Multiple sequence alignment - TraesCS6B01G215600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G215600 chr6B 100.000 2414 0 0 1 2414 293899094 293901507 0.000000e+00 4458.0
1 TraesCS6B01G215600 chr6B 82.759 145 23 2 8 151 385357066 385357209 7.010000e-26 128.0
2 TraesCS6B01G215600 chr6D 94.267 1221 66 3 989 2208 178883031 178881814 0.000000e+00 1864.0
3 TraesCS6B01G215600 chr6D 92.714 549 35 5 3 548 178886241 178885695 0.000000e+00 787.0
4 TraesCS6B01G215600 chr6D 85.895 475 41 5 542 991 178884800 178884327 1.300000e-132 483.0
5 TraesCS6B01G215600 chr6D 81.879 149 19 7 1 144 193319226 193319371 4.220000e-23 119.0
6 TraesCS6B01G215600 chr6D 95.556 45 2 0 2214 2258 139666986 139667030 3.330000e-09 73.1
7 TraesCS6B01G215600 chr3A 87.897 661 69 8 963 1615 47592185 47592842 0.000000e+00 767.0
8 TraesCS6B01G215600 chr3A 86.957 667 84 3 963 1629 693971984 693971321 0.000000e+00 747.0
9 TraesCS6B01G215600 chr7A 87.183 671 74 9 950 1613 78831526 78832191 0.000000e+00 752.0
10 TraesCS6B01G215600 chr7A 87.087 666 80 6 954 1615 303105206 303104543 0.000000e+00 749.0
11 TraesCS6B01G215600 chr7D 86.838 661 84 3 963 1622 271509517 271508859 0.000000e+00 736.0
12 TraesCS6B01G215600 chr7D 86.822 645 77 8 984 1627 593999419 594000056 0.000000e+00 713.0
13 TraesCS6B01G215600 chr7D 87.075 147 18 1 1693 1839 422949860 422950005 5.340000e-37 165.0
14 TraesCS6B01G215600 chr7D 91.892 74 5 1 1626 1698 280593527 280593600 4.250000e-18 102.0
15 TraesCS6B01G215600 chr4A 86.930 658 76 7 963 1613 697889345 697889999 0.000000e+00 730.0
16 TraesCS6B01G215600 chr4A 93.056 72 5 0 1625 1696 259758479 259758408 3.280000e-19 106.0
17 TraesCS6B01G215600 chr4A 92.958 71 5 0 1626 1696 229508857 229508787 1.180000e-18 104.0
18 TraesCS6B01G215600 chr4D 86.798 659 73 9 963 1613 372631132 372630480 0.000000e+00 723.0
19 TraesCS6B01G215600 chr4D 85.714 154 22 0 1693 1846 477044091 477044244 1.920000e-36 163.0
20 TraesCS6B01G215600 chr4D 83.784 148 22 2 5 151 51773178 51773324 3.240000e-29 139.0
21 TraesCS6B01G215600 chr4D 82.468 154 26 1 1697 1849 172013963 172013810 1.510000e-27 134.0
22 TraesCS6B01G215600 chr6A 91.743 436 34 2 1774 2208 232335502 232335068 2.650000e-169 604.0
23 TraesCS6B01G215600 chr5B 86.624 157 21 0 1693 1849 577301019 577301175 8.870000e-40 174.0
24 TraesCS6B01G215600 chr2D 85.350 157 20 2 1693 1849 392627102 392626949 2.480000e-35 159.0
25 TraesCS6B01G215600 chr2D 97.674 43 1 0 2209 2251 649180622 649180580 9.260000e-10 75.0
26 TraesCS6B01G215600 chr1D 85.000 160 17 7 1693 1849 57890087 57889932 3.210000e-34 156.0
27 TraesCS6B01G215600 chr7B 84.722 144 17 5 184 325 458843590 458843730 3.240000e-29 139.0
28 TraesCS6B01G215600 chr7B 90.123 81 7 1 1626 1705 304977508 304977588 1.180000e-18 104.0
29 TraesCS6B01G215600 chr7B 80.952 126 12 10 851 967 267365045 267365167 3.310000e-14 89.8
30 TraesCS6B01G215600 chr7B 95.455 44 0 2 2209 2252 492730959 492730918 4.310000e-08 69.4
31 TraesCS6B01G215600 chr2B 84.138 145 21 2 8 151 21815992 21815849 3.240000e-29 139.0
32 TraesCS6B01G215600 chr2B 82.166 157 23 3 1693 1846 391525968 391526122 1.950000e-26 130.0
33 TraesCS6B01G215600 chr2B 91.111 45 4 0 2211 2255 40476331 40476287 7.210000e-06 62.1
34 TraesCS6B01G215600 chr2B 93.023 43 1 2 2209 2250 94920339 94920380 7.210000e-06 62.1
35 TraesCS6B01G215600 chr2B 93.023 43 1 2 2209 2250 777123956 777123915 7.210000e-06 62.1
36 TraesCS6B01G215600 chr3D 83.221 149 23 2 4 151 243231415 243231268 4.190000e-28 135.0
37 TraesCS6B01G215600 chr3D 93.056 72 4 1 1626 1696 153513416 153513345 1.180000e-18 104.0
38 TraesCS6B01G215600 chr3B 82.069 145 26 0 7 151 339328302 339328158 9.060000e-25 124.0
39 TraesCS6B01G215600 chr3B 90.588 85 5 3 1612 1695 677569364 677569282 2.540000e-20 110.0
40 TraesCS6B01G215600 chr1B 81.757 148 27 0 4 151 239489781 239489634 9.060000e-25 124.0
41 TraesCS6B01G215600 chr1B 81.013 158 29 1 1693 1849 469077287 469077130 9.060000e-25 124.0
42 TraesCS6B01G215600 chr5D 82.192 146 22 3 8 151 73621549 73621406 3.260000e-24 122.0
43 TraesCS6B01G215600 chr4B 93.056 72 4 1 1626 1696 295685080 295685151 1.180000e-18 104.0
44 TraesCS6B01G215600 chr4B 92.958 71 5 0 1626 1696 323795026 323794956 1.180000e-18 104.0
45 TraesCS6B01G215600 chr5A 100.000 34 0 0 2211 2244 472992941 472992908 2.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G215600 chr6B 293899094 293901507 2413 False 4458.000000 4458 100.000000 1 2414 1 chr6B.!!$F1 2413
1 TraesCS6B01G215600 chr6D 178881814 178886241 4427 True 1044.666667 1864 90.958667 3 2208 3 chr6D.!!$R1 2205
2 TraesCS6B01G215600 chr3A 47592185 47592842 657 False 767.000000 767 87.897000 963 1615 1 chr3A.!!$F1 652
3 TraesCS6B01G215600 chr3A 693971321 693971984 663 True 747.000000 747 86.957000 963 1629 1 chr3A.!!$R1 666
4 TraesCS6B01G215600 chr7A 78831526 78832191 665 False 752.000000 752 87.183000 950 1613 1 chr7A.!!$F1 663
5 TraesCS6B01G215600 chr7A 303104543 303105206 663 True 749.000000 749 87.087000 954 1615 1 chr7A.!!$R1 661
6 TraesCS6B01G215600 chr7D 271508859 271509517 658 True 736.000000 736 86.838000 963 1622 1 chr7D.!!$R1 659
7 TraesCS6B01G215600 chr7D 593999419 594000056 637 False 713.000000 713 86.822000 984 1627 1 chr7D.!!$F3 643
8 TraesCS6B01G215600 chr4A 697889345 697889999 654 False 730.000000 730 86.930000 963 1613 1 chr4A.!!$F1 650
9 TraesCS6B01G215600 chr4D 372630480 372631132 652 True 723.000000 723 86.798000 963 1613 1 chr4D.!!$R2 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 401 0.032515 TCGAGGGGCTCTCACCATAA 60.033 55.0 15.97 0.0 42.55 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 4593 0.032217 CTCTCCCCTCCTTCTCTGCT 60.032 60.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.292591 AGTGAAAAGTGGTATATAGCCCATAGT 59.707 37.037 9.38 0.00 32.32 2.12
64 65 3.184581 GTCGTGTGAGAGCCAAGTAAAAG 59.815 47.826 0.00 0.00 0.00 2.27
70 71 5.827797 TGTGAGAGCCAAGTAAAAGAAATGT 59.172 36.000 0.00 0.00 0.00 2.71
99 100 1.002468 CTTGTGCGAGGGAAACAGTTG 60.002 52.381 0.00 0.00 0.00 3.16
144 145 6.127535 CCCAAATCATTGTTGCTATCAAGAGT 60.128 38.462 0.00 0.00 34.60 3.24
147 148 6.690194 ATCATTGTTGCTATCAAGAGTTCC 57.310 37.500 0.00 0.00 31.93 3.62
195 196 8.982723 AGATCTTATGTACCATAGACTTGTTGT 58.017 33.333 0.00 0.00 0.00 3.32
210 211 8.367660 AGACTTGTTGTTCCTATCTAAGATCA 57.632 34.615 0.00 0.00 0.00 2.92
232 233 5.534278 TCATGGACTAGATCTTGTGCTCTAG 59.466 44.000 24.28 13.88 44.27 2.43
235 236 4.890581 GGACTAGATCTTGTGCTCTAGGAA 59.109 45.833 18.79 0.00 43.42 3.36
236 237 5.361285 GGACTAGATCTTGTGCTCTAGGAAA 59.639 44.000 18.79 0.00 43.42 3.13
237 238 6.215495 ACTAGATCTTGTGCTCTAGGAAAC 57.785 41.667 9.11 0.00 43.42 2.78
254 255 4.829492 AGGAAACTTTGGATTGAACTCCTG 59.171 41.667 0.00 0.00 37.44 3.86
301 302 3.242903 CCCATAGAGCGATATCTAGTGCG 60.243 52.174 0.34 0.00 35.32 5.34
303 304 4.274705 CCATAGAGCGATATCTAGTGCGAT 59.725 45.833 0.34 0.00 35.32 4.58
306 307 4.254492 AGAGCGATATCTAGTGCGATACA 58.746 43.478 0.34 0.00 0.00 2.29
333 334 2.755952 AGTTCCTTCAAAACCAGGCT 57.244 45.000 0.00 0.00 0.00 4.58
337 338 1.133915 TCCTTCAAAACCAGGCTCGTT 60.134 47.619 0.00 0.00 0.00 3.85
391 393 0.543749 CTCCAAAATCGAGGGGCTCT 59.456 55.000 0.00 0.00 0.00 4.09
399 401 0.032515 TCGAGGGGCTCTCACCATAA 60.033 55.000 15.97 0.00 42.55 1.90
440 443 6.417635 AGAACATTGTGTTTTATTGCTTGTCG 59.582 34.615 0.00 0.00 41.28 4.35
447 450 6.752351 TGTGTTTTATTGCTTGTCGCTAAAAA 59.248 30.769 0.00 0.00 40.11 1.94
514 518 3.537206 AACGTGTCCCTCTGCCTGC 62.537 63.158 0.00 0.00 0.00 4.85
552 1457 7.290110 AGAGGCCCAAATAATAACTTAATGC 57.710 36.000 0.00 0.00 0.00 3.56
554 1459 7.510343 AGAGGCCCAAATAATAACTTAATGCAT 59.490 33.333 0.00 0.00 0.00 3.96
564 1469 0.599558 CTTAATGCATGGATGGCCCG 59.400 55.000 0.00 0.00 37.93 6.13
566 1471 0.405198 TAATGCATGGATGGCCCGAT 59.595 50.000 0.00 0.00 37.93 4.18
573 1478 2.254464 GGATGGCCCGATCGAAAGC 61.254 63.158 18.66 15.86 0.00 3.51
593 1498 2.034812 GCGGTAGAGGTTCAGGATACAG 59.965 54.545 0.00 0.00 41.41 2.74
602 1507 4.113354 GGTTCAGGATACAGATGTTCGTC 58.887 47.826 0.00 0.00 41.41 4.20
605 1510 3.064958 TCAGGATACAGATGTTCGTCGAC 59.935 47.826 5.18 5.18 41.41 4.20
606 1511 3.065510 CAGGATACAGATGTTCGTCGACT 59.934 47.826 14.70 0.00 41.41 4.18
617 1522 2.372690 CGTCGACTGGAAGCGTTGG 61.373 63.158 14.70 0.00 37.60 3.77
664 1569 1.000052 GCGATGCCCTAGAAGTCCTAC 60.000 57.143 0.00 0.00 0.00 3.18
666 1571 2.679082 GATGCCCTAGAAGTCCTACCA 58.321 52.381 0.00 0.00 0.00 3.25
697 1627 2.220313 GCTCTGATCATCTTCTTGCCC 58.780 52.381 0.00 0.00 0.00 5.36
707 1637 1.151668 CTTCTTGCCCTGAAGACACG 58.848 55.000 4.97 0.00 42.37 4.49
717 1647 1.821753 CTGAAGACACGACAGGGAGAT 59.178 52.381 0.00 0.00 0.00 2.75
719 1649 0.898320 AAGACACGACAGGGAGATGG 59.102 55.000 0.00 0.00 0.00 3.51
720 1650 0.039764 AGACACGACAGGGAGATGGA 59.960 55.000 0.00 0.00 0.00 3.41
724 1654 0.541998 ACGACAGGGAGATGGACACA 60.542 55.000 0.00 0.00 0.00 3.72
731 1661 1.671742 GAGATGGACACACCCACGT 59.328 57.895 0.00 0.00 39.34 4.49
740 1670 0.461163 CACACCCACGTCTGTTGTCA 60.461 55.000 0.00 0.00 0.00 3.58
778 1708 3.321682 CCTTTGCTTCAATCAGGGTTCAA 59.678 43.478 0.00 0.00 0.00 2.69
789 1719 4.656100 TCAGGGTTCAATCATTCAGGAA 57.344 40.909 0.00 0.00 0.00 3.36
806 1736 2.045885 AGGAAGAGAAGACACCCCCATA 59.954 50.000 0.00 0.00 0.00 2.74
822 1752 2.170607 CCCATACCCAGACTACCAACTG 59.829 54.545 0.00 0.00 0.00 3.16
855 1785 3.222603 TCAAGAGCAAGGTTCCTTTTCC 58.777 45.455 0.86 0.00 0.00 3.13
907 1837 6.893958 AAGTCATCTAGTCGTTGCTATTTG 57.106 37.500 0.00 0.00 0.00 2.32
910 1840 7.268586 AGTCATCTAGTCGTTGCTATTTGAAT 58.731 34.615 0.00 0.00 0.00 2.57
977 1907 8.758829 TGTTCTTAAATCTTCAGATAGGCTACA 58.241 33.333 0.00 0.00 33.73 2.74
1062 3292 4.291783 GAGAACATACAGATACTGACGGC 58.708 47.826 5.76 0.00 35.18 5.68
1067 3297 1.330655 ACAGATACTGACGGCCCTGG 61.331 60.000 0.00 0.00 35.18 4.45
1086 3317 4.858692 CCTGGATTGTTTTGCGAACTAATG 59.141 41.667 4.67 0.00 0.00 1.90
1089 3320 6.276847 TGGATTGTTTTGCGAACTAATGTTT 58.723 32.000 4.67 0.00 36.39 2.83
1172 3403 4.561530 GCGCTCCACAATCTATCCTAATGA 60.562 45.833 0.00 0.00 0.00 2.57
1218 3450 0.518636 CCATTCCTGTGACTGTTGCG 59.481 55.000 0.00 0.00 0.00 4.85
1309 3541 0.099436 GCTCAATGGATTGGCGACAC 59.901 55.000 0.00 0.00 42.67 3.67
1622 3863 2.233431 CCCGAATTTCTGAAAATGGCCA 59.767 45.455 8.56 8.56 35.27 5.36
1685 3926 0.823356 TTGCTCCTCCACAACCTTGC 60.823 55.000 0.00 0.00 0.00 4.01
1705 3946 2.393764 CGTTGCTTCATTTGTCCAACC 58.606 47.619 0.00 0.00 33.97 3.77
1707 3948 0.313672 TGCTTCATTTGTCCAACCGC 59.686 50.000 0.00 0.00 0.00 5.68
1737 3978 3.334583 CCATATCATGGGGTTACCTCG 57.665 52.381 0.00 0.00 46.86 4.63
1781 4022 9.941325 TTCATACAAAAGCATTGGTCATTTAAT 57.059 25.926 7.12 0.00 0.00 1.40
1823 4064 0.618458 AGGATTGGCTTTCCGCTACA 59.382 50.000 1.45 0.00 38.36 2.74
1855 4096 0.106708 TCTGACACTGGTGGTTGCTC 59.893 55.000 5.70 0.00 34.19 4.26
1886 4127 4.562757 GGTGATGGTAGCGCTATGGAAATA 60.563 45.833 21.96 1.66 0.00 1.40
1892 4133 3.728076 AGCGCTATGGAAATAAGACGA 57.272 42.857 8.99 0.00 0.00 4.20
1903 4144 4.941873 GGAAATAAGACGAGAAATGGTGGT 59.058 41.667 0.00 0.00 0.00 4.16
1936 4177 4.166187 GAAGATGGCTTCTTTGGTGTTC 57.834 45.455 15.80 0.00 44.88 3.18
1937 4178 3.515602 AGATGGCTTCTTTGGTGTTCT 57.484 42.857 0.00 0.00 0.00 3.01
1938 4179 3.152341 AGATGGCTTCTTTGGTGTTCTG 58.848 45.455 0.00 0.00 0.00 3.02
1939 4180 1.691196 TGGCTTCTTTGGTGTTCTGG 58.309 50.000 0.00 0.00 0.00 3.86
1940 4181 1.214175 TGGCTTCTTTGGTGTTCTGGA 59.786 47.619 0.00 0.00 0.00 3.86
1941 4182 2.158475 TGGCTTCTTTGGTGTTCTGGAT 60.158 45.455 0.00 0.00 0.00 3.41
2010 4251 9.527157 TTTTATAAATGTTGGAGAGTTGGATCA 57.473 29.630 0.00 0.00 0.00 2.92
2069 4310 0.528466 CACGTGCGCTCATACCAGAT 60.528 55.000 9.73 0.00 0.00 2.90
2070 4311 0.528466 ACGTGCGCTCATACCAGATG 60.528 55.000 9.73 0.00 0.00 2.90
2072 4313 1.656652 GTGCGCTCATACCAGATGTT 58.343 50.000 9.73 0.00 0.00 2.71
2080 4321 4.256110 CTCATACCAGATGTTGTCTTGCA 58.744 43.478 0.00 0.00 34.00 4.08
2085 4326 3.324846 ACCAGATGTTGTCTTGCACTCTA 59.675 43.478 0.00 0.00 34.00 2.43
2095 4336 5.865085 TGTCTTGCACTCTATTTACTTGGT 58.135 37.500 0.00 0.00 0.00 3.67
2098 4339 4.634012 TGCACTCTATTTACTTGGTGGT 57.366 40.909 0.00 0.00 0.00 4.16
2115 4356 0.332972 GGTGCCTCCAATTCCTTCCT 59.667 55.000 0.00 0.00 35.97 3.36
2118 4359 3.563479 GGTGCCTCCAATTCCTTCCTTTA 60.563 47.826 0.00 0.00 35.97 1.85
2119 4360 3.444034 GTGCCTCCAATTCCTTCCTTTAC 59.556 47.826 0.00 0.00 0.00 2.01
2149 4391 6.709018 TTTTCCTTGTTTCCTTCTAAGTGG 57.291 37.500 0.00 0.00 0.00 4.00
2160 4402 9.232473 GTTTCCTTCTAAGTGGTGATTTATCTT 57.768 33.333 0.00 0.00 0.00 2.40
2208 4450 8.821894 CGGAAACAATTTAAACAAAGGATTTCA 58.178 29.630 0.00 0.00 35.03 2.69
2213 4455 9.492973 ACAATTTAAACAAAGGATTTCATCTGG 57.507 29.630 0.00 0.00 35.03 3.86
2214 4456 9.492973 CAATTTAAACAAAGGATTTCATCTGGT 57.507 29.630 0.00 0.00 35.03 4.00
2220 4462 8.887036 AACAAAGGATTTCATCTGGTTTAAAC 57.113 30.769 9.98 9.98 35.03 2.01
2221 4463 8.017418 ACAAAGGATTTCATCTGGTTTAAACA 57.983 30.769 19.57 5.63 35.03 2.83
2222 4464 8.482128 ACAAAGGATTTCATCTGGTTTAAACAA 58.518 29.630 19.57 7.99 35.03 2.83
2223 4465 9.492973 CAAAGGATTTCATCTGGTTTAAACAAT 57.507 29.630 19.57 8.76 35.03 2.71
2224 4466 9.492973 AAAGGATTTCATCTGGTTTAAACAATG 57.507 29.630 19.57 17.37 27.08 2.82
2225 4467 7.614494 AGGATTTCATCTGGTTTAAACAATGG 58.386 34.615 19.57 6.69 0.00 3.16
2226 4468 7.235399 AGGATTTCATCTGGTTTAAACAATGGT 59.765 33.333 19.57 9.48 0.00 3.55
2227 4469 7.331687 GGATTTCATCTGGTTTAAACAATGGTG 59.668 37.037 19.57 13.96 0.00 4.17
2228 4470 6.723298 TTCATCTGGTTTAAACAATGGTGT 57.277 33.333 19.57 0.00 40.75 4.16
2229 4471 6.083098 TCATCTGGTTTAAACAATGGTGTG 57.917 37.500 19.57 8.72 38.27 3.82
2230 4472 5.830457 TCATCTGGTTTAAACAATGGTGTGA 59.170 36.000 19.57 10.58 38.27 3.58
2231 4473 6.493115 TCATCTGGTTTAAACAATGGTGTGAT 59.507 34.615 19.57 4.19 38.27 3.06
2232 4474 6.083098 TCTGGTTTAAACAATGGTGTGATG 57.917 37.500 19.57 0.00 38.27 3.07
2233 4475 5.830457 TCTGGTTTAAACAATGGTGTGATGA 59.170 36.000 19.57 0.00 38.27 2.92
2234 4476 6.016360 TCTGGTTTAAACAATGGTGTGATGAG 60.016 38.462 19.57 0.00 38.27 2.90
2235 4477 4.923281 GGTTTAAACAATGGTGTGATGAGC 59.077 41.667 19.57 0.00 38.27 4.26
2236 4478 2.995466 AAACAATGGTGTGATGAGCG 57.005 45.000 0.00 0.00 38.27 5.03
2237 4479 1.896220 AACAATGGTGTGATGAGCGT 58.104 45.000 0.00 0.00 38.27 5.07
2238 4480 2.760634 ACAATGGTGTGATGAGCGTA 57.239 45.000 0.00 0.00 36.31 4.42
2239 4481 3.052455 ACAATGGTGTGATGAGCGTAA 57.948 42.857 0.00 0.00 36.31 3.18
2240 4482 3.407698 ACAATGGTGTGATGAGCGTAAA 58.592 40.909 0.00 0.00 36.31 2.01
2241 4483 3.818210 ACAATGGTGTGATGAGCGTAAAA 59.182 39.130 0.00 0.00 36.31 1.52
2242 4484 4.277174 ACAATGGTGTGATGAGCGTAAAAA 59.723 37.500 0.00 0.00 36.31 1.94
2243 4485 5.048083 ACAATGGTGTGATGAGCGTAAAAAT 60.048 36.000 0.00 0.00 36.31 1.82
2244 4486 6.150307 ACAATGGTGTGATGAGCGTAAAAATA 59.850 34.615 0.00 0.00 36.31 1.40
2245 4487 6.942532 ATGGTGTGATGAGCGTAAAAATAT 57.057 33.333 0.00 0.00 0.00 1.28
2246 4488 6.358118 TGGTGTGATGAGCGTAAAAATATC 57.642 37.500 0.00 0.00 0.00 1.63
2247 4489 5.877564 TGGTGTGATGAGCGTAAAAATATCA 59.122 36.000 0.00 0.00 0.00 2.15
2248 4490 6.183360 TGGTGTGATGAGCGTAAAAATATCAC 60.183 38.462 0.00 0.00 42.72 3.06
2249 4491 6.037172 GGTGTGATGAGCGTAAAAATATCACT 59.963 38.462 14.03 0.00 42.80 3.41
2250 4492 7.119997 GTGTGATGAGCGTAAAAATATCACTC 58.880 38.462 14.03 8.46 42.80 3.51
2251 4493 6.816140 TGTGATGAGCGTAAAAATATCACTCA 59.184 34.615 14.03 0.00 42.80 3.41
2252 4494 7.119997 GTGATGAGCGTAAAAATATCACTCAC 58.880 38.462 0.00 0.00 40.53 3.51
2253 4495 6.257849 TGATGAGCGTAAAAATATCACTCACC 59.742 38.462 0.00 0.00 35.68 4.02
2254 4496 5.483811 TGAGCGTAAAAATATCACTCACCA 58.516 37.500 0.00 0.00 0.00 4.17
2255 4497 5.935206 TGAGCGTAAAAATATCACTCACCAA 59.065 36.000 0.00 0.00 0.00 3.67
2256 4498 6.597672 TGAGCGTAAAAATATCACTCACCAAT 59.402 34.615 0.00 0.00 0.00 3.16
2257 4499 7.766738 TGAGCGTAAAAATATCACTCACCAATA 59.233 33.333 0.00 0.00 0.00 1.90
2258 4500 8.677148 AGCGTAAAAATATCACTCACCAATAT 57.323 30.769 0.00 0.00 0.00 1.28
2259 4501 8.559536 AGCGTAAAAATATCACTCACCAATATG 58.440 33.333 0.00 0.00 0.00 1.78
2260 4502 8.556194 GCGTAAAAATATCACTCACCAATATGA 58.444 33.333 0.00 0.00 0.00 2.15
2268 4510 2.843701 CTCACCAATATGAGGAGCACC 58.156 52.381 0.00 0.00 42.13 5.01
2269 4511 2.171237 CTCACCAATATGAGGAGCACCA 59.829 50.000 2.07 0.00 42.13 4.17
2270 4512 2.092968 TCACCAATATGAGGAGCACCAC 60.093 50.000 2.07 0.00 38.94 4.16
2271 4513 1.915489 ACCAATATGAGGAGCACCACA 59.085 47.619 2.39 2.39 40.66 4.17
2272 4514 2.308570 ACCAATATGAGGAGCACCACAA 59.691 45.455 4.20 0.00 39.90 3.33
2273 4515 2.684881 CCAATATGAGGAGCACCACAAC 59.315 50.000 4.20 0.00 39.90 3.32
2274 4516 2.315925 ATATGAGGAGCACCACAACG 57.684 50.000 4.20 0.00 39.90 4.10
2275 4517 1.262417 TATGAGGAGCACCACAACGA 58.738 50.000 4.20 0.00 39.90 3.85
2276 4518 0.320771 ATGAGGAGCACCACAACGAC 60.321 55.000 4.20 0.00 39.90 4.34
2277 4519 1.668151 GAGGAGCACCACAACGACC 60.668 63.158 2.07 0.00 38.94 4.79
2278 4520 2.110213 GGAGCACCACAACGACCA 59.890 61.111 0.00 0.00 35.97 4.02
2279 4521 1.525077 GGAGCACCACAACGACCAA 60.525 57.895 0.00 0.00 35.97 3.67
2280 4522 0.889186 GGAGCACCACAACGACCAAT 60.889 55.000 0.00 0.00 35.97 3.16
2281 4523 0.517316 GAGCACCACAACGACCAATC 59.483 55.000 0.00 0.00 0.00 2.67
2282 4524 0.179032 AGCACCACAACGACCAATCA 60.179 50.000 0.00 0.00 0.00 2.57
2283 4525 0.881118 GCACCACAACGACCAATCAT 59.119 50.000 0.00 0.00 0.00 2.45
2284 4526 1.135689 GCACCACAACGACCAATCATC 60.136 52.381 0.00 0.00 0.00 2.92
2285 4527 1.468520 CACCACAACGACCAATCATCC 59.531 52.381 0.00 0.00 0.00 3.51
2286 4528 1.094785 CCACAACGACCAATCATCCC 58.905 55.000 0.00 0.00 0.00 3.85
2287 4529 1.340017 CCACAACGACCAATCATCCCT 60.340 52.381 0.00 0.00 0.00 4.20
2288 4530 2.093181 CCACAACGACCAATCATCCCTA 60.093 50.000 0.00 0.00 0.00 3.53
2289 4531 3.605634 CACAACGACCAATCATCCCTAA 58.394 45.455 0.00 0.00 0.00 2.69
2290 4532 3.374058 CACAACGACCAATCATCCCTAAC 59.626 47.826 0.00 0.00 0.00 2.34
2291 4533 3.008594 ACAACGACCAATCATCCCTAACA 59.991 43.478 0.00 0.00 0.00 2.41
2292 4534 3.261981 ACGACCAATCATCCCTAACAC 57.738 47.619 0.00 0.00 0.00 3.32
2293 4535 2.569853 ACGACCAATCATCCCTAACACA 59.430 45.455 0.00 0.00 0.00 3.72
2294 4536 3.199946 ACGACCAATCATCCCTAACACAT 59.800 43.478 0.00 0.00 0.00 3.21
2295 4537 3.809832 CGACCAATCATCCCTAACACATC 59.190 47.826 0.00 0.00 0.00 3.06
2296 4538 3.808728 ACCAATCATCCCTAACACATCG 58.191 45.455 0.00 0.00 0.00 3.84
2297 4539 3.141398 CCAATCATCCCTAACACATCGG 58.859 50.000 0.00 0.00 0.00 4.18
2298 4540 3.433598 CCAATCATCCCTAACACATCGGT 60.434 47.826 0.00 0.00 0.00 4.69
2299 4541 3.753294 ATCATCCCTAACACATCGGTC 57.247 47.619 0.00 0.00 0.00 4.79
2300 4542 2.747177 TCATCCCTAACACATCGGTCT 58.253 47.619 0.00 0.00 0.00 3.85
2301 4543 2.430694 TCATCCCTAACACATCGGTCTG 59.569 50.000 0.00 0.00 0.00 3.51
2302 4544 2.225382 TCCCTAACACATCGGTCTGA 57.775 50.000 0.00 0.00 0.00 3.27
2303 4545 2.531771 TCCCTAACACATCGGTCTGAA 58.468 47.619 0.00 0.00 0.00 3.02
2304 4546 3.104512 TCCCTAACACATCGGTCTGAAT 58.895 45.455 0.00 0.00 0.00 2.57
2305 4547 4.283337 TCCCTAACACATCGGTCTGAATA 58.717 43.478 0.00 0.00 0.00 1.75
2306 4548 4.712829 TCCCTAACACATCGGTCTGAATAA 59.287 41.667 0.00 0.00 0.00 1.40
2307 4549 4.809426 CCCTAACACATCGGTCTGAATAAC 59.191 45.833 0.00 0.00 0.00 1.89
2308 4550 5.395324 CCCTAACACATCGGTCTGAATAACT 60.395 44.000 0.00 0.00 0.00 2.24
2309 4551 6.106673 CCTAACