Multiple sequence alignment - TraesCS6B01G217100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G217100 chr6B 100.000 3037 0 0 1 3037 298822648 298819612 0.000000e+00 5609.0
1 TraesCS6B01G217100 chr6B 91.288 1848 137 14 477 2315 667779897 667778065 0.000000e+00 2499.0
2 TraesCS6B01G217100 chr6B 87.500 120 15 0 5 124 667780007 667779888 4.080000e-29 139.0
3 TraesCS6B01G217100 chr6D 96.249 1893 62 4 477 2367 163336327 163338212 0.000000e+00 3094.0
4 TraesCS6B01G217100 chr6D 92.399 842 54 6 477 1317 441768405 441767573 0.000000e+00 1192.0
5 TraesCS6B01G217100 chr6D 94.769 497 23 3 2380 2876 163338197 163338690 0.000000e+00 771.0
6 TraesCS6B01G217100 chr6D 95.082 427 21 0 1634 2060 441759829 441759403 0.000000e+00 673.0
7 TraesCS6B01G217100 chr6D 92.378 328 25 0 1313 1640 441765306 441764979 4.580000e-128 468.0
8 TraesCS6B01G217100 chr6D 88.660 194 18 3 2528 2721 441752015 441751826 1.820000e-57 233.0
9 TraesCS6B01G217100 chr6D 93.548 124 8 0 1 124 163336213 163336336 5.170000e-43 185.0
10 TraesCS6B01G217100 chr6D 87.500 120 15 0 5 124 441768515 441768396 4.080000e-29 139.0
11 TraesCS6B01G217100 chr6A 91.194 1851 131 17 477 2315 591021542 591019712 0.000000e+00 2486.0
12 TraesCS6B01G217100 chr6A 98.047 973 18 1 477 1449 223556773 223557744 0.000000e+00 1690.0
13 TraesCS6B01G217100 chr6A 97.813 686 15 0 1445 2130 223560010 223560695 0.000000e+00 1184.0
14 TraesCS6B01G217100 chr6A 92.848 811 36 11 2223 3033 223561006 223561794 0.000000e+00 1157.0
15 TraesCS6B01G217100 chr6A 98.864 352 4 0 127 478 409140761 409140410 1.990000e-176 628.0
16 TraesCS6B01G217100 chr6A 84.071 113 18 0 5 117 591023306 591023194 3.200000e-20 110.0
17 TraesCS6B01G217100 chr6A 98.039 51 1 0 2155 2205 223560698 223560748 4.170000e-14 89.8
18 TraesCS6B01G217100 chr5A 98.603 358 4 1 127 484 412524128 412524484 1.540000e-177 632.0
19 TraesCS6B01G217100 chr5A 98.864 352 4 0 127 478 82310296 82309945 1.990000e-176 628.0
20 TraesCS6B01G217100 chr7A 98.864 352 4 0 127 478 572573552 572573201 1.990000e-176 628.0
21 TraesCS6B01G217100 chr5B 98.864 352 4 0 127 478 205574781 205574430 1.990000e-176 628.0
22 TraesCS6B01G217100 chr5B 98.864 352 4 0 127 478 443700634 443700283 1.990000e-176 628.0
23 TraesCS6B01G217100 chr3D 98.864 352 4 0 127 478 369408679 369409030 1.990000e-176 628.0
24 TraesCS6B01G217100 chr1B 98.864 352 4 0 127 478 151843297 151842946 1.990000e-176 628.0
25 TraesCS6B01G217100 chr1A 98.864 352 4 0 127 478 127927082 127926731 1.990000e-176 628.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G217100 chr6B 298819612 298822648 3036 True 5609.000000 5609 100.000000 1 3037 1 chr6B.!!$R1 3036
1 TraesCS6B01G217100 chr6B 667778065 667780007 1942 True 1319.000000 2499 89.394000 5 2315 2 chr6B.!!$R2 2310
2 TraesCS6B01G217100 chr6D 163336213 163338690 2477 False 1350.000000 3094 94.855333 1 2876 3 chr6D.!!$F1 2875
3 TraesCS6B01G217100 chr6D 441764979 441768515 3536 True 599.666667 1192 90.759000 5 1640 3 chr6D.!!$R3 1635
4 TraesCS6B01G217100 chr6A 591019712 591023306 3594 True 1298.000000 2486 87.632500 5 2315 2 chr6A.!!$R2 2310
5 TraesCS6B01G217100 chr6A 223556773 223561794 5021 False 1030.200000 1690 96.686750 477 3033 4 chr6A.!!$F1 2556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.108804 TCGTCTGAGATGGTTTCGGC 60.109 55.0 1.24 0.0 0.00 5.54 F
385 1534 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.0 0.00 0.0 40.48 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 7935 0.464554 CGGGCTTCTTTCCCTGGATC 60.465 60.0 0.00 0.00 41.69 3.36 R
2343 8550 0.101040 CACACACACACTGGCCAAAG 59.899 55.0 7.01 4.44 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.050159 CCAACTTTAGCAGGCAAAATGAAAC 60.050 40.000 0.00 0.00 0.00 2.78
87 88 2.952310 GGCAAACAACTCTCTTTCTGGT 59.048 45.455 0.00 0.00 0.00 4.00
105 106 4.293634 TCTGGTGAAATTCCCTGGGATTTA 59.706 41.667 17.93 1.34 0.00 1.40
106 107 5.043432 TCTGGTGAAATTCCCTGGGATTTAT 60.043 40.000 17.93 4.18 0.00 1.40
117 118 5.196779 TCCCTGGGATTTATTGGGTATTTCA 59.803 40.000 12.53 0.00 38.95 2.69
118 119 5.304357 CCCTGGGATTTATTGGGTATTTCAC 59.696 44.000 7.01 0.00 33.49 3.18
119 120 5.896678 CCTGGGATTTATTGGGTATTTCACA 59.103 40.000 0.00 0.00 0.00 3.58
120 121 6.040842 CCTGGGATTTATTGGGTATTTCACAG 59.959 42.308 0.00 0.00 33.88 3.66
121 122 5.896678 TGGGATTTATTGGGTATTTCACAGG 59.103 40.000 0.00 0.00 0.00 4.00
122 123 5.897250 GGGATTTATTGGGTATTTCACAGGT 59.103 40.000 0.00 0.00 0.00 4.00
123 124 7.064229 GGGATTTATTGGGTATTTCACAGGTA 58.936 38.462 0.00 0.00 0.00 3.08
124 125 7.562088 GGGATTTATTGGGTATTTCACAGGTAA 59.438 37.037 0.00 0.00 0.00 2.85
125 126 8.410912 GGATTTATTGGGTATTTCACAGGTAAC 58.589 37.037 0.00 0.00 0.00 2.50
126 127 8.887264 ATTTATTGGGTATTTCACAGGTAACA 57.113 30.769 0.00 0.00 41.41 2.41
127 128 7.931578 TTATTGGGTATTTCACAGGTAACAG 57.068 36.000 0.00 0.00 41.41 3.16
128 129 5.570205 TTGGGTATTTCACAGGTAACAGA 57.430 39.130 0.00 0.00 41.41 3.41
129 130 5.772393 TGGGTATTTCACAGGTAACAGAT 57.228 39.130 0.00 0.00 41.41 2.90
130 131 6.877668 TGGGTATTTCACAGGTAACAGATA 57.122 37.500 0.00 0.00 41.41 1.98
131 132 6.884832 TGGGTATTTCACAGGTAACAGATAG 58.115 40.000 0.00 0.00 41.41 2.08
132 133 6.670464 TGGGTATTTCACAGGTAACAGATAGA 59.330 38.462 0.00 0.00 41.41 1.98
133 134 7.147724 TGGGTATTTCACAGGTAACAGATAGAG 60.148 40.741 0.00 0.00 41.41 2.43
134 135 7.147707 GGGTATTTCACAGGTAACAGATAGAGT 60.148 40.741 0.00 0.00 41.41 3.24
135 136 8.258708 GGTATTTCACAGGTAACAGATAGAGTT 58.741 37.037 0.00 0.00 41.41 3.01
136 137 9.088512 GTATTTCACAGGTAACAGATAGAGTTG 57.911 37.037 0.00 0.00 41.41 3.16
137 138 5.661056 TCACAGGTAACAGATAGAGTTGG 57.339 43.478 0.00 0.00 41.41 3.77
138 139 4.466370 TCACAGGTAACAGATAGAGTTGGG 59.534 45.833 0.00 0.00 41.41 4.12
139 140 3.775316 ACAGGTAACAGATAGAGTTGGGG 59.225 47.826 0.00 0.00 41.41 4.96
140 141 3.775316 CAGGTAACAGATAGAGTTGGGGT 59.225 47.826 0.00 0.00 41.41 4.95
141 142 4.960469 CAGGTAACAGATAGAGTTGGGGTA 59.040 45.833 0.00 0.00 41.41 3.69
142 143 5.069251 CAGGTAACAGATAGAGTTGGGGTAG 59.931 48.000 0.00 0.00 41.41 3.18
143 144 4.202233 GGTAACAGATAGAGTTGGGGTAGC 60.202 50.000 0.00 0.00 0.00 3.58
144 145 3.116096 ACAGATAGAGTTGGGGTAGCA 57.884 47.619 0.00 0.00 0.00 3.49
145 146 2.766828 ACAGATAGAGTTGGGGTAGCAC 59.233 50.000 0.00 0.00 0.00 4.40
146 147 2.103263 CAGATAGAGTTGGGGTAGCACC 59.897 54.545 0.00 0.00 37.60 5.01
147 148 2.116238 GATAGAGTTGGGGTAGCACCA 58.884 52.381 7.49 0.00 41.02 4.17
148 149 2.032965 TAGAGTTGGGGTAGCACCAA 57.967 50.000 9.86 9.86 45.25 3.67
153 154 2.685106 TTGGGGTAGCACCAATTGAA 57.315 45.000 7.12 0.00 42.75 2.69
154 155 2.214376 TGGGGTAGCACCAATTGAAG 57.786 50.000 7.12 0.00 41.02 3.02
155 156 1.707989 TGGGGTAGCACCAATTGAAGA 59.292 47.619 7.12 0.00 41.02 2.87
156 157 2.290896 TGGGGTAGCACCAATTGAAGAG 60.291 50.000 7.12 0.00 41.02 2.85
157 158 2.026262 GGGGTAGCACCAATTGAAGAGA 60.026 50.000 7.12 0.00 41.02 3.10
158 159 3.561313 GGGGTAGCACCAATTGAAGAGAA 60.561 47.826 7.12 0.00 41.02 2.87
159 160 3.691609 GGGTAGCACCAATTGAAGAGAAG 59.308 47.826 7.12 0.00 41.02 2.85
160 161 3.127721 GGTAGCACCAATTGAAGAGAAGC 59.872 47.826 7.12 0.92 38.42 3.86
161 162 3.151912 AGCACCAATTGAAGAGAAGCT 57.848 42.857 7.12 3.13 0.00 3.74
162 163 3.494332 AGCACCAATTGAAGAGAAGCTT 58.506 40.909 7.12 0.00 40.25 3.74
163 164 3.255149 AGCACCAATTGAAGAGAAGCTTG 59.745 43.478 2.10 0.00 36.83 4.01
164 165 3.005155 GCACCAATTGAAGAGAAGCTTGT 59.995 43.478 2.10 0.00 36.83 3.16
165 166 4.791974 CACCAATTGAAGAGAAGCTTGTC 58.208 43.478 15.54 15.54 36.83 3.18
166 167 3.823304 ACCAATTGAAGAGAAGCTTGTCC 59.177 43.478 19.26 6.46 36.83 4.02
167 168 3.822735 CCAATTGAAGAGAAGCTTGTCCA 59.177 43.478 19.26 8.99 36.83 4.02
168 169 4.279169 CCAATTGAAGAGAAGCTTGTCCAA 59.721 41.667 19.26 16.61 36.83 3.53
169 170 5.218139 CAATTGAAGAGAAGCTTGTCCAAC 58.782 41.667 19.26 11.55 36.83 3.77
170 171 3.558931 TGAAGAGAAGCTTGTCCAACA 57.441 42.857 19.26 13.75 36.83 3.33
171 172 4.090761 TGAAGAGAAGCTTGTCCAACAT 57.909 40.909 19.26 0.00 36.83 2.71
172 173 4.067896 TGAAGAGAAGCTTGTCCAACATC 58.932 43.478 19.26 10.83 36.83 3.06
173 174 2.693069 AGAGAAGCTTGTCCAACATCG 58.307 47.619 19.26 0.00 0.00 3.84
174 175 2.037772 AGAGAAGCTTGTCCAACATCGT 59.962 45.455 19.26 0.00 0.00 3.73
175 176 2.413453 GAGAAGCTTGTCCAACATCGTC 59.587 50.000 12.50 0.00 0.00 4.20
176 177 2.037772 AGAAGCTTGTCCAACATCGTCT 59.962 45.455 2.10 0.00 0.00 4.18
177 178 1.800805 AGCTTGTCCAACATCGTCTG 58.199 50.000 0.00 0.00 0.00 3.51
178 179 1.344438 AGCTTGTCCAACATCGTCTGA 59.656 47.619 0.00 0.00 0.00 3.27
179 180 1.728971 GCTTGTCCAACATCGTCTGAG 59.271 52.381 0.00 0.00 0.00 3.35
180 181 2.610479 GCTTGTCCAACATCGTCTGAGA 60.610 50.000 0.00 0.00 0.00 3.27
181 182 3.854666 CTTGTCCAACATCGTCTGAGAT 58.145 45.455 0.00 0.00 0.00 2.75
185 186 2.567169 TCCAACATCGTCTGAGATGGTT 59.433 45.455 16.20 0.00 45.46 3.67
186 187 3.007940 TCCAACATCGTCTGAGATGGTTT 59.992 43.478 16.20 0.00 45.46 3.27
187 188 3.372206 CCAACATCGTCTGAGATGGTTTC 59.628 47.826 16.20 0.00 45.46 2.78
188 189 3.061295 CAACATCGTCTGAGATGGTTTCG 59.939 47.826 16.20 0.00 45.46 3.46
189 190 2.196749 CATCGTCTGAGATGGTTTCGG 58.803 52.381 1.24 0.00 43.07 4.30
190 191 0.108804 TCGTCTGAGATGGTTTCGGC 60.109 55.000 1.24 0.00 0.00 5.54
191 192 0.389817 CGTCTGAGATGGTTTCGGCA 60.390 55.000 0.00 0.00 0.00 5.69
192 193 1.740380 CGTCTGAGATGGTTTCGGCAT 60.740 52.381 0.00 0.00 0.00 4.40
193 194 2.481276 CGTCTGAGATGGTTTCGGCATA 60.481 50.000 0.00 0.00 0.00 3.14
194 195 3.733337 GTCTGAGATGGTTTCGGCATAT 58.267 45.455 0.00 0.00 0.00 1.78
195 196 3.743396 GTCTGAGATGGTTTCGGCATATC 59.257 47.826 0.00 0.00 0.00 1.63
196 197 3.070018 CTGAGATGGTTTCGGCATATCC 58.930 50.000 0.00 0.00 0.00 2.59
197 198 2.437651 TGAGATGGTTTCGGCATATCCA 59.562 45.455 0.00 0.00 34.01 3.41
198 199 3.070018 GAGATGGTTTCGGCATATCCAG 58.930 50.000 0.00 0.00 34.01 3.86
199 200 1.537202 GATGGTTTCGGCATATCCAGC 59.463 52.381 0.00 0.00 34.01 4.85
200 201 0.813610 TGGTTTCGGCATATCCAGCG 60.814 55.000 0.00 0.00 34.01 5.18
201 202 1.279840 GTTTCGGCATATCCAGCGC 59.720 57.895 0.00 0.00 34.01 5.92
202 203 1.153269 TTTCGGCATATCCAGCGCA 60.153 52.632 11.47 0.00 34.01 6.09
203 204 1.159713 TTTCGGCATATCCAGCGCAG 61.160 55.000 11.47 0.00 34.01 5.18
204 205 2.994387 TTCGGCATATCCAGCGCAGG 62.994 60.000 13.53 13.53 34.01 4.85
205 206 3.360340 GGCATATCCAGCGCAGGC 61.360 66.667 15.03 2.94 40.37 4.85
206 207 3.360340 GCATATCCAGCGCAGGCC 61.360 66.667 15.03 0.00 41.24 5.19
207 208 2.429058 CATATCCAGCGCAGGCCT 59.571 61.111 15.03 0.00 41.24 5.19
208 209 1.670406 CATATCCAGCGCAGGCCTC 60.670 63.158 15.03 0.00 41.24 4.70
209 210 2.888447 ATATCCAGCGCAGGCCTCC 61.888 63.158 15.03 0.00 41.24 4.30
213 214 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
214 215 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
216 217 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
217 218 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
218 219 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
219 220 2.123632 AGGCCTCCAGAAGCTCCA 59.876 61.111 0.00 0.00 0.00 3.86
220 221 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
221 222 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
222 223 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
223 224 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
224 225 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
225 226 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
226 227 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
227 228 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
228 229 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
229 230 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
230 231 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
231 232 1.617018 AAGCTCCAGTGCATAGCGGA 61.617 55.000 0.00 0.00 41.19 5.54
232 233 1.070445 GCTCCAGTGCATAGCGGAT 59.930 57.895 0.00 0.00 0.00 4.18
233 234 1.226686 GCTCCAGTGCATAGCGGATG 61.227 60.000 0.00 0.00 38.73 3.51
234 235 0.602106 CTCCAGTGCATAGCGGATGG 60.602 60.000 0.00 0.00 35.91 3.51
235 236 2.256591 CCAGTGCATAGCGGATGGC 61.257 63.158 0.00 0.00 44.05 4.40
245 246 1.008079 GCGGATGGCTAAAGCATGC 60.008 57.895 10.51 10.51 44.36 4.06
246 247 1.280746 CGGATGGCTAAAGCATGCG 59.719 57.895 13.01 8.67 44.36 4.73
247 248 1.656441 GGATGGCTAAAGCATGCGG 59.344 57.895 13.01 5.39 44.36 5.69
250 251 0.181114 ATGGCTAAAGCATGCGGAGA 59.819 50.000 13.01 0.00 44.36 3.71
252 253 1.312815 GGCTAAAGCATGCGGAGAAT 58.687 50.000 13.01 0.00 44.36 2.40
256 257 1.825090 AAAGCATGCGGAGAATGTCA 58.175 45.000 13.01 0.00 0.00 3.58
261 262 2.897436 CATGCGGAGAATGTCAAGAGA 58.103 47.619 0.00 0.00 0.00 3.10
265 266 1.472376 CGGAGAATGTCAAGAGAGGGC 60.472 57.143 0.00 0.00 0.00 5.19
266 267 1.472376 GGAGAATGTCAAGAGAGGGCG 60.472 57.143 0.00 0.00 0.00 6.13
268 269 0.462759 GAATGTCAAGAGAGGGCGGG 60.463 60.000 0.00 0.00 0.00 6.13
269 270 1.915078 AATGTCAAGAGAGGGCGGGG 61.915 60.000 0.00 0.00 0.00 5.73
275 276 2.838693 GAGAGGGCGGGGTAGACC 60.839 72.222 0.00 0.00 40.48 3.85
286 287 3.277142 GGGGTAGACCGAATTTGACAT 57.723 47.619 0.00 0.00 41.60 3.06
287 288 2.943033 GGGGTAGACCGAATTTGACATG 59.057 50.000 0.00 0.00 41.60 3.21
288 289 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
289 290 2.943033 GGTAGACCGAATTTGACATGGG 59.057 50.000 0.00 0.00 0.00 4.00
291 292 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
292 293 2.017049 GACCGAATTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
293 294 1.633432 ACCGAATTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
294 295 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
296 297 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
297 298 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
298 299 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
299 300 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
301 302 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
302 303 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
304 1453 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
311 1460 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
312 1461 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
314 1463 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
315 1464 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
320 1469 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
325 1474 2.045885 AGAGACCTGAAGGATTGGGGTA 59.954 50.000 2.62 0.00 38.94 3.69
327 1476 3.049344 AGACCTGAAGGATTGGGGTATC 58.951 50.000 2.62 0.00 38.94 2.24
328 1477 2.777692 GACCTGAAGGATTGGGGTATCA 59.222 50.000 2.62 0.00 38.94 2.15
329 1478 2.509964 ACCTGAAGGATTGGGGTATCAC 59.490 50.000 2.62 0.00 38.94 3.06
330 1479 2.158608 CCTGAAGGATTGGGGTATCACC 60.159 54.545 0.00 0.00 37.39 4.02
331 1480 2.509548 CTGAAGGATTGGGGTATCACCA 59.490 50.000 0.00 0.00 41.02 4.17
340 1489 2.771943 TGGGGTATCACCAAAGAGCTAG 59.228 50.000 0.00 0.00 41.02 3.42
341 1490 2.485657 GGGGTATCACCAAAGAGCTAGC 60.486 54.545 6.62 6.62 41.02 3.42
343 1492 3.641906 GGGTATCACCAAAGAGCTAGCTA 59.358 47.826 19.38 0.00 41.02 3.32
344 1493 4.284746 GGGTATCACCAAAGAGCTAGCTAT 59.715 45.833 19.38 12.73 41.02 2.97
345 1494 5.233988 GGTATCACCAAAGAGCTAGCTATG 58.766 45.833 19.38 16.41 38.42 2.23
346 1495 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
347 1496 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
348 1497 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
350 1499 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
351 1500 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
352 1501 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
353 1502 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
354 1503 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
356 1505 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
361 1510 2.531428 TGGACAGGGGTGCATGGA 60.531 61.111 0.00 0.00 40.73 3.41
362 1511 2.159490 TGGACAGGGGTGCATGGAA 61.159 57.895 0.00 0.00 40.73 3.53
364 1513 2.036256 ACAGGGGTGCATGGAAGC 59.964 61.111 0.00 0.00 0.00 3.86
365 1514 2.357836 CAGGGGTGCATGGAAGCT 59.642 61.111 0.00 0.00 34.99 3.74
367 1516 1.304713 AGGGGTGCATGGAAGCTTG 60.305 57.895 2.10 0.00 34.99 4.01
368 1517 2.575461 GGGTGCATGGAAGCTTGC 59.425 61.111 11.58 11.58 39.33 4.01
369 1518 1.980772 GGGTGCATGGAAGCTTGCT 60.981 57.895 19.34 1.86 39.60 3.91
370 1519 0.680921 GGGTGCATGGAAGCTTGCTA 60.681 55.000 19.34 6.07 39.60 3.49
371 1520 1.396653 GGTGCATGGAAGCTTGCTAT 58.603 50.000 19.34 8.14 39.60 2.97
372 1521 1.336125 GGTGCATGGAAGCTTGCTATC 59.664 52.381 19.34 8.04 39.60 2.08
373 1522 1.336125 GTGCATGGAAGCTTGCTATCC 59.664 52.381 19.34 6.99 39.60 2.59
379 1528 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
380 1529 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
381 1530 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
383 1532 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
384 1533 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
385 1534 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
386 1535 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
388 1537 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
389 1538 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
390 1539 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
391 1540 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
392 1541 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
393 1542 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
394 1543 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
403 1552 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
405 1554 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
406 1555 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
407 1556 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
408 1557 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
409 1558 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
410 1559 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
411 1560 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
412 1561 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
415 1564 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
416 1565 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
418 1567 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
419 1568 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
421 1570 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
422 1571 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
423 1572 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
424 1573 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
425 1574 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
426 1575 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
427 1576 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
428 1577 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
430 1579 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
431 1580 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
432 1581 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
433 1582 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
435 1584 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
436 1585 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
437 1586 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
438 1587 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
439 1588 0.909623 TCTAGCCTACCCCAACTTGC 59.090 55.000 0.00 0.00 0.00 4.01
451 1600 3.923017 CCAACTTGCTTGGGACTAAAG 57.077 47.619 0.00 0.00 45.46 1.85
452 1601 2.558359 CCAACTTGCTTGGGACTAAAGG 59.442 50.000 0.00 0.00 45.46 3.11
455 1604 2.158460 ACTTGCTTGGGACTAAAGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
456 1605 2.675658 TGCTTGGGACTAAAGGCTTT 57.324 45.000 17.76 17.76 0.00 3.51
458 1607 2.239400 GCTTGGGACTAAAGGCTTTGT 58.761 47.619 22.32 16.86 0.00 2.83
459 1608 2.628178 GCTTGGGACTAAAGGCTTTGTT 59.372 45.455 22.32 8.73 0.00 2.83
460 1609 3.824443 GCTTGGGACTAAAGGCTTTGTTA 59.176 43.478 22.32 1.59 0.00 2.41
463 1612 5.975693 TGGGACTAAAGGCTTTGTTATTG 57.024 39.130 22.32 7.79 0.00 1.90
464 1613 5.390387 TGGGACTAAAGGCTTTGTTATTGT 58.610 37.500 22.32 10.58 0.00 2.71
465 1614 5.836358 TGGGACTAAAGGCTTTGTTATTGTT 59.164 36.000 22.32 0.00 0.00 2.83
467 1616 6.239204 GGGACTAAAGGCTTTGTTATTGTTGT 60.239 38.462 22.32 0.47 0.00 3.32
468 1617 7.207383 GGACTAAAGGCTTTGTTATTGTTGTT 58.793 34.615 22.32 0.00 0.00 2.83
469 1618 7.169140 GGACTAAAGGCTTTGTTATTGTTGTTG 59.831 37.037 22.32 0.00 0.00 3.33
470 1619 7.552459 ACTAAAGGCTTTGTTATTGTTGTTGT 58.448 30.769 22.32 0.00 0.00 3.32
472 1621 6.660887 AAGGCTTTGTTATTGTTGTTGTTG 57.339 33.333 0.00 0.00 0.00 3.33
473 1622 5.729510 AGGCTTTGTTATTGTTGTTGTTGT 58.270 33.333 0.00 0.00 0.00 3.32
474 1623 6.169800 AGGCTTTGTTATTGTTGTTGTTGTT 58.830 32.000 0.00 0.00 0.00 2.83
475 1624 6.091986 AGGCTTTGTTATTGTTGTTGTTGTTG 59.908 34.615 0.00 0.00 0.00 3.33
491 1903 5.189928 TGTTGTTGTTCACAGGTAACAGAT 58.810 37.500 0.00 0.00 38.05 2.90
492 1904 5.065859 TGTTGTTGTTCACAGGTAACAGATG 59.934 40.000 0.00 0.00 38.05 2.90
558 1970 3.492102 TTGGAGTGCTAAAGCTCAACT 57.508 42.857 3.26 0.00 42.66 3.16
689 2102 7.054124 AGATCCCAAAAGCGATCAATAAGTTA 58.946 34.615 0.00 0.00 37.87 2.24
839 2252 2.223805 CCCTAATTTCCCGATTTGCAGC 60.224 50.000 0.00 0.00 0.00 5.25
1023 2436 3.686241 TGCACTGCATTTCACAGAGTATC 59.314 43.478 0.00 0.00 38.55 2.24
1438 5128 1.563924 TAGTTCACCCGCCATAGTGT 58.436 50.000 0.00 0.00 35.45 3.55
1904 7864 2.579207 TTACGCTAGGTGTGATCTGC 57.421 50.000 0.00 0.00 0.00 4.26
1975 7935 3.619038 GCTCTTCTCCGGTTTGAACATAG 59.381 47.826 0.00 2.79 0.00 2.23
2037 7997 5.838531 AACGTCACTTCTAGAATCCTAGG 57.161 43.478 5.44 0.82 42.06 3.02
2063 8023 6.585695 AACTGAAGACGTAGAGGAATAACA 57.414 37.500 0.00 0.00 0.00 2.41
2131 8095 8.408601 GCAAATGATGTACTAGGTGATTTTCAT 58.591 33.333 0.00 0.00 0.00 2.57
2183 8149 8.405531 CCTTATCCATTTTGTGTCGACATAAAT 58.594 33.333 32.17 27.87 36.94 1.40
2244 8450 7.362920 GCTGAAAGACAAATTCCAGGCTAAATA 60.363 37.037 0.00 0.00 34.07 1.40
2338 8544 5.964958 ATGTTGGACTACAAAATCACTGG 57.035 39.130 0.00 0.00 41.58 4.00
2343 8550 4.825085 TGGACTACAAAATCACTGGGTTTC 59.175 41.667 0.00 0.00 0.00 2.78
2351 8558 0.260230 TCACTGGGTTTCTTTGGCCA 59.740 50.000 0.00 0.00 0.00 5.36
2377 8584 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2378 8585 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2379 8586 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2380 8587 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2381 8588 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2382 8589 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2383 8590 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2384 8591 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2385 8592 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2386 8593 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2387 8594 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2388 8595 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2389 8596 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2390 8597 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2391 8598 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2392 8599 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2393 8600 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2394 8601 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2395 8602 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
2396 8603 1.136565 GTGTGTGTGTGTGTGTGCC 59.863 57.895 0.00 0.00 0.00 5.01
2397 8604 2.394563 TGTGTGTGTGTGTGTGCCG 61.395 57.895 0.00 0.00 0.00 5.69
2398 8605 2.046796 TGTGTGTGTGTGTGCCGT 60.047 55.556 0.00 0.00 0.00 5.68
2512 8719 5.480073 TGCTAAAGGAACACTTGGCATTTAT 59.520 36.000 0.00 0.00 40.94 1.40
2638 8845 7.524717 ACTCACAAGGTAAACATAAATTGCT 57.475 32.000 0.00 0.00 0.00 3.91
2818 9025 9.201989 TGAAATCTTCTAGATACTACACATGGT 57.798 33.333 0.00 0.00 32.89 3.55
2840 9047 7.901029 TGGTAGGATCTGATTCTGATGTAATC 58.099 38.462 8.77 0.00 45.83 1.75
2856 9063 4.062293 TGTAATCAAGGACAACTCCAACG 58.938 43.478 0.00 0.00 39.39 4.10
2865 9072 0.606401 CAACTCCAACGGCATGACCT 60.606 55.000 0.00 0.00 35.61 3.85
2916 9123 2.685380 CAAGAGGAGGGCCCGACT 60.685 66.667 18.44 19.14 40.87 4.18
2942 9149 2.266055 CGGCGGAGAAGAAAGCCT 59.734 61.111 0.00 0.00 46.85 4.58
3033 9240 4.047059 CAAGGCCACGCAAGCAGG 62.047 66.667 5.01 0.00 45.62 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.226437 AGTTGTTTGCCGCACTGAATAG 59.774 45.455 0.00 0.00 0.00 1.73
63 64 1.333619 GAAAGAGAGTTGTTTGCCGCA 59.666 47.619 0.00 0.00 0.00 5.69
66 67 2.952310 ACCAGAAAGAGAGTTGTTTGCC 59.048 45.455 0.00 0.00 0.00 4.52
87 88 4.968080 CCCAATAAATCCCAGGGAATTTCA 59.032 41.667 13.94 0.00 42.25 2.69
105 106 6.134535 TCTGTTACCTGTGAAATACCCAAT 57.865 37.500 0.00 0.00 0.00 3.16
106 107 5.570205 TCTGTTACCTGTGAAATACCCAA 57.430 39.130 0.00 0.00 0.00 4.12
117 118 3.775316 CCCCAACTCTATCTGTTACCTGT 59.225 47.826 0.00 0.00 0.00 4.00
118 119 3.775316 ACCCCAACTCTATCTGTTACCTG 59.225 47.826 0.00 0.00 0.00 4.00
119 120 4.076175 ACCCCAACTCTATCTGTTACCT 57.924 45.455 0.00 0.00 0.00 3.08
120 121 4.202233 GCTACCCCAACTCTATCTGTTACC 60.202 50.000 0.00 0.00 0.00 2.85
121 122 4.404715 TGCTACCCCAACTCTATCTGTTAC 59.595 45.833 0.00 0.00 0.00 2.50
122 123 4.404715 GTGCTACCCCAACTCTATCTGTTA 59.595 45.833 0.00 0.00 0.00 2.41
123 124 3.197983 GTGCTACCCCAACTCTATCTGTT 59.802 47.826 0.00 0.00 0.00 3.16
124 125 2.766828 GTGCTACCCCAACTCTATCTGT 59.233 50.000 0.00 0.00 0.00 3.41
125 126 2.103263 GGTGCTACCCCAACTCTATCTG 59.897 54.545 0.00 0.00 30.04 2.90
126 127 2.292918 TGGTGCTACCCCAACTCTATCT 60.293 50.000 3.33 0.00 37.50 1.98
127 128 2.116238 TGGTGCTACCCCAACTCTATC 58.884 52.381 3.33 0.00 37.50 2.08
128 129 2.263895 TGGTGCTACCCCAACTCTAT 57.736 50.000 3.33 0.00 37.50 1.98
129 130 2.032965 TTGGTGCTACCCCAACTCTA 57.967 50.000 3.33 0.00 37.50 2.43
130 131 1.372501 ATTGGTGCTACCCCAACTCT 58.627 50.000 0.00 0.00 44.36 3.24
131 132 1.818674 CAATTGGTGCTACCCCAACTC 59.181 52.381 0.00 0.00 44.36 3.01
132 133 1.427368 TCAATTGGTGCTACCCCAACT 59.573 47.619 5.42 0.00 44.36 3.16
133 134 1.917872 TCAATTGGTGCTACCCCAAC 58.082 50.000 5.42 0.00 44.36 3.77
134 135 2.109128 TCTTCAATTGGTGCTACCCCAA 59.891 45.455 5.42 0.00 45.55 4.12
135 136 1.707989 TCTTCAATTGGTGCTACCCCA 59.292 47.619 5.42 0.00 37.50 4.96
136 137 2.026262 TCTCTTCAATTGGTGCTACCCC 60.026 50.000 5.42 0.00 37.50 4.95
137 138 3.350219 TCTCTTCAATTGGTGCTACCC 57.650 47.619 5.42 0.00 37.50 3.69
138 139 3.127721 GCTTCTCTTCAATTGGTGCTACC 59.872 47.826 5.42 0.00 39.22 3.18
139 140 4.006319 AGCTTCTCTTCAATTGGTGCTAC 58.994 43.478 5.42 0.00 0.00 3.58
140 141 4.292186 AGCTTCTCTTCAATTGGTGCTA 57.708 40.909 5.42 0.00 0.00 3.49
141 142 3.151912 AGCTTCTCTTCAATTGGTGCT 57.848 42.857 5.42 2.81 0.00 4.40
142 143 3.005155 ACAAGCTTCTCTTCAATTGGTGC 59.995 43.478 5.42 0.62 31.27 5.01
143 144 4.320788 GGACAAGCTTCTCTTCAATTGGTG 60.321 45.833 5.42 0.00 31.27 4.17
144 145 3.823304 GGACAAGCTTCTCTTCAATTGGT 59.177 43.478 5.42 0.00 31.27 3.67
145 146 3.822735 TGGACAAGCTTCTCTTCAATTGG 59.177 43.478 5.42 0.00 31.27 3.16
146 147 5.218139 GTTGGACAAGCTTCTCTTCAATTG 58.782 41.667 0.00 0.00 31.27 2.32
147 148 4.889409 TGTTGGACAAGCTTCTCTTCAATT 59.111 37.500 0.00 0.00 31.27 2.32
148 149 4.464008 TGTTGGACAAGCTTCTCTTCAAT 58.536 39.130 0.00 0.00 31.27 2.57
149 150 3.884895 TGTTGGACAAGCTTCTCTTCAA 58.115 40.909 0.00 0.00 31.27 2.69
150 151 3.558931 TGTTGGACAAGCTTCTCTTCA 57.441 42.857 0.00 0.00 31.27 3.02
151 152 3.124297 CGATGTTGGACAAGCTTCTCTTC 59.876 47.826 0.00 0.00 31.27 2.87
152 153 3.070018 CGATGTTGGACAAGCTTCTCTT 58.930 45.455 0.00 0.00 34.78 2.85
153 154 2.037772 ACGATGTTGGACAAGCTTCTCT 59.962 45.455 0.00 0.00 0.00 3.10
154 155 2.413453 GACGATGTTGGACAAGCTTCTC 59.587 50.000 0.00 0.00 0.00 2.87
155 156 2.037772 AGACGATGTTGGACAAGCTTCT 59.962 45.455 0.00 0.00 0.00 2.85
156 157 2.158449 CAGACGATGTTGGACAAGCTTC 59.842 50.000 0.00 0.00 0.00 3.86
157 158 2.146342 CAGACGATGTTGGACAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
158 159 1.344438 TCAGACGATGTTGGACAAGCT 59.656 47.619 0.00 0.00 0.00 3.74
159 160 1.728971 CTCAGACGATGTTGGACAAGC 59.271 52.381 0.00 0.00 0.00 4.01
160 161 3.303881 TCTCAGACGATGTTGGACAAG 57.696 47.619 0.00 0.00 0.00 3.16
161 162 3.588955 CATCTCAGACGATGTTGGACAA 58.411 45.455 0.00 0.00 36.80 3.18
162 163 2.094026 CCATCTCAGACGATGTTGGACA 60.094 50.000 0.00 0.00 39.26 4.02
163 164 2.093973 ACCATCTCAGACGATGTTGGAC 60.094 50.000 0.00 0.00 39.26 4.02
164 165 2.179427 ACCATCTCAGACGATGTTGGA 58.821 47.619 0.00 0.00 39.26 3.53
165 166 2.680312 ACCATCTCAGACGATGTTGG 57.320 50.000 0.00 0.39 39.26 3.77
166 167 3.061295 CGAAACCATCTCAGACGATGTTG 59.939 47.826 0.00 0.00 39.26 3.33
167 168 3.254060 CGAAACCATCTCAGACGATGTT 58.746 45.455 0.00 0.00 39.26 2.71
168 169 2.417379 CCGAAACCATCTCAGACGATGT 60.417 50.000 0.00 0.00 39.26 3.06
169 170 2.196749 CCGAAACCATCTCAGACGATG 58.803 52.381 0.00 0.00 40.32 3.84
170 171 1.471676 GCCGAAACCATCTCAGACGAT 60.472 52.381 0.00 0.00 0.00 3.73
171 172 0.108804 GCCGAAACCATCTCAGACGA 60.109 55.000 0.00 0.00 0.00 4.20
172 173 0.389817 TGCCGAAACCATCTCAGACG 60.390 55.000 0.00 0.00 0.00 4.18
173 174 2.029838 ATGCCGAAACCATCTCAGAC 57.970 50.000 0.00 0.00 0.00 3.51
174 175 3.244215 GGATATGCCGAAACCATCTCAGA 60.244 47.826 0.00 0.00 0.00 3.27
175 176 3.070018 GGATATGCCGAAACCATCTCAG 58.930 50.000 0.00 0.00 0.00 3.35
176 177 2.437651 TGGATATGCCGAAACCATCTCA 59.562 45.455 0.00 0.00 40.66 3.27
177 178 3.070018 CTGGATATGCCGAAACCATCTC 58.930 50.000 0.00 0.00 40.66 2.75
178 179 2.811873 GCTGGATATGCCGAAACCATCT 60.812 50.000 0.00 0.00 40.66 2.90
179 180 1.537202 GCTGGATATGCCGAAACCATC 59.463 52.381 0.00 0.00 40.66 3.51
180 181 1.609208 GCTGGATATGCCGAAACCAT 58.391 50.000 0.00 0.00 40.66 3.55
181 182 0.813610 CGCTGGATATGCCGAAACCA 60.814 55.000 0.00 0.00 40.66 3.67
182 183 1.941812 CGCTGGATATGCCGAAACC 59.058 57.895 0.00 0.00 40.66 3.27
183 184 1.279840 GCGCTGGATATGCCGAAAC 59.720 57.895 0.00 0.00 40.66 2.78
184 185 1.153269 TGCGCTGGATATGCCGAAA 60.153 52.632 9.73 0.00 40.66 3.46
185 186 1.595109 CTGCGCTGGATATGCCGAA 60.595 57.895 9.73 0.00 40.66 4.30
186 187 2.029518 CTGCGCTGGATATGCCGA 59.970 61.111 9.73 0.00 40.66 5.54
187 188 3.046087 CCTGCGCTGGATATGCCG 61.046 66.667 27.72 0.00 40.66 5.69
188 189 3.360340 GCCTGCGCTGGATATGCC 61.360 66.667 34.52 13.50 37.10 4.40
189 190 3.360340 GGCCTGCGCTGGATATGC 61.360 66.667 34.52 18.93 34.44 3.14
190 191 1.670406 GAGGCCTGCGCTGGATATG 60.670 63.158 34.52 10.13 34.44 1.78
191 192 2.746359 GAGGCCTGCGCTGGATAT 59.254 61.111 34.52 19.46 34.44 1.63
192 193 3.550431 GGAGGCCTGCGCTGGATA 61.550 66.667 34.52 0.00 34.44 2.59
196 197 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
197 198 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
199 200 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
200 201 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
201 202 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
202 203 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
203 204 2.297129 ACTGGAGCTTCTGGAGGCC 61.297 63.158 3.68 0.00 33.44 5.19
204 205 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
205 206 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
206 207 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
207 208 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
208 209 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
209 210 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
210 211 0.179089 CGCTATGCACTGGAGCTTCT 60.179 55.000 9.31 0.00 33.91 2.85
211 212 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
212 213 1.153289 CCGCTATGCACTGGAGCTT 60.153 57.895 9.31 0.00 33.91 3.74
213 214 1.406065 ATCCGCTATGCACTGGAGCT 61.406 55.000 9.31 0.00 33.21 4.09
214 215 1.070445 ATCCGCTATGCACTGGAGC 59.930 57.895 0.00 0.00 33.21 4.70
215 216 0.602106 CCATCCGCTATGCACTGGAG 60.602 60.000 0.00 0.00 33.92 3.86
216 217 1.447217 CCATCCGCTATGCACTGGA 59.553 57.895 0.00 0.00 33.92 3.86
217 218 2.256591 GCCATCCGCTATGCACTGG 61.257 63.158 0.00 0.00 33.92 4.00
218 219 3.337619 GCCATCCGCTATGCACTG 58.662 61.111 0.00 0.00 33.92 3.66
227 228 1.008079 GCATGCTTTAGCCATCCGC 60.008 57.895 11.37 0.00 41.18 5.54
228 229 1.280746 CGCATGCTTTAGCCATCCG 59.719 57.895 17.13 0.00 41.18 4.18
229 230 0.819259 TCCGCATGCTTTAGCCATCC 60.819 55.000 17.13 0.00 41.18 3.51
230 231 0.590195 CTCCGCATGCTTTAGCCATC 59.410 55.000 17.13 0.00 41.18 3.51
231 232 0.181114 TCTCCGCATGCTTTAGCCAT 59.819 50.000 17.13 0.00 41.18 4.40
232 233 0.035534 TTCTCCGCATGCTTTAGCCA 60.036 50.000 17.13 0.00 41.18 4.75
233 234 1.002033 CATTCTCCGCATGCTTTAGCC 60.002 52.381 17.13 0.00 41.18 3.93
234 235 1.672881 ACATTCTCCGCATGCTTTAGC 59.327 47.619 17.13 0.00 42.50 3.09
235 236 2.938451 TGACATTCTCCGCATGCTTTAG 59.062 45.455 17.13 10.08 0.00 1.85
236 237 2.984562 TGACATTCTCCGCATGCTTTA 58.015 42.857 17.13 0.00 0.00 1.85
237 238 1.825090 TGACATTCTCCGCATGCTTT 58.175 45.000 17.13 0.00 0.00 3.51
238 239 1.741706 CTTGACATTCTCCGCATGCTT 59.258 47.619 17.13 0.00 0.00 3.91
241 242 2.864946 CTCTCTTGACATTCTCCGCATG 59.135 50.000 0.00 0.00 0.00 4.06
244 245 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
245 246 1.472376 GCCCTCTCTTGACATTCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
246 247 1.472376 CGCCCTCTCTTGACATTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
247 248 1.472376 CCGCCCTCTCTTGACATTCTC 60.472 57.143 0.00 0.00 0.00 2.87
250 251 1.604378 CCCGCCCTCTCTTGACATT 59.396 57.895 0.00 0.00 0.00 2.71
252 253 2.449967 TACCCCGCCCTCTCTTGACA 62.450 60.000 0.00 0.00 0.00 3.58
256 257 1.381463 GTCTACCCCGCCCTCTCTT 60.381 63.158 0.00 0.00 0.00 2.85
266 267 2.773993 TGTCAAATTCGGTCTACCCC 57.226 50.000 0.00 0.00 0.00 4.95
268 269 2.943033 CCCATGTCAAATTCGGTCTACC 59.057 50.000 0.00 0.00 0.00 3.18
269 270 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
275 276 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
276 277 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
277 278 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
278 279 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
280 281 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
281 282 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
282 283 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
283 284 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
284 285 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
286 287 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
287 288 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
288 289 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
289 290 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
291 292 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
292 293 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
293 294 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
294 295 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
296 297 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
297 298 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
298 299 5.423886 CCAATCCTTCAGGTCTCTCTTAAC 58.576 45.833 0.00 0.00 36.34 2.01
299 300 4.471386 CCCAATCCTTCAGGTCTCTCTTAA 59.529 45.833 0.00 0.00 36.34 1.85
301 302 2.843113 CCCAATCCTTCAGGTCTCTCTT 59.157 50.000 0.00 0.00 36.34 2.85
302 303 2.476199 CCCAATCCTTCAGGTCTCTCT 58.524 52.381 0.00 0.00 36.34 3.10
304 1453 1.203492 ACCCCAATCCTTCAGGTCTCT 60.203 52.381 0.00 0.00 36.34 3.10
311 1460 2.567862 TGGTGATACCCCAATCCTTCA 58.432 47.619 0.00 0.00 37.50 3.02
312 1461 3.662759 TTGGTGATACCCCAATCCTTC 57.337 47.619 0.00 0.00 37.50 3.46
314 1463 3.197983 TCTTTGGTGATACCCCAATCCT 58.802 45.455 0.00 0.00 41.43 3.24
315 1464 3.555966 CTCTTTGGTGATACCCCAATCC 58.444 50.000 0.00 0.00 41.43 3.01
320 1469 2.485657 GCTAGCTCTTTGGTGATACCCC 60.486 54.545 7.70 0.00 37.50 4.95
325 1474 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
327 1476 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
328 1477 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
329 1478 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
330 1479 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
331 1480 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
334 1483 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
335 1484 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
340 1489 0.820891 CATGCACCCCTGTCCATAGC 60.821 60.000 0.00 0.00 0.00 2.97
341 1490 0.179009 CCATGCACCCCTGTCCATAG 60.179 60.000 0.00 0.00 0.00 2.23
343 1492 1.508667 TTCCATGCACCCCTGTCCAT 61.509 55.000 0.00 0.00 0.00 3.41
344 1493 2.141011 CTTCCATGCACCCCTGTCCA 62.141 60.000 0.00 0.00 0.00 4.02
345 1494 1.379044 CTTCCATGCACCCCTGTCC 60.379 63.158 0.00 0.00 0.00 4.02
346 1495 2.048603 GCTTCCATGCACCCCTGTC 61.049 63.158 0.00 0.00 0.00 3.51
347 1496 2.036256 GCTTCCATGCACCCCTGT 59.964 61.111 0.00 0.00 0.00 4.00
348 1497 1.304713 AAGCTTCCATGCACCCCTG 60.305 57.895 0.00 0.00 34.99 4.45
350 1499 3.010413 GCAAGCTTCCATGCACCCC 62.010 63.158 0.00 0.00 42.12 4.95
351 1500 0.680921 TAGCAAGCTTCCATGCACCC 60.681 55.000 10.57 0.00 44.95 4.61
352 1501 1.336125 GATAGCAAGCTTCCATGCACC 59.664 52.381 10.57 0.00 44.95 5.01
353 1502 1.336125 GGATAGCAAGCTTCCATGCAC 59.664 52.381 10.57 2.11 44.95 4.57
354 1503 1.064537 TGGATAGCAAGCTTCCATGCA 60.065 47.619 16.61 6.28 44.95 3.96
358 1507 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
359 1508 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
361 1510 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
362 1511 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
364 1513 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
365 1514 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
367 1516 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
368 1517 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
369 1518 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
370 1519 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
371 1520 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
372 1521 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
373 1522 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
376 1525 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
377 1526 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
386 1535 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
388 1537 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
389 1538 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
390 1539 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
391 1540 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
392 1541 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
393 1542 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
394 1543 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
395 1544 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
412 1561 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
415 1564 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
416 1565 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
418 1567 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
419 1568 1.134371 GCAAGTTGGGGTAGGCTAGAG 60.134 57.143 4.75 0.00 0.00 2.43
421 1570 0.912486 AGCAAGTTGGGGTAGGCTAG 59.088 55.000 4.75 0.00 0.00 3.42
422 1571 1.004277 CAAGCAAGTTGGGGTAGGCTA 59.996 52.381 4.75 0.00 31.82 3.93
423 1572 0.251341 CAAGCAAGTTGGGGTAGGCT 60.251 55.000 4.75 0.00 31.82 4.58
424 1573 2.267045 CAAGCAAGTTGGGGTAGGC 58.733 57.895 4.75 0.00 31.82 3.93
432 1581 2.029918 GCCTTTAGTCCCAAGCAAGTTG 60.030 50.000 0.00 0.00 35.71 3.16
433 1582 2.158460 AGCCTTTAGTCCCAAGCAAGTT 60.158 45.455 0.00 0.00 0.00 2.66
435 1584 2.206576 AGCCTTTAGTCCCAAGCAAG 57.793 50.000 0.00 0.00 0.00 4.01
436 1585 2.627699 CAAAGCCTTTAGTCCCAAGCAA 59.372 45.455 0.00 0.00 0.00 3.91
437 1586 2.238521 CAAAGCCTTTAGTCCCAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
438 1587 2.239400 ACAAAGCCTTTAGTCCCAAGC 58.761 47.619 0.00 0.00 0.00 4.01
439 1588 6.015434 ACAATAACAAAGCCTTTAGTCCCAAG 60.015 38.462 0.00 0.00 0.00 3.61
444 1593 7.704899 ACAACAACAATAACAAAGCCTTTAGTC 59.295 33.333 0.00 0.00 0.00 2.59
445 1594 7.552459 ACAACAACAATAACAAAGCCTTTAGT 58.448 30.769 0.00 0.00 0.00 2.24
447 1596 7.819900 ACAACAACAACAATAACAAAGCCTTTA 59.180 29.630 0.00 0.00 0.00 1.85
448 1597 6.652900 ACAACAACAACAATAACAAAGCCTTT 59.347 30.769 0.00 0.00 0.00 3.11
450 1599 5.729510 ACAACAACAACAATAACAAAGCCT 58.270 33.333 0.00 0.00 0.00 4.58
451 1600 6.128418 ACAACAACAACAACAATAACAAAGCC 60.128 34.615 0.00 0.00 0.00 4.35
452 1601 6.826612 ACAACAACAACAACAATAACAAAGC 58.173 32.000 0.00 0.00 0.00 3.51
455 1604 7.438160 TGTGAACAACAACAACAACAATAACAA 59.562 29.630 0.00 0.00 35.24 2.83
456 1605 6.923508 TGTGAACAACAACAACAACAATAACA 59.076 30.769 0.00 0.00 35.24 2.41
458 1607 6.587990 CCTGTGAACAACAACAACAACAATAA 59.412 34.615 0.00 0.00 38.67 1.40
459 1608 6.096036 CCTGTGAACAACAACAACAACAATA 58.904 36.000 0.00 0.00 38.67 1.90
460 1609 4.928615 CCTGTGAACAACAACAACAACAAT 59.071 37.500 0.00 0.00 38.67 2.71
463 1612 3.908213 ACCTGTGAACAACAACAACAAC 58.092 40.909 0.00 0.00 38.67 3.32
464 1613 5.009710 TGTTACCTGTGAACAACAACAACAA 59.990 36.000 3.14 0.00 38.67 2.83
465 1614 4.519350 TGTTACCTGTGAACAACAACAACA 59.481 37.500 3.14 0.00 38.67 3.33
467 1616 5.004448 TCTGTTACCTGTGAACAACAACAA 58.996 37.500 5.96 0.00 38.67 2.83
468 1617 4.580868 TCTGTTACCTGTGAACAACAACA 58.419 39.130 0.00 4.88 38.67 3.33
469 1618 5.065988 ACATCTGTTACCTGTGAACAACAAC 59.934 40.000 0.00 0.00 38.67 3.32
470 1619 5.189928 ACATCTGTTACCTGTGAACAACAA 58.810 37.500 0.00 0.00 38.67 2.83
472 1621 5.295787 TCAACATCTGTTACCTGTGAACAAC 59.704 40.000 0.00 0.00 36.41 3.32
473 1622 5.295787 GTCAACATCTGTTACCTGTGAACAA 59.704 40.000 0.00 0.00 36.41 2.83
474 1623 4.814234 GTCAACATCTGTTACCTGTGAACA 59.186 41.667 0.00 0.00 36.32 3.18
475 1624 4.213482 GGTCAACATCTGTTACCTGTGAAC 59.787 45.833 11.33 0.00 36.32 3.18
491 1903 6.729690 ATTTGATTTCCAGAAAGGTCAACA 57.270 33.333 8.11 3.13 39.02 3.33
492 1904 8.360390 AGTAATTTGATTTCCAGAAAGGTCAAC 58.640 33.333 8.11 0.86 39.02 3.18
689 2102 7.116736 TGGAGAGGTTTAGAAAGTTCAGTTTT 58.883 34.615 0.00 0.00 0.00 2.43
839 2252 1.906757 TGTTGTTGTTTGCTCTTGCG 58.093 45.000 0.00 0.00 43.34 4.85
1023 2436 2.486982 CACAGAGCCCAGAAAGAACATG 59.513 50.000 0.00 0.00 0.00 3.21
1139 2552 1.141053 GGTTCTGGGCGTTCCATATCT 59.859 52.381 0.31 0.00 46.01 1.98
1438 5128 2.632512 TGGCAGACTTGACATCACAGTA 59.367 45.455 0.00 0.00 37.44 2.74
1570 7530 0.988063 TTACCTGGTGCCATGTAGCA 59.012 50.000 10.23 0.00 41.46 3.49
1632 7592 1.202580 AGTCTCCGATTAGCACATGGC 60.203 52.381 0.00 0.00 45.30 4.40
1670 7630 1.868713 TCACCTTAAGCCGGTATCCA 58.131 50.000 1.90 0.00 32.37 3.41
1904 7864 2.674380 GAAGGCTGCCCACCTGTG 60.674 66.667 16.57 0.00 37.67 3.66
1975 7935 0.464554 CGGGCTTCTTTCCCTGGATC 60.465 60.000 0.00 0.00 41.69 3.36
1996 7956 3.364366 CGTTTCTTCAGAGACAACATGCC 60.364 47.826 0.00 0.00 0.00 4.40
2037 7997 4.698583 TTCCTCTACGTCTTCAGTTAGC 57.301 45.455 0.00 0.00 0.00 3.09
2063 8023 8.826765 AGATTATACTCCATCAACCGGAATATT 58.173 33.333 9.46 0.00 28.44 1.28
2101 8065 4.225042 TCACCTAGTACATCATTTGCACCT 59.775 41.667 0.00 0.00 0.00 4.00
2131 8095 6.942532 AACTAGCATGTGAAAGAGTGAAAA 57.057 33.333 0.00 0.00 0.00 2.29
2183 8149 7.064609 GCTGCAATACTTATACACTTCACAAGA 59.935 37.037 0.00 0.00 0.00 3.02
2244 8450 4.503741 AATAACTGCGTGCATTTTCAGT 57.496 36.364 2.71 0.00 41.08 3.41
2333 8539 0.675633 CTGGCCAAAGAAACCCAGTG 59.324 55.000 7.01 0.00 39.93 3.66
2338 8544 1.111277 ACACACTGGCCAAAGAAACC 58.889 50.000 7.01 0.00 0.00 3.27
2343 8550 0.101040 CACACACACACTGGCCAAAG 59.899 55.000 7.01 4.44 0.00 2.77
2351 8558 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
2377 8584 1.581727 GGCACACACACACACACACA 61.582 55.000 0.00 0.00 0.00 3.72
2378 8585 1.136565 GGCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
2379 8586 2.394563 CGGCACACACACACACACA 61.395 57.895 0.00 0.00 0.00 3.72
2380 8587 1.084935 TACGGCACACACACACACAC 61.085 55.000 0.00 0.00 0.00 3.82
2381 8588 0.179070 ATACGGCACACACACACACA 60.179 50.000 0.00 0.00 0.00 3.72
2382 8589 0.941542 AATACGGCACACACACACAC 59.058 50.000 0.00 0.00 0.00 3.82
2383 8590 1.669604 AAATACGGCACACACACACA 58.330 45.000 0.00 0.00 0.00 3.72
2384 8591 2.412325 GCTAAATACGGCACACACACAC 60.412 50.000 0.00 0.00 0.00 3.82
2385 8592 1.801771 GCTAAATACGGCACACACACA 59.198 47.619 0.00 0.00 0.00 3.72
2386 8593 2.073816 AGCTAAATACGGCACACACAC 58.926 47.619 0.00 0.00 0.00 3.82
2387 8594 2.028476 AGAGCTAAATACGGCACACACA 60.028 45.455 0.00 0.00 0.00 3.72
2388 8595 2.618053 AGAGCTAAATACGGCACACAC 58.382 47.619 0.00 0.00 0.00 3.82
2389 8596 3.328382 AAGAGCTAAATACGGCACACA 57.672 42.857 0.00 0.00 0.00 3.72
2390 8597 5.107133 TCTAAAGAGCTAAATACGGCACAC 58.893 41.667 0.00 0.00 0.00 3.82
2391 8598 5.333299 TCTAAAGAGCTAAATACGGCACA 57.667 39.130 0.00 0.00 0.00 4.57
2392 8599 5.234543 CCTTCTAAAGAGCTAAATACGGCAC 59.765 44.000 0.00 0.00 0.00 5.01
2393 8600 5.357257 CCTTCTAAAGAGCTAAATACGGCA 58.643 41.667 0.00 0.00 0.00 5.69
2394 8601 4.211584 GCCTTCTAAAGAGCTAAATACGGC 59.788 45.833 0.00 0.00 0.00 5.68
2395 8602 5.463724 CAGCCTTCTAAAGAGCTAAATACGG 59.536 44.000 0.00 0.00 34.63 4.02
2396 8603 5.463724 CCAGCCTTCTAAAGAGCTAAATACG 59.536 44.000 0.00 0.00 34.63 3.06
2397 8604 6.350103 ACCAGCCTTCTAAAGAGCTAAATAC 58.650 40.000 0.00 0.00 34.63 1.89
2398 8605 6.561519 ACCAGCCTTCTAAAGAGCTAAATA 57.438 37.500 0.00 0.00 34.63 1.40
2512 8719 3.106054 TCGTGGCCTAAACATTACCCTA 58.894 45.455 3.32 0.00 0.00 3.53
2570 8777 5.643777 GGCAGCTAGAAGTTCAGATGTTTTA 59.356 40.000 16.50 0.00 30.89 1.52
2818 9025 8.591940 CCTTGATTACATCAGAATCAGATCCTA 58.408 37.037 0.00 0.00 42.63 2.94
2840 9047 0.817634 TGCCGTTGGAGTTGTCCTTG 60.818 55.000 0.00 0.00 44.30 3.61
2845 9052 0.889186 GGTCATGCCGTTGGAGTTGT 60.889 55.000 0.00 0.00 0.00 3.32
2876 9083 2.686518 GATTCATTGTCGAGCCGCGC 62.687 60.000 0.00 0.00 40.61 6.86
2877 9084 1.273887 GATTCATTGTCGAGCCGCG 59.726 57.895 0.00 0.00 42.69 6.46
2889 9096 0.471617 CCTCCTCTTGGCCGATTCAT 59.528 55.000 0.00 0.00 0.00 2.57
2977 9184 1.282875 GTCAACGGAAGCCTTGTGC 59.717 57.895 0.00 0.00 41.71 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.