.078 39.130 0.00 0.00 0.00 3.01
209 210 4.521146 CTGAGGGTTGCATCATAAAGAGT 58.479 43.478 0.00 0.00 0.00 3.24
210 211 3.314635 GCTGAGGGTTGCATCATAAAGAG 59.685 47.826 0.00 0.00 0.00 2.85
211 212 3.282021 GCTGAGGGTTGCATCATAAAGA 58.718 45.455 0.00 0.00 0.00 2.52
212 213 2.360165 GGCTGAGGGTTGCATCATAAAG 59.640 50.000 0.00 0.00 0.00 1.85
213 214 2.378038 GGCTGAGGGTTGCATCATAAA 58.622 47.619 0.00 0.00 0.00 1.40
214 215 1.410083 GGGCTGAGGGTTGCATCATAA 60.410 52.381 0.00 0.00 0.00 1.90
215 216 0.183492 GGGCTGAGGGTTGCATCATA 59.817 55.000 0.00 0.00 0.00 2.15
216 217 1.076485 GGGCTGAGGGTTGCATCAT 60.076 57.895 0.00 0.00 0.00 2.45
217 218 0.913934 TAGGGCTGAGGGTTGCATCA 60.914 55.000 0.00 0.00 0.00 3.07
218 219 0.179034 CTAGGGCTGAGGGTTGCATC 60.179 60.000 0.00 0.00 0.00 3.91
219 220 1.918253 CTAGGGCTGAGGGTTGCAT 59.082 57.895 0.00 0.00 0.00 3.96
220 221 2.971598 GCTAGGGCTGAGGGTTGCA 61.972 63.158 0.00 0.00 35.22 4.08
221 222 2.124529 GCTAGGGCTGAGGGTTGC 60.125 66.667 0.00 0.00 35.22 4.17
231 232 2.115343 AACTACAAGCAAGCTAGGGC 57.885 50.000 0.00 0.00 39.06 5.19
232 233 2.162408 GCAAACTACAAGCAAGCTAGGG 59.838 50.000 0.00 0.00 0.00 3.53
233 234 2.813754 TGCAAACTACAAGCAAGCTAGG 59.186 45.455 0.00 0.00 34.97 3.02
234 235 4.083110 ACATGCAAACTACAAGCAAGCTAG 60.083 41.667 0.00 0.00 42.15 3.42
235 236 3.820467 ACATGCAAACTACAAGCAAGCTA 59.180 39.130 0.00 0.00 42.15 3.32
236 237 2.624838 ACATGCAAACTACAAGCAAGCT 59.375 40.909 0.00 0.00 42.15 3.74
237 238 3.017265 ACATGCAAACTACAAGCAAGC 57.983 42.857 0.00 0.00 42.15 4.01
238 239 7.696755 TCATATACATGCAAACTACAAGCAAG 58.303 34.615 0.00 0.00 42.15 4.01
239 240 7.622893 TCATATACATGCAAACTACAAGCAA 57.377 32.000 0.00 0.00 42.15 3.91
240 241 7.255208 CCATCATATACATGCAAACTACAAGCA 60.255 37.037 0.00 0.00 43.14 3.91
241 242 7.080099 CCATCATATACATGCAAACTACAAGC 58.920 38.462 0.00 0.00 31.73 4.01
242 243 8.158169 ACCATCATATACATGCAAACTACAAG 57.842 34.615 0.00 0.00 31.73 3.16
243 244 9.620259 TTACCATCATATACATGCAAACTACAA 57.380 29.630 0.00 0.00 31.73 2.41
244 245 9.791801 ATTACCATCATATACATGCAAACTACA 57.208 29.630 0.00 0.00 31.73 2.74
271 272 9.755804 GGTAAAGTACAACTTGTAAGAGTAAGT 57.244 33.333 3.10 0.00 38.66 2.24
272 273 9.978044 AGGTAAAGTACAACTTGTAAGAGTAAG 57.022 33.333 3.10 0.00 38.66 2.34
426 427 4.346734 AAAAATGAGTCATAGCACAGCG 57.653 40.909 5.94 0.00 0.00 5.18
448 449 7.231467 AGTGTATTACCATCAAAAGTCAACCT 58.769 34.615 0.00 0.00 0.00 3.50
627 628 7.792736 AGGTACTAATGGATGGTAATAGAACCA 59.207 37.037 0.00 0.00 46.90 3.67
629 630 9.490379 CAAGGTACTAATGGATGGTAATAGAAC 57.510 37.037 0.00 0.00 38.49 3.01
641 642 3.788116 TCCCCTCAAGGTACTAATGGA 57.212 47.619 0.00 0.00 38.49 3.41
654 655 0.776810 TCCACTTGCAAATCCCCTCA 59.223 50.000 0.00 0.00 0.00 3.86
677 678 9.918630 CATTACAGGTGAATGAAGAAAGAAATT 57.081 29.630 0.00 0.00 36.57 1.82
678 679 8.526147 CCATTACAGGTGAATGAAGAAAGAAAT 58.474 33.333 0.00 0.00 36.57 2.17
681 682 5.415701 GCCATTACAGGTGAATGAAGAAAGA 59.584 40.000 0.00 0.00 36.57 2.52
682 683 5.393461 GGCCATTACAGGTGAATGAAGAAAG 60.393 44.000 0.00 0.00 36.57 2.62
683 684 4.462483 GGCCATTACAGGTGAATGAAGAAA 59.538 41.667 0.00 0.00 36.57 2.52
686 687 2.355756 CGGCCATTACAGGTGAATGAAG 59.644 50.000 2.24 0.00 36.57 3.02
689 690 1.024271 CCGGCCATTACAGGTGAATG 58.976 55.000 2.24 0.00 34.63 2.67
714 715 3.126073 CGCTAAACTATGCATGAGCTCA 58.874 45.455 20.79 20.79 42.74 4.26
722 723 6.618287 ATCTATTTTGCGCTAAACTATGCA 57.382 33.333 18.90 0.00 35.15 3.96
800 801 3.786516 TTGACGTACTGAGACAACACA 57.213 42.857 0.00 0.00 0.00 3.72
804 805 4.751060 ACAAGTTTGACGTACTGAGACAA 58.249 39.130 0.00 0.00 0.00 3.18
807 808 8.570488 TCTATAAACAAGTTTGACGTACTGAGA 58.430 33.333 8.37 0.00 34.23 3.27
815 816 7.980099 ACCCTATCTCTATAAACAAGTTTGACG 59.020 37.037 8.37 0.00 34.23 4.35
816 817 9.099454 CACCCTATCTCTATAAACAAGTTTGAC 57.901 37.037 8.37 0.00 34.23 3.18
824 825 9.578576 ACGTATAACACCCTATCTCTATAAACA 57.421 33.333 0.00 0.00 0.00 2.83
825 826 9.837525 CACGTATAACACCCTATCTCTATAAAC 57.162 37.037 0.00 0.00 0.00 2.01
827 828 9.006839 CACACGTATAACACCCTATCTCTATAA 57.993 37.037 0.00 0.00 0.00 0.98
828 829 8.159447 ACACACGTATAACACCCTATCTCTATA 58.841 37.037 0.00 0.00 0.00 1.31
844 915 8.562052 CCTCACTACACATATAACACACGTATA 58.438 37.037 0.00 0.00 0.00 1.47
845 916 7.067859 ACCTCACTACACATATAACACACGTAT 59.932 37.037 0.00 0.00 0.00 3.06
846 917 6.375174 ACCTCACTACACATATAACACACGTA 59.625 38.462 0.00 0.00 0.00 3.57
847 918 5.184479 ACCTCACTACACATATAACACACGT 59.816 40.000 0.00 0.00 0.00 4.49
848 919 5.515270 CACCTCACTACACATATAACACACG 59.485 44.000 0.00 0.00 0.00 4.49
849 920 6.627243 TCACCTCACTACACATATAACACAC 58.373 40.000 0.00 0.00 0.00 3.82
850 921 6.844097 TCACCTCACTACACATATAACACA 57.156 37.500 0.00 0.00 0.00 3.72
851 922 7.254455 GCAATCACCTCACTACACATATAACAC 60.254 40.741 0.00 0.00 0.00 3.32
852 923 6.761242 GCAATCACCTCACTACACATATAACA 59.239 38.462 0.00 0.00 0.00 2.41
853 924 6.761242 TGCAATCACCTCACTACACATATAAC 59.239 38.462 0.00 0.00 0.00 1.89
854 925 6.761242 GTGCAATCACCTCACTACACATATAA 59.239 38.462 0.00 0.00 37.24 0.98
855 926 6.280643 GTGCAATCACCTCACTACACATATA 58.719 40.000 0.00 0.00 37.24 0.86
856 927 5.118990 GTGCAATCACCTCACTACACATAT 58.881 41.667 0.00 0.00 37.24 1.78
895 966 2.028748 CACCAGAGCCCAAATTGAAAGG 60.029 50.000 0.00 0.00 0.00 3.11
