Multiple sequence alignment - TraesCS6B01G215800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G215800 chr6B 100.000 5383 0 0 1 5383 295764456 295769838 0.000000e+00 9941.0
1 TraesCS6B01G215800 chr6B 89.439 606 52 11 3 601 706133753 706134353 0.000000e+00 754.0
2 TraesCS6B01G215800 chr6B 93.151 73 5 0 4887 4959 551910665 551910593 2.050000e-19 108.0
3 TraesCS6B01G215800 chr6B 96.970 33 1 0 4955 4987 693813280 693813312 7.530000e-04 56.5
4 TraesCS6B01G215800 chr6D 95.974 4322 79 21 620 4892 178007613 178003338 0.000000e+00 6929.0
5 TraesCS6B01G215800 chr6D 96.273 161 4 2 5039 5197 178000456 178000296 4.130000e-66 263.0
6 TraesCS6B01G215800 chr6D 95.200 125 6 0 5255 5379 429832364 429832240 1.180000e-46 198.0
7 TraesCS6B01G215800 chr6D 92.754 69 5 0 4891 4959 130301063 130300995 3.430000e-17 100.0
8 TraesCS6B01G215800 chr6D 96.226 53 2 0 4841 4893 90112238 90112290 2.670000e-13 87.9
9 TraesCS6B01G215800 chr6D 94.444 54 3 0 4840 4893 63130834 63130781 3.460000e-12 84.2
10 TraesCS6B01G215800 chr6A 97.410 2896 56 9 2012 4892 230708621 230705730 0.000000e+00 4915.0
11 TraesCS6B01G215800 chr6A 95.285 1421 33 11 626 2027 230710087 230708682 0.000000e+00 2222.0
12 TraesCS6B01G215800 chr6A 92.377 223 15 2 4977 5197 230705735 230705513 3.130000e-82 316.0
13 TraesCS6B01G215800 chr6A 84.906 106 11 4 4981 5083 371331209 371331106 9.540000e-18 102.0
14 TraesCS6B01G215800 chr6A 96.226 53 2 0 4841 4893 27171418 27171366 2.670000e-13 87.9
15 TraesCS6B01G215800 chr5D 88.636 616 61 9 1 610 545912297 545911685 0.000000e+00 741.0
16 TraesCS6B01G215800 chr5D 88.350 618 54 15 3 610 230014520 230013911 0.000000e+00 726.0
17 TraesCS6B01G215800 chr5D 87.895 190 6 6 5193 5379 354736396 354736571 1.960000e-49 207.0
18 TraesCS6B01G215800 chr5D 90.769 65 3 3 4830 4893 361648493 361648555 3.460000e-12 84.2
19 TraesCS6B01G215800 chr5D 82.524 103 11 3 4891 4986 548469298 548469400 3.460000e-12 84.2
20 TraesCS6B01G215800 chr5D 87.143 70 7 2 4828 4895 419469269 419469338 1.610000e-10 78.7
21 TraesCS6B01G215800 chr5A 88.436 614 60 11 3 610 489841836 489841228 0.000000e+00 730.0
22 TraesCS6B01G215800 chr5A 100.000 29 0 0 4954 4982 368169391 368169419 3.000000e-03 54.7
23 TraesCS6B01G215800 chr7D 88.331 617 58 13 3 610 1105507 1104896 0.000000e+00 728.0
24 TraesCS6B01G215800 chr7D 84.127 126 11 5 5255 5379 620561468 620561585 4.410000e-21 113.0
25 TraesCS6B01G215800 chr7D 91.304 69 6 0 4891 4959 13294225 13294293 1.600000e-15 95.3
26 TraesCS6B01G215800 chr7D 93.220 59 4 0 4835 4893 580231064 580231122 2.670000e-13 87.9
27 TraesCS6B01G215800 chr7D 81.081 111 18 2 4975 5082 395190102 395189992 9.610000e-13 86.1
28 TraesCS6B01G215800 chr7D 88.571 70 6 1 5015 5082 21838486 21838417 3.460000e-12 84.2
29 TraesCS6B01G215800 chr7D 91.304 46 4 0 4890 4935 33717704 33717659 4.500000e-06 63.9
30 TraesCS6B01G215800 chr7D 100.000 29 0 0 4954 4982 2337944 2337972 3.000000e-03 54.7
31 TraesCS6B01G215800 chr3D 88.633 607 56 11 3 601 594542681 594543282 0.000000e+00 726.0
32 TraesCS6B01G215800 chr3D 92.754 69 5 0 4891 4959 551006273 551006341 3.430000e-17 100.0
33 TraesCS6B01G215800 chr3D 86.957 92 9 3 4994 5082 599177588 599177679 3.430000e-17 100.0
34 TraesCS6B01G215800 chr3D 91.935 62 1 4 4833 4893 613610980 613611038 3.460000e-12 84.2
35 TraesCS6B01G215800 chr2B 88.188 618 59 11 1 610 801188638 801189249 0.000000e+00 725.0
36 TraesCS6B01G215800 chr2B 90.123 81 6 2 4880 4959 135001030 135001109 2.650000e-18 104.0
37 TraesCS6B01G215800 chr2B 92.857 70 5 0 4890 4959 182511914 182511845 9.540000e-18 102.0
38 TraesCS6B01G215800 chr5B 88.006 617 62 9 3 610 682192061 682191448 0.000000e+00 719.0
39 TraesCS6B01G215800 chr5B 91.667 72 6 0 4888 4959 814507 814578 3.430000e-17 100.0
40 TraesCS6B01G215800 chr5B 92.754 69 5 0 4891 4959 592070512 592070444 3.430000e-17 100.0
41 TraesCS6B01G215800 chr5B 92.754 69 5 0 4891 4959 634179365 634179433 3.430000e-17 100.0
42 TraesCS6B01G215800 chr5B 98.113 53 1 0 4841 4893 400531568 400531620 5.740000e-15 93.5
43 TraesCS6B01G215800 chr5B 100.000 29 0 0 4954 4982 286884227 286884199 3.000000e-03 54.7
44 TraesCS6B01G215800 chr4D 87.987 616 63 10 3 610 449735739 449736351 0.000000e+00 717.0
45 TraesCS6B01G215800 chr4D 92.754 69 5 0 4891 4959 16909525 16909593 3.430000e-17 100.0
46 TraesCS6B01G215800 chr4D 92.754 69 5 0 4891 4959 147273900 147273968 3.430000e-17 100.0
47 TraesCS6B01G215800 chr4D 96.429 56 2 0 4837 4892 1232592 1232647 5.740000e-15 93.5
48 TraesCS6B01G215800 chr4D 83.168 101 14 3 4981 5078 30137889 30137989 7.430000e-14 89.8
49 TraesCS6B01G215800 chr1B 71.185 996 228 40 2589 3556 391573542 391574506 1.530000e-45 195.0
50 TraesCS6B01G215800 chr1B 90.278 72 7 0 4888 4959 612936506 612936577 1.600000e-15 95.3
51 TraesCS6B01G215800 chr1B 90.141 71 7 0 4889 4959 266942857 266942927 5.740000e-15 93.5
52 TraesCS6B01G215800 chr1B 92.188 64 4 1 4830 4893 334894676 334894614 7.430000e-14 89.8
53 TraesCS6B01G215800 chr1B 86.076 79 8 2 5004 5079 454913620 454913698 1.240000e-11 82.4
54 TraesCS6B01G215800 chr1B 82.178 101 12 5 4984 5079 640547252 640547351 1.240000e-11 82.4
55 TraesCS6B01G215800 chr1D 71.932 766 175 28 2808 3556 290444846 290445588 2.560000e-43 187.0
56 TraesCS6B01G215800 chr1D 91.935 62 3 1 4832 4893 460183482 460183423 9.610000e-13 86.1
57 TraesCS6B01G215800 chr1D 92.982 57 4 0 4837 4893 457875463 457875407 3.460000e-12 84.2
58 TraesCS6B01G215800 chr1D 94.340 53 0 3 5033 5082 293931795 293931847 1.610000e-10 78.7
59 TraesCS6B01G215800 chr1D 80.392 102 18 2 2589 2689 290444624 290444724 5.780000e-10 76.8
60 TraesCS6B01G215800 chr1A 71.671 766 177 28 2808 3556 362863724 362864466 5.540000e-40 176.0
61 TraesCS6B01G215800 chr1A 96.429 56 2 0 4838 4893 533735532 533735477 5.740000e-15 93.5
62 TraesCS6B01G215800 chr1A 89.189 74 5 3 4886 4959 448898306 448898236 7.430000e-14 89.8
63 TraesCS6B01G215800 chr1A 94.643 56 3 0 4838 4893 495445886 495445941 2.670000e-13 87.9
64 TraesCS6B01G215800 chr1A 82.075 106 16 3 4981 5083 586049283 586049388 2.670000e-13 87.9
65 TraesCS6B01G215800 chr1A 90.625 64 6 0 4890 4953 23821937 23822000 9.610000e-13 86.1
66 TraesCS6B01G215800 chr1A 80.392 102 18 2 2589 2689 362863502 362863602 5.780000e-10 76.8
67 TraesCS6B01G215800 chr1A 86.154 65 9 0 4891 4955 20179424 20179488 2.690000e-08 71.3
68 TraesCS6B01G215800 chr4A 92.857 70 5 0 4890 4959 16982530 16982599 9.540000e-18 102.0
69 TraesCS6B01G215800 chr4A 84.314 102 13 3 4984 5082 655254235 655254134 4.440000e-16 97.1
70 TraesCS6B01G215800 chr4A 93.750 64 3 1 4830 4893 629457750 629457688 1.600000e-15 95.3
71 TraesCS6B01G215800 chr2D 92.754 69 5 0 4891 4959 13492567 13492499 3.430000e-17 100.0
72 TraesCS6B01G215800 chr2D 92.754 69 5 0 4891 4959 68867361 68867429 3.430000e-17 100.0
73 TraesCS6B01G215800 chr2D 83.505 97 12 4 4989 5082 511508946 511508851 2.670000e-13 87.9
74 TraesCS6B01G215800 chr2D 87.324 71 8 1 4823 4893 556927110 556927041 4.470000e-11 80.5
75 TraesCS6B01G215800 chr4B 91.549 71 6 0 4889 4959 43259610 43259680 1.230000e-16 99.0
76 TraesCS6B01G215800 chr4B 91.304 69 6 0 4891 4959 529838358 529838290 1.600000e-15 95.3
77 TraesCS6B01G215800 chr4B 100.000 29 0 0 4955 4983 572156110 572156082 3.000000e-03 54.7
78 TraesCS6B01G215800 chr7B 92.188 64 3 2 4830 4893 734071462 734071523 7.430000e-14 89.8
79 TraesCS6B01G215800 chr7B 82.353 102 14 3 4984 5082 104954541 104954641 9.610000e-13 86.1
80 TraesCS6B01G215800 chr7B 100.000 28 0 0 4956 4983 530005017 530004990 1.000000e-02 52.8
81 TraesCS6B01G215800 chr3B 96.296 54 2 0 4840 4893 373516200 373516147 7.430000e-14 89.8
82 TraesCS6B01G215800 chr3A 82.075 106 15 4 4981 5082 452657082 452657187 2.670000e-13 87.9
83 TraesCS6B01G215800 chr3A 96.875 32 1 0 4955 4986 441195029 441195060 3.000000e-03 54.7
84 TraesCS6B01G215800 chr7A 89.706 68 6 1 4827 4893 152547609 152547676 9.610000e-13 86.1
85 TraesCS6B01G215800 chr7A 93.103 58 3 1 4827 4884 299536179 299536123 3.460000e-12 84.2
86 TraesCS6B01G215800 chr7A 94.595 37 1 1 4950 4986 416470206 416470171 7.530000e-04 56.5
87 TraesCS6B01G215800 chr7A 100.000 28 0 0 4955 4982 408684248 408684275 1.000000e-02 52.8
88 TraesCS6B01G215800 chrUn 88.571 70 6 1 5015 5082 309059195 309059126 3.460000e-12 84.2
89 TraesCS6B01G215800 chrUn 88.571 70 6 2 5015 5082 391833121 391833052 3.460000e-12 84.2
90 TraesCS6B01G215800 chrUn 96.078 51 1 1 4841 4890 23169768 23169818 1.240000e-11 82.4
91 TraesCS6B01G215800 chrUn 90.476 63 4 2 4831 4893 40169942 40169882 1.240000e-11 82.4
92 TraesCS6B01G215800 chrUn 94.340 53 3 0 4841 4893 96464972 96464920 1.240000e-11 82.4
93 TraesCS6B01G215800 chrUn 90.476 63 4 2 4831 4893 195338887 195338947 1.240000e-11 82.4
94 TraesCS6B01G215800 chrUn 94.444 54 2 1 4841 4893 306819724 306819671 1.240000e-11 82.4
95 TraesCS6B01G215800 chrUn 94.340 53 3 0 4841 4893 311695436 311695384 1.240000e-11 82.4
96 TraesCS6B01G215800 chrUn 90.476 63 4 2 4831 4893 403238591 403238531 1.240000e-11 82.4
97 TraesCS6B01G215800 chrUn 90.476 63 4 2 4831 4893 422926134 422926194 1.240000e-11 82.4
98 TraesCS6B01G215800 chrUn 90.476 63 4 2 4831 4893 431172642 431172702 1.240000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G215800 chr6B 295764456 295769838 5382 False 9941.000000 9941 100.0000 1 5383 1 chr6B.!!$F1 5382
1 TraesCS6B01G215800 chr6B 706133753 706134353 600 False 754.000000 754 89.4390 3 601 1 chr6B.!!$F3 598
2 TraesCS6B01G215800 chr6D 178000296 178007613 7317 True 3596.000000 6929 96.1235 620 5197 2 chr6D.!!$R4 4577
3 TraesCS6B01G215800 chr6A 230705513 230710087 4574 True 2484.333333 4915 95.0240 626 5197 3 chr6A.!!$R3 4571
4 TraesCS6B01G215800 chr5D 545911685 545912297 612 True 741.000000 741 88.6360 1 610 1 chr5D.!!$R2 609
5 TraesCS6B01G215800 chr5D 230013911 230014520 609 True 726.000000 726 88.3500 3 610 1 chr5D.!!$R1 607
6 TraesCS6B01G215800 chr5A 489841228 489841836 608 True 730.000000 730 88.4360 3 610 1 chr5A.!!$R1 607
7 TraesCS6B01G215800 chr7D 1104896 1105507 611 True 728.000000 728 88.3310 3 610 1 chr7D.!!$R1 607
8 TraesCS6B01G215800 chr3D 594542681 594543282 601 False 726.000000 726 88.6330 3 601 1 chr3D.!!$F2 598
9 TraesCS6B01G215800 chr2B 801188638 801189249 611 False 725.000000 725 88.1880 1 610 1 chr2B.!!$F2 609
10 TraesCS6B01G215800 chr5B 682191448 682192061 613 True 719.000000 719 88.0060 3 610 1 chr5B.!!$R3 607
11 TraesCS6B01G215800 chr4D 449735739 449736351 612 False 717.000000 717 87.9870 3 610 1 chr4D.!!$F5 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 797 0.119358 AAGGAGGGGTAGCTCTTGGT 59.881 55.0 0.0 0.0 0.00 3.67 F
1293 1336 0.309612 GCAACACCGTACCAACCAAG 59.690 55.0 0.0 0.0 0.00 3.61 F
1294 1337 1.956297 CAACACCGTACCAACCAAGA 58.044 50.0 0.0 0.0 0.00 3.02 F
2827 2976 0.179076 CTCGTCATGGCAGCATGGTA 60.179 55.0 0.0 0.0 35.86 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1621 2.096248 CCGCTGAGGAAGTAGAGAAGT 58.904 52.381 0.00 0.0 45.00 3.01 R
2827 2976 1.145571 TAAGGGGCACACTCTGGTTT 58.854 50.000 0.00 0.0 0.00 3.27 R
3073 3222 1.275657 CGTGTTTGTGGTCTGTCGC 59.724 57.895 0.00 0.0 0.00 5.19 R
4602 4759 1.754226 GCAAGTTGAACTTCCCCACAA 59.246 47.619 7.75 0.0 36.03 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 101 6.731467 ACTAGACCCCATGTTGATATGTTTT 58.269 36.000 0.00 0.00 0.00 2.43
108 112 8.187480 CCCATGTTGATATGTTTTGACGAAATA 58.813 33.333 0.00 0.00 0.00 1.40
152 159 4.991687 TCATGATGTTTACACGTAGTTGCA 59.008 37.500 0.00 0.00 41.61 4.08
156 163 6.823531 TGATGTTTACACGTAGTTGCAATAC 58.176 36.000 0.59 5.75 41.61 1.89
181 188 6.205784 TGCTTAAACTAAAGTTGTCATGTGC 58.794 36.000 0.00 0.00 38.44 4.57
199 207 7.538678 GTCATGTGCCAATTTTAGTTTGTAGAG 59.461 37.037 0.00 0.00 0.00 2.43
204 212 6.015519 TGCCAATTTTAGTTTGTAGAGCATGT 60.016 34.615 0.00 0.00 0.00 3.21
217 225 7.404671 TGTAGAGCATGTCAATTCTAGTACA 57.595 36.000 0.00 0.00 0.00 2.90
283 292 4.940463 AGTGCATGTATCATGGCAATTTC 58.060 39.130 10.96 0.64 38.10 2.17
319 328 8.635765 TCATGGCAAGTCTAGTTTCTTAATTT 57.364 30.769 0.00 0.00 0.00 1.82
389 402 6.883217 AGCTGAAACATATCATGACAACTTCT 59.117 34.615 0.00 0.00 0.00 2.85
427 440 6.265876 TGGCAATTCATATGCAATAGACATGT 59.734 34.615 0.00 0.00 45.60 3.21
493 511 4.499037 TCGAGTTTCGAAGATCTTGTCA 57.501 40.909 14.00 0.00 46.90 3.58
498 516 4.023107 AGTTTCGAAGATCTTGTCACGAGA 60.023 41.667 14.00 7.98 38.42 4.04
610 629 1.864565 CATGGATGCGATAACGTGGA 58.135 50.000 0.00 0.00 41.98 4.02
611 630 2.209273 CATGGATGCGATAACGTGGAA 58.791 47.619 0.00 0.00 41.98 3.53
612 631 1.647346 TGGATGCGATAACGTGGAAC 58.353 50.000 0.00 0.00 41.98 3.62
613 632 1.206132 TGGATGCGATAACGTGGAACT 59.794 47.619 0.00 0.00 41.98 3.01
614 633 2.277084 GGATGCGATAACGTGGAACTT 58.723 47.619 0.00 0.00 41.98 2.66
615 634 2.030457 GGATGCGATAACGTGGAACTTG 59.970 50.000 0.00 0.00 41.98 3.16
616 635 2.157834 TGCGATAACGTGGAACTTGT 57.842 45.000 0.00 0.00 41.98 3.16
617 636 2.063266 TGCGATAACGTGGAACTTGTC 58.937 47.619 0.00 0.00 41.98 3.18
618 637 1.392510 GCGATAACGTGGAACTTGTCC 59.607 52.381 0.00 0.00 42.57 4.02
685 714 1.270358 GGCCTTTTGTCGTCACTCTCT 60.270 52.381 0.00 0.00 0.00 3.10
758 797 0.119358 AAGGAGGGGTAGCTCTTGGT 59.881 55.000 0.00 0.00 0.00 3.67
1200 1239 6.981762 TGCTGTTCAGTACTACTACTAGTC 57.018 41.667 0.00 0.00 34.79 2.59
1201 1240 6.709281 TGCTGTTCAGTACTACTACTAGTCT 58.291 40.000 0.00 0.00 34.79 3.24
1203 1242 7.664731 TGCTGTTCAGTACTACTACTAGTCTTT 59.335 37.037 0.00 0.00 34.79 2.52
1293 1336 0.309612 GCAACACCGTACCAACCAAG 59.690 55.000 0.00 0.00 0.00 3.61
1294 1337 1.956297 CAACACCGTACCAACCAAGA 58.044 50.000 0.00 0.00 0.00 3.02
1295 1338 2.500229 CAACACCGTACCAACCAAGAT 58.500 47.619 0.00 0.00 0.00 2.40
1296 1339 3.666274 CAACACCGTACCAACCAAGATA 58.334 45.455 0.00 0.00 0.00 1.98
1297 1340 4.066490 CAACACCGTACCAACCAAGATAA 58.934 43.478 0.00 0.00 0.00 1.75
1298 1341 4.563140 ACACCGTACCAACCAAGATAAT 57.437 40.909 0.00 0.00 0.00 1.28
1299 1342 5.680594 ACACCGTACCAACCAAGATAATA 57.319 39.130 0.00 0.00 0.00 0.98
1300 1343 5.422145 ACACCGTACCAACCAAGATAATAC 58.578 41.667 0.00 0.00 0.00 1.89
1301 1344 5.188359 ACACCGTACCAACCAAGATAATACT 59.812 40.000 0.00 0.00 0.00 2.12
1302 1345 5.751990 CACCGTACCAACCAAGATAATACTC 59.248 44.000 0.00 0.00 0.00 2.59
1344 1387 9.389755 TCGATTGTGAACATTTCCTTGATTATA 57.610 29.630 0.00 0.00 0.00 0.98
1397 1445 2.704572 AGGCACAGATTAACAGAGCAC 58.295 47.619 0.00 0.00 0.00 4.40
1465 1513 5.041287 CAGCTCGAAAATAATCCGACTGTA 58.959 41.667 0.00 0.00 32.42 2.74
1573 1621 3.070734 GCCCTATGCTCATTCTCTCTTCA 59.929 47.826 0.00 0.00 36.87 3.02
2027 2151 3.788333 ATTCATTTCACCTGGATTGCG 57.212 42.857 0.00 0.00 0.00 4.85
2246 2370 5.726980 ATTCATGTTGGTACTTTGCACAT 57.273 34.783 0.00 0.00 0.00 3.21
2486 2611 7.733969 TCCCTCAAAAATGATTTCACAATTCA 58.266 30.769 0.00 0.00 0.00 2.57
2495 2620 7.951530 ATGATTTCACAATTCAGGTTTCAAC 57.048 32.000 0.00 0.00 0.00 3.18
2827 2976 0.179076 CTCGTCATGGCAGCATGGTA 60.179 55.000 0.00 0.00 35.86 3.25
2898 3047 2.846039 CATGAGAACATGCCTCAAGC 57.154 50.000 18.52 0.96 45.51 4.01
2956 3105 2.360852 AGCATGCTCAGTGTGGCC 60.361 61.111 16.30 0.00 0.00 5.36
3058 3207 3.729716 GCGACTACGAAGATAATGTCCAC 59.270 47.826 0.00 0.00 42.66 4.02
3064 3213 2.419990 CGAAGATAATGTCCACAGCCCA 60.420 50.000 0.00 0.00 0.00 5.36
3448 3597 2.592861 GCCGGTCCAGCCATGATC 60.593 66.667 1.90 0.00 36.97 2.92
3641 3790 2.948979 TGAAACTGGCCAACAAGTACTG 59.051 45.455 7.01 0.00 0.00 2.74
3778 3927 0.935898 CAGCGTCCATCTTGATCAGC 59.064 55.000 0.00 0.00 0.00 4.26
3879 4029 4.038402 ACTGGTTTGCTTTGGAATCTCAAG 59.962 41.667 0.00 0.00 0.00 3.02
3947 4097 5.675684 TTTTCCTTTTCTGCAGGTTTCTT 57.324 34.783 15.13 0.00 32.59 2.52
4178 4328 0.106708 GCGCCCTCACATTCTGGATA 59.893 55.000 0.00 0.00 0.00 2.59
4352 4502 1.164041 CCGAGTTCTTTGCGGTTGGT 61.164 55.000 0.00 0.00 40.17 3.67
4442 4599 4.057432 CTGAAAATTGCAAATTGGACGGT 58.943 39.130 1.71 0.00 0.00 4.83
4448 4605 1.243902 GCAAATTGGACGGTTCCTCA 58.756 50.000 0.00 0.00 43.31 3.86
4602 4759 7.600065 ACTGTACTGTAATCGTCATTAGTTGT 58.400 34.615 3.21 0.00 0.00 3.32
4606 4763 7.117241 ACTGTAATCGTCATTAGTTGTTGTG 57.883 36.000 0.00 0.00 0.00 3.33
4611 4768 3.142951 CGTCATTAGTTGTTGTGGGGAA 58.857 45.455 0.00 0.00 0.00 3.97
4654 4811 6.782082 TTCTGAACTACTATGCTGATGTCT 57.218 37.500 0.00 0.00 0.00 3.41
4775 4936 4.333926 AGAGAGAAGCACTTGTTGTTTGTC 59.666 41.667 0.00 0.00 38.54 3.18
4777 4938 4.641989 AGAGAAGCACTTGTTGTTTGTCAT 59.358 37.500 1.86 0.00 40.12 3.06
4891 5054 9.214957 TCTTTTTAGAGATTTCAATGCGAACTA 57.785 29.630 0.00 0.00 31.73 2.24
4892 5055 9.267096 CTTTTTAGAGATTTCAATGCGAACTAC 57.733 33.333 0.00 0.00 31.73 2.73
4893 5056 8.547967 TTTTAGAGATTTCAATGCGAACTACT 57.452 30.769 0.00 0.00 31.73 2.57
4894 5057 7.757097 TTAGAGATTTCAATGCGAACTACTC 57.243 36.000 0.00 0.00 31.73 2.59
4895 5058 5.971763 AGAGATTTCAATGCGAACTACTCT 58.028 37.500 0.00 0.00 35.07 3.24
4896 5059 6.402222 AGAGATTTCAATGCGAACTACTCTT 58.598 36.000 0.00 0.00 35.74 2.85
4897 5060 6.876257 AGAGATTTCAATGCGAACTACTCTTT 59.124 34.615 0.00 0.00 35.74 2.52
4898 5061 7.064016 AGAGATTTCAATGCGAACTACTCTTTC 59.936 37.037 0.00 0.00 35.74 2.62
4899 5062 5.607119 TTTCAATGCGAACTACTCTTTCC 57.393 39.130 0.00 0.00 31.73 3.13
4900 5063 3.250744 TCAATGCGAACTACTCTTTCCG 58.749 45.455 0.00 0.00 0.00 4.30
4901 5064 2.993899 CAATGCGAACTACTCTTTCCGT 59.006 45.455 0.00 0.00 0.00 4.69
4902 5065 2.806608 TGCGAACTACTCTTTCCGTT 57.193 45.000 0.00 0.00 0.00 4.44
4903 5066 2.669364 TGCGAACTACTCTTTCCGTTC 58.331 47.619 0.00 0.00 34.07 3.95
4909 5072 6.463483 GAACTACTCTTTCCGTTCGAAATT 57.537 37.500 0.00 0.00 39.73 1.82
4910 5073 7.572502 GAACTACTCTTTCCGTTCGAAATTA 57.427 36.000 0.00 0.00 39.73 1.40
4911 5074 6.941218 ACTACTCTTTCCGTTCGAAATTAC 57.059 37.500 0.00 0.00 39.73 1.89
4912 5075 6.685657 ACTACTCTTTCCGTTCGAAATTACT 58.314 36.000 0.00 0.00 39.73 2.24
4913 5076 7.150640 ACTACTCTTTCCGTTCGAAATTACTT 58.849 34.615 0.00 0.00 39.73 2.24
4914 5077 6.224420 ACTCTTTCCGTTCGAAATTACTTG 57.776 37.500 0.00 0.00 39.73 3.16
4915 5078 5.756833 ACTCTTTCCGTTCGAAATTACTTGT 59.243 36.000 0.00 0.00 39.73 3.16
4916 5079 6.073927 ACTCTTTCCGTTCGAAATTACTTGTC 60.074 38.462 0.00 0.00 39.73 3.18
4917 5080 5.987347 TCTTTCCGTTCGAAATTACTTGTCT 59.013 36.000 0.00 0.00 39.73 3.41
4918 5081 5.834239 TTCCGTTCGAAATTACTTGTCTC 57.166 39.130 0.00 0.00 0.00 3.36
4919 5082 3.916172 TCCGTTCGAAATTACTTGTCTCG 59.084 43.478 0.00 0.00 0.00 4.04
4920 5083 3.060363 CCGTTCGAAATTACTTGTCTCGG 59.940 47.826 0.00 0.00 0.00 4.63
4921 5084 3.916172 CGTTCGAAATTACTTGTCTCGGA 59.084 43.478 0.00 0.00 0.00 4.55
4922 5085 4.383649 CGTTCGAAATTACTTGTCTCGGAA 59.616 41.667 0.00 0.00 0.00 4.30
4923 5086 5.107760 CGTTCGAAATTACTTGTCTCGGAAA 60.108 40.000 0.00 0.00 0.00 3.13
4924 5087 6.400727 CGTTCGAAATTACTTGTCTCGGAAAT 60.401 38.462 0.00 0.00 0.00 2.17
4925 5088 6.403333 TCGAAATTACTTGTCTCGGAAATG 57.597 37.500 0.00 0.00 0.00 2.32
4926 5089 5.350365 TCGAAATTACTTGTCTCGGAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
4927 5090 5.350365 CGAAATTACTTGTCTCGGAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
4928 5091 6.037172 CGAAATTACTTGTCTCGGAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
4929 5092 7.223971 CGAAATTACTTGTCTCGGAAATGGATA 59.776 37.037 0.00 0.00 0.00 2.59
4930 5093 8.980481 AAATTACTTGTCTCGGAAATGGATAT 57.020 30.769 0.00 0.00 0.00 1.63
4933 5096 9.877178 ATTACTTGTCTCGGAAATGGATATATC 57.123 33.333 3.96 3.96 0.00 1.63
4934 5097 7.546250 ACTTGTCTCGGAAATGGATATATCT 57.454 36.000 12.42 0.00 0.00 1.98
4935 5098 8.651589 ACTTGTCTCGGAAATGGATATATCTA 57.348 34.615 12.42 6.97 0.00 1.98
4936 5099 8.744652 ACTTGTCTCGGAAATGGATATATCTAG 58.255 37.037 12.42 0.00 0.00 2.43
4937 5100 8.879427 TTGTCTCGGAAATGGATATATCTAGA 57.121 34.615 12.42 0.00 0.00 2.43
4938 5101 8.879427 TGTCTCGGAAATGGATATATCTAGAA 57.121 34.615 12.42 0.00 0.00 2.10
4939 5102 9.480861 TGTCTCGGAAATGGATATATCTAGAAT 57.519 33.333 12.42 0.00 0.00 2.40
4968 5131 8.838452 AATACGTCTAGAGACAAGTAATTTCG 57.162 34.615 10.19 0.00 44.99 3.46
4969 5132 6.492007 ACGTCTAGAGACAAGTAATTTCGA 57.508 37.500 10.19 0.00 44.99 3.71
4970 5133 6.906659 ACGTCTAGAGACAAGTAATTTCGAA 58.093 36.000 10.19 0.00 44.99 3.71
4971 5134 6.800892 ACGTCTAGAGACAAGTAATTTCGAAC 59.199 38.462 10.19 0.00 44.99 3.95
4972 5135 6.022406 CGTCTAGAGACAAGTAATTTCGAACG 60.022 42.308 10.19 0.00 44.99 3.95
4973 5136 6.250951 GTCTAGAGACAAGTAATTTCGAACGG 59.749 42.308 0.00 0.00 44.18 4.44
4974 5137 5.130292 AGAGACAAGTAATTTCGAACGGA 57.870 39.130 0.00 0.00 0.00 4.69
4975 5138 5.162075 AGAGACAAGTAATTTCGAACGGAG 58.838 41.667 0.00 0.00 0.00 4.63
4976 5139 4.243270 AGACAAGTAATTTCGAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
4977 5140 4.021719 AGACAAGTAATTTCGAACGGAGGA 60.022 41.667 0.00 0.00 0.00 3.71
4978 5141 4.634199 ACAAGTAATTTCGAACGGAGGAA 58.366 39.130 0.00 0.00 0.00 3.36
4979 5142 4.689345 ACAAGTAATTTCGAACGGAGGAAG 59.311 41.667 0.00 0.00 0.00 3.46
4980 5143 4.532314 AGTAATTTCGAACGGAGGAAGT 57.468 40.909 0.00 0.00 0.00 3.01
5021 5184 3.823873 ACGGATTCTAGAGCGAGATTCAT 59.176 43.478 0.00 0.00 30.65 2.57
5022 5185 4.083003 ACGGATTCTAGAGCGAGATTCATC 60.083 45.833 0.00 0.00 30.65 2.92
5029 5192 7.290110 TCTAGAGCGAGATTCATCCATTTTA 57.710 36.000 0.00 0.00 0.00 1.52
5043 5206 7.431249 TCATCCATTTTACTCCGTATGTAGTC 58.569 38.462 0.00 0.00 0.00 2.59
5044 5207 6.152932 TCCATTTTACTCCGTATGTAGTCC 57.847 41.667 0.00 0.00 0.00 3.85
5045 5208 5.657745 TCCATTTTACTCCGTATGTAGTCCA 59.342 40.000 0.00 0.00 0.00 4.02
5048 5211 8.311836 CCATTTTACTCCGTATGTAGTCCATAT 58.688 37.037 0.00 0.00 38.29 1.78
5049 5212 9.706691 CATTTTACTCCGTATGTAGTCCATATT 57.293 33.333 0.00 0.00 38.29 1.28
5197 8187 7.547019 TGACACTCAAAACAACATTTGCAATAA 59.453 29.630 0.00 0.00 39.57 1.40
5198 8188 7.908230 ACACTCAAAACAACATTTGCAATAAG 58.092 30.769 0.00 0.00 39.57 1.73
5199 8189 7.011295 ACACTCAAAACAACATTTGCAATAAGG 59.989 33.333 0.00 0.00 39.57 2.69
5200 8190 7.224362 CACTCAAAACAACATTTGCAATAAGGA 59.776 33.333 0.00 0.00 39.57 3.36
5201 8191 7.768120 ACTCAAAACAACATTTGCAATAAGGAA 59.232 29.630 0.00 0.00 39.57 3.36
5202 8192 8.140677 TCAAAACAACATTTGCAATAAGGAAG 57.859 30.769 0.00 0.00 39.57 3.46
5203 8193 6.544038 AAACAACATTTGCAATAAGGAAGC 57.456 33.333 0.00 0.00 0.00 3.86
5204 8194 4.236935 ACAACATTTGCAATAAGGAAGCG 58.763 39.130 0.00 0.00 0.00 4.68
5205 8195 2.879826 ACATTTGCAATAAGGAAGCGC 58.120 42.857 0.00 0.00 0.00 5.92
5206 8196 2.493278 ACATTTGCAATAAGGAAGCGCT 59.507 40.909 2.64 2.64 0.00 5.92
5207 8197 3.694072 ACATTTGCAATAAGGAAGCGCTA 59.306 39.130 12.05 0.00 0.00 4.26
5208 8198 4.201950 ACATTTGCAATAAGGAAGCGCTAG 60.202 41.667 12.05 0.00 0.00 3.42
5209 8199 1.953559 TGCAATAAGGAAGCGCTAGG 58.046 50.000 12.05 0.00 0.00 3.02
5210 8200 0.588737 GCAATAAGGAAGCGCTAGGC 59.411 55.000 12.05 2.83 44.05 3.93
5219 8209 2.501128 GCGCTAGGCATCAGACCA 59.499 61.111 0.00 0.00 42.87 4.02
5220 8210 1.884926 GCGCTAGGCATCAGACCAC 60.885 63.158 0.00 0.00 42.87 4.16
5221 8211 1.819229 CGCTAGGCATCAGACCACT 59.181 57.895 0.00 0.00 0.00 4.00
5222 8212 0.529337 CGCTAGGCATCAGACCACTG 60.529 60.000 0.00 0.00 44.66 3.66
5233 8223 4.039603 TCAGACCACTGATCTCTTCTCA 57.960 45.455 0.00 0.00 46.55 3.27
5234 8224 4.608269 TCAGACCACTGATCTCTTCTCAT 58.392 43.478 0.00 0.00 46.55 2.90
5235 8225 4.644234 TCAGACCACTGATCTCTTCTCATC 59.356 45.833 0.00 0.00 46.55 2.92
5236 8226 4.401837 CAGACCACTGATCTCTTCTCATCA 59.598 45.833 0.00 0.00 46.03 3.07
5237 8227 7.580867 TCAGACCACTGATCTCTTCTCATCAG 61.581 46.154 7.27 7.27 46.55 2.90
5238 8228 4.608269 ACCACTGATCTCTTCTCATCAGA 58.392 43.478 14.38 0.00 46.23 3.27
5239 8229 4.402155 ACCACTGATCTCTTCTCATCAGAC 59.598 45.833 14.38 0.00 46.23 3.51
5240 8230 4.646040 CCACTGATCTCTTCTCATCAGACT 59.354 45.833 14.38 0.00 46.23 3.24
5241 8231 5.827267 CCACTGATCTCTTCTCATCAGACTA 59.173 44.000 14.38 0.00 46.23 2.59
5242 8232 6.016860 CCACTGATCTCTTCTCATCAGACTAG 60.017 46.154 14.38 0.00 46.23 2.57
5243 8233 6.543465 CACTGATCTCTTCTCATCAGACTAGT 59.457 42.308 14.38 0.00 46.23 2.57
5244 8234 6.543465 ACTGATCTCTTCTCATCAGACTAGTG 59.457 42.308 14.38 0.00 46.23 2.74
5245 8235 5.299028 TGATCTCTTCTCATCAGACTAGTGC 59.701 44.000 0.00 0.00 0.00 4.40
5246 8236 4.854173 TCTCTTCTCATCAGACTAGTGCT 58.146 43.478 0.00 0.00 0.00 4.40
5247 8237 5.995446 TCTCTTCTCATCAGACTAGTGCTA 58.005 41.667 0.00 0.00 0.00 3.49
5248 8238 6.054941 TCTCTTCTCATCAGACTAGTGCTAG 58.945 44.000 0.00 4.80 39.04 3.42
5249 8239 5.995446 TCTTCTCATCAGACTAGTGCTAGA 58.005 41.667 12.65 0.00 36.97 2.43
5250 8240 6.600388 TCTTCTCATCAGACTAGTGCTAGAT 58.400 40.000 12.65 0.00 36.97 1.98
5251 8241 6.710295 TCTTCTCATCAGACTAGTGCTAGATC 59.290 42.308 12.65 6.89 36.97 2.75
5252 8242 4.994217 TCTCATCAGACTAGTGCTAGATCG 59.006 45.833 12.65 1.44 36.97 3.69
5253 8243 4.962155 TCATCAGACTAGTGCTAGATCGA 58.038 43.478 12.65 0.00 36.97 3.59
5254 8244 5.368989 TCATCAGACTAGTGCTAGATCGAA 58.631 41.667 12.65 2.58 36.97 3.71
5255 8245 5.468409 TCATCAGACTAGTGCTAGATCGAAG 59.532 44.000 12.65 3.81 36.97 3.79
5256 8246 5.024785 TCAGACTAGTGCTAGATCGAAGA 57.975 43.478 12.65 5.80 37.53 2.87
5257 8247 4.812091 TCAGACTAGTGCTAGATCGAAGAC 59.188 45.833 12.65 0.00 36.47 3.01
5258 8248 4.814234 CAGACTAGTGCTAGATCGAAGACT 59.186 45.833 12.65 5.73 36.47 3.24
5259 8249 5.986741 CAGACTAGTGCTAGATCGAAGACTA 59.013 44.000 12.65 6.39 36.47 2.59
5260 8250 6.145534 CAGACTAGTGCTAGATCGAAGACTAG 59.854 46.154 20.53 20.53 39.49 2.57
5261 8251 5.920903 ACTAGTGCTAGATCGAAGACTAGT 58.079 41.667 21.22 21.22 40.67 2.57
5262 8252 5.756347 ACTAGTGCTAGATCGAAGACTAGTG 59.244 44.000 23.35 12.64 42.73 2.74
5263 8253 3.314080 AGTGCTAGATCGAAGACTAGTGC 59.686 47.826 18.69 13.92 42.51 4.40
5264 8254 3.314080 GTGCTAGATCGAAGACTAGTGCT 59.686 47.826 18.69 0.00 42.51 4.40
5265 8255 4.512198 GTGCTAGATCGAAGACTAGTGCTA 59.488 45.833 18.69 7.28 42.51 3.49
5266 8256 4.752604 TGCTAGATCGAAGACTAGTGCTAG 59.247 45.833 18.69 4.80 42.51 3.42
5267 8257 4.992319 GCTAGATCGAAGACTAGTGCTAGA 59.008 45.833 18.69 2.08 42.51 2.43
5268 8258 5.107220 GCTAGATCGAAGACTAGTGCTAGAC 60.107 48.000 18.69 6.88 42.51 2.59
5269 8259 4.131596 AGATCGAAGACTAGTGCTAGACC 58.868 47.826 12.65 4.74 42.51 3.85
5270 8260 3.345508 TCGAAGACTAGTGCTAGACCA 57.654 47.619 12.65 0.00 36.97 4.02
5271 8261 3.887352 TCGAAGACTAGTGCTAGACCAT 58.113 45.455 12.65 0.00 36.97 3.55
5272 8262 4.270834 TCGAAGACTAGTGCTAGACCATT 58.729 43.478 12.65 0.00 36.97 3.16
5273 8263 4.335874 TCGAAGACTAGTGCTAGACCATTC 59.664 45.833 12.65 6.84 36.97 2.67
5274 8264 4.602995 GAAGACTAGTGCTAGACCATTCG 58.397 47.826 12.65 0.00 36.97 3.34
5275 8265 3.887352 AGACTAGTGCTAGACCATTCGA 58.113 45.455 12.65 0.00 36.97 3.71
5276 8266 4.465886 AGACTAGTGCTAGACCATTCGAT 58.534 43.478 12.65 0.00 36.97 3.59
5277 8267 4.517453 AGACTAGTGCTAGACCATTCGATC 59.483 45.833 12.65 0.00 36.97 3.69
5278 8268 2.783828 AGTGCTAGACCATTCGATCG 57.216 50.000 9.36 9.36 0.00 3.69
5279 8269 2.298610 AGTGCTAGACCATTCGATCGA 58.701 47.619 15.15 15.15 0.00 3.59
5280 8270 2.688446 AGTGCTAGACCATTCGATCGAA 59.312 45.455 30.83 30.83 38.59 3.71
5281 8271 3.319405 AGTGCTAGACCATTCGATCGAAT 59.681 43.478 32.29 32.29 44.73 3.34
5282 8272 4.051922 GTGCTAGACCATTCGATCGAATT 58.948 43.478 34.61 24.17 42.30 2.17
5283 8273 4.508124 GTGCTAGACCATTCGATCGAATTT 59.492 41.667 34.61 25.70 42.30 1.82
5284 8274 5.690409 GTGCTAGACCATTCGATCGAATTTA 59.310 40.000 34.61 23.07 42.30 1.40
5285 8275 5.690409 TGCTAGACCATTCGATCGAATTTAC 59.310 40.000 34.61 26.41 42.30 2.01
5286 8276 5.118817 GCTAGACCATTCGATCGAATTTACC 59.881 44.000 34.61 23.78 42.30 2.85
5287 8277 4.377897 AGACCATTCGATCGAATTTACCC 58.622 43.478 34.61 22.36 42.30 3.69
5288 8278 3.473625 ACCATTCGATCGAATTTACCCC 58.526 45.455 34.61 0.00 42.30 4.95
5289 8279 2.812011 CCATTCGATCGAATTTACCCCC 59.188 50.000 34.61 0.00 42.30 5.40
5290 8280 3.472652 CATTCGATCGAATTTACCCCCA 58.527 45.455 34.61 10.70 42.30 4.96
5291 8281 3.630892 TTCGATCGAATTTACCCCCAA 57.369 42.857 25.96 0.00 0.00 4.12
5292 8282 2.908916 TCGATCGAATTTACCCCCAAC 58.091 47.619 16.99 0.00 0.00 3.77
5293 8283 1.595794 CGATCGAATTTACCCCCAACG 59.404 52.381 10.26 0.00 0.00 4.10
5294 8284 2.635714 GATCGAATTTACCCCCAACGT 58.364 47.619 0.00 0.00 0.00 3.99
5295 8285 2.097680 TCGAATTTACCCCCAACGTC 57.902 50.000 0.00 0.00 0.00 4.34
5296 8286 1.089112 CGAATTTACCCCCAACGTCC 58.911 55.000 0.00 0.00 0.00 4.79
5297 8287 1.089112 GAATTTACCCCCAACGTCCG 58.911 55.000 0.00 0.00 0.00 4.79
5298 8288 0.691904 AATTTACCCCCAACGTCCGA 59.308 50.000 0.00 0.00 0.00 4.55
5299 8289 0.913924 ATTTACCCCCAACGTCCGAT 59.086 50.000 0.00 0.00 0.00 4.18
5300 8290 0.249955 TTTACCCCCAACGTCCGATC 59.750 55.000 0.00 0.00 0.00 3.69
5301 8291 0.615544 TTACCCCCAACGTCCGATCT 60.616 55.000 0.00 0.00 0.00 2.75
5302 8292 1.324740 TACCCCCAACGTCCGATCTG 61.325 60.000 0.00 0.00 0.00 2.90
5303 8293 2.656069 CCCCCAACGTCCGATCTGT 61.656 63.158 0.00 0.00 0.00 3.41
5304 8294 1.295423 CCCCAACGTCCGATCTGTT 59.705 57.895 0.00 0.00 0.00 3.16
5305 8295 0.533491 CCCCAACGTCCGATCTGTTA 59.467 55.000 0.00 0.00 0.00 2.41
5306 8296 1.470979 CCCCAACGTCCGATCTGTTAG 60.471 57.143 0.00 0.00 0.00 2.34
5307 8297 1.470979 CCCAACGTCCGATCTGTTAGG 60.471 57.143 0.00 0.00 0.00 2.69
5308 8298 1.475280 CCAACGTCCGATCTGTTAGGA 59.525 52.381 0.00 0.00 0.00 2.94
5309 8299 2.094390 CCAACGTCCGATCTGTTAGGAA 60.094 50.000 0.00 0.00 35.60 3.36
5310 8300 3.581755 CAACGTCCGATCTGTTAGGAAA 58.418 45.455 0.00 0.00 35.60 3.13
5311 8301 3.227810 ACGTCCGATCTGTTAGGAAAC 57.772 47.619 0.00 0.00 35.60 2.78
5312 8302 2.094338 ACGTCCGATCTGTTAGGAAACC 60.094 50.000 0.00 0.00 35.60 3.27
5313 8303 2.737679 CGTCCGATCTGTTAGGAAACCC 60.738 54.545 0.00 0.00 35.60 4.11
5314 8304 1.835531 TCCGATCTGTTAGGAAACCCC 59.164 52.381 0.00 0.00 34.49 4.95
5315 8305 1.472728 CCGATCTGTTAGGAAACCCCG 60.473 57.143 0.00 0.00 40.87 5.73
5316 8306 1.664873 GATCTGTTAGGAAACCCCGC 58.335 55.000 0.00 0.00 40.87 6.13
5317 8307 0.255033 ATCTGTTAGGAAACCCCGCC 59.745 55.000 0.00 0.00 40.87 6.13
5318 8308 1.743995 CTGTTAGGAAACCCCGCCG 60.744 63.158 0.00 0.00 40.87 6.46
5319 8309 3.129502 GTTAGGAAACCCCGCCGC 61.130 66.667 0.00 0.00 40.87 6.53
5320 8310 3.638316 TTAGGAAACCCCGCCGCA 61.638 61.111 0.00 0.00 40.87 5.69
5321 8311 2.974041 TTAGGAAACCCCGCCGCAT 61.974 57.895 0.00 0.00 40.87 4.73
5322 8312 3.690685 TAGGAAACCCCGCCGCATG 62.691 63.158 0.00 0.00 40.87 4.06
5324 8314 2.828549 GAAACCCCGCCGCATGAT 60.829 61.111 0.00 0.00 0.00 2.45
5325 8315 2.362375 AAACCCCGCCGCATGATT 60.362 55.556 0.00 0.00 0.00 2.57
5326 8316 1.944234 GAAACCCCGCCGCATGATTT 61.944 55.000 0.00 0.00 0.00 2.17
5327 8317 2.224495 AAACCCCGCCGCATGATTTG 62.224 55.000 0.00 0.00 0.00 2.32
5340 8330 3.454375 CATGATTTGCTGGATTGAAGCC 58.546 45.455 0.00 0.00 40.06 4.35
5341 8331 2.811410 TGATTTGCTGGATTGAAGCCT 58.189 42.857 0.00 0.00 40.06 4.58
5342 8332 3.167485 TGATTTGCTGGATTGAAGCCTT 58.833 40.909 0.00 0.00 40.06 4.35
5343 8333 4.343231 TGATTTGCTGGATTGAAGCCTTA 58.657 39.130 0.00 0.00 40.06 2.69
5344 8334 4.771577 TGATTTGCTGGATTGAAGCCTTAA 59.228 37.500 0.00 0.00 40.06 1.85
5345 8335 5.422970 TGATTTGCTGGATTGAAGCCTTAAT 59.577 36.000 0.00 0.00 40.06 1.40
5346 8336 5.743636 TTTGCTGGATTGAAGCCTTAATT 57.256 34.783 0.00 0.00 40.06 1.40
5347 8337 4.724074 TGCTGGATTGAAGCCTTAATTG 57.276 40.909 0.00 0.00 40.06 2.32
5348 8338 3.448301 TGCTGGATTGAAGCCTTAATTGG 59.552 43.478 0.00 0.00 40.06 3.16
5358 8348 2.832672 CCTTAATTGGCTGCTTCGTC 57.167 50.000 0.00 0.00 0.00 4.20
5359 8349 2.083774 CCTTAATTGGCTGCTTCGTCA 58.916 47.619 0.00 0.00 0.00 4.35
5360 8350 2.684881 CCTTAATTGGCTGCTTCGTCAT 59.315 45.455 0.00 0.00 0.00 3.06
5361 8351 3.876914 CCTTAATTGGCTGCTTCGTCATA 59.123 43.478 0.00 0.00 0.00 2.15
5362 8352 4.335315 CCTTAATTGGCTGCTTCGTCATAA 59.665 41.667 0.00 0.00 0.00 1.90
5363 8353 3.764885 AATTGGCTGCTTCGTCATAAC 57.235 42.857 0.00 0.00 0.00 1.89
5364 8354 2.472695 TTGGCTGCTTCGTCATAACT 57.527 45.000 0.00 0.00 0.00 2.24
5365 8355 1.725641 TGGCTGCTTCGTCATAACTG 58.274 50.000 0.00 0.00 0.00 3.16
5366 8356 0.375106 GGCTGCTTCGTCATAACTGC 59.625 55.000 0.00 0.00 0.00 4.40
5367 8357 1.363744 GCTGCTTCGTCATAACTGCT 58.636 50.000 0.00 0.00 0.00 4.24
5368 8358 2.540515 GCTGCTTCGTCATAACTGCTA 58.459 47.619 0.00 0.00 0.00 3.49
5369 8359 2.537625 GCTGCTTCGTCATAACTGCTAG 59.462 50.000 0.00 0.00 0.00 3.42
5370 8360 3.775202 CTGCTTCGTCATAACTGCTAGT 58.225 45.455 0.00 0.00 0.00 2.57
5371 8361 3.511699 TGCTTCGTCATAACTGCTAGTG 58.488 45.455 0.00 0.00 0.00 2.74
5372 8362 3.056821 TGCTTCGTCATAACTGCTAGTGT 60.057 43.478 0.00 0.00 0.00 3.55
5373 8363 3.304559 GCTTCGTCATAACTGCTAGTGTG 59.695 47.826 0.00 0.00 0.00 3.82
5374 8364 2.876091 TCGTCATAACTGCTAGTGTGC 58.124 47.619 0.00 0.00 0.00 4.57
5375 8365 2.230266 TCGTCATAACTGCTAGTGTGCA 59.770 45.455 0.00 0.00 41.05 4.57
5376 8366 3.119137 TCGTCATAACTGCTAGTGTGCAT 60.119 43.478 0.00 0.00 42.48 3.96
5377 8367 3.000623 CGTCATAACTGCTAGTGTGCATG 59.999 47.826 0.00 0.00 42.48 4.06
5378 8368 3.310774 GTCATAACTGCTAGTGTGCATGG 59.689 47.826 0.00 0.00 42.48 3.66
5379 8369 3.055167 TCATAACTGCTAGTGTGCATGGT 60.055 43.478 0.00 0.00 42.48 3.55
5380 8370 4.161377 TCATAACTGCTAGTGTGCATGGTA 59.839 41.667 0.00 0.00 42.48 3.25
5381 8371 2.386661 ACTGCTAGTGTGCATGGTAC 57.613 50.000 0.00 0.00 42.48 3.34
5382 8372 1.280982 CTGCTAGTGTGCATGGTACG 58.719 55.000 0.00 0.00 42.48 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 5.714806 AGACGGATTTAATGGTGAAAATGGT 59.285 36.000 0.00 0.00 0.00 3.55
37 39 5.878116 TCGAGACGGATTTAATGGTGAAAAT 59.122 36.000 0.00 0.00 0.00 1.82
128 134 5.641636 TGCAACTACGTGTAAACATCATGAT 59.358 36.000 1.18 1.18 0.00 2.45
156 163 6.360681 GCACATGACAACTTTAGTTTAAGCAG 59.639 38.462 0.00 0.00 35.83 4.24
181 188 7.592938 TGACATGCTCTACAAACTAAAATTGG 58.407 34.615 0.00 0.00 32.02 3.16
199 207 8.146479 TGATCAATGTACTAGAATTGACATGC 57.854 34.615 16.79 10.54 43.56 4.06
283 292 6.446781 AGACTTGCCATGAATCATAAACTG 57.553 37.500 0.00 0.00 0.00 3.16
389 402 5.718724 TGAATTGCCATGATGTTTACACA 57.281 34.783 0.00 0.00 37.31 3.72
474 492 4.227538 TCGTGACAAGATCTTCGAAACTC 58.772 43.478 12.92 0.00 33.77 3.01
489 507 5.400066 TCACCATTAAATCTCTCGTGACA 57.600 39.130 0.00 0.00 0.00 3.58
493 511 5.121768 CCGTTTTCACCATTAAATCTCTCGT 59.878 40.000 0.00 0.00 0.00 4.18
498 516 7.393234 TGAAGATCCGTTTTCACCATTAAATCT 59.607 33.333 0.00 0.00 0.00 2.40
595 614 2.671396 ACAAGTTCCACGTTATCGCATC 59.329 45.455 0.00 0.00 41.18 3.91
610 629 7.014230 ACAGCTGTGTATTTATTTGGACAAGTT 59.986 33.333 20.97 0.00 34.05 2.66
611 630 6.490040 ACAGCTGTGTATTTATTTGGACAAGT 59.510 34.615 20.97 0.00 34.05 3.16
612 631 6.913170 ACAGCTGTGTATTTATTTGGACAAG 58.087 36.000 20.97 0.00 34.05 3.16
613 632 6.892658 ACAGCTGTGTATTTATTTGGACAA 57.107 33.333 20.97 0.00 34.05 3.18
614 633 7.987750 TTACAGCTGTGTATTTATTTGGACA 57.012 32.000 29.57 0.00 38.98 4.02
615 634 9.855021 ATTTTACAGCTGTGTATTTATTTGGAC 57.145 29.630 29.57 0.00 38.98 4.02
1087 1126 7.891498 AACAAGGTAGTAAAACAAATCTGGT 57.109 32.000 0.00 0.00 0.00 4.00
1130 1169 0.958822 CTCCCAAAACAAGAACCCCG 59.041 55.000 0.00 0.00 0.00 5.73
1207 1246 2.018515 TCACCCGTCTTTTGTTCCAAC 58.981 47.619 0.00 0.00 0.00 3.77
1344 1387 7.372260 AGGATAGCAAGTTTACAGATGAGAT 57.628 36.000 0.00 0.00 0.00 2.75
1397 1445 4.544731 CAGCACCTGAAGACGAAAAGCG 62.545 54.545 0.00 0.00 38.87 4.68
1465 1513 3.474570 GCCACGATGAGCCCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
1573 1621 2.096248 CCGCTGAGGAAGTAGAGAAGT 58.904 52.381 0.00 0.00 45.00 3.01
2027 2151 7.363007 GGGATGAATTTAAAGAAGGGTTCTGTC 60.363 40.741 0.00 0.00 40.59 3.51
2246 2370 6.877855 ACTACTACTACTTCGACATTCTGTGA 59.122 38.462 0.00 0.00 0.00 3.58
2289 2413 9.696917 AACAAGGTCATTTATTAAAGAGCAAAG 57.303 29.630 14.48 9.25 0.00 2.77
2495 2620 8.830580 CCAACACTTAGATTCCAACATACTATG 58.169 37.037 0.00 0.00 0.00 2.23
2827 2976 1.145571 TAAGGGGCACACTCTGGTTT 58.854 50.000 0.00 0.00 0.00 3.27
2898 3047 1.523258 CTCCGCATGCTTCCTCCAG 60.523 63.158 17.13 0.00 0.00 3.86
2956 3105 1.879380 TCAGTTTTTGGGTGCTGATCG 59.121 47.619 0.00 0.00 33.62 3.69
3073 3222 1.275657 CGTGTTTGTGGTCTGTCGC 59.724 57.895 0.00 0.00 0.00 5.19
3343 3492 2.087857 TAAACCCACTGCCCCCTTGG 62.088 60.000 0.00 0.00 37.09 3.61
3641 3790 2.808543 ACTGCACAAGGAAAATCGACTC 59.191 45.455 0.00 0.00 0.00 3.36
3763 3912 3.384146 TGAGAGAGCTGATCAAGATGGAC 59.616 47.826 0.00 0.00 0.00 4.02
3778 3927 3.430098 GCATGAGTAAGGTGGTGAGAGAG 60.430 52.174 0.00 0.00 0.00 3.20
3879 4029 8.649973 ATCGGAAAAAGTGATAATACTGAGAC 57.350 34.615 0.00 0.00 0.00 3.36
3929 4079 5.049129 CAGTAGAAGAAACCTGCAGAAAAGG 60.049 44.000 17.39 0.19 40.93 3.11
3931 4081 4.821805 CCAGTAGAAGAAACCTGCAGAAAA 59.178 41.667 17.39 0.00 0.00 2.29
4094 4244 3.956199 CTGCACATAGAATGTTGGGGATT 59.044 43.478 0.00 0.00 42.70 3.01
4178 4328 6.542370 GGCTGTAGGTAACAATAATGTCACAT 59.458 38.462 0.00 0.00 39.40 3.21
4419 4576 4.057432 CCGTCCAATTTGCAATTTTCAGT 58.943 39.130 0.00 0.00 0.00 3.41
4448 4605 4.211920 TCAAAAGGTTTTCCGTTCCTCAT 58.788 39.130 0.00 0.00 46.35 2.90
4463 4620 8.273780 AGCTATCTCATTTACAACTCAAAAGG 57.726 34.615 0.00 0.00 0.00 3.11
4602 4759 1.754226 GCAAGTTGAACTTCCCCACAA 59.246 47.619 7.75 0.00 36.03 3.33
4606 4763 4.156739 CAGATTAGCAAGTTGAACTTCCCC 59.843 45.833 7.75 0.00 36.03 4.81
4611 4768 7.164122 TCAGAATCAGATTAGCAAGTTGAACT 58.836 34.615 7.16 0.00 0.00 3.01
4775 4936 9.778993 AATGTGTCGAGAAAAATCTTTCATATG 57.221 29.630 0.00 0.00 42.99 1.78
4777 4938 9.611284 CAAATGTGTCGAGAAAAATCTTTCATA 57.389 29.630 0.00 0.00 42.99 2.15
4896 5059 4.383649 CGAGACAAGTAATTTCGAACGGAA 59.616 41.667 0.00 0.00 33.38 4.30
4897 5060 3.916172 CGAGACAAGTAATTTCGAACGGA 59.084 43.478 0.00 0.00 33.38 4.69
4898 5061 3.060363 CCGAGACAAGTAATTTCGAACGG 59.940 47.826 0.00 0.00 33.38 4.44
4899 5062 3.916172 TCCGAGACAAGTAATTTCGAACG 59.084 43.478 0.00 0.00 33.38 3.95
4900 5063 5.834239 TTCCGAGACAAGTAATTTCGAAC 57.166 39.130 0.00 0.00 33.38 3.95
4901 5064 6.128391 CCATTTCCGAGACAAGTAATTTCGAA 60.128 38.462 0.00 0.00 33.38 3.71
4902 5065 5.350365 CCATTTCCGAGACAAGTAATTTCGA 59.650 40.000 0.00 0.00 33.38 3.71
4903 5066 5.350365 TCCATTTCCGAGACAAGTAATTTCG 59.650 40.000 0.00 0.00 0.00 3.46
4904 5067 6.737254 TCCATTTCCGAGACAAGTAATTTC 57.263 37.500 0.00 0.00 0.00 2.17
4905 5068 8.980481 ATATCCATTTCCGAGACAAGTAATTT 57.020 30.769 0.00 0.00 0.00 1.82
4907 5070 9.877178 GATATATCCATTTCCGAGACAAGTAAT 57.123 33.333 0.81 0.00 0.00 1.89
4908 5071 9.090103 AGATATATCCATTTCCGAGACAAGTAA 57.910 33.333 9.18 0.00 0.00 2.24
4909 5072 8.651589 AGATATATCCATTTCCGAGACAAGTA 57.348 34.615 9.18 0.00 0.00 2.24
4910 5073 7.546250 AGATATATCCATTTCCGAGACAAGT 57.454 36.000 9.18 0.00 0.00 3.16
4911 5074 8.961634 TCTAGATATATCCATTTCCGAGACAAG 58.038 37.037 9.18 0.00 0.00 3.16
4912 5075 8.879427 TCTAGATATATCCATTTCCGAGACAA 57.121 34.615 9.18 0.00 0.00 3.18
4913 5076 8.879427 TTCTAGATATATCCATTTCCGAGACA 57.121 34.615 9.18 0.00 0.00 3.41
4948 5111 6.250951 CCGTTCGAAATTACTTGTCTCTAGAC 59.749 42.308 0.00 3.08 44.97 2.59
4949 5112 6.149973 TCCGTTCGAAATTACTTGTCTCTAGA 59.850 38.462 0.00 0.00 0.00 2.43
4950 5113 6.320171 TCCGTTCGAAATTACTTGTCTCTAG 58.680 40.000 0.00 0.00 0.00 2.43
4951 5114 6.258230 TCCGTTCGAAATTACTTGTCTCTA 57.742 37.500 0.00 0.00 0.00 2.43
4952 5115 5.130292 TCCGTTCGAAATTACTTGTCTCT 57.870 39.130 0.00 0.00 0.00 3.10
4953 5116 4.326548 CCTCCGTTCGAAATTACTTGTCTC 59.673 45.833 0.00 0.00 0.00 3.36
4954 5117 4.021719 TCCTCCGTTCGAAATTACTTGTCT 60.022 41.667 0.00 0.00 0.00 3.41
4955 5118 4.240096 TCCTCCGTTCGAAATTACTTGTC 58.760 43.478 0.00 0.00 0.00 3.18
4956 5119 4.261578 TCCTCCGTTCGAAATTACTTGT 57.738 40.909 0.00 0.00 0.00 3.16
4957 5120 4.689345 ACTTCCTCCGTTCGAAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
4958 5121 4.891260 ACTTCCTCCGTTCGAAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
4959 5122 4.532314 ACTTCCTCCGTTCGAAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
4960 5123 5.644644 TCTACTTCCTCCGTTCGAAATTAC 58.355 41.667 0.00 0.00 0.00 1.89
4961 5124 5.902613 TCTACTTCCTCCGTTCGAAATTA 57.097 39.130 0.00 0.00 0.00 1.40
4962 5125 4.796038 TCTACTTCCTCCGTTCGAAATT 57.204 40.909 0.00 0.00 0.00 1.82
4963 5126 5.359009 TGTATCTACTTCCTCCGTTCGAAAT 59.641 40.000 0.00 0.00 0.00 2.17
4964 5127 4.701651 TGTATCTACTTCCTCCGTTCGAAA 59.298 41.667 0.00 0.00 0.00 3.46
4965 5128 4.264253 TGTATCTACTTCCTCCGTTCGAA 58.736 43.478 0.00 0.00 0.00 3.71
4966 5129 3.875727 CTGTATCTACTTCCTCCGTTCGA 59.124 47.826 0.00 0.00 0.00 3.71
4967 5130 3.875727 TCTGTATCTACTTCCTCCGTTCG 59.124 47.826 0.00 0.00 0.00 3.95
4968 5131 5.764131 CATCTGTATCTACTTCCTCCGTTC 58.236 45.833 0.00 0.00 0.00 3.95
4969 5132 4.038162 GCATCTGTATCTACTTCCTCCGTT 59.962 45.833 0.00 0.00 0.00 4.44
4970 5133 3.570550 GCATCTGTATCTACTTCCTCCGT 59.429 47.826 0.00 0.00 0.00 4.69
4971 5134 3.570125 TGCATCTGTATCTACTTCCTCCG 59.430 47.826 0.00 0.00 0.00 4.63
4972 5135 5.736951 ATGCATCTGTATCTACTTCCTCC 57.263 43.478 0.00 0.00 0.00 4.30
4975 5138 9.885934 CGTATATATGCATCTGTATCTACTTCC 57.114 37.037 0.19 0.00 0.00 3.46
4976 5139 9.885934 CCGTATATATGCATCTGTATCTACTTC 57.114 37.037 0.19 0.00 0.00 3.01
4977 5140 9.628500 TCCGTATATATGCATCTGTATCTACTT 57.372 33.333 0.19 0.00 0.00 2.24
4978 5141 9.800572 ATCCGTATATATGCATCTGTATCTACT 57.199 33.333 0.19 0.00 0.00 2.57
5006 5169 7.151308 AGTAAAATGGATGAATCTCGCTCTAG 58.849 38.462 0.00 0.00 0.00 2.43
5029 5192 8.474710 AGTTTAATATGGACTACATACGGAGT 57.525 34.615 0.00 0.00 44.41 3.85
5197 8187 1.045350 TCTGATGCCTAGCGCTTCCT 61.045 55.000 18.68 0.00 40.18 3.36
5198 8188 0.878086 GTCTGATGCCTAGCGCTTCC 60.878 60.000 18.68 4.79 40.18 3.46
5199 8189 0.878086 GGTCTGATGCCTAGCGCTTC 60.878 60.000 18.68 7.26 41.06 3.86
5200 8190 1.144936 GGTCTGATGCCTAGCGCTT 59.855 57.895 18.68 0.00 38.78 4.68
5201 8191 2.060383 TGGTCTGATGCCTAGCGCT 61.060 57.895 17.26 17.26 38.78 5.92
5202 8192 1.884926 GTGGTCTGATGCCTAGCGC 60.885 63.158 0.00 0.00 38.31 5.92
5203 8193 0.529337 CAGTGGTCTGATGCCTAGCG 60.529 60.000 0.00 0.00 43.76 4.26
5204 8194 0.826715 TCAGTGGTCTGATGCCTAGC 59.173 55.000 0.00 0.00 44.58 3.42
5213 8203 4.401837 TGATGAGAAGAGATCAGTGGTCTG 59.598 45.833 11.59 0.00 42.54 3.51
5214 8204 4.608269 TGATGAGAAGAGATCAGTGGTCT 58.392 43.478 5.33 5.33 0.00 3.85
5215 8205 4.644234 TCTGATGAGAAGAGATCAGTGGTC 59.356 45.833 0.00 0.00 44.08 4.02
5216 8206 4.402155 GTCTGATGAGAAGAGATCAGTGGT 59.598 45.833 0.00 0.00 44.08 4.16
5217 8207 4.646040 AGTCTGATGAGAAGAGATCAGTGG 59.354 45.833 0.00 0.00 44.08 4.00
5218 8208 5.840243 AGTCTGATGAGAAGAGATCAGTG 57.160 43.478 0.00 0.00 44.08 3.66
5219 8209 6.543465 CACTAGTCTGATGAGAAGAGATCAGT 59.457 42.308 0.00 0.00 44.08 3.41
5220 8210 6.513884 GCACTAGTCTGATGAGAAGAGATCAG 60.514 46.154 0.00 0.00 44.76 2.90
5221 8211 5.299028 GCACTAGTCTGATGAGAAGAGATCA 59.701 44.000 0.00 0.00 0.00 2.92
5222 8212 5.532406 AGCACTAGTCTGATGAGAAGAGATC 59.468 44.000 0.00 0.00 0.00 2.75
5223 8213 5.448654 AGCACTAGTCTGATGAGAAGAGAT 58.551 41.667 0.00 0.00 0.00 2.75
5224 8214 4.854173 AGCACTAGTCTGATGAGAAGAGA 58.146 43.478 0.00 0.00 0.00 3.10
5225 8215 6.054941 TCTAGCACTAGTCTGATGAGAAGAG 58.945 44.000 4.67 0.00 34.84 2.85
5226 8216 5.995446 TCTAGCACTAGTCTGATGAGAAGA 58.005 41.667 4.67 0.00 34.84 2.87
5227 8217 6.347644 CGATCTAGCACTAGTCTGATGAGAAG 60.348 46.154 4.67 0.00 34.84 2.85
5228 8218 5.468409 CGATCTAGCACTAGTCTGATGAGAA 59.532 44.000 4.67 0.00 34.84 2.87
5229 8219 4.994217 CGATCTAGCACTAGTCTGATGAGA 59.006 45.833 4.67 0.00 34.84 3.27
5230 8220 4.994217 TCGATCTAGCACTAGTCTGATGAG 59.006 45.833 4.67 0.00 34.84 2.90
5231 8221 4.962155 TCGATCTAGCACTAGTCTGATGA 58.038 43.478 4.67 0.00 34.84 2.92
5232 8222 5.468409 TCTTCGATCTAGCACTAGTCTGATG 59.532 44.000 4.67 4.36 34.84 3.07
5233 8223 5.468746 GTCTTCGATCTAGCACTAGTCTGAT 59.531 44.000 4.67 0.00 34.84 2.90
5234 8224 4.812091 GTCTTCGATCTAGCACTAGTCTGA 59.188 45.833 4.67 0.00 34.84 3.27
5235 8225 4.814234 AGTCTTCGATCTAGCACTAGTCTG 59.186 45.833 4.67 0.00 34.84 3.51
5236 8226 5.031066 AGTCTTCGATCTAGCACTAGTCT 57.969 43.478 4.67 0.00 34.84 3.24
5237 8227 5.987347 ACTAGTCTTCGATCTAGCACTAGTC 59.013 44.000 18.31 2.01 41.66 2.59
5238 8228 5.756347 CACTAGTCTTCGATCTAGCACTAGT 59.244 44.000 18.31 18.31 44.69 2.57
5239 8229 5.333798 GCACTAGTCTTCGATCTAGCACTAG 60.334 48.000 15.11 14.64 39.41 2.57
5240 8230 4.512198 GCACTAGTCTTCGATCTAGCACTA 59.488 45.833 15.11 7.01 37.67 2.74
5241 8231 3.314080 GCACTAGTCTTCGATCTAGCACT 59.686 47.826 15.11 6.42 37.67 4.40
5242 8232 3.314080 AGCACTAGTCTTCGATCTAGCAC 59.686 47.826 15.11 10.02 37.67 4.40
5243 8233 3.546724 AGCACTAGTCTTCGATCTAGCA 58.453 45.455 15.11 0.00 37.67 3.49
5244 8234 4.992319 TCTAGCACTAGTCTTCGATCTAGC 59.008 45.833 15.11 7.40 37.67 3.42
5245 8235 5.407387 GGTCTAGCACTAGTCTTCGATCTAG 59.593 48.000 14.17 14.17 39.37 2.43
5246 8236 5.163332 TGGTCTAGCACTAGTCTTCGATCTA 60.163 44.000 4.67 0.00 34.84 1.98
5247 8237 4.131596 GGTCTAGCACTAGTCTTCGATCT 58.868 47.826 4.67 0.00 34.84 2.75
5248 8238 3.878103 TGGTCTAGCACTAGTCTTCGATC 59.122 47.826 4.67 0.00 34.84 3.69
5249 8239 3.887352 TGGTCTAGCACTAGTCTTCGAT 58.113 45.455 4.67 0.00 34.84 3.59
5250 8240 3.345508 TGGTCTAGCACTAGTCTTCGA 57.654 47.619 4.67 0.00 34.84 3.71
5251 8241 4.602995 GAATGGTCTAGCACTAGTCTTCG 58.397 47.826 4.67 0.00 34.84 3.79
5252 8242 4.335874 TCGAATGGTCTAGCACTAGTCTTC 59.664 45.833 4.67 0.81 34.84 2.87
5253 8243 4.270834 TCGAATGGTCTAGCACTAGTCTT 58.729 43.478 4.67 0.00 34.84 3.01
5254 8244 3.887352 TCGAATGGTCTAGCACTAGTCT 58.113 45.455 4.67 0.00 34.84 3.24
5255 8245 4.611807 CGATCGAATGGTCTAGCACTAGTC 60.612 50.000 10.26 0.00 34.84 2.59
5256 8246 3.251245 CGATCGAATGGTCTAGCACTAGT 59.749 47.826 10.26 0.00 34.84 2.57
5257 8247 3.498777 TCGATCGAATGGTCTAGCACTAG 59.501 47.826 16.99 0.00 34.56 2.57
5258 8248 3.473625 TCGATCGAATGGTCTAGCACTA 58.526 45.455 16.99 0.00 0.00 2.74
5259 8249 2.298610 TCGATCGAATGGTCTAGCACT 58.701 47.619 16.99 0.00 0.00 4.40
5260 8250 2.776312 TCGATCGAATGGTCTAGCAC 57.224 50.000 16.99 0.00 0.00 4.40
5261 8251 4.322080 AATTCGATCGAATGGTCTAGCA 57.678 40.909 36.54 12.25 43.26 3.49
5262 8252 5.118817 GGTAAATTCGATCGAATGGTCTAGC 59.881 44.000 36.54 27.87 43.26 3.42
5263 8253 5.634020 GGGTAAATTCGATCGAATGGTCTAG 59.366 44.000 36.54 0.00 43.26 2.43
5264 8254 5.510179 GGGGTAAATTCGATCGAATGGTCTA 60.510 44.000 36.54 23.71 43.26 2.59
5265 8255 4.377897 GGGTAAATTCGATCGAATGGTCT 58.622 43.478 36.54 24.55 43.26 3.85
5266 8256 3.497262 GGGGTAAATTCGATCGAATGGTC 59.503 47.826 36.54 27.45 43.26 4.02
5267 8257 3.473625 GGGGTAAATTCGATCGAATGGT 58.526 45.455 36.54 29.14 43.26 3.55
5268 8258 2.812011 GGGGGTAAATTCGATCGAATGG 59.188 50.000 36.54 0.88 43.26 3.16
5269 8259 3.472652 TGGGGGTAAATTCGATCGAATG 58.527 45.455 36.54 1.28 43.26 2.67
5270 8260 3.849563 TGGGGGTAAATTCGATCGAAT 57.150 42.857 32.29 32.29 45.67 3.34
5271 8261 3.272581 GTTGGGGGTAAATTCGATCGAA 58.727 45.455 30.83 30.83 38.59 3.71
5272 8262 2.739287 CGTTGGGGGTAAATTCGATCGA 60.739 50.000 15.15 15.15 0.00 3.59
5273 8263 1.595794 CGTTGGGGGTAAATTCGATCG 59.404 52.381 9.36 9.36 0.00 3.69
5274 8264 2.610833 GACGTTGGGGGTAAATTCGATC 59.389 50.000 0.00 0.00 0.00 3.69
5275 8265 2.635714 GACGTTGGGGGTAAATTCGAT 58.364 47.619 0.00 0.00 0.00 3.59
5276 8266 1.338960 GGACGTTGGGGGTAAATTCGA 60.339 52.381 0.00 0.00 0.00 3.71
5277 8267 1.089112 GGACGTTGGGGGTAAATTCG 58.911 55.000 0.00 0.00 0.00 3.34
5278 8268 1.089112 CGGACGTTGGGGGTAAATTC 58.911 55.000 0.00 0.00 0.00 2.17
5279 8269 0.691904 TCGGACGTTGGGGGTAAATT 59.308 50.000 0.00 0.00 0.00 1.82
5280 8270 0.913924 ATCGGACGTTGGGGGTAAAT 59.086 50.000 0.00 0.00 0.00 1.40
5281 8271 0.249955 GATCGGACGTTGGGGGTAAA 59.750 55.000 0.00 0.00 0.00 2.01
5282 8272 0.615544 AGATCGGACGTTGGGGGTAA 60.616 55.000 0.00 0.00 0.00 2.85
5283 8273 1.000739 AGATCGGACGTTGGGGGTA 59.999 57.895 0.00 0.00 0.00 3.69
5284 8274 2.284405 AGATCGGACGTTGGGGGT 60.284 61.111 0.00 0.00 0.00 4.95
5285 8275 2.180159 AACAGATCGGACGTTGGGGG 62.180 60.000 0.00 0.00 0.00 5.40
5286 8276 0.533491 TAACAGATCGGACGTTGGGG 59.467 55.000 0.00 0.00 0.00 4.96
5287 8277 1.470979 CCTAACAGATCGGACGTTGGG 60.471 57.143 0.00 4.35 35.35 4.12
5288 8278 1.475280 TCCTAACAGATCGGACGTTGG 59.525 52.381 0.00 0.00 0.00 3.77
5289 8279 2.933495 TCCTAACAGATCGGACGTTG 57.067 50.000 0.00 0.00 0.00 4.10
5290 8280 3.582780 GTTTCCTAACAGATCGGACGTT 58.417 45.455 0.00 0.00 34.31 3.99
5291 8281 2.094338 GGTTTCCTAACAGATCGGACGT 60.094 50.000 0.00 0.00 35.92 4.34
5292 8282 2.537401 GGTTTCCTAACAGATCGGACG 58.463 52.381 0.00 0.00 35.92 4.79
5293 8283 2.419713 GGGGTTTCCTAACAGATCGGAC 60.420 54.545 0.00 0.00 35.92 4.79
5294 8284 1.835531 GGGGTTTCCTAACAGATCGGA 59.164 52.381 0.00 0.00 35.92 4.55
5295 8285 1.472728 CGGGGTTTCCTAACAGATCGG 60.473 57.143 0.00 0.00 35.92 4.18
5296 8286 1.935933 CGGGGTTTCCTAACAGATCG 58.064 55.000 0.00 0.00 35.92 3.69
5297 8287 1.664873 GCGGGGTTTCCTAACAGATC 58.335 55.000 0.00 0.00 35.92 2.75
5298 8288 0.255033 GGCGGGGTTTCCTAACAGAT 59.745 55.000 0.00 0.00 35.92 2.90
5299 8289 1.681076 GGCGGGGTTTCCTAACAGA 59.319 57.895 0.00 0.00 35.92 3.41
5300 8290 1.743995 CGGCGGGGTTTCCTAACAG 60.744 63.158 0.00 0.00 35.92 3.16
5301 8291 2.348243 CGGCGGGGTTTCCTAACA 59.652 61.111 0.00 0.00 35.92 2.41
5302 8292 3.129502 GCGGCGGGGTTTCCTAAC 61.130 66.667 9.78 0.00 0.00 2.34
5303 8293 2.974041 ATGCGGCGGGGTTTCCTAA 61.974 57.895 9.78 0.00 0.00 2.69
5304 8294 3.404438 ATGCGGCGGGGTTTCCTA 61.404 61.111 9.78 0.00 0.00 2.94
5307 8297 1.944234 AAATCATGCGGCGGGGTTTC 61.944 55.000 9.78 0.00 0.00 2.78
5308 8298 1.981853 AAATCATGCGGCGGGGTTT 60.982 52.632 9.78 0.00 0.00 3.27
5309 8299 2.362375 AAATCATGCGGCGGGGTT 60.362 55.556 9.78 0.00 0.00 4.11
5310 8300 3.140141 CAAATCATGCGGCGGGGT 61.140 61.111 9.78 0.00 0.00 4.95
5311 8301 4.573950 GCAAATCATGCGGCGGGG 62.574 66.667 9.78 0.00 46.87 5.73
5319 8309 3.132289 AGGCTTCAATCCAGCAAATCATG 59.868 43.478 0.00 0.00 39.21 3.07
5320 8310 3.371965 AGGCTTCAATCCAGCAAATCAT 58.628 40.909 0.00 0.00 39.21 2.45
5321 8311 2.811410 AGGCTTCAATCCAGCAAATCA 58.189 42.857 0.00 0.00 39.21 2.57
5322 8312 3.881937 AAGGCTTCAATCCAGCAAATC 57.118 42.857 0.00 0.00 39.21 2.17
5323 8313 5.945144 ATTAAGGCTTCAATCCAGCAAAT 57.055 34.783 1.30 0.00 39.21 2.32
5324 8314 5.481105 CAATTAAGGCTTCAATCCAGCAAA 58.519 37.500 1.30 0.00 39.21 3.68
5325 8315 4.081531 CCAATTAAGGCTTCAATCCAGCAA 60.082 41.667 1.30 0.00 39.21 3.91
5326 8316 3.448301 CCAATTAAGGCTTCAATCCAGCA 59.552 43.478 1.30 0.00 39.21 4.41
5327 8317 4.050852 CCAATTAAGGCTTCAATCCAGC 57.949 45.455 1.30 0.00 36.45 4.85
5339 8329 2.083774 TGACGAAGCAGCCAATTAAGG 58.916 47.619 0.00 0.00 0.00 2.69
5340 8330 5.065218 AGTTATGACGAAGCAGCCAATTAAG 59.935 40.000 0.00 0.00 0.00 1.85
5341 8331 4.941263 AGTTATGACGAAGCAGCCAATTAA 59.059 37.500 0.00 0.00 0.00 1.40
5342 8332 4.332543 CAGTTATGACGAAGCAGCCAATTA 59.667 41.667 0.00 0.00 0.00 1.40
5343 8333 3.127548 CAGTTATGACGAAGCAGCCAATT 59.872 43.478 0.00 0.00 0.00 2.32
5344 8334 2.679837 CAGTTATGACGAAGCAGCCAAT 59.320 45.455 0.00 0.00 0.00 3.16
5345 8335 2.076100 CAGTTATGACGAAGCAGCCAA 58.924 47.619 0.00 0.00 0.00 4.52
5346 8336 1.725641 CAGTTATGACGAAGCAGCCA 58.274 50.000 0.00 0.00 0.00 4.75
5347 8337 0.375106 GCAGTTATGACGAAGCAGCC 59.625 55.000 0.00 0.00 0.00 4.85
5348 8338 1.363744 AGCAGTTATGACGAAGCAGC 58.636 50.000 0.00 0.00 0.00 5.25
5349 8339 3.549471 CACTAGCAGTTATGACGAAGCAG 59.451 47.826 0.00 4.28 0.00 4.24
5350 8340 3.056821 ACACTAGCAGTTATGACGAAGCA 60.057 43.478 0.00 0.00 0.00 3.91
5351 8341 3.304559 CACACTAGCAGTTATGACGAAGC 59.695 47.826 0.00 0.00 0.00 3.86
5352 8342 3.304559 GCACACTAGCAGTTATGACGAAG 59.695 47.826 0.00 0.00 0.00 3.79
5353 8343 3.250744 GCACACTAGCAGTTATGACGAA 58.749 45.455 0.00 0.00 0.00 3.85
5354 8344 2.230266 TGCACACTAGCAGTTATGACGA 59.770 45.455 0.00 0.00 40.11 4.20
5355 8345 2.606108 TGCACACTAGCAGTTATGACG 58.394 47.619 0.00 0.00 40.11 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.