Multiple sequence alignment - TraesCS6B01G215900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G215900 chr6B 100.000 9690 0 0 1 9690 295782055 295772366 0.000000e+00 17895.0
1 TraesCS6B01G215900 chr6B 90.000 100 6 3 9383 9481 277158933 277159029 1.020000e-24 126.0
2 TraesCS6B01G215900 chr6B 87.342 79 10 0 3449 3527 295778964 295778886 3.730000e-14 91.6
3 TraesCS6B01G215900 chr6A 96.919 4089 87 15 5337 9392 230701337 230705419 0.000000e+00 6817.0
4 TraesCS6B01G215900 chr6A 97.329 2920 55 10 832 3729 230697007 230699925 0.000000e+00 4939.0
5 TraesCS6B01G215900 chr6A 97.055 1494 38 5 3672 5162 230699838 230701328 0.000000e+00 2510.0
6 TraesCS6B01G215900 chr6A 80.952 294 53 1 3236 3529 230699255 230699545 7.570000e-56 230.0
7 TraesCS6B01G215900 chr6A 85.606 132 19 0 3039 3170 230699202 230699333 1.310000e-28 139.0
8 TraesCS6B01G215900 chr6A 89.333 75 8 0 3449 3523 230699285 230699359 2.880000e-15 95.3
9 TraesCS6B01G215900 chr6D 98.003 3655 50 9 1530 5162 177991535 177995188 0.000000e+00 6324.0
10 TraesCS6B01G215900 chr6D 97.203 3075 70 10 6333 9392 177997129 178000202 0.000000e+00 5188.0
11 TraesCS6B01G215900 chr6D 97.329 1011 22 4 5337 6343 177995197 177996206 0.000000e+00 1712.0
12 TraesCS6B01G215900 chr6D 95.113 573 14 2 839 1411 177990969 177991527 0.000000e+00 891.0
13 TraesCS6B01G215900 chr6D 96.739 184 6 0 5162 5345 16909444 16909627 3.400000e-79 307.0
14 TraesCS6B01G215900 chr6D 88.550 262 19 7 6095 6351 56911119 56911374 3.400000e-79 307.0
15 TraesCS6B01G215900 chr6D 82.759 261 45 0 3269 3529 177993115 177993375 5.850000e-57 233.0
16 TraesCS6B01G215900 chr6D 93.913 115 6 1 1410 1523 68900008 68899894 1.290000e-38 172.0
17 TraesCS6B01G215900 chr6D 86.364 132 18 0 3039 3170 177993032 177993163 2.820000e-30 145.0
18 TraesCS6B01G215900 chr6D 84.466 103 16 0 3009 3111 177993092 177993194 1.720000e-17 102.0
19 TraesCS6B01G215900 chr6D 88.750 80 9 0 3449 3528 177993115 177993194 2.230000e-16 99.0
20 TraesCS6B01G215900 chr6D 83.333 102 17 0 3069 3170 177993032 177993133 2.880000e-15 95.3
21 TraesCS6B01G215900 chr7B 92.866 771 48 6 1 767 679173451 679174218 0.000000e+00 1112.0
22 TraesCS6B01G215900 chr7B 75.066 754 152 22 6490 7221 498527544 498526805 1.570000e-82 318.0
23 TraesCS6B01G215900 chr7B 86.864 236 26 3 6089 6319 75976199 75976434 9.650000e-65 259.0
24 TraesCS6B01G215900 chr7B 86.864 236 26 3 6089 6319 76721422 76721187 9.650000e-65 259.0
25 TraesCS6B01G215900 chr7B 89.899 99 6 3 9388 9485 145867728 145867823 3.670000e-24 124.0
26 TraesCS6B01G215900 chr7B 89.899 99 6 3 9388 9485 468561675 468561770 3.670000e-24 124.0
27 TraesCS6B01G215900 chr5B 94.201 707 37 4 1 706 139194790 139195493 0.000000e+00 1075.0
28 TraesCS6B01G215900 chr5B 87.446 231 23 4 6094 6319 164461104 164461333 2.680000e-65 261.0
29 TraesCS6B01G215900 chr5B 93.913 115 6 1 1410 1523 69548448 69548562 1.290000e-38 172.0
30 TraesCS6B01G215900 chr3A 88.889 756 63 11 3 750 375743550 375744292 0.000000e+00 911.0
31 TraesCS6B01G215900 chr3A 91.667 144 10 2 608 750 511997940 511998082 2.130000e-46 198.0
32 TraesCS6B01G215900 chr3A 92.742 124 7 2 1410 1532 91478336 91478214 2.780000e-40 178.0
33 TraesCS6B01G215900 chr3A 78.661 239 42 8 300 533 511997669 511997903 6.060000e-32 150.0
34 TraesCS6B01G215900 chr3D 92.797 597 35 3 1 590 499599951 499599356 0.000000e+00 857.0
35 TraesCS6B01G215900 chr3D 97.283 184 5 0 5162 5345 240502864 240502681 7.310000e-81 313.0
36 TraesCS6B01G215900 chr3D 95.288 191 9 0 5155 5345 374702923 374703113 4.400000e-78 303.0
37 TraesCS6B01G215900 chr3D 93.158 190 8 3 582 767 499593776 499593588 3.450000e-69 274.0
38 TraesCS6B01G215900 chr3D 86.975 238 25 4 6095 6328 279911978 279912213 7.460000e-66 263.0
39 TraesCS6B01G215900 chr3D 92.000 150 8 2 621 767 499593316 499593168 3.550000e-49 207.0
40 TraesCS6B01G215900 chr3D 91.176 102 4 4 9389 9488 291320238 291320336 6.110000e-27 134.0
41 TraesCS6B01G215900 chr3B 91.514 601 39 3 1 590 660334478 660333879 0.000000e+00 817.0
42 TraesCS6B01G215900 chr3B 80.123 488 57 22 302 767 168115302 168115771 2.610000e-85 327.0
43 TraesCS6B01G215900 chr3B 97.253 182 5 0 5162 5343 226085694 226085875 9.450000e-80 309.0
44 TraesCS6B01G215900 chr3B 84.351 262 35 4 6089 6344 567503956 567503695 1.620000e-62 252.0
45 TraesCS6B01G215900 chr3B 88.776 196 14 6 582 771 660328293 660328100 5.850000e-57 233.0
46 TraesCS6B01G215900 chr3B 97.872 94 2 0 9577 9670 10288993 10288900 7.790000e-36 163.0
47 TraesCS6B01G215900 chr3B 89.899 99 6 3 9388 9485 107158045 107157950 3.670000e-24 124.0
48 TraesCS6B01G215900 chr2B 80.453 486 57 23 302 767 637928432 637927965 4.340000e-88 337.0
49 TraesCS6B01G215900 chr2B 91.667 96 4 3 9390 9483 696361650 696361743 7.900000e-26 130.0
50 TraesCS6B01G215900 chr7A 75.098 763 151 26 6490 7230 521792222 521792967 4.370000e-83 320.0
51 TraesCS6B01G215900 chr7A 95.745 94 3 1 9578 9670 195835349 195835442 6.060000e-32 150.0
52 TraesCS6B01G215900 chr4B 98.324 179 3 0 5162 5340 220165010 220164832 2.030000e-81 315.0
53 TraesCS6B01G215900 chr4B 94.690 113 5 1 1407 1518 134336918 134337030 3.600000e-39 174.0
54 TraesCS6B01G215900 chr7D 97.283 184 5 0 5162 5345 119930650 119930833 7.310000e-81 313.0
55 TraesCS6B01G215900 chr7D 74.702 755 139 31 6490 7219 474348260 474347533 1.230000e-73 289.0
56 TraesCS6B01G215900 chr7D 94.643 112 4 2 1410 1520 185178056 185178166 1.290000e-38 172.0
57 TraesCS6B01G215900 chr7D 91.579 95 5 2 9383 9476 93543113 93543021 2.840000e-25 128.0
58 TraesCS6B01G215900 chr5D 97.283 184 5 0 5162 5345 236022772 236022589 7.310000e-81 313.0
59 TraesCS6B01G215900 chr2D 97.283 184 5 0 5162 5345 170837001 170837184 7.310000e-81 313.0
60 TraesCS6B01G215900 chr2D 91.333 150 12 1 8551 8699 49352243 49352094 4.590000e-48 204.0
61 TraesCS6B01G215900 chr2D 94.872 117 4 2 1410 1525 73968164 73968049 2.150000e-41 182.0
62 TraesCS6B01G215900 chr2D 93.913 115 6 1 1410 1523 418072098 418071984 1.290000e-38 172.0
63 TraesCS6B01G215900 chr2D 100.000 30 0 0 8845 8874 49351959 49351930 1.000000e-03 56.5
64 TraesCS6B01G215900 chrUn 96.739 184 6 0 5162 5345 29149769 29149586 3.400000e-79 307.0
65 TraesCS6B01G215900 chrUn 92.929 99 4 2 9388 9485 100223736 100223832 3.650000e-29 141.0
66 TraesCS6B01G215900 chr1B 85.892 241 28 4 6094 6329 622231078 622230839 1.620000e-62 252.0
67 TraesCS6B01G215900 chr1B 95.402 87 3 1 9391 9476 249511580 249511494 4.720000e-28 137.0
68 TraesCS6B01G215900 chr2A 99.029 103 1 0 1986 2088 718909360 718909258 1.660000e-42 185.0
69 TraesCS6B01G215900 chr1A 94.545 110 5 1 1408 1516 115437173 115437282 1.670000e-37 169.0
70 TraesCS6B01G215900 chr5A 85.366 82 11 1 9579 9659 126627019 126626938 6.240000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G215900 chr6B 295772366 295782055 9689 True 8993.300000 17895 93.671000 1 9690 2 chr6B.!!$R1 9689
1 TraesCS6B01G215900 chr6A 230697007 230705419 8412 False 2455.050000 6817 91.199000 832 9392 6 chr6A.!!$F1 8560
2 TraesCS6B01G215900 chr6D 177990969 178000202 9233 False 1643.255556 6324 90.368889 839 9392 9 chr6D.!!$F3 8553
3 TraesCS6B01G215900 chr7B 679173451 679174218 767 False 1112.000000 1112 92.866000 1 767 1 chr7B.!!$F4 766
4 TraesCS6B01G215900 chr7B 498526805 498527544 739 True 318.000000 318 75.066000 6490 7221 1 chr7B.!!$R2 731
5 TraesCS6B01G215900 chr5B 139194790 139195493 703 False 1075.000000 1075 94.201000 1 706 1 chr5B.!!$F2 705
6 TraesCS6B01G215900 chr3A 375743550 375744292 742 False 911.000000 911 88.889000 3 750 1 chr3A.!!$F1 747
7 TraesCS6B01G215900 chr3D 499599356 499599951 595 True 857.000000 857 92.797000 1 590 1 chr3D.!!$R2 589
8 TraesCS6B01G215900 chr3D 499593168 499593776 608 True 240.500000 274 92.579000 582 767 2 chr3D.!!$R3 185
9 TraesCS6B01G215900 chr3B 660333879 660334478 599 True 817.000000 817 91.514000 1 590 1 chr3B.!!$R5 589
10 TraesCS6B01G215900 chr7A 521792222 521792967 745 False 320.000000 320 75.098000 6490 7230 1 chr7A.!!$F2 740
11 TraesCS6B01G215900 chr7D 474347533 474348260 727 True 289.000000 289 74.702000 6490 7219 1 chr7D.!!$R2 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 813 0.618458 TGCCAACGAGAATTAGCCCT 59.382 50.000 0.00 0.00 0.00 5.19 F
1103 1120 0.529833 CGGCTGACTGACTGACTGAT 59.470 55.000 0.00 0.00 0.00 2.90 F
1672 1690 2.005451 CTTTCCTCACCAGAAGCGATG 58.995 52.381 0.00 0.00 0.00 3.84 F
2724 2771 1.788308 CCAGAAATTTTGTGCACTGCG 59.212 47.619 19.41 0.00 0.00 5.18 F
3163 3210 3.976015 AGGTTGTTGAAGGAAAAGGACA 58.024 40.909 0.00 0.00 0.00 4.02 F
4681 4761 2.688958 ACCCTGCGAGTAGTTATGTCTC 59.311 50.000 0.00 0.00 0.00 3.36 F
5216 5296 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43 F
5217 5297 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60 F
5669 5749 0.462759 CTGAGAAGGAATGGGGCGTC 60.463 60.000 0.00 0.00 0.00 5.19 F
7119 8159 0.950836 TGTTTGTGCAGGTCAATCCG 59.049 50.000 0.00 0.00 41.99 4.18 F
7938 8980 2.333926 TGTGCGTATTTCCAGTTCTCG 58.666 47.619 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2213 0.107410 ACGAGAACAAGTTGGCACCA 60.107 50.000 7.96 0.00 0.00 4.17 R
2192 2239 3.153369 TCTGCAAAATAGGTTGGCTCA 57.847 42.857 0.00 0.00 0.00 4.26 R
3275 3325 2.433436 ACGACCTAACCATTTCTTGCC 58.567 47.619 0.00 0.00 0.00 4.52 R
3734 3814 2.897326 TCCTTCTCCTTCGTTGACATGA 59.103 45.455 0.00 0.00 0.00 3.07 R
5037 5117 4.525024 TCCTTTTGTTTTGTAGGGTTCGA 58.475 39.130 0.00 0.00 0.00 3.71 R
6336 6420 0.762461 TTTTGGGCCTCCTTGGTTGG 60.762 55.000 4.53 0.00 38.35 3.77 R
6338 6422 1.343985 ACTTTTTGGGCCTCCTTGGTT 60.344 47.619 4.53 0.00 38.35 3.67 R
6845 7885 2.310779 TGAGCCTGTCTCCTGTAACT 57.689 50.000 0.00 0.00 41.18 2.24 R
7435 8475 5.571784 AATCTTGTGCCACATGACATAAG 57.428 39.130 14.79 8.75 35.51 1.73 R
8594 9637 1.135141 TGTTGGCACTGCAACAAGAAC 60.135 47.619 13.36 3.72 38.22 3.01 R
9549 10610 1.521580 TGACGATTGAGTTGCATGCA 58.478 45.000 18.46 18.46 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.067142 GTGAGTCGTGATTAGGTGCCA 60.067 52.381 0.00 0.00 0.00 4.92
26 27 0.743345 GTCGTGATTAGGTGCCACCC 60.743 60.000 11.06 0.00 39.75 4.61
63 64 1.301244 GGCGAGCATCATCATCGGT 60.301 57.895 0.00 0.00 36.96 4.69
80 81 0.822164 GGTAGTATGTGGTGCCGACT 59.178 55.000 0.00 0.00 0.00 4.18
130 131 2.281208 GCGGGCAACAGTACCACA 60.281 61.111 0.00 0.00 39.74 4.17
157 158 1.627297 GGGGAGAAGCACCTACTGGG 61.627 65.000 0.00 0.00 36.99 4.45
494 496 1.736645 CGGTTTGATGCCGTCGTCT 60.737 57.895 0.00 0.00 43.84 4.18
502 504 1.607628 GATGCCGTCGTCTGTAGGTAT 59.392 52.381 0.00 0.00 0.00 2.73
657 671 1.991813 TCATCATGGGTCCCACTTGAA 59.008 47.619 14.57 0.00 35.80 2.69
794 811 3.782889 AAATGCCAACGAGAATTAGCC 57.217 42.857 0.00 0.00 0.00 3.93
795 812 1.680338 ATGCCAACGAGAATTAGCCC 58.320 50.000 0.00 0.00 0.00 5.19
796 813 0.618458 TGCCAACGAGAATTAGCCCT 59.382 50.000 0.00 0.00 0.00 5.19
797 814 1.004277 TGCCAACGAGAATTAGCCCTT 59.996 47.619 0.00 0.00 0.00 3.95
798 815 1.401905 GCCAACGAGAATTAGCCCTTG 59.598 52.381 0.00 0.00 0.00 3.61
799 816 2.017049 CCAACGAGAATTAGCCCTTGG 58.983 52.381 0.00 0.00 0.00 3.61
800 817 2.618045 CCAACGAGAATTAGCCCTTGGT 60.618 50.000 0.00 0.00 0.00 3.67
801 818 3.081804 CAACGAGAATTAGCCCTTGGTT 58.918 45.455 0.00 0.00 0.00 3.67
802 819 2.711542 ACGAGAATTAGCCCTTGGTTG 58.288 47.619 0.00 0.00 0.00 3.77
803 820 2.017049 CGAGAATTAGCCCTTGGTTGG 58.983 52.381 0.00 0.00 0.00 3.77
804 821 2.618045 CGAGAATTAGCCCTTGGTTGGT 60.618 50.000 0.00 0.00 0.00 3.67
805 822 3.017442 GAGAATTAGCCCTTGGTTGGTC 58.983 50.000 0.00 0.00 0.00 4.02
806 823 2.649816 AGAATTAGCCCTTGGTTGGTCT 59.350 45.455 0.00 0.00 0.00 3.85
807 824 3.076032 AGAATTAGCCCTTGGTTGGTCTT 59.924 43.478 0.00 0.00 0.00 3.01
808 825 4.291249 AGAATTAGCCCTTGGTTGGTCTTA 59.709 41.667 0.00 0.00 0.00 2.10
809 826 4.881157 ATTAGCCCTTGGTTGGTCTTAT 57.119 40.909 0.00 0.00 0.00 1.73
810 827 4.668138 TTAGCCCTTGGTTGGTCTTATT 57.332 40.909 0.00 0.00 0.00 1.40
811 828 3.542969 AGCCCTTGGTTGGTCTTATTT 57.457 42.857 0.00 0.00 0.00 1.40
812 829 3.856900 AGCCCTTGGTTGGTCTTATTTT 58.143 40.909 0.00 0.00 0.00 1.82
813 830 4.231273 AGCCCTTGGTTGGTCTTATTTTT 58.769 39.130 0.00 0.00 0.00 1.94
829 846 2.323213 TTTTTCCCTTCCGTCGTGC 58.677 52.632 0.00 0.00 0.00 5.34
830 847 1.500512 TTTTTCCCTTCCGTCGTGCG 61.501 55.000 0.00 0.00 40.95 5.34
831 848 2.647680 TTTTCCCTTCCGTCGTGCGT 62.648 55.000 0.00 0.00 39.32 5.24
832 849 3.562779 TTCCCTTCCGTCGTGCGTC 62.563 63.158 0.00 0.00 39.32 5.19
833 850 4.052229 CCCTTCCGTCGTGCGTCT 62.052 66.667 0.00 0.00 39.32 4.18
834 851 2.504244 CCTTCCGTCGTGCGTCTC 60.504 66.667 0.00 0.00 39.32 3.36
835 852 2.504244 CTTCCGTCGTGCGTCTCC 60.504 66.667 0.00 0.00 39.32 3.71
836 853 4.394078 TTCCGTCGTGCGTCTCCG 62.394 66.667 0.00 0.00 39.32 4.63
1103 1120 0.529833 CGGCTGACTGACTGACTGAT 59.470 55.000 0.00 0.00 0.00 2.90
1311 1328 3.823330 GACGACGCCTCCACGGAT 61.823 66.667 0.00 0.00 37.37 4.18
1413 1430 2.547826 GTTGCCGTATCCCTGTTACTC 58.452 52.381 0.00 0.00 0.00 2.59
1418 1435 2.662866 CGTATCCCTGTTACTCCCTCA 58.337 52.381 0.00 0.00 0.00 3.86
1433 1450 5.368989 ACTCCCTCAGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 32.17 2.34
1454 1472 9.706691 TGTAAGACCTTTAGACATTTAAGACAG 57.293 33.333 0.00 0.00 0.00 3.51
1514 1532 6.365520 ACTTACAAAAATGAACAGAGGGAGT 58.634 36.000 0.00 0.00 0.00 3.85
1520 1538 8.822805 ACAAAAATGAACAGAGGGAGTAGTATA 58.177 33.333 0.00 0.00 0.00 1.47
1672 1690 2.005451 CTTTCCTCACCAGAAGCGATG 58.995 52.381 0.00 0.00 0.00 3.84
1953 1992 2.672961 TTCTATGCAGAACCGTCCAG 57.327 50.000 0.00 0.00 35.82 3.86
2108 2147 3.441572 GCATACTGCACTTGAAACCATCT 59.558 43.478 0.00 0.00 44.26 2.90
2192 2239 3.243068 GCCAACTTGTTCTCGTGTTTGAT 60.243 43.478 0.00 0.00 0.00 2.57
2265 2312 3.257393 GAACAGCATCGTTGATGAGAGT 58.743 45.455 17.93 1.01 41.87 3.24
2280 2327 5.830457 TGATGAGAGTATCGACAGGAAGAAT 59.170 40.000 0.00 0.00 42.67 2.40
2389 2436 5.163893 CGTGTTAACATCTTTCCTTGCGTAT 60.164 40.000 12.26 0.00 0.00 3.06
2724 2771 1.788308 CCAGAAATTTTGTGCACTGCG 59.212 47.619 19.41 0.00 0.00 5.18
3163 3210 3.976015 AGGTTGTTGAAGGAAAAGGACA 58.024 40.909 0.00 0.00 0.00 4.02
3252 3302 7.014422 AGGTTACTTAAGGAGAAGGATGATACG 59.986 40.741 7.53 0.00 0.00 3.06
3275 3325 6.998338 CGATAGTGACATTGAAAAAGGAGAG 58.002 40.000 0.00 0.00 0.00 3.20
3498 3548 9.838339 TTGTTGAAGGAGAAGGAAGATATAATC 57.162 33.333 0.00 0.00 0.00 1.75
3614 3664 9.412460 ACAAACAACAGATGATGGTAATGATAT 57.588 29.630 0.00 0.00 0.00 1.63
3707 3757 7.257790 TGAAGGAGAAGGAAGATACAATTCA 57.742 36.000 0.00 0.00 0.00 2.57
3728 3808 6.378661 TCAATTGATGAAGGAGAAGGAAGA 57.621 37.500 3.38 0.00 34.30 2.87
3729 3809 6.176183 TCAATTGATGAAGGAGAAGGAAGAC 58.824 40.000 3.38 0.00 34.30 3.01
3730 3810 5.768980 ATTGATGAAGGAGAAGGAAGACA 57.231 39.130 0.00 0.00 0.00 3.41
3731 3811 5.768980 TTGATGAAGGAGAAGGAAGACAT 57.231 39.130 0.00 0.00 0.00 3.06
3732 3812 5.768980 TGATGAAGGAGAAGGAAGACATT 57.231 39.130 0.00 0.00 0.00 2.71
3733 3813 6.131972 TGATGAAGGAGAAGGAAGACATTT 57.868 37.500 0.00 0.00 0.00 2.32
3734 3814 6.546484 TGATGAAGGAGAAGGAAGACATTTT 58.454 36.000 0.00 0.00 0.00 1.82
3735 3815 6.656693 TGATGAAGGAGAAGGAAGACATTTTC 59.343 38.462 0.00 0.00 0.00 2.29
3736 3816 5.940617 TGAAGGAGAAGGAAGACATTTTCA 58.059 37.500 0.00 0.00 0.00 2.69
3737 3817 6.546484 TGAAGGAGAAGGAAGACATTTTCAT 58.454 36.000 0.00 0.00 0.00 2.57
3738 3818 6.432162 TGAAGGAGAAGGAAGACATTTTCATG 59.568 38.462 0.00 0.00 36.34 3.07
3821 3901 5.708697 TGAAGCAATCAACTGATGAAGACAT 59.291 36.000 0.00 0.00 42.54 3.06
4592 4672 6.096001 GGATTTGAGGCTATGTTCTGTTTCAT 59.904 38.462 0.00 0.00 0.00 2.57
4677 4757 3.520290 TGAACCCTGCGAGTAGTTATG 57.480 47.619 0.00 0.00 0.00 1.90
4681 4761 2.688958 ACCCTGCGAGTAGTTATGTCTC 59.311 50.000 0.00 0.00 0.00 3.36
5037 5117 4.378046 GCGACAATGGTGAACTCGTTTTAT 60.378 41.667 0.00 0.00 0.00 1.40
5118 5198 3.119209 GCCTACCACTACACAAGGTACTC 60.119 52.174 0.00 0.00 38.49 2.59
5126 5206 5.577164 CACTACACAAGGTACTCATAACAGC 59.423 44.000 0.00 0.00 38.49 4.40
5162 5242 7.331193 GCAATTTACCTTCTCTCGAGTTTCTAA 59.669 37.037 13.13 0.47 0.00 2.10
5163 5243 9.204570 CAATTTACCTTCTCTCGAGTTTCTAAA 57.795 33.333 13.13 8.37 0.00 1.85
5164 5244 8.989653 ATTTACCTTCTCTCGAGTTTCTAAAG 57.010 34.615 13.13 7.98 0.00 1.85
5165 5245 5.394224 ACCTTCTCTCGAGTTTCTAAAGG 57.606 43.478 13.13 17.09 38.36 3.11
5166 5246 4.177783 CCTTCTCTCGAGTTTCTAAAGGC 58.822 47.826 13.13 0.00 0.00 4.35
5168 5248 1.921230 CTCTCGAGTTTCTAAAGGCGC 59.079 52.381 13.13 0.00 0.00 6.53
5169 5249 0.640768 CTCGAGTTTCTAAAGGCGCG 59.359 55.000 0.00 0.00 0.00 6.86
5170 5250 1.058903 CGAGTTTCTAAAGGCGCGC 59.941 57.895 25.94 25.94 0.00 6.86
5171 5251 1.424240 GAGTTTCTAAAGGCGCGCC 59.576 57.895 42.34 42.34 0.00 6.53
5198 5278 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
5199 5279 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
5200 5280 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
5201 5281 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
5202 5282 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
5203 5283 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
5204 5284 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
5210 5290 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
5211 5291 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
5212 5292 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
5213 5293 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
5214 5294 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
5215 5295 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
5216 5296 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
5217 5297 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
5235 5315 2.192463 CGCATTACGCATAACTACGC 57.808 50.000 0.00 0.00 42.60 4.42
5236 5316 1.784856 CGCATTACGCATAACTACGCT 59.215 47.619 0.00 0.00 42.60 5.07
5237 5317 2.217847 CGCATTACGCATAACTACGCTT 59.782 45.455 0.00 0.00 42.60 4.68
5238 5318 3.422876 CGCATTACGCATAACTACGCTTA 59.577 43.478 0.00 0.00 42.60 3.09
5239 5319 4.085466 CGCATTACGCATAACTACGCTTAA 60.085 41.667 0.00 0.00 42.60 1.85
5240 5320 5.388061 CGCATTACGCATAACTACGCTTAAT 60.388 40.000 0.00 0.00 42.60 1.40
5241 5321 6.007677 GCATTACGCATAACTACGCTTAATC 58.992 40.000 0.00 0.00 41.79 1.75
5242 5322 6.128902 GCATTACGCATAACTACGCTTAATCT 60.129 38.462 0.00 0.00 41.79 2.40
5243 5323 6.742999 TTACGCATAACTACGCTTAATCTG 57.257 37.500 0.00 0.00 0.00 2.90
5244 5324 4.679662 ACGCATAACTACGCTTAATCTGT 58.320 39.130 0.00 0.00 0.00 3.41
5245 5325 4.503007 ACGCATAACTACGCTTAATCTGTG 59.497 41.667 0.00 0.00 0.00 3.66
5246 5326 4.606232 CGCATAACTACGCTTAATCTGTGC 60.606 45.833 0.00 0.00 0.00 4.57
5247 5327 4.270084 GCATAACTACGCTTAATCTGTGCA 59.730 41.667 0.00 0.00 0.00 4.57
5248 5328 5.050091 GCATAACTACGCTTAATCTGTGCAT 60.050 40.000 0.00 0.00 0.00 3.96
5249 5329 6.145534 GCATAACTACGCTTAATCTGTGCATA 59.854 38.462 0.00 0.00 0.00 3.14
5250 5330 7.307160 GCATAACTACGCTTAATCTGTGCATAA 60.307 37.037 0.00 0.00 0.00 1.90
5251 5331 5.968387 ACTACGCTTAATCTGTGCATAAC 57.032 39.130 0.00 0.00 0.00 1.89
5252 5332 5.661458 ACTACGCTTAATCTGTGCATAACT 58.339 37.500 0.00 0.00 0.00 2.24
5253 5333 4.864916 ACGCTTAATCTGTGCATAACTG 57.135 40.909 0.00 0.00 0.00 3.16
5264 5344 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
5265 5345 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
5280 5360 2.911819 GCATGCGCTTTGGTTAGTAA 57.088 45.000 9.73 0.00 34.30 2.24
5281 5361 3.210358 GCATGCGCTTTGGTTAGTAAA 57.790 42.857 9.73 0.00 34.30 2.01
5282 5362 3.171277 GCATGCGCTTTGGTTAGTAAAG 58.829 45.455 9.73 0.00 38.00 1.85
5289 5369 3.821841 CTTTGGTTAGTAAAGCGCAAGG 58.178 45.455 11.47 0.00 35.82 3.61
5290 5370 1.161843 TGGTTAGTAAAGCGCAAGGC 58.838 50.000 11.47 0.00 44.05 4.35
5301 5381 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
5302 5382 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
5307 5387 2.334653 CGGTGGCAAAACGCACAT 59.665 55.556 0.00 0.00 45.17 3.21
5308 5388 1.299773 CGGTGGCAAAACGCACATT 60.300 52.632 0.00 0.00 45.17 2.71
5309 5389 0.873743 CGGTGGCAAAACGCACATTT 60.874 50.000 0.00 0.00 45.17 2.32
5310 5390 1.600663 CGGTGGCAAAACGCACATTTA 60.601 47.619 0.00 0.00 45.17 1.40
5311 5391 2.474816 GGTGGCAAAACGCACATTTAA 58.525 42.857 0.00 0.00 45.17 1.52
5312 5392 2.219903 GGTGGCAAAACGCACATTTAAC 59.780 45.455 0.00 0.00 45.17 2.01
5313 5393 2.097637 GTGGCAAAACGCACATTTAACG 60.098 45.455 0.00 0.00 45.17 3.18
5314 5394 1.136748 GGCAAAACGCACATTTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
5315 5395 1.136748 GCAAAACGCACATTTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
5316 5396 2.389998 CAAAACGCACATTTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
5317 5397 3.556513 CAAAACGCACATTTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
5318 5398 3.465122 AAACGCACATTTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
5319 5399 0.725117 ACGCACATTTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
5545 5625 8.633075 TCAGAACATGAACTTTTAGCTTTTTG 57.367 30.769 0.00 0.00 34.02 2.44
5572 5652 7.994425 TCTGTTTGCATGGAAGAACTAATAA 57.006 32.000 0.00 0.00 0.00 1.40
5669 5749 0.462759 CTGAGAAGGAATGGGGCGTC 60.463 60.000 0.00 0.00 0.00 5.19
5799 5879 0.991355 TCTCCTTGGTGGTGGTGGTT 60.991 55.000 0.00 0.00 37.07 3.67
5880 5960 5.853282 GTGTGTTTTCTGCATGTTCTATGTC 59.147 40.000 0.00 0.00 0.00 3.06
6187 6270 2.691011 GGGTGTTTTGTTCTAGCCACAA 59.309 45.455 3.81 3.81 32.16 3.33
6189 6272 3.490249 GGTGTTTTGTTCTAGCCACAACC 60.490 47.826 6.78 3.33 33.81 3.77
6311 6395 1.407025 GCACCTAAGGTAAGGCAGGTC 60.407 57.143 0.00 0.00 39.40 3.85
6335 6419 4.503741 GCAAACTCTGGCAAATTAGTCA 57.496 40.909 0.00 0.00 0.00 3.41
6336 6420 4.229876 GCAAACTCTGGCAAATTAGTCAC 58.770 43.478 0.00 0.00 0.00 3.67
6338 6422 3.788227 ACTCTGGCAAATTAGTCACCA 57.212 42.857 0.00 0.00 0.00 4.17
6344 7360 3.320541 TGGCAAATTAGTCACCAACCAAG 59.679 43.478 0.00 0.00 0.00 3.61
7119 8159 0.950836 TGTTTGTGCAGGTCAATCCG 59.049 50.000 0.00 0.00 41.99 4.18
7233 8273 5.536538 GGAGGGAAAAGAAGTCAAAGATGTT 59.463 40.000 0.00 0.00 0.00 2.71
7313 8353 6.115446 CAGTGATATTGCAAGGACCTTAAGA 58.885 40.000 6.38 0.00 0.00 2.10
7403 8443 9.243637 GATATTGAGGTGCGCAAATAAATTAAA 57.756 29.630 14.00 0.00 0.00 1.52
7435 8475 6.156748 ACTAGGGTGTCAAAATTCAAAACC 57.843 37.500 0.00 0.00 0.00 3.27
7436 8476 5.897250 ACTAGGGTGTCAAAATTCAAAACCT 59.103 36.000 0.00 0.00 0.00 3.50
7683 8725 3.714798 AGGAAAGGTCTCAAGTGTTGGTA 59.285 43.478 0.00 0.00 0.00 3.25
7938 8980 2.333926 TGTGCGTATTTCCAGTTCTCG 58.666 47.619 0.00 0.00 0.00 4.04
8142 9184 2.777692 CCTAAACCAAGGGATCCTGCTA 59.222 50.000 12.58 0.00 32.13 3.49
8240 9282 7.243604 TGACAAAATAATGCTTGGGAGAAAT 57.756 32.000 0.00 0.00 0.00 2.17
8319 9361 7.812690 ATCTCGGTAACATACATGTACAGTA 57.187 36.000 7.96 4.79 40.80 2.74
8356 9398 2.702592 TACAACGGGATTTAGCTGGG 57.297 50.000 0.00 0.00 0.00 4.45
8431 9473 5.681337 TTTGCATTGACGAACAGATAACA 57.319 34.783 0.00 0.00 0.00 2.41
8506 9548 8.964476 AAAAAGTGACTCTTGTAGAAATCTCA 57.036 30.769 0.00 0.00 36.40 3.27
8768 9811 9.815306 ATATCTATTGGAAGCTCTAGAGTGTAA 57.185 33.333 20.75 9.81 0.00 2.41
8817 9860 2.291540 TGAGTTGGAAATTAGGCAGGGG 60.292 50.000 0.00 0.00 0.00 4.79
8820 9863 0.629058 TGGAAATTAGGCAGGGGGAC 59.371 55.000 0.00 0.00 0.00 4.46
8960 10008 5.124457 GCAATTCAGTGAAGGCTTCTAATCA 59.876 40.000 26.26 5.23 0.00 2.57
9079 10134 6.318648 TGTTTCAGTTGTGCTCTTAGATTTGT 59.681 34.615 0.00 0.00 0.00 2.83
9124 10179 5.607171 AGGATTTGGGGTTCAGTATAGTAGG 59.393 44.000 0.00 0.00 0.00 3.18
9125 10180 5.605488 GGATTTGGGGTTCAGTATAGTAGGA 59.395 44.000 0.00 0.00 0.00 2.94
9169 10224 9.086336 TCATTCTTTGTTGTTTTTCAAGATGTC 57.914 29.630 0.00 0.00 36.66 3.06
9175 10230 4.223320 TGTTTTTCAAGATGTCGCCTTC 57.777 40.909 0.00 0.00 0.00 3.46
9264 10321 2.483876 CACTGTGAAGAACATGACCGT 58.516 47.619 0.32 0.00 38.39 4.83
9269 10326 4.304110 TGTGAAGAACATGACCGTAGTTC 58.696 43.478 0.00 0.00 41.37 3.01
9273 10330 4.442375 AGAACATGACCGTAGTTCTCAG 57.558 45.455 0.00 0.00 46.47 3.35
9274 10331 3.827302 AGAACATGACCGTAGTTCTCAGT 59.173 43.478 0.00 0.00 46.47 3.41
9275 10332 5.008331 AGAACATGACCGTAGTTCTCAGTA 58.992 41.667 0.00 0.00 46.47 2.74
9276 10333 4.966965 ACATGACCGTAGTTCTCAGTAG 57.033 45.455 0.00 0.00 0.00 2.57
9362 10423 4.580580 AGGAAACTGTGTTGACTTGATTCC 59.419 41.667 0.00 0.00 41.13 3.01
9368 10429 3.876914 TGTGTTGACTTGATTCCACTGAC 59.123 43.478 0.00 0.00 0.00 3.51
9392 10453 6.971184 ACGCAATGAACTATGTACAGTACTAC 59.029 38.462 12.07 0.00 0.00 2.73
9393 10454 7.148120 ACGCAATGAACTATGTACAGTACTACT 60.148 37.037 12.07 0.10 0.00 2.57
9394 10455 7.376336 CGCAATGAACTATGTACAGTACTACTC 59.624 40.741 12.07 2.95 0.00 2.59
9395 10456 7.648510 GCAATGAACTATGTACAGTACTACTCC 59.351 40.741 12.07 0.00 0.00 3.85
9396 10457 7.820578 ATGAACTATGTACAGTACTACTCCC 57.179 40.000 12.07 0.00 0.00 4.30
9397 10458 6.966751 TGAACTATGTACAGTACTACTCCCT 58.033 40.000 12.07 0.00 0.00 4.20
9398 10459 7.052873 TGAACTATGTACAGTACTACTCCCTC 58.947 42.308 12.07 1.74 0.00 4.30
9399 10460 5.939447 ACTATGTACAGTACTACTCCCTCC 58.061 45.833 12.07 0.00 0.00 4.30
9400 10461 3.272574 TGTACAGTACTACTCCCTCCG 57.727 52.381 12.07 0.00 0.00 4.63
9401 10462 2.573462 TGTACAGTACTACTCCCTCCGT 59.427 50.000 12.07 0.00 0.00 4.69
9402 10463 2.416680 ACAGTACTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
9403 10464 1.064832 ACAGTACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
9404 10465 0.179936 AGTACTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
9405 10466 0.179000 GTACTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
9406 10467 1.135094 TACTACTCCCTCCGTCCGAT 58.865 55.000 0.00 0.00 0.00 4.18
9407 10468 1.135094 ACTACTCCCTCCGTCCGATA 58.865 55.000 0.00 0.00 0.00 2.92
9408 10469 1.072015 ACTACTCCCTCCGTCCGATAG 59.928 57.143 0.00 0.00 0.00 2.08
9409 10470 1.072015 CTACTCCCTCCGTCCGATAGT 59.928 57.143 0.00 0.00 0.00 2.12
9410 10471 1.135094 ACTCCCTCCGTCCGATAGTA 58.865 55.000 0.00 0.00 0.00 1.82
9411 10472 1.704070 ACTCCCTCCGTCCGATAGTAT 59.296 52.381 0.00 0.00 0.00 2.12
9412 10473 2.909006 ACTCCCTCCGTCCGATAGTATA 59.091 50.000 0.00 0.00 0.00 1.47
9413 10474 3.328931 ACTCCCTCCGTCCGATAGTATAA 59.671 47.826 0.00 0.00 0.00 0.98
9414 10475 4.202503 ACTCCCTCCGTCCGATAGTATAAA 60.203 45.833 0.00 0.00 0.00 1.40
9415 10476 4.728772 TCCCTCCGTCCGATAGTATAAAA 58.271 43.478 0.00 0.00 0.00 1.52
9416 10477 5.139727 TCCCTCCGTCCGATAGTATAAAAA 58.860 41.667 0.00 0.00 0.00 1.94
9417 10478 5.010012 TCCCTCCGTCCGATAGTATAAAAAC 59.990 44.000 0.00 0.00 0.00 2.43
9418 10479 4.913924 CCTCCGTCCGATAGTATAAAAACG 59.086 45.833 0.00 0.00 0.00 3.60
9419 10480 5.499139 TCCGTCCGATAGTATAAAAACGT 57.501 39.130 0.00 0.00 0.00 3.99
9420 10481 5.890334 TCCGTCCGATAGTATAAAAACGTT 58.110 37.500 0.00 0.00 0.00 3.99
9421 10482 6.329496 TCCGTCCGATAGTATAAAAACGTTT 58.671 36.000 7.96 7.96 0.00 3.60
9422 10483 6.811170 TCCGTCCGATAGTATAAAAACGTTTT 59.189 34.615 20.26 20.26 0.00 2.43
9423 10484 7.330700 TCCGTCCGATAGTATAAAAACGTTTTT 59.669 33.333 33.94 33.94 42.51 1.94
9424 10485 7.423314 CCGTCCGATAGTATAAAAACGTTTTTG 59.577 37.037 36.92 22.59 40.33 2.44
9425 10486 8.161610 CGTCCGATAGTATAAAAACGTTTTTGA 58.838 33.333 36.92 25.90 40.33 2.69
9426 10487 9.254421 GTCCGATAGTATAAAAACGTTTTTGAC 57.746 33.333 36.92 32.15 40.33 3.18
9427 10488 8.986847 TCCGATAGTATAAAAACGTTTTTGACA 58.013 29.630 36.92 23.94 40.33 3.58
9428 10489 9.043678 CCGATAGTATAAAAACGTTTTTGACAC 57.956 33.333 36.92 29.90 40.33 3.67
9429 10490 9.801714 CGATAGTATAAAAACGTTTTTGACACT 57.198 29.630 36.92 33.10 40.33 3.55
9433 10494 9.706846 AGTATAAAAACGTTTTTGACACTACAC 57.293 29.630 36.92 21.53 40.33 2.90
9434 10495 9.706846 GTATAAAAACGTTTTTGACACTACACT 57.293 29.630 36.92 17.17 40.33 3.55
9435 10496 8.831000 ATAAAAACGTTTTTGACACTACACTC 57.169 30.769 36.92 0.00 40.33 3.51
9436 10497 6.490566 AAAACGTTTTTGACACTACACTCT 57.509 33.333 20.26 0.00 0.00 3.24
9437 10498 7.599630 AAAACGTTTTTGACACTACACTCTA 57.400 32.000 20.26 0.00 0.00 2.43
9438 10499 6.823678 AACGTTTTTGACACTACACTCTAG 57.176 37.500 0.00 0.00 0.00 2.43
9439 10500 5.899299 ACGTTTTTGACACTACACTCTAGT 58.101 37.500 0.00 0.00 0.00 2.57
9453 10514 5.968387 CACTCTAGTGTCAAAAACGTTCT 57.032 39.130 0.00 0.00 40.96 3.01
9454 10515 6.345920 CACTCTAGTGTCAAAAACGTTCTT 57.654 37.500 0.00 0.00 40.96 2.52
9455 10516 7.459394 CACTCTAGTGTCAAAAACGTTCTTA 57.541 36.000 0.00 0.00 40.96 2.10
9456 10517 8.073355 CACTCTAGTGTCAAAAACGTTCTTAT 57.927 34.615 0.00 0.00 40.96 1.73
9457 10518 9.188588 CACTCTAGTGTCAAAAACGTTCTTATA 57.811 33.333 0.00 0.00 40.96 0.98
9458 10519 9.924650 ACTCTAGTGTCAAAAACGTTCTTATAT 57.075 29.630 0.00 0.00 0.00 0.86
9466 10527 9.417284 GTCAAAAACGTTCTTATATTATGGACG 57.583 33.333 0.00 0.00 39.79 4.79
9467 10528 8.605746 TCAAAAACGTTCTTATATTATGGACGG 58.394 33.333 0.00 0.00 38.66 4.79
9468 10529 8.605746 CAAAAACGTTCTTATATTATGGACGGA 58.394 33.333 0.00 0.00 38.66 4.69
9469 10530 7.941795 AAACGTTCTTATATTATGGACGGAG 57.058 36.000 0.00 0.00 38.66 4.63
9470 10531 6.022163 ACGTTCTTATATTATGGACGGAGG 57.978 41.667 0.00 0.00 38.66 4.30
9471 10532 5.047519 ACGTTCTTATATTATGGACGGAGGG 60.048 44.000 0.00 0.00 38.66 4.30
9472 10533 5.184479 CGTTCTTATATTATGGACGGAGGGA 59.816 44.000 0.00 0.00 32.85 4.20
9473 10534 6.625300 CGTTCTTATATTATGGACGGAGGGAG 60.625 46.154 0.00 0.00 32.85 4.30
9474 10535 5.900437 TCTTATATTATGGACGGAGGGAGT 58.100 41.667 0.00 0.00 0.00 3.85
9475 10536 7.036154 TCTTATATTATGGACGGAGGGAGTA 57.964 40.000 0.00 0.00 0.00 2.59
9476 10537 7.472741 TCTTATATTATGGACGGAGGGAGTAA 58.527 38.462 0.00 0.00 0.00 2.24
9477 10538 5.997384 ATATTATGGACGGAGGGAGTAAC 57.003 43.478 0.00 0.00 0.00 2.50
9478 10539 2.832643 TATGGACGGAGGGAGTAACA 57.167 50.000 0.00 0.00 0.00 2.41
9479 10540 1.946984 ATGGACGGAGGGAGTAACAA 58.053 50.000 0.00 0.00 0.00 2.83
9480 10541 1.719529 TGGACGGAGGGAGTAACAAA 58.280 50.000 0.00 0.00 0.00 2.83
9481 10542 2.262637 TGGACGGAGGGAGTAACAAAT 58.737 47.619 0.00 0.00 0.00 2.32
9482 10543 3.443052 TGGACGGAGGGAGTAACAAATA 58.557 45.455 0.00 0.00 0.00 1.40
9483 10544 3.839490 TGGACGGAGGGAGTAACAAATAA 59.161 43.478 0.00 0.00 0.00 1.40
9484 10545 4.286549 TGGACGGAGGGAGTAACAAATAAA 59.713 41.667 0.00 0.00 0.00 1.40
9485 10546 4.633126 GGACGGAGGGAGTAACAAATAAAC 59.367 45.833 0.00 0.00 0.00 2.01
9486 10547 5.485620 GACGGAGGGAGTAACAAATAAACT 58.514 41.667 0.00 0.00 0.00 2.66
9487 10548 5.872963 ACGGAGGGAGTAACAAATAAACTT 58.127 37.500 0.00 0.00 0.00 2.66
9488 10549 7.008021 ACGGAGGGAGTAACAAATAAACTTA 57.992 36.000 0.00 0.00 0.00 2.24
9489 10550 6.875726 ACGGAGGGAGTAACAAATAAACTTAC 59.124 38.462 0.00 0.00 0.00 2.34
9490 10551 6.875195 CGGAGGGAGTAACAAATAAACTTACA 59.125 38.462 0.00 0.00 0.00 2.41
9491 10552 7.551617 CGGAGGGAGTAACAAATAAACTTACAT 59.448 37.037 0.00 0.00 0.00 2.29
9492 10553 8.674607 GGAGGGAGTAACAAATAAACTTACATG 58.325 37.037 0.00 0.00 0.00 3.21
9493 10554 9.444600 GAGGGAGTAACAAATAAACTTACATGA 57.555 33.333 0.00 0.00 0.00 3.07
9494 10555 9.802039 AGGGAGTAACAAATAAACTTACATGAA 57.198 29.630 0.00 0.00 0.00 2.57
9508 10569 8.511604 AACTTACATGAAGAGGTATTTCCATG 57.488 34.615 0.00 0.00 38.65 3.66
9509 10570 7.056635 ACTTACATGAAGAGGTATTTCCATGG 58.943 38.462 4.97 4.97 38.65 3.66
9510 10571 5.456921 ACATGAAGAGGTATTTCCATGGT 57.543 39.130 12.58 0.00 39.02 3.55
9511 10572 6.575244 ACATGAAGAGGTATTTCCATGGTA 57.425 37.500 12.58 0.00 39.02 3.25
9512 10573 6.595682 ACATGAAGAGGTATTTCCATGGTAG 58.404 40.000 12.58 0.00 39.02 3.18
9513 10574 6.158695 ACATGAAGAGGTATTTCCATGGTAGT 59.841 38.462 12.58 0.91 39.02 2.73
9514 10575 5.989477 TGAAGAGGTATTTCCATGGTAGTG 58.011 41.667 12.58 0.00 39.02 2.74
9515 10576 5.724370 TGAAGAGGTATTTCCATGGTAGTGA 59.276 40.000 12.58 0.00 39.02 3.41
9516 10577 6.214615 TGAAGAGGTATTTCCATGGTAGTGAA 59.785 38.462 12.58 0.00 39.02 3.18
9517 10578 5.990668 AGAGGTATTTCCATGGTAGTGAAC 58.009 41.667 12.58 4.10 39.02 3.18
9518 10579 5.726793 AGAGGTATTTCCATGGTAGTGAACT 59.273 40.000 12.58 2.63 39.02 3.01
9519 10580 6.901300 AGAGGTATTTCCATGGTAGTGAACTA 59.099 38.462 12.58 0.00 39.02 2.24
9520 10581 7.569111 AGAGGTATTTCCATGGTAGTGAACTAT 59.431 37.037 12.58 0.00 39.02 2.12
9521 10582 8.102484 AGGTATTTCCATGGTAGTGAACTATT 57.898 34.615 12.58 0.00 39.02 1.73
9522 10583 8.211629 AGGTATTTCCATGGTAGTGAACTATTC 58.788 37.037 12.58 0.00 39.02 1.75
9523 10584 7.990886 GGTATTTCCATGGTAGTGAACTATTCA 59.009 37.037 12.58 0.00 35.06 2.57
9524 10585 9.046296 GTATTTCCATGGTAGTGAACTATTCAG 57.954 37.037 12.58 0.00 41.01 3.02
9525 10586 6.620877 TTCCATGGTAGTGAACTATTCAGT 57.379 37.500 12.58 4.43 44.99 3.41
9526 10587 6.222038 TCCATGGTAGTGAACTATTCAGTC 57.778 41.667 12.58 0.00 42.16 3.51
9527 10588 5.128827 TCCATGGTAGTGAACTATTCAGTCC 59.871 44.000 12.58 5.42 42.16 3.85
9528 10589 5.129485 CCATGGTAGTGAACTATTCAGTCCT 59.871 44.000 2.57 0.00 42.16 3.85
9529 10590 5.916661 TGGTAGTGAACTATTCAGTCCTC 57.083 43.478 2.21 0.00 42.16 3.71
9530 10591 5.330233 TGGTAGTGAACTATTCAGTCCTCA 58.670 41.667 2.21 0.00 42.16 3.86
9531 10592 5.419155 TGGTAGTGAACTATTCAGTCCTCAG 59.581 44.000 2.21 0.00 42.16 3.35
9532 10593 5.419471 GGTAGTGAACTATTCAGTCCTCAGT 59.581 44.000 2.21 0.00 42.16 3.41
9533 10594 6.071278 GGTAGTGAACTATTCAGTCCTCAGTT 60.071 42.308 2.21 0.00 42.16 3.16
9534 10595 7.122353 GGTAGTGAACTATTCAGTCCTCAGTTA 59.878 40.741 2.21 0.00 42.16 2.24
9535 10596 6.926313 AGTGAACTATTCAGTCCTCAGTTAC 58.074 40.000 0.00 0.00 39.00 2.50
9536 10597 5.800941 GTGAACTATTCAGTCCTCAGTTACG 59.199 44.000 0.00 0.00 41.01 3.18
9537 10598 5.708697 TGAACTATTCAGTCCTCAGTTACGA 59.291 40.000 0.00 0.00 34.08 3.43
9538 10599 6.377429 TGAACTATTCAGTCCTCAGTTACGAT 59.623 38.462 0.00 0.00 34.08 3.73
9539 10600 7.555195 TGAACTATTCAGTCCTCAGTTACGATA 59.445 37.037 0.00 0.00 34.08 2.92
9540 10601 7.499321 ACTATTCAGTCCTCAGTTACGATAG 57.501 40.000 0.00 0.00 46.19 2.08
9541 10602 7.281098 ACTATTCAGTCCTCAGTTACGATAGA 58.719 38.462 0.00 0.00 41.38 1.98
9542 10603 6.627395 ATTCAGTCCTCAGTTACGATAGAG 57.373 41.667 0.00 0.00 41.38 2.43
9543 10604 5.100344 TCAGTCCTCAGTTACGATAGAGT 57.900 43.478 0.00 0.00 41.38 3.24
9544 10605 6.231258 TCAGTCCTCAGTTACGATAGAGTA 57.769 41.667 0.00 0.00 41.38 2.59
9545 10606 6.647229 TCAGTCCTCAGTTACGATAGAGTAA 58.353 40.000 0.00 0.00 41.38 2.24
9546 10607 7.108194 TCAGTCCTCAGTTACGATAGAGTAAA 58.892 38.462 0.00 0.00 38.19 2.01
9547 10608 7.609146 TCAGTCCTCAGTTACGATAGAGTAAAA 59.391 37.037 0.00 0.00 38.19 1.52
9548 10609 8.242053 CAGTCCTCAGTTACGATAGAGTAAAAA 58.758 37.037 0.00 0.00 38.19 1.94
9549 10610 8.968969 AGTCCTCAGTTACGATAGAGTAAAAAT 58.031 33.333 0.00 0.00 38.19 1.82
9550 10611 9.021863 GTCCTCAGTTACGATAGAGTAAAAATG 57.978 37.037 0.00 0.00 38.19 2.32
9551 10612 7.705325 TCCTCAGTTACGATAGAGTAAAAATGC 59.295 37.037 0.00 0.00 38.19 3.56
9552 10613 7.491372 CCTCAGTTACGATAGAGTAAAAATGCA 59.509 37.037 0.00 0.00 38.19 3.96
9553 10614 8.942338 TCAGTTACGATAGAGTAAAAATGCAT 57.058 30.769 0.00 0.00 38.19 3.96
9554 10615 8.817100 TCAGTTACGATAGAGTAAAAATGCATG 58.183 33.333 0.00 0.00 38.19 4.06
9555 10616 7.584123 CAGTTACGATAGAGTAAAAATGCATGC 59.416 37.037 11.82 11.82 38.19 4.06
9556 10617 7.279981 AGTTACGATAGAGTAAAAATGCATGCA 59.720 33.333 25.04 25.04 38.19 3.96
9557 10618 6.435430 ACGATAGAGTAAAAATGCATGCAA 57.565 33.333 26.68 4.34 41.38 4.08
9558 10619 6.258160 ACGATAGAGTAAAAATGCATGCAAC 58.742 36.000 26.68 17.78 41.38 4.17
9559 10620 6.094048 ACGATAGAGTAAAAATGCATGCAACT 59.906 34.615 26.68 22.46 41.38 3.16
9560 10621 6.630443 CGATAGAGTAAAAATGCATGCAACTC 59.370 38.462 29.60 29.60 39.76 3.01
9561 10622 5.710513 AGAGTAAAAATGCATGCAACTCA 57.289 34.783 34.24 16.60 33.60 3.41
9562 10623 6.088016 AGAGTAAAAATGCATGCAACTCAA 57.912 33.333 34.24 17.73 33.60 3.02
9563 10624 6.694447 AGAGTAAAAATGCATGCAACTCAAT 58.306 32.000 34.24 21.19 33.60 2.57
9564 10625 6.810182 AGAGTAAAAATGCATGCAACTCAATC 59.190 34.615 34.24 23.00 33.60 2.67
9565 10626 4.914312 AAAAATGCATGCAACTCAATCG 57.086 36.364 26.68 0.00 0.00 3.34
9566 10627 3.581024 AAATGCATGCAACTCAATCGT 57.419 38.095 26.68 0.80 0.00 3.73
9567 10628 2.838386 ATGCATGCAACTCAATCGTC 57.162 45.000 26.68 0.00 0.00 4.20
9568 10629 1.521580 TGCATGCAACTCAATCGTCA 58.478 45.000 20.30 0.00 0.00 4.35
9569 10630 2.086094 TGCATGCAACTCAATCGTCAT 58.914 42.857 20.30 0.00 0.00 3.06
9570 10631 3.269178 TGCATGCAACTCAATCGTCATA 58.731 40.909 20.30 0.00 0.00 2.15
9571 10632 3.878699 TGCATGCAACTCAATCGTCATAT 59.121 39.130 20.30 0.00 0.00 1.78
9572 10633 4.336153 TGCATGCAACTCAATCGTCATATT 59.664 37.500 20.30 0.00 0.00 1.28
9573 10634 4.673761 GCATGCAACTCAATCGTCATATTG 59.326 41.667 14.21 0.00 38.05 1.90
9574 10635 4.277257 TGCAACTCAATCGTCATATTGC 57.723 40.909 0.00 0.00 40.99 3.56
9575 10636 3.688673 TGCAACTCAATCGTCATATTGCA 59.311 39.130 4.73 4.73 46.23 4.08
9576 10637 4.155644 TGCAACTCAATCGTCATATTGCAA 59.844 37.500 0.00 0.00 45.64 4.08
9577 10638 5.094812 GCAACTCAATCGTCATATTGCAAA 58.905 37.500 1.71 0.00 40.46 3.68
9578 10639 5.228635 GCAACTCAATCGTCATATTGCAAAG 59.771 40.000 1.71 0.00 40.46 2.77
9579 10640 5.490139 ACTCAATCGTCATATTGCAAAGG 57.510 39.130 1.71 0.00 36.89 3.11
9580 10641 4.336433 ACTCAATCGTCATATTGCAAAGGG 59.664 41.667 1.71 0.00 36.89 3.95
9581 10642 4.522114 TCAATCGTCATATTGCAAAGGGA 58.478 39.130 1.71 0.00 36.89 4.20
9582 10643 4.946772 TCAATCGTCATATTGCAAAGGGAA 59.053 37.500 1.71 0.00 36.89 3.97
9583 10644 5.417266 TCAATCGTCATATTGCAAAGGGAAA 59.583 36.000 1.71 0.00 36.89 3.13
9584 10645 4.695217 TCGTCATATTGCAAAGGGAAAC 57.305 40.909 1.71 0.00 0.00 2.78
9585 10646 4.075682 TCGTCATATTGCAAAGGGAAACA 58.924 39.130 1.71 0.00 0.00 2.83
9586 10647 4.083003 TCGTCATATTGCAAAGGGAAACAC 60.083 41.667 1.71 0.00 0.00 3.32
9587 10648 4.082787 CGTCATATTGCAAAGGGAAACACT 60.083 41.667 1.71 0.00 0.00 3.55
9588 10649 5.564651 CGTCATATTGCAAAGGGAAACACTT 60.565 40.000 1.71 0.00 0.00 3.16
9589 10650 6.223120 GTCATATTGCAAAGGGAAACACTTT 58.777 36.000 1.71 0.00 38.62 2.66
9590 10651 6.705825 GTCATATTGCAAAGGGAAACACTTTT 59.294 34.615 1.71 0.00 36.09 2.27
9591 10652 6.928492 TCATATTGCAAAGGGAAACACTTTTC 59.072 34.615 1.71 0.00 40.54 2.29
9592 10653 4.543590 TTGCAAAGGGAAACACTTTTCA 57.456 36.364 0.00 0.00 42.72 2.69
9593 10654 4.751767 TGCAAAGGGAAACACTTTTCAT 57.248 36.364 0.00 0.00 42.72 2.57
9594 10655 4.692228 TGCAAAGGGAAACACTTTTCATC 58.308 39.130 0.00 0.00 42.72 2.92
9595 10656 4.161189 TGCAAAGGGAAACACTTTTCATCA 59.839 37.500 0.00 0.00 42.72 3.07
9596 10657 4.746611 GCAAAGGGAAACACTTTTCATCAG 59.253 41.667 0.00 0.00 42.72 2.90
9597 10658 5.451798 GCAAAGGGAAACACTTTTCATCAGA 60.452 40.000 0.00 0.00 42.72 3.27
9598 10659 6.211515 CAAAGGGAAACACTTTTCATCAGAG 58.788 40.000 0.00 0.00 42.72 3.35
9599 10660 4.401925 AGGGAAACACTTTTCATCAGAGG 58.598 43.478 0.00 0.00 42.72 3.69
9600 10661 4.141158 AGGGAAACACTTTTCATCAGAGGT 60.141 41.667 0.00 0.00 42.72 3.85
9601 10662 4.216472 GGGAAACACTTTTCATCAGAGGTC 59.784 45.833 0.00 0.00 42.72 3.85
9602 10663 5.066593 GGAAACACTTTTCATCAGAGGTCT 58.933 41.667 0.00 0.00 42.72 3.85
9603 10664 5.049129 GGAAACACTTTTCATCAGAGGTCTG 60.049 44.000 0.10 0.10 42.72 3.51
9604 10665 5.760253 GAAACACTTTTCATCAGAGGTCTGA 59.240 40.000 12.03 12.03 43.82 3.27
9617 10678 6.595772 CAGAGGTCTGATTTATTTCCTTCG 57.404 41.667 0.22 0.00 46.59 3.79
9618 10679 6.109359 CAGAGGTCTGATTTATTTCCTTCGT 58.891 40.000 0.22 0.00 46.59 3.85
9619 10680 6.256757 CAGAGGTCTGATTTATTTCCTTCGTC 59.743 42.308 0.22 0.00 46.59 4.20
9620 10681 6.049955 AGGTCTGATTTATTTCCTTCGTCA 57.950 37.500 0.00 0.00 0.00 4.35
9621 10682 6.109359 AGGTCTGATTTATTTCCTTCGTCAG 58.891 40.000 0.00 0.00 34.45 3.51
9622 10683 6.070767 AGGTCTGATTTATTTCCTTCGTCAGA 60.071 38.462 0.00 0.00 38.50 3.27
9624 10685 6.106673 TCTGATTTATTTCCTTCGTCAGACC 58.893 40.000 0.00 0.00 36.61 3.85
9625 10686 5.800296 TGATTTATTTCCTTCGTCAGACCA 58.200 37.500 0.00 0.00 0.00 4.02
9626 10687 6.234920 TGATTTATTTCCTTCGTCAGACCAA 58.765 36.000 0.00 0.00 0.00 3.67
9627 10688 6.884295 TGATTTATTTCCTTCGTCAGACCAAT 59.116 34.615 0.00 0.00 0.00 3.16
9628 10689 6.737254 TTTATTTCCTTCGTCAGACCAATC 57.263 37.500 0.00 0.00 0.00 2.67
9629 10690 4.559862 ATTTCCTTCGTCAGACCAATCT 57.440 40.909 0.00 0.00 34.57 2.40
9630 10691 4.351874 TTTCCTTCGTCAGACCAATCTT 57.648 40.909 0.00 0.00 30.42 2.40
9631 10692 5.477607 TTTCCTTCGTCAGACCAATCTTA 57.522 39.130 0.00 0.00 30.42 2.10
9632 10693 5.677319 TTCCTTCGTCAGACCAATCTTAT 57.323 39.130 0.00 0.00 30.42 1.73
9633 10694 6.785337 TTCCTTCGTCAGACCAATCTTATA 57.215 37.500 0.00 0.00 30.42 0.98
9634 10695 6.978674 TCCTTCGTCAGACCAATCTTATAT 57.021 37.500 0.00 0.00 30.42 0.86
9635 10696 6.982852 TCCTTCGTCAGACCAATCTTATATC 58.017 40.000 0.00 0.00 30.42 1.63
9636 10697 6.549736 TCCTTCGTCAGACCAATCTTATATCA 59.450 38.462 0.00 0.00 30.42 2.15
9637 10698 7.233553 TCCTTCGTCAGACCAATCTTATATCAT 59.766 37.037 0.00 0.00 30.42 2.45
9638 10699 7.875041 CCTTCGTCAGACCAATCTTATATCATT 59.125 37.037 0.00 0.00 30.42 2.57
9639 10700 8.593492 TTCGTCAGACCAATCTTATATCATTG 57.407 34.615 0.00 0.00 30.42 2.82
9640 10701 7.951591 TCGTCAGACCAATCTTATATCATTGA 58.048 34.615 0.00 0.00 32.56 2.57
9641 10702 8.588472 TCGTCAGACCAATCTTATATCATTGAT 58.412 33.333 4.28 4.28 32.56 2.57
9642 10703 9.212641 CGTCAGACCAATCTTATATCATTGATT 57.787 33.333 4.14 0.00 32.56 2.57
9644 10705 9.730705 TCAGACCAATCTTATATCATTGATTCC 57.269 33.333 4.14 0.00 32.56 3.01
9645 10706 9.736414 CAGACCAATCTTATATCATTGATTCCT 57.264 33.333 4.14 0.00 32.56 3.36
9653 10714 9.440773 TCTTATATCATTGATTCCTTTCCATCG 57.559 33.333 4.14 0.00 0.00 3.84
9654 10715 9.224267 CTTATATCATTGATTCCTTTCCATCGT 57.776 33.333 4.14 0.00 0.00 3.73
9657 10718 6.866010 TCATTGATTCCTTTCCATCGTATG 57.134 37.500 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.338710 GCGGTGGGTGGCACCTAA 62.339 66.667 33.87 20.90 40.43 2.69
23 24 4.335647 CCTTGAGCAGCGGTGGGT 62.336 66.667 17.54 2.44 0.00 4.51
35 36 3.258228 ATGCTCGCCAGTGCCTTGA 62.258 57.895 0.00 0.00 36.14 3.02
63 64 3.286329 TCTAGTCGGCACCACATACTA 57.714 47.619 0.00 0.00 0.00 1.82
80 81 1.404181 CGGCTACTGTTGCTGCTTCTA 60.404 52.381 13.54 0.00 0.00 2.10
157 158 2.743928 CCGTCCAGCTGCTGTTCC 60.744 66.667 26.41 13.33 0.00 3.62
270 271 3.722295 CCATGCGCCGTTGTTCGT 61.722 61.111 4.18 0.00 37.94 3.85
338 339 1.515952 CTCTGTTCCTCTGCTCGCG 60.516 63.158 0.00 0.00 0.00 5.87
457 458 1.923395 CCCACCAACCCTAGCTCCA 60.923 63.158 0.00 0.00 0.00 3.86
494 496 1.731433 GACGCCGGCAGATACCTACA 61.731 60.000 28.98 0.00 0.00 2.74
657 671 3.070015 CACACTTTGATCTTTTGCCCCTT 59.930 43.478 0.00 0.00 0.00 3.95
700 714 3.756434 CCACCGGTTACTTTGTCATTGAT 59.244 43.478 2.97 0.00 0.00 2.57
702 716 2.351350 GCCACCGGTTACTTTGTCATTG 60.351 50.000 2.97 0.00 0.00 2.82
704 718 1.202830 TGCCACCGGTTACTTTGTCAT 60.203 47.619 2.97 0.00 0.00 3.06
706 720 0.872388 CTGCCACCGGTTACTTTGTC 59.128 55.000 2.97 0.00 0.00 3.18
772 789 4.494484 GGCTAATTCTCGTTGGCATTTTT 58.506 39.130 0.00 0.00 37.32 1.94
774 791 2.427095 GGGCTAATTCTCGTTGGCATTT 59.573 45.455 0.00 0.00 37.32 2.32
775 792 2.024414 GGGCTAATTCTCGTTGGCATT 58.976 47.619 0.00 0.00 37.32 3.56
776 793 1.212935 AGGGCTAATTCTCGTTGGCAT 59.787 47.619 0.00 0.00 37.32 4.40
777 794 0.618458 AGGGCTAATTCTCGTTGGCA 59.382 50.000 0.00 0.00 37.32 4.92
778 795 1.401905 CAAGGGCTAATTCTCGTTGGC 59.598 52.381 0.00 0.00 35.15 4.52
779 796 2.017049 CCAAGGGCTAATTCTCGTTGG 58.983 52.381 10.51 10.51 39.15 3.77
780 797 2.711542 ACCAAGGGCTAATTCTCGTTG 58.288 47.619 0.00 0.00 0.00 4.10
781 798 3.081804 CAACCAAGGGCTAATTCTCGTT 58.918 45.455 0.00 0.00 0.00 3.85
782 799 2.618045 CCAACCAAGGGCTAATTCTCGT 60.618 50.000 0.00 0.00 0.00 4.18
783 800 2.017049 CCAACCAAGGGCTAATTCTCG 58.983 52.381 0.00 0.00 0.00 4.04
784 801 3.017442 GACCAACCAAGGGCTAATTCTC 58.983 50.000 0.00 0.00 32.29 2.87
785 802 3.087370 GACCAACCAAGGGCTAATTCT 57.913 47.619 0.00 0.00 32.29 2.40
792 809 4.617253 AAAAATAAGACCAACCAAGGGC 57.383 40.909 0.00 0.00 36.73 5.19
811 828 1.500512 CGCACGACGGAAGGGAAAAA 61.501 55.000 0.00 0.00 38.44 1.94
812 829 1.957186 CGCACGACGGAAGGGAAAA 60.957 57.895 0.00 0.00 38.44 2.29
813 830 2.356553 CGCACGACGGAAGGGAAA 60.357 61.111 0.00 0.00 38.44 3.13
830 847 4.329256 GTGCTATTTTTAGGTGACGGAGAC 59.671 45.833 0.00 0.00 0.00 3.36
831 848 4.501071 GTGCTATTTTTAGGTGACGGAGA 58.499 43.478 0.00 0.00 0.00 3.71
832 849 3.306166 CGTGCTATTTTTAGGTGACGGAG 59.694 47.826 0.00 0.00 0.00 4.63
833 850 3.056678 TCGTGCTATTTTTAGGTGACGGA 60.057 43.478 0.00 0.00 0.00 4.69
834 851 3.255725 TCGTGCTATTTTTAGGTGACGG 58.744 45.455 0.00 0.00 0.00 4.79
835 852 3.306166 CCTCGTGCTATTTTTAGGTGACG 59.694 47.826 0.00 0.00 0.00 4.35
836 853 3.063588 GCCTCGTGCTATTTTTAGGTGAC 59.936 47.826 0.00 0.00 36.87 3.67
837 854 3.267483 GCCTCGTGCTATTTTTAGGTGA 58.733 45.455 0.00 0.00 36.87 4.02
1089 1106 6.817641 AGAATCAATCAATCAGTCAGTCAGTC 59.182 38.462 0.00 0.00 0.00 3.51
1103 1120 5.360714 GCTAACCATCCCAAGAATCAATCAA 59.639 40.000 0.00 0.00 0.00 2.57
1200 1217 3.740397 TTGTCGGACGCGTCGGAT 61.740 61.111 39.86 9.47 40.29 4.18
1209 1226 2.028484 TGCAGGTCGTTGTCGGAC 59.972 61.111 0.00 0.00 37.69 4.79
1413 1430 4.515567 GGTCTTACAAAAGTGAACTGAGGG 59.484 45.833 0.00 0.00 34.13 4.30
1418 1435 8.044908 TGTCTAAAGGTCTTACAAAAGTGAACT 58.955 33.333 0.00 0.00 34.13 3.01
1433 1450 6.128254 GGTGCTGTCTTAAATGTCTAAAGGTC 60.128 42.308 0.00 0.00 0.00 3.85
1454 1472 5.175673 GCTGAAATTGAACTGTTTTAGGTGC 59.824 40.000 0.00 0.00 0.00 5.01
1520 1538 9.492730 AGGATAAGAAGAGAGAAGAGAGAATTT 57.507 33.333 0.00 0.00 0.00 1.82
1672 1690 0.249398 TACTTTCTGCTTCCCTCGCC 59.751 55.000 0.00 0.00 0.00 5.54
2147 2186 7.816995 TGGCACCAGAAAATAACATACATTTTC 59.183 33.333 10.95 10.95 46.02 2.29
2149 2188 7.238486 TGGCACCAGAAAATAACATACATTT 57.762 32.000 0.00 0.00 0.00 2.32
2152 2191 5.772672 AGTTGGCACCAGAAAATAACATACA 59.227 36.000 0.00 0.00 0.00 2.29
2166 2213 0.107410 ACGAGAACAAGTTGGCACCA 60.107 50.000 7.96 0.00 0.00 4.17
2192 2239 3.153369 TCTGCAAAATAGGTTGGCTCA 57.847 42.857 0.00 0.00 0.00 4.26
2265 2312 4.278310 TCTGTCCATTCTTCCTGTCGATA 58.722 43.478 0.00 0.00 0.00 2.92
2528 2575 6.983307 AGAAAGAGATCACAATGGACTATTCG 59.017 38.462 0.00 0.00 0.00 3.34
3163 3210 5.046376 CCTTGCCCTTTTTCAAGTCCATATT 60.046 40.000 0.00 0.00 38.33 1.28
3252 3302 6.183360 GCCTCTCCTTTTTCAATGTCACTATC 60.183 42.308 0.00 0.00 0.00 2.08
3275 3325 2.433436 ACGACCTAACCATTTCTTGCC 58.567 47.619 0.00 0.00 0.00 4.52
3498 3548 3.204526 GTCATTCTCCTTCATCAGCCTG 58.795 50.000 0.00 0.00 0.00 4.85
3707 3757 6.131972 TGTCTTCCTTCTCCTTCATCAATT 57.868 37.500 0.00 0.00 0.00 2.32
3728 3808 5.063204 TCTCCTTCGTTGACATGAAAATGT 58.937 37.500 0.00 0.00 37.50 2.71
3729 3809 5.611796 TCTCCTTCGTTGACATGAAAATG 57.388 39.130 0.00 0.00 0.00 2.32
3730 3810 5.182001 CCTTCTCCTTCGTTGACATGAAAAT 59.818 40.000 0.00 0.00 0.00 1.82
3731 3811 4.515191 CCTTCTCCTTCGTTGACATGAAAA 59.485 41.667 0.00 0.00 0.00 2.29
3732 3812 4.065088 CCTTCTCCTTCGTTGACATGAAA 58.935 43.478 0.00 0.00 0.00 2.69
3733 3813 3.323691 TCCTTCTCCTTCGTTGACATGAA 59.676 43.478 0.00 0.00 0.00 2.57
3734 3814 2.897326 TCCTTCTCCTTCGTTGACATGA 59.103 45.455 0.00 0.00 0.00 3.07
3735 3815 3.319137 TCCTTCTCCTTCGTTGACATG 57.681 47.619 0.00 0.00 0.00 3.21
3736 3816 3.578716 TCTTCCTTCTCCTTCGTTGACAT 59.421 43.478 0.00 0.00 0.00 3.06
3737 3817 2.963101 TCTTCCTTCTCCTTCGTTGACA 59.037 45.455 0.00 0.00 0.00 3.58
3738 3818 3.662247 TCTTCCTTCTCCTTCGTTGAC 57.338 47.619 0.00 0.00 0.00 3.18
3739 3819 5.995565 TTATCTTCCTTCTCCTTCGTTGA 57.004 39.130 0.00 0.00 0.00 3.18
3740 3820 7.439655 CCTTATTATCTTCCTTCTCCTTCGTTG 59.560 40.741 0.00 0.00 0.00 4.10
3741 3821 7.501844 CCTTATTATCTTCCTTCTCCTTCGTT 58.498 38.462 0.00 0.00 0.00 3.85
3742 3822 6.463190 GCCTTATTATCTTCCTTCTCCTTCGT 60.463 42.308 0.00 0.00 0.00 3.85
3743 3823 5.929415 GCCTTATTATCTTCCTTCTCCTTCG 59.071 44.000 0.00 0.00 0.00 3.79
3744 3824 6.934083 CAGCCTTATTATCTTCCTTCTCCTTC 59.066 42.308 0.00 0.00 0.00 3.46
3745 3825 6.617371 TCAGCCTTATTATCTTCCTTCTCCTT 59.383 38.462 0.00 0.00 0.00 3.36
3746 3826 6.042666 GTCAGCCTTATTATCTTCCTTCTCCT 59.957 42.308 0.00 0.00 0.00 3.69
3747 3827 6.227522 GTCAGCCTTATTATCTTCCTTCTCC 58.772 44.000 0.00 0.00 0.00 3.71
3748 3828 6.042666 AGGTCAGCCTTATTATCTTCCTTCTC 59.957 42.308 0.00 0.00 44.18 2.87
3749 3829 5.908247 AGGTCAGCCTTATTATCTTCCTTCT 59.092 40.000 0.00 0.00 44.18 2.85
3798 3878 5.618056 TGTCTTCATCAGTTGATTGCTTC 57.382 39.130 0.00 0.00 33.34 3.86
3821 3901 6.267928 GCCCTTCTCCTTAGTTGATGTATCTA 59.732 42.308 0.00 0.00 0.00 1.98
4280 4360 5.506708 TGGTCTCTAACTGCTGACTATGTA 58.493 41.667 0.00 0.00 0.00 2.29
4791 4871 9.304731 TCTCATTGAACAATTTTCTGTTTTCTG 57.695 29.630 0.00 0.00 39.63 3.02
4912 4992 8.004087 TCCTGCTTCGTAATACTATGTTAACT 57.996 34.615 7.22 0.00 0.00 2.24
5037 5117 4.525024 TCCTTTTGTTTTGTAGGGTTCGA 58.475 39.130 0.00 0.00 0.00 3.71
5118 5198 6.477669 AATTGCATAGATCTCGCTGTTATG 57.522 37.500 15.80 6.78 0.00 1.90
5126 5206 7.151308 AGAGAAGGTAAATTGCATAGATCTCG 58.849 38.462 0.00 0.00 35.82 4.04
5181 5261 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
5182 5262 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
5183 5263 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
5184 5264 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
5185 5265 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
5186 5266 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
5187 5267 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
5192 5272 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
5193 5273 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
5194 5274 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
5195 5275 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
5196 5276 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
5197 5277 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
5198 5278 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
5199 5279 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
5200 5280 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
5205 5285 0.700226 CGTAATGCGTTTTGCCAACG 59.300 50.000 12.66 12.66 45.60 4.10
5206 5286 0.433115 GCGTAATGCGTTTTGCCAAC 59.567 50.000 0.00 0.00 45.60 3.77
5207 5287 2.802683 GCGTAATGCGTTTTGCCAA 58.197 47.368 0.00 0.00 45.60 4.52
5208 5288 4.542890 GCGTAATGCGTTTTGCCA 57.457 50.000 0.00 0.00 45.60 4.92
5217 5297 3.854286 AAGCGTAGTTATGCGTAATGC 57.146 42.857 0.85 4.64 42.84 3.56
5218 5298 7.096189 ACAGATTAAGCGTAGTTATGCGTAATG 60.096 37.037 21.15 14.93 45.83 1.90
5220 5300 6.197655 CACAGATTAAGCGTAGTTATGCGTAA 59.802 38.462 12.03 12.03 42.94 3.18
5221 5301 5.684184 CACAGATTAAGCGTAGTTATGCGTA 59.316 40.000 0.00 0.00 42.84 4.42
5222 5302 4.503007 CACAGATTAAGCGTAGTTATGCGT 59.497 41.667 0.00 0.00 42.84 5.24
5223 5303 4.606232 GCACAGATTAAGCGTAGTTATGCG 60.606 45.833 0.00 0.00 42.84 4.73
5224 5304 4.270084 TGCACAGATTAAGCGTAGTTATGC 59.730 41.667 0.00 0.00 38.47 3.14
5225 5305 5.966636 TGCACAGATTAAGCGTAGTTATG 57.033 39.130 0.00 0.00 0.00 1.90
5226 5306 7.926555 AGTTATGCACAGATTAAGCGTAGTTAT 59.073 33.333 0.00 0.00 32.03 1.89
5227 5307 7.222031 CAGTTATGCACAGATTAAGCGTAGTTA 59.778 37.037 0.00 0.00 32.03 2.24
5228 5308 6.036083 CAGTTATGCACAGATTAAGCGTAGTT 59.964 38.462 0.00 0.00 32.03 2.24
5229 5309 5.520288 CAGTTATGCACAGATTAAGCGTAGT 59.480 40.000 0.00 0.00 32.03 2.73
5230 5310 5.967469 CAGTTATGCACAGATTAAGCGTAG 58.033 41.667 0.00 0.00 32.03 3.51
5231 5311 5.966636 CAGTTATGCACAGATTAAGCGTA 57.033 39.130 0.00 0.00 0.00 4.42
5232 5312 4.864916 CAGTTATGCACAGATTAAGCGT 57.135 40.909 0.00 0.00 0.00 5.07
5246 5326 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
5247 5327 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
5261 5341 2.911819 TTACTAACCAAAGCGCATGC 57.088 45.000 11.47 7.91 43.24 4.06
5262 5342 3.171277 GCTTTACTAACCAAAGCGCATG 58.829 45.455 11.47 8.38 45.88 4.06
5263 5343 3.487563 GCTTTACTAACCAAAGCGCAT 57.512 42.857 11.47 0.00 45.88 4.73
5264 5344 2.981400 GCTTTACTAACCAAAGCGCA 57.019 45.000 11.47 0.00 45.88 6.09
5268 5348 3.821841 CCTTGCGCTTTACTAACCAAAG 58.178 45.455 9.73 0.00 36.32 2.77
5269 5349 2.030628 GCCTTGCGCTTTACTAACCAAA 60.031 45.455 9.73 0.00 0.00 3.28
5270 5350 1.538075 GCCTTGCGCTTTACTAACCAA 59.462 47.619 9.73 0.00 0.00 3.67
5271 5351 1.161843 GCCTTGCGCTTTACTAACCA 58.838 50.000 9.73 0.00 0.00 3.67
5272 5352 3.990546 GCCTTGCGCTTTACTAACC 57.009 52.632 9.73 0.00 0.00 2.85
5284 5364 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
5285 5365 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
5286 5366 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
5289 5369 3.839642 ATGTGCGTTTTGCCACCGC 62.840 57.895 0.00 0.00 45.60 5.68
5290 5370 0.873743 AAATGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
5291 5371 2.141535 TAAATGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
5292 5372 2.097637 CGTTAAATGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
5293 5373 2.120232 CGTTAAATGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
5294 5374 1.136748 GCGTTAAATGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
5295 5375 1.136748 GGCGTTAAATGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
5296 5376 2.389998 AGGCGTTAAATGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
5297 5377 2.785713 AGGCGTTAAATGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
5298 5378 2.413634 GCTAGGCGTTAAATGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
5299 5379 1.129811 GCTAGGCGTTAAATGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
5300 5380 0.725117 GCTAGGCGTTAAATGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
5301 5381 3.509266 GCTAGGCGTTAAATGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
5323 5403 7.721402 ACTGCATTGTTACCATAGTTCAAAAA 58.279 30.769 0.00 0.00 0.00 1.94
5324 5404 7.283625 ACTGCATTGTTACCATAGTTCAAAA 57.716 32.000 0.00 0.00 0.00 2.44
5325 5405 6.892658 ACTGCATTGTTACCATAGTTCAAA 57.107 33.333 0.00 0.00 0.00 2.69
5326 5406 7.987750 TTACTGCATTGTTACCATAGTTCAA 57.012 32.000 0.00 0.00 0.00 2.69
5327 5407 9.845740 ATATTACTGCATTGTTACCATAGTTCA 57.154 29.630 0.00 0.00 0.00 3.18
5334 5414 9.537192 GTACACTATATTACTGCATTGTTACCA 57.463 33.333 0.00 0.00 0.00 3.25
5335 5415 8.697067 CGTACACTATATTACTGCATTGTTACC 58.303 37.037 0.00 0.00 0.00 2.85
5515 5595 5.631096 GCTAAAAGTTCATGTTCTGAAAGCC 59.369 40.000 0.00 0.00 45.27 4.35
5545 5625 4.936891 AGTTCTTCCATGCAAACAGAAAC 58.063 39.130 0.00 0.00 0.00 2.78
5669 5749 8.723942 AAAGGTCATTTAGTGCTCTATAGTTG 57.276 34.615 0.00 0.00 0.00 3.16
5799 5879 8.912988 ACAAACAAAAGGATATTTCTTCTGTGA 58.087 29.630 1.23 0.00 0.00 3.58
5963 6044 6.384224 CAGAAAACACACACGGACTACTATA 58.616 40.000 0.00 0.00 0.00 1.31
6019 6100 5.484173 ACCATGACTAATGTTGCGTATTG 57.516 39.130 0.00 0.00 34.11 1.90
6311 6395 2.825861 AATTTGCCAGAGTTTGCCAG 57.174 45.000 0.00 0.00 0.00 4.85
6321 6405 2.890311 TGGTTGGTGACTAATTTGCCAG 59.110 45.455 0.00 0.00 0.00 4.85
6329 6413 1.073284 GCCTCCTTGGTTGGTGACTAA 59.927 52.381 0.00 0.00 38.35 2.24
6331 6415 1.456287 GCCTCCTTGGTTGGTGACT 59.544 57.895 0.00 0.00 38.35 3.41
6332 6416 1.603739 GGCCTCCTTGGTTGGTGAC 60.604 63.158 0.00 0.00 38.35 3.67
6333 6417 2.840753 GGGCCTCCTTGGTTGGTGA 61.841 63.158 0.84 0.00 38.35 4.02
6334 6418 2.283173 GGGCCTCCTTGGTTGGTG 60.283 66.667 0.84 0.00 38.35 4.17
6335 6419 1.955458 TTTGGGCCTCCTTGGTTGGT 61.955 55.000 4.53 0.00 38.35 3.67
6336 6420 0.762461 TTTTGGGCCTCCTTGGTTGG 60.762 55.000 4.53 0.00 38.35 3.77
6338 6422 1.343985 ACTTTTTGGGCCTCCTTGGTT 60.344 47.619 4.53 0.00 38.35 3.67
6344 7360 2.963101 AGTTACAACTTTTTGGGCCTCC 59.037 45.455 4.53 0.00 35.21 4.30
6371 7387 3.598327 GGGCAATTGGTGTACCCG 58.402 61.111 7.72 0.00 35.15 5.28
6487 7512 3.512329 TCCCTATCGTGTGCAAGTTAAGA 59.488 43.478 0.00 0.00 0.00 2.10
6845 7885 2.310779 TGAGCCTGTCTCCTGTAACT 57.689 50.000 0.00 0.00 41.18 2.24
7233 8273 7.675161 TGTTACCTGATCCATCAATTCTCTA 57.325 36.000 0.00 0.00 36.18 2.43
7313 8353 7.910162 CACTGCATTTGTCGCTTATTATTAGTT 59.090 33.333 0.00 0.00 0.00 2.24
7348 8388 7.142306 TCATTAGCTAGTTACGCTAGTATGG 57.858 40.000 0.00 0.00 46.81 2.74
7435 8475 5.571784 AATCTTGTGCCACATGACATAAG 57.428 39.130 14.79 8.75 35.51 1.73
7436 8476 5.981088 AAATCTTGTGCCACATGACATAA 57.019 34.783 14.79 0.00 35.51 1.90
7471 8513 8.583810 TTAGATGTCAACAACTGTAACTGTAC 57.416 34.615 3.44 0.00 31.27 2.90
7683 8725 1.570803 AGATCAGAAGCTGCTCCACT 58.429 50.000 1.00 0.11 28.09 4.00
7998 9040 5.654650 ACAACCATGACAAAAGTTCCACTTA 59.345 36.000 0.00 0.00 37.47 2.24
8142 9184 5.398012 GCATCTTACCTGAGGGTTTAGGAAT 60.398 44.000 2.38 0.00 44.73 3.01
8376 9418 3.921677 TCTGGACCGTAGTCAAAACATC 58.078 45.455 0.00 0.00 45.48 3.06
8594 9637 1.135141 TGTTGGCACTGCAACAAGAAC 60.135 47.619 13.36 3.72 38.22 3.01
8768 9811 6.318900 GGGCATAATTACAACAAGCTAGACTT 59.681 38.462 0.00 0.00 40.05 3.01
8817 9860 6.431234 AGAGATTCACAACACCTAAATTGTCC 59.569 38.462 0.00 0.00 36.92 4.02
8820 9863 7.678947 AGAGAGATTCACAACACCTAAATTG 57.321 36.000 0.00 0.00 0.00 2.32
8985 10033 8.432805 CAGACCCTATGAGAAAAATACACCTAT 58.567 37.037 0.00 0.00 0.00 2.57
9079 10134 7.936496 TCCTTGTAGTTGATGAAATTATGCA 57.064 32.000 0.00 0.00 0.00 3.96
9124 10179 6.488344 AGAATGAGAAAAGGTTTCTGGTCTTC 59.512 38.462 7.93 5.82 0.00 2.87
9125 10180 6.368805 AGAATGAGAAAAGGTTTCTGGTCTT 58.631 36.000 7.93 0.00 0.00 3.01
9169 10224 2.080286 TCGAAAGAGAAAGGAAGGCG 57.920 50.000 0.00 0.00 34.84 5.52
9175 10230 4.207891 TGGATCCTTCGAAAGAGAAAGG 57.792 45.455 14.23 0.00 43.69 3.11
9362 10423 4.625311 TGTACATAGTTCATTGCGTCAGTG 59.375 41.667 0.00 0.00 0.00 3.66
9368 10429 7.194278 AGTAGTACTGTACATAGTTCATTGCG 58.806 38.462 19.27 0.00 32.19 4.85
9392 10453 2.493414 ATACTATCGGACGGAGGGAG 57.507 55.000 0.00 0.00 0.00 4.30
9393 10454 4.371624 TTTATACTATCGGACGGAGGGA 57.628 45.455 0.00 0.00 0.00 4.20
9394 10455 5.225642 GTTTTTATACTATCGGACGGAGGG 58.774 45.833 0.00 0.00 0.00 4.30
9395 10456 4.913924 CGTTTTTATACTATCGGACGGAGG 59.086 45.833 0.00 0.00 0.00 4.30
9396 10457 5.514279 ACGTTTTTATACTATCGGACGGAG 58.486 41.667 0.00 0.00 33.95 4.63
9397 10458 5.499139 ACGTTTTTATACTATCGGACGGA 57.501 39.130 0.00 0.00 33.95 4.69
9398 10459 6.573617 AAACGTTTTTATACTATCGGACGG 57.426 37.500 7.96 0.00 33.95 4.79
9399 10460 8.161610 TCAAAAACGTTTTTATACTATCGGACG 58.838 33.333 32.12 18.06 38.23 4.79
9400 10461 9.254421 GTCAAAAACGTTTTTATACTATCGGAC 57.746 33.333 32.12 25.97 38.23 4.79
9401 10462 8.986847 TGTCAAAAACGTTTTTATACTATCGGA 58.013 29.630 32.12 20.87 38.23 4.55
9402 10463 9.043678 GTGTCAAAAACGTTTTTATACTATCGG 57.956 33.333 32.12 19.25 38.23 4.18
9403 10464 9.801714 AGTGTCAAAAACGTTTTTATACTATCG 57.198 29.630 32.12 19.85 38.23 2.92
9407 10468 9.706846 GTGTAGTGTCAAAAACGTTTTTATACT 57.293 29.630 32.12 31.09 38.23 2.12
9408 10469 9.706846 AGTGTAGTGTCAAAAACGTTTTTATAC 57.293 29.630 32.12 29.53 38.23 1.47
9409 10470 9.919348 GAGTGTAGTGTCAAAAACGTTTTTATA 57.081 29.630 32.12 22.38 38.23 0.98
9410 10471 8.671028 AGAGTGTAGTGTCAAAAACGTTTTTAT 58.329 29.630 32.12 19.76 38.23 1.40
9411 10472 8.031848 AGAGTGTAGTGTCAAAAACGTTTTTA 57.968 30.769 32.12 18.43 38.23 1.52
9412 10473 6.905578 AGAGTGTAGTGTCAAAAACGTTTTT 58.094 32.000 28.62 28.62 40.75 1.94
9413 10474 6.490566 AGAGTGTAGTGTCAAAAACGTTTT 57.509 33.333 20.26 20.26 0.00 2.43
9414 10475 6.815142 ACTAGAGTGTAGTGTCAAAAACGTTT 59.185 34.615 7.96 7.96 0.00 3.60
9415 10476 6.255020 CACTAGAGTGTAGTGTCAAAAACGTT 59.745 38.462 17.26 0.00 40.96 3.99
9416 10477 5.747197 CACTAGAGTGTAGTGTCAAAAACGT 59.253 40.000 17.26 0.00 40.96 3.99
9417 10478 6.199043 CACTAGAGTGTAGTGTCAAAAACG 57.801 41.667 17.26 0.00 40.96 3.60
9432 10493 9.924650 ATATAAGAACGTTTTTGACACTAGAGT 57.075 29.630 13.87 0.00 0.00 3.24
9440 10501 9.417284 CGTCCATAATATAAGAACGTTTTTGAC 57.583 33.333 13.87 8.76 0.00 3.18
9441 10502 8.605746 CCGTCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
9442 10503 8.605746 TCCGTCCATAATATAAGAACGTTTTTG 58.394 33.333 13.87 0.00 0.00 2.44
9443 10504 8.721019 TCCGTCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
9444 10505 7.440255 CCTCCGTCCATAATATAAGAACGTTTT 59.560 37.037 0.46 0.00 0.00 2.43
9445 10506 6.927381 CCTCCGTCCATAATATAAGAACGTTT 59.073 38.462 0.46 0.00 0.00 3.60
9446 10507 6.453092 CCTCCGTCCATAATATAAGAACGTT 58.547 40.000 0.00 0.00 0.00 3.99
9447 10508 5.047519 CCCTCCGTCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
9448 10509 5.184479 TCCCTCCGTCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
9449 10510 6.210984 ACTCCCTCCGTCCATAATATAAGAAC 59.789 42.308 0.00 0.00 0.00 3.01
9450 10511 6.320518 ACTCCCTCCGTCCATAATATAAGAA 58.679 40.000 0.00 0.00 0.00 2.52
9451 10512 5.900437 ACTCCCTCCGTCCATAATATAAGA 58.100 41.667 0.00 0.00 0.00 2.10
9452 10513 7.177921 TGTTACTCCCTCCGTCCATAATATAAG 59.822 40.741 0.00 0.00 0.00 1.73
9453 10514 7.011994 TGTTACTCCCTCCGTCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
9454 10515 6.554784 TGTTACTCCCTCCGTCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
9455 10516 5.399991 TGTTACTCCCTCCGTCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
9456 10517 4.806892 TGTTACTCCCTCCGTCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
9457 10518 3.649843 TGTTACTCCCTCCGTCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
9458 10519 3.104519 TGTTACTCCCTCCGTCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
9459 10520 2.832643 TGTTACTCCCTCCGTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
9460 10521 1.946984 TTGTTACTCCCTCCGTCCAT 58.053 50.000 0.00 0.00 0.00 3.41
9461 10522 1.719529 TTTGTTACTCCCTCCGTCCA 58.280 50.000 0.00 0.00 0.00 4.02
9462 10523 4.476628 TTATTTGTTACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
9463 10524 5.485620 AGTTTATTTGTTACTCCCTCCGTC 58.514 41.667 0.00 0.00 0.00 4.79
9464 10525 5.494390 AGTTTATTTGTTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
9465 10526 6.875195 TGTAAGTTTATTTGTTACTCCCTCCG 59.125 38.462 0.00 0.00 0.00 4.63
9466 10527 8.674607 CATGTAAGTTTATTTGTTACTCCCTCC 58.325 37.037 0.00 0.00 0.00 4.30
9467 10528 9.444600 TCATGTAAGTTTATTTGTTACTCCCTC 57.555 33.333 0.00 0.00 0.00 4.30
9468 10529 9.802039 TTCATGTAAGTTTATTTGTTACTCCCT 57.198 29.630 0.00 0.00 0.00 4.20
9482 10543 8.960591 CATGGAAATACCTCTTCATGTAAGTTT 58.039 33.333 0.00 0.00 39.86 2.66
9483 10544 7.557719 CCATGGAAATACCTCTTCATGTAAGTT 59.442 37.037 5.56 0.00 39.86 2.66
9484 10545 7.056635 CCATGGAAATACCTCTTCATGTAAGT 58.943 38.462 5.56 0.00 39.86 2.24
9485 10546 7.056635 ACCATGGAAATACCTCTTCATGTAAG 58.943 38.462 21.47 0.00 39.86 2.34
9486 10547 6.969043 ACCATGGAAATACCTCTTCATGTAA 58.031 36.000 21.47 0.00 39.86 2.41
9487 10548 6.575244 ACCATGGAAATACCTCTTCATGTA 57.425 37.500 21.47 0.00 39.86 2.29
9488 10549 5.456921 ACCATGGAAATACCTCTTCATGT 57.543 39.130 21.47 0.00 39.86 3.21
9489 10550 6.484643 CACTACCATGGAAATACCTCTTCATG 59.515 42.308 21.47 0.00 39.86 3.07
9490 10551 6.386927 TCACTACCATGGAAATACCTCTTCAT 59.613 38.462 21.47 0.00 39.86 2.57
9491 10552 5.724370 TCACTACCATGGAAATACCTCTTCA 59.276 40.000 21.47 0.00 39.86 3.02
9492 10553 6.235231 TCACTACCATGGAAATACCTCTTC 57.765 41.667 21.47 0.00 39.86 2.87
9493 10554 6.215636 AGTTCACTACCATGGAAATACCTCTT 59.784 38.462 21.47 0.00 39.86 2.85
9494 10555 5.726793 AGTTCACTACCATGGAAATACCTCT 59.273 40.000 21.47 4.86 39.86 3.69
9495 10556 5.990668 AGTTCACTACCATGGAAATACCTC 58.009 41.667 21.47 2.51 39.86 3.85
9496 10557 7.691993 ATAGTTCACTACCATGGAAATACCT 57.308 36.000 21.47 8.11 39.86 3.08
9497 10558 7.990886 TGAATAGTTCACTACCATGGAAATACC 59.009 37.037 21.47 2.41 34.08 2.73
9498 10559 8.958119 TGAATAGTTCACTACCATGGAAATAC 57.042 34.615 21.47 8.42 34.08 1.89
9499 10560 8.768397 ACTGAATAGTTCACTACCATGGAAATA 58.232 33.333 21.47 5.71 35.46 1.40
9500 10561 7.633789 ACTGAATAGTTCACTACCATGGAAAT 58.366 34.615 21.47 3.26 35.46 2.17
9501 10562 7.016153 ACTGAATAGTTCACTACCATGGAAA 57.984 36.000 21.47 4.94 35.46 3.13
9502 10563 6.351881 GGACTGAATAGTTCACTACCATGGAA 60.352 42.308 21.47 0.00 37.25 3.53
9503 10564 5.128827 GGACTGAATAGTTCACTACCATGGA 59.871 44.000 21.47 0.67 37.25 3.41
9504 10565 5.129485 AGGACTGAATAGTTCACTACCATGG 59.871 44.000 11.19 11.19 37.25 3.66
9505 10566 6.127338 TGAGGACTGAATAGTTCACTACCATG 60.127 42.308 0.00 0.00 37.25 3.66
9506 10567 5.958380 TGAGGACTGAATAGTTCACTACCAT 59.042 40.000 0.00 0.00 37.25 3.55
9507 10568 5.330233 TGAGGACTGAATAGTTCACTACCA 58.670 41.667 0.00 0.00 37.25 3.25
9508 10569 5.419471 ACTGAGGACTGAATAGTTCACTACC 59.581 44.000 0.00 0.00 37.25 3.18
9509 10570 6.518208 ACTGAGGACTGAATAGTTCACTAC 57.482 41.667 0.00 0.00 37.25 2.73
9510 10571 7.148289 CGTAACTGAGGACTGAATAGTTCACTA 60.148 40.741 0.00 0.00 37.25 2.74
9511 10572 6.349445 CGTAACTGAGGACTGAATAGTTCACT 60.349 42.308 0.00 0.00 37.25 3.41
9512 10573 5.800941 CGTAACTGAGGACTGAATAGTTCAC 59.199 44.000 0.00 0.00 37.25 3.18
9513 10574 5.708697 TCGTAACTGAGGACTGAATAGTTCA 59.291 40.000 0.00 0.00 37.25 3.18
9514 10575 6.192234 TCGTAACTGAGGACTGAATAGTTC 57.808 41.667 0.00 0.00 37.25 3.01
9515 10576 6.777213 ATCGTAACTGAGGACTGAATAGTT 57.223 37.500 0.00 0.00 37.25 2.24
9516 10577 7.281098 TCTATCGTAACTGAGGACTGAATAGT 58.719 38.462 0.00 0.00 40.66 2.12
9517 10578 7.442969 ACTCTATCGTAACTGAGGACTGAATAG 59.557 40.741 0.00 0.00 0.00 1.73
9518 10579 7.281098 ACTCTATCGTAACTGAGGACTGAATA 58.719 38.462 0.00 0.00 0.00 1.75
9519 10580 6.123651 ACTCTATCGTAACTGAGGACTGAAT 58.876 40.000 0.00 0.00 0.00 2.57
9520 10581 5.498393 ACTCTATCGTAACTGAGGACTGAA 58.502 41.667 0.00 0.00 0.00 3.02
9521 10582 5.100344 ACTCTATCGTAACTGAGGACTGA 57.900 43.478 0.00 0.00 0.00 3.41
9522 10583 6.922247 TTACTCTATCGTAACTGAGGACTG 57.078 41.667 0.00 0.00 0.00 3.51
9523 10584 7.934855 TTTTACTCTATCGTAACTGAGGACT 57.065 36.000 0.00 0.00 0.00 3.85
9524 10585 9.021863 CATTTTTACTCTATCGTAACTGAGGAC 57.978 37.037 0.00 0.00 0.00 3.85
9525 10586 7.705325 GCATTTTTACTCTATCGTAACTGAGGA 59.295 37.037 0.00 0.00 0.00 3.71
9526 10587 7.491372 TGCATTTTTACTCTATCGTAACTGAGG 59.509 37.037 0.00 0.00 0.00 3.86
9527 10588 8.407457 TGCATTTTTACTCTATCGTAACTGAG 57.593 34.615 0.00 0.00 0.00 3.35
9528 10589 8.817100 CATGCATTTTTACTCTATCGTAACTGA 58.183 33.333 0.00 0.00 0.00 3.41
9529 10590 7.584123 GCATGCATTTTTACTCTATCGTAACTG 59.416 37.037 14.21 0.00 0.00 3.16
9530 10591 7.279981 TGCATGCATTTTTACTCTATCGTAACT 59.720 33.333 18.46 0.00 0.00 2.24
9531 10592 7.406553 TGCATGCATTTTTACTCTATCGTAAC 58.593 34.615 18.46 0.00 0.00 2.50
9532 10593 7.546778 TGCATGCATTTTTACTCTATCGTAA 57.453 32.000 18.46 0.00 0.00 3.18
9533 10594 7.279981 AGTTGCATGCATTTTTACTCTATCGTA 59.720 33.333 23.37 0.00 0.00 3.43
9534 10595 6.094048 AGTTGCATGCATTTTTACTCTATCGT 59.906 34.615 23.37 0.00 0.00 3.73
9535 10596 6.489675 AGTTGCATGCATTTTTACTCTATCG 58.510 36.000 23.37 0.00 0.00 2.92
9536 10597 7.475015 TGAGTTGCATGCATTTTTACTCTATC 58.525 34.615 33.19 18.77 32.85 2.08
9537 10598 7.395190 TGAGTTGCATGCATTTTTACTCTAT 57.605 32.000 33.19 12.68 32.85 1.98
9538 10599 6.816134 TGAGTTGCATGCATTTTTACTCTA 57.184 33.333 33.19 23.14 32.85 2.43
9539 10600 5.710513 TGAGTTGCATGCATTTTTACTCT 57.289 34.783 33.19 18.38 32.85 3.24
9540 10601 6.237384 CGATTGAGTTGCATGCATTTTTACTC 60.237 38.462 29.87 29.87 32.49 2.59
9541 10602 5.574055 CGATTGAGTTGCATGCATTTTTACT 59.426 36.000 23.37 21.02 0.00 2.24
9542 10603 5.345741 ACGATTGAGTTGCATGCATTTTTAC 59.654 36.000 23.37 16.25 0.00 2.01
9543 10604 5.468592 ACGATTGAGTTGCATGCATTTTTA 58.531 33.333 23.37 2.36 0.00 1.52
9544 10605 4.309099 ACGATTGAGTTGCATGCATTTTT 58.691 34.783 23.37 7.35 0.00 1.94
9545 10606 3.916761 ACGATTGAGTTGCATGCATTTT 58.083 36.364 23.37 10.09 0.00 1.82
9546 10607 3.057386 TGACGATTGAGTTGCATGCATTT 60.057 39.130 23.37 12.89 0.00 2.32
9547 10608 2.488937 TGACGATTGAGTTGCATGCATT 59.511 40.909 23.37 13.30 0.00 3.56
9548 10609 2.086094 TGACGATTGAGTTGCATGCAT 58.914 42.857 23.37 7.51 0.00 3.96
9549 10610 1.521580 TGACGATTGAGTTGCATGCA 58.478 45.000 18.46 18.46 0.00 3.96
9550 10611 2.838386 ATGACGATTGAGTTGCATGC 57.162 45.000 11.82 11.82 0.00 4.06
9551 10612 4.673761 GCAATATGACGATTGAGTTGCATG 59.326 41.667 0.00 0.00 38.83 4.06
9552 10613 4.336153 TGCAATATGACGATTGAGTTGCAT 59.664 37.500 5.84 0.00 43.58 3.96
9553 10614 3.688673 TGCAATATGACGATTGAGTTGCA 59.311 39.130 5.84 5.84 45.44 4.08
9554 10615 4.277257 TGCAATATGACGATTGAGTTGC 57.723 40.909 0.00 0.00 38.83 4.17
9555 10616 5.740569 CCTTTGCAATATGACGATTGAGTTG 59.259 40.000 0.00 0.00 38.83 3.16
9556 10617 5.163622 CCCTTTGCAATATGACGATTGAGTT 60.164 40.000 0.00 0.00 38.83 3.01
9557 10618 4.336433 CCCTTTGCAATATGACGATTGAGT 59.664 41.667 0.00 0.00 38.83 3.41
9558 10619 4.576053 TCCCTTTGCAATATGACGATTGAG 59.424 41.667 0.00 0.00 38.83 3.02
9559 10620 4.522114 TCCCTTTGCAATATGACGATTGA 58.478 39.130 0.00 0.00 38.83 2.57
9560 10621 4.898829 TCCCTTTGCAATATGACGATTG 57.101 40.909 0.00 0.00 39.41 2.67
9561 10622 5.184864 TGTTTCCCTTTGCAATATGACGATT 59.815 36.000 0.00 0.00 0.00 3.34
9562 10623 4.704540 TGTTTCCCTTTGCAATATGACGAT 59.295 37.500 0.00 0.00 0.00 3.73
9563 10624 4.075682 TGTTTCCCTTTGCAATATGACGA 58.924 39.130 0.00 0.00 0.00 4.20
9564 10625 4.082787 AGTGTTTCCCTTTGCAATATGACG 60.083 41.667 0.00 0.00 0.00 4.35
9565 10626 5.391312 AGTGTTTCCCTTTGCAATATGAC 57.609 39.130 0.00 0.00 0.00 3.06
9566 10627 6.418057 AAAGTGTTTCCCTTTGCAATATGA 57.582 33.333 0.00 0.00 31.17 2.15
9567 10628 6.705381 TGAAAAGTGTTTCCCTTTGCAATATG 59.295 34.615 0.00 0.00 42.20 1.78
9568 10629 6.825610 TGAAAAGTGTTTCCCTTTGCAATAT 58.174 32.000 0.00 0.00 42.20 1.28
9569 10630 6.227298 TGAAAAGTGTTTCCCTTTGCAATA 57.773 33.333 0.00 0.00 42.20 1.90
9570 10631 5.096443 TGAAAAGTGTTTCCCTTTGCAAT 57.904 34.783 0.00 0.00 42.20 3.56
9571 10632 4.543590 TGAAAAGTGTTTCCCTTTGCAA 57.456 36.364 0.00 0.00 42.20 4.08
9572 10633 4.161189 TGATGAAAAGTGTTTCCCTTTGCA 59.839 37.500 0.00 0.00 42.20 4.08
9573 10634 4.692228 TGATGAAAAGTGTTTCCCTTTGC 58.308 39.130 0.00 0.00 42.20 3.68
9574 10635 6.147864 TCTGATGAAAAGTGTTTCCCTTTG 57.852 37.500 0.00 0.00 42.20 2.77
9575 10636 5.302823 CCTCTGATGAAAAGTGTTTCCCTTT 59.697 40.000 0.00 0.00 42.20 3.11
9576 10637 4.829492 CCTCTGATGAAAAGTGTTTCCCTT 59.171 41.667 0.00 0.00 42.20 3.95
9577 10638 4.141158 ACCTCTGATGAAAAGTGTTTCCCT 60.141 41.667 0.00 0.00 42.20 4.20
9578 10639 4.145052 ACCTCTGATGAAAAGTGTTTCCC 58.855 43.478 0.00 0.00 42.20 3.97
9579 10640 5.049129 CAGACCTCTGATGAAAAGTGTTTCC 60.049 44.000 0.00 0.00 46.59 3.13
9580 10641 5.995055 CAGACCTCTGATGAAAAGTGTTTC 58.005 41.667 0.00 0.00 46.59 2.78
9594 10655 6.109359 ACGAAGGAAATAAATCAGACCTCTG 58.891 40.000 0.00 0.00 45.08 3.35
9595 10656 6.070767 TGACGAAGGAAATAAATCAGACCTCT 60.071 38.462 0.00 0.00 0.00 3.69
9596 10657 6.106673 TGACGAAGGAAATAAATCAGACCTC 58.893 40.000 0.00 0.00 0.00 3.85
9597 10658 6.049955 TGACGAAGGAAATAAATCAGACCT 57.950 37.500 0.00 0.00 0.00 3.85
9598 10659 6.106673 TCTGACGAAGGAAATAAATCAGACC 58.893 40.000 0.00 0.00 36.94 3.85
9600 10661 6.106673 GGTCTGACGAAGGAAATAAATCAGA 58.893 40.000 1.07 0.00 38.94 3.27
9601 10662 5.874810 TGGTCTGACGAAGGAAATAAATCAG 59.125 40.000 1.07 0.00 34.68 2.90
9602 10663 5.800296 TGGTCTGACGAAGGAAATAAATCA 58.200 37.500 1.07 0.00 0.00 2.57
9603 10664 6.737254 TTGGTCTGACGAAGGAAATAAATC 57.263 37.500 0.82 0.00 0.00 2.17
9604 10665 7.112779 AGATTGGTCTGACGAAGGAAATAAAT 58.887 34.615 10.88 0.00 32.13 1.40
9605 10666 6.472887 AGATTGGTCTGACGAAGGAAATAAA 58.527 36.000 10.88 0.00 32.13 1.40
9606 10667 6.049955 AGATTGGTCTGACGAAGGAAATAA 57.950 37.500 10.88 0.00 32.13 1.40
9607 10668 5.677319 AGATTGGTCTGACGAAGGAAATA 57.323 39.130 10.88 0.00 32.13 1.40
9608 10669 4.559862 AGATTGGTCTGACGAAGGAAAT 57.440 40.909 10.88 0.00 32.13 2.17
9609 10670 4.351874 AAGATTGGTCTGACGAAGGAAA 57.648 40.909 10.88 0.00 34.13 3.13
9610 10671 5.677319 ATAAGATTGGTCTGACGAAGGAA 57.323 39.130 10.88 0.00 34.13 3.36
9611 10672 6.549736 TGATATAAGATTGGTCTGACGAAGGA 59.450 38.462 10.88 0.00 34.13 3.36
9612 10673 6.749139 TGATATAAGATTGGTCTGACGAAGG 58.251 40.000 10.88 0.00 34.13 3.46
9613 10674 8.706936 CAATGATATAAGATTGGTCTGACGAAG 58.293 37.037 10.88 0.00 34.13 3.79
9614 10675 8.421002 TCAATGATATAAGATTGGTCTGACGAA 58.579 33.333 7.70 7.70 34.13 3.85
9615 10676 7.951591 TCAATGATATAAGATTGGTCTGACGA 58.048 34.615 1.07 0.00 34.13 4.20
9616 10677 8.768957 ATCAATGATATAAGATTGGTCTGACG 57.231 34.615 0.00 0.00 34.13 4.35
9618 10679 9.730705 GGAATCAATGATATAAGATTGGTCTGA 57.269 33.333 0.00 0.00 34.13 3.27
9619 10680 9.736414 AGGAATCAATGATATAAGATTGGTCTG 57.264 33.333 0.00 0.00 34.13 3.51
9627 10688 9.440773 CGATGGAAAGGAATCAATGATATAAGA 57.559 33.333 0.00 0.00 0.00 2.10
9628 10689 9.224267 ACGATGGAAAGGAATCAATGATATAAG 57.776 33.333 0.00 0.00 0.00 1.73
9631 10692 9.170734 CATACGATGGAAAGGAATCAATGATAT 57.829 33.333 0.00 0.00 0.00 1.63
9632 10693 8.552083 CATACGATGGAAAGGAATCAATGATA 57.448 34.615 0.00 0.00 0.00 2.15
9633 10694 7.444629 CATACGATGGAAAGGAATCAATGAT 57.555 36.000 0.00 0.00 0.00 2.45
9634 10695 6.866010 CATACGATGGAAAGGAATCAATGA 57.134 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.