936 1007 2.974489 GACGACACGAGCGGAGGAA 61.974 63.158 0.00 0.00 0.00 3.36
966 1037 1.174783 GACAGAGACGTGGCTAGGAA 58.825 55.000 0.00 0.00 0.00 3.36
1060 1140 1.657751 GCTGGGATTTGAGCGGGTTC 61.658 60.000 0.00 0.00 0.00 3.62
1439 1520 3.559069 ACCTATGCCAATCTCCAATGTG 58.441 45.455 0.00 0.00 0.00 3.21
1697 1778 6.986231 GCCTGCCAGCATATTTACTTTAAAAT 59.014 34.615 0.00 0.00 33.69 1.82
1698 1779 6.071108 TGCCTGCCAGCATATTTACTTTAAAA 60.071 34.615 0.00 0.00 38.00 1.52
1827 1908 5.048991 GGAGAAAAGCAAAGATACAACGGAA 60.049 40.000 0.00 0.00 0.00 4.30
1960 2041 7.011950 CCAAATGGGTTTTCAAAAAGGACTAAC 59.988 37.037 0.00 0.00 0.00 2.34
1991 2073 9.880064 CAGAACTTCATTATCATCTTTGCTATG 57.120 33.333 0.00 0.00 0.00 2.23
2195 2651 4.979039 TCCTGATACTTTGGGCCCTAAATA 59.021 41.667 25.70 17.05 0.00 1.40
2196 2652 3.791545 TCCTGATACTTTGGGCCCTAAAT 59.208 43.478 25.70 15.06 0.00 1.40
2687 3145 4.935352 TTTTCTGGGTTCAGTTTCCATG 57.065 40.909 0.00 0.00 41.59 3.66
2735 3193 5.790593 AGTTATTCAGCAGGAAGACGTTTA 58.209 37.500 0.00 0.00 39.30 2.01
2863 3321 4.507710 GTCCAAGCATATCAAGTGAGACA 58.492 43.478 0.00 0.00 0.00 3.41
3657 4125 1.278127 CTTCCCCTCGCCAGAAAGTTA 59.722 52.381 0.00 0.00 0.00 2.24
3669 4137 0.685660 AAACAGTCGGTCTTCCCCTC 59.314 55.000 0.00 0.00 0.00 4.30
3690 4158 6.016443 CAGGTAATAAGTCTAACTCTACCCCG 60.016 46.154 8.34 0.00 32.52 5.73
3691 4159 6.838090 ACAGGTAATAAGTCTAACTCTACCCC 59.162 42.308 8.34 0.00 32.52 4.95
3978 4452 9.898152 TCAAATTTTACCAAATTCAGGAAAAGT 57.102 25.926 4.06 0.00 41.02 2.66
4074 4548 7.672983 AGTATTGCTCGGGTCAAATATATTG 57.327 36.000 0.00 0.00 0.00 1.90
4198 4672 6.564709 TCATATGCCAAATATTCAGCAGTC 57.435 37.500 15.20 0.00 38.89 3.51
4371 4845 4.696877 TGATACTACGTCGTCCTGAAAAGA 59.303 41.667 0.00 0.00 0.00 2.52
4478 4952 1.422161 AAGTTGCTGGTGGGAGCTCT 61.422 55.000 14.64 0.00 39.90 4.09
4710 5185 1.878656 CGTGACCAGTGGAGGGAGAC 61.879 65.000 18.40 1.83 0.00 3.36
4722 5197 2.515979 ATGGTGCCAGACGTGACCA 61.516 57.895 0.00 0.00 42.60 4.02
4833 5348 1.416401 GGCCATCAAGATCGAAGGGTA 59.584 52.381 0.00 0.00 0.00 3.69
4834 5349 0.181350 GGCCATCAAGATCGAAGGGT 59.819 55.000 0.00 0.00 0.00 4.34
4835 5350 0.181114 TGGCCATCAAGATCGAAGGG 59.819 55.000 0.00 0.00 0.00 3.95
4836 5351 1.878088 CATGGCCATCAAGATCGAAGG 59.122 52.381 17.61 0.00 0.00 3.46
4837 5352 1.266175 GCATGGCCATCAAGATCGAAG 59.734 52.381 17.61 1.10 0.00 3.79
4838 5353 1.311859 GCATGGCCATCAAGATCGAA 58.688 50.000 17.61 0.00 0.00 3.71
4839 5354 3.011085 GCATGGCCATCAAGATCGA 57.989 52.632 17.61 0.00 0.00 3.59
4851 5366 0.603975 GGACCGAATAGAGGCATGGC 60.604 60.000 12.14 12.14 0.00 4.40
4852 5367 0.035458 GGGACCGAATAGAGGCATGG 59.965 60.000 0.00 0.00 0.00 3.66
4853 5368 0.035458 GGGGACCGAATAGAGGCATG 59.965 60.000 0.00 0.00 40.86 4.06
4854 5369 2.453242 GGGGACCGAATAGAGGCAT 58.547 57.895 0.00 0.00 40.86 4.40
4855 5370 3.965660 GGGGACCGAATAGAGGCA 58.034 61.111 0.00 0.00 40.86 4.75
4878 5393 3.837355 CCTCAAATCAAATAGGAGGGGG 58.163 50.000 0.00 0.00 41.12 5.40
4981 5805 8.677300 TCTCAAAAGCTCATACCACATAAATTC 58.323 33.333 0.00 0.00 0.00 2.17
5145 5979 7.965045 AGAAATAGTGAATGCGAGAGTTTAAC 58.035 34.615 0.00 0.00 0.00 2.01
5387 6291 3.532542 CTTTTTCGGATGGAGGGAGTAC 58.467 50.000 0.00 0.00 0.00 2.73
5388 6292 2.093128 GCTTTTTCGGATGGAGGGAGTA 60.093 50.000 0.00 0.00 0.00 2.59
5389 6293 1.340114 GCTTTTTCGGATGGAGGGAGT 60.340 52.381 0.00 0.00 0.00 3.85
5390 6294 1.065126 AGCTTTTTCGGATGGAGGGAG 60.065 52.381 0.00 0.00 0.00 4.30
5391 6295 0.991920 AGCTTTTTCGGATGGAGGGA 59.008 50.000 0.00 0.00 0.00 4.20
5392 6296 1.474077 CAAGCTTTTTCGGATGGAGGG 59.526 52.381 0.00 0.00 0.00 4.30
5393 6297 2.162408 GACAAGCTTTTTCGGATGGAGG 59.838 50.000 0.00 0.00 0.00 4.30
5394 6298 2.162408 GGACAAGCTTTTTCGGATGGAG 59.838 50.000 0.00 0.00 0.00 3.86
5395 6299 2.159382 GGACAAGCTTTTTCGGATGGA 58.841 47.619 0.00 0.00 0.00 3.41
5396 6300 1.202348 GGGACAAGCTTTTTCGGATGG 59.798 52.381 0.00 0.00 0.00 3.51
5397 6301 1.885887 TGGGACAAGCTTTTTCGGATG 59.114 47.619 0.00 0.00 31.92 3.51
5398 6302 2.286365 TGGGACAAGCTTTTTCGGAT 57.714 45.000 0.00 0.00 31.92 4.18
5399 6303 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
5408 6312 5.943695 TTGAGGAACAAACTTGGGACAAGC 61.944 45.833 8.79 0.00 38.59 4.01
5409 6313 3.699038 TTGAGGAACAAACTTGGGACAAG 59.301 43.478 7.41 7.41 38.59 3.16
5410 6314 3.702792 TTGAGGAACAAACTTGGGACAA 58.297 40.909 0.00 0.00 38.59 3.18
5411 6315 3.374042 TTGAGGAACAAACTTGGGACA 57.626 42.857 0.00 0.00 35.39 4.02
5421 6325 7.280876 GTGCTAGATACATCATTTGAGGAACAA 59.719 37.037 0.00 0.00 36.65 2.83
5422 6326 6.763135 GTGCTAGATACATCATTTGAGGAACA 59.237 38.462 0.00 0.00 0.00 3.18
5423 6327 6.989169 AGTGCTAGATACATCATTTGAGGAAC 59.011 38.462 0.00 0.00 0.00 3.62
5424 6328 7.129457 AGTGCTAGATACATCATTTGAGGAA 57.871 36.000 0.00 0.00 0.00 3.36
5425 6329 6.737720 AGTGCTAGATACATCATTTGAGGA 57.262 37.500 0.00 0.00 0.00 3.71
5426 6330 8.147058 AGTTAGTGCTAGATACATCATTTGAGG 58.853 37.037 0.00 0.00 0.00 3.86
5427 6331 9.539825 AAGTTAGTGCTAGATACATCATTTGAG 57.460 33.333 0.00 0.00 0.00 3.02
5428 6332 9.317936 CAAGTTAGTGCTAGATACATCATTTGA 57.682 33.333 0.00 0.00 0.00 2.69
5429 6333 8.554528 CCAAGTTAGTGCTAGATACATCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
5430 6334 8.267894 ACCAAGTTAGTGCTAGATACATCATTT 58.732 33.333 0.00 0.00 0.00 2.32
5431 6335 7.712639 CACCAAGTTAGTGCTAGATACATCATT 59.287 37.037 0.00 0.00 0.00 2.57
5432 6336 7.212976 CACCAAGTTAGTGCTAGATACATCAT 58.787 38.462 0.00 0.00 0.00 2.45
5433 6337 6.573434 CACCAAGTTAGTGCTAGATACATCA 58.427 40.000 0.00 0.00 0.00 3.07
5445 6349 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
5446 6350 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
5447 6351 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
5448 6352 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
5449 6353 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
5450 6354 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
5451 6355 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
5452 6356 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
5453 6357 5.366477 TCTCAAATGGATGTATCTAGCACCA 59.634 40.000 0.00 0.00 0.00 4.17
5454 6358 5.858381 TCTCAAATGGATGTATCTAGCACC 58.142 41.667 0.00 0.00 0.00 5.01
5455 6359 6.644592 GTCTCTCAAATGGATGTATCTAGCAC 59.355 42.308 0.00 0.00 0.00 4.40
5456 6360 6.324770 TGTCTCTCAAATGGATGTATCTAGCA 59.675 38.462 0.00 0.00 0.00 3.49
5457 6361 6.753180 TGTCTCTCAAATGGATGTATCTAGC 58.247 40.000 0.00 0.00 0.00 3.42
5458 6362 7.384660 GCTTGTCTCTCAAATGGATGTATCTAG 59.615 40.741 0.00 0.00 35.48 2.43
5459 6363 7.070447 AGCTTGTCTCTCAAATGGATGTATCTA 59.930 37.037 0.00 0.00 35.48 1.98
5460 6364 6.054295 GCTTGTCTCTCAAATGGATGTATCT 58.946 40.000 0.00 0.00 35.48 1.98
5461 6365 6.054295 AGCTTGTCTCTCAAATGGATGTATC 58.946 40.000 0.00 0.00 35.48 2.24
5462 6366 5.999044 AGCTTGTCTCTCAAATGGATGTAT 58.001 37.500 0.00 0.00 35.48 2.29
5463 6367 5.426689 AGCTTGTCTCTCAAATGGATGTA 57.573 39.130 0.00 0.00 35.48 2.29
5464 6368 4.298103 AGCTTGTCTCTCAAATGGATGT 57.702 40.909 0.00 0.00 35.48 3.06
5465 6369 5.640189 AAAGCTTGTCTCTCAAATGGATG 57.360 39.130 0.00 0.00 35.48 3.51
5466 6370 6.569226 CGAAAAAGCTTGTCTCTCAAATGGAT 60.569 38.462 0.00 0.00 35.48 3.41
5467 6371 5.277974 CGAAAAAGCTTGTCTCTCAAATGGA 60.278 40.000 0.00 0.00 35.48 3.41
5468 6372 4.913924 CGAAAAAGCTTGTCTCTCAAATGG 59.086 41.667 0.00 0.00 35.48 3.16
5469 6373 4.913924 CCGAAAAAGCTTGTCTCTCAAATG 59.086 41.667 0.00 0.00 35.48 2.32
5470 6374 4.821805 TCCGAAAAAGCTTGTCTCTCAAAT 59.178 37.500 0.00 0.00 35.48 2.32
5471 6375 4.035208 GTCCGAAAAAGCTTGTCTCTCAAA 59.965 41.667 0.00 0.00 35.48 2.69
5472 6376 3.560068 GTCCGAAAAAGCTTGTCTCTCAA 59.440 43.478 0.00 0.00 34.61 3.02
5473 6377 3.131396 GTCCGAAAAAGCTTGTCTCTCA 58.869 45.455 0.00 0.00 0.00 3.27
5474 6378 2.155924 CGTCCGAAAAAGCTTGTCTCTC 59.844 50.000 0.00 0.00 0.00 3.20
5475 6379 2.135933 CGTCCGAAAAAGCTTGTCTCT 58.864 47.619 0.00 0.00 0.00 3.10
5476 6380 1.194772 CCGTCCGAAAAAGCTTGTCTC 59.805 52.381 0.00 0.00 0.00 3.36
5477 6381 1.202604 TCCGTCCGAAAAAGCTTGTCT 60.203 47.619 0.00 0.00 0.00 3.41
5478 6382 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
5479 6383 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
5480 6384 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
5481 6385 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
5482 6386 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
5483 6387 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
5484 6388 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
5485 6389 1.547372 CTACTCCCTCCGTCCGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
5486 6390 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
5487 6391 1.318158 GCTACTCCCTCCGTCCGAAA 61.318 60.000 0.00 0.00 0.00 3.46
5488 6392 1.751927 GCTACTCCCTCCGTCCGAA 60.752 63.158 0.00 0.00 0.00 4.30
5489 6393 1.340399 TAGCTACTCCCTCCGTCCGA 61.340 60.000 0.00 0.00 0.00 4.55
5490 6394 0.885596 CTAGCTACTCCCTCCGTCCG 60.886 65.000 0.00 0.00 0.00 4.79
5491 6395 0.183252 ACTAGCTACTCCCTCCGTCC 59.817 60.000 0.00 0.00 0.00 4.79
5492 6396 1.677052 CAACTAGCTACTCCCTCCGTC 59.323 57.143 0.00 0.00 0.00 4.79
5493 6397 1.765230 CAACTAGCTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
5494 6398 0.386113 GCAACTAGCTACTCCCTCCG 59.614 60.000 0.00 0.00 41.15 4.63
5495 6399 1.486211 TGCAACTAGCTACTCCCTCC 58.514 55.000 0.00 0.00 45.94 4.30
5496 6400 3.462021 CATTGCAACTAGCTACTCCCTC 58.538 50.000 0.00 0.00 45.94 4.30
5497 6401 2.171448 CCATTGCAACTAGCTACTCCCT 59.829 50.000 0.00 0.00 45.94 4.20
5498 6402 2.092914 ACCATTGCAACTAGCTACTCCC 60.093 50.000 0.00 0.00 45.94 4.30
5499 6403 2.939103 CACCATTGCAACTAGCTACTCC 59.061 50.000 0.00 0.00 45.94 3.85
5500 6404 3.600388 ACACCATTGCAACTAGCTACTC 58.400 45.455 0.00 0.00 45.94 2.59
5501 6405 3.703001 ACACCATTGCAACTAGCTACT 57.297 42.857 0.00 0.00 45.94 2.57
5766 6681 2.626266 TGTATGTGTATGTAGGGAGCCG 59.374 50.000 0.00 0.00 0.00 5.52
5867 6819 4.162690 GACTACAGCAGGCGGGGG 62.163 72.222 0.00 0.00 0.00 5.40
5913 6914 1.227823 CACCACGTTGAAGCTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
6118 7233 1.390565 CTCTGTCGTTCCTATCCCGT 58.609 55.000 0.00 0.00 0.00 5.28
6173 7298 0.187361 CACAAAACCCCCTCCTTCCA 59.813 55.000 0.00 0.00 0.00 3.53
6351 7484 4.028852 TCGTTGAGTCTTCGACCATATG 57.971 45.455 0.00 0.00 34.71 1.78
6534 7667 9.693739 TTAGGCATTGTAAGAATAGGAATTTGA 57.306 29.630 0.00 0.00 0.00 2.69
6930 10403 4.917385 TGCTTATAACAGGAGGAAAAGCA 58.083 39.130 2.93 2.93 43.86 3.91
7155 10631 6.238211 GCACTCTGCACGTAAAGAATTATGAT 60.238 38.462 0.00 0.00 44.26 2.45
7531 11007 6.147164 GTGACTGAAAAATGTTCCGAGTATCA 59.853 38.462 0.00 0.00 33.17 2.15
7840 11317 4.688413 CAGAAAGAGGTCTAGCTTGTGAAC 59.312 45.833 0.00 0.00 0.00 3.18
7937 11416 8.885494 TTACATTTTCCAGAAGTCCAAAAATG 57.115 30.769 14.12 14.12 45.79 2.32
8131 11694 4.641396 TCAGCTGCACTTAGTGTATGTTT 58.359 39.130 14.23 0.00 35.75 2.83
8274 12324 0.682209 CCCAATGCTCTGTTCCCCAG 60.682 60.000 0.00 0.00 42.97 4.45
8275 12325 1.139498 TCCCAATGCTCTGTTCCCCA 61.139 55.000 0.00 0.00 0.00 4.96
8276 12326 0.394899 CTCCCAATGCTCTGTTCCCC 60.395 60.000 0.00 0.00 0.00 4.81
8277 12327 0.394899 CCTCCCAATGCTCTGTTCCC 60.395 60.000 0.00 0.00 0.00 3.97
8278 12328 0.620556 TCCTCCCAATGCTCTGTTCC 59.379 55.000 0.00 0.00 0.00 3.62
8279 12329 1.280421 AGTCCTCCCAATGCTCTGTTC 59.720 52.381 0.00 0.00 0.00 3.18
8280 12330 1.004044 CAGTCCTCCCAATGCTCTGTT 59.996 52.381 0.00 0.00 0.00 3.16
8281 12331 0.617413 CAGTCCTCCCAATGCTCTGT 59.383 55.000 0.00 0.00 0.00 3.41
8282 12332 0.107312 CCAGTCCTCCCAATGCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
8283 12333 0.252881 TCCAGTCCTCCCAATGCTCT 60.253 55.000 0.00 0.00 0.00 4.09
8284 12334 0.179936 CTCCAGTCCTCCCAATGCTC 59.820 60.000 0.00 0.00 0.00 4.26
8285 12335 1.919600 GCTCCAGTCCTCCCAATGCT 61.920 60.000 0.00 0.00 0.00 3.79
8286 12336 1.452833 GCTCCAGTCCTCCCAATGC 60.453 63.158 0.00 0.00 0.00 3.56
8287 12337 0.107312 CAGCTCCAGTCCTCCCAATG 60.107 60.000 0.00 0.00 0.00 2.82
8288 12338 0.252881 TCAGCTCCAGTCCTCCCAAT 60.253 55.000 0.00 0.00 0.00 3.16
8289 12339 0.252881 ATCAGCTCCAGTCCTCCCAA 60.253 55.000 0.00 0.00 0.00 4.12
8290 12340 0.689080 GATCAGCTCCAGTCCTCCCA 60.689 60.000 0.00 0.00 0.00 4.37
8291 12341 1.406860 GGATCAGCTCCAGTCCTCCC 61.407 65.000 0.00 0.00 44.26 4.30
8292 12342 1.743321 CGGATCAGCTCCAGTCCTCC 61.743 65.000 0.00 0.00 45.24 4.30
8293 12343 1.739049 CGGATCAGCTCCAGTCCTC 59.261 63.158 0.00 0.00 45.24 3.71
8294 12344 2.430610 GCGGATCAGCTCCAGTCCT 61.431 63.158 10.86 0.00 45.24 3.85
8295 12345 2.107953 GCGGATCAGCTCCAGTCC 59.892 66.667 10.86 0.00 45.24 3.85
8296 12346 3.215245 AGCGGATCAGCTCCAGTC 58.785 61.111 15.09 0.00 45.67 3.51
8510 12564 2.598394 CTGCCACCACCACCAAGG 60.598 66.667 0.00 0.00 45.67 3.61
8764 12818 1.495148 TCCATACCCACAACACCAACA 59.505 47.619 0.00 0.00 0.00 3.33
8808 12862 1.528824 CGGACTCATCCAAGGGCAT 59.471 57.895 0.00 0.00 46.67 4.40
8882 12936 1.675641 GGCCAAGGATGTGAAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
8936 12990 1.304217 ACGCCTCTCCCTTCTCGAA 60.304 57.895 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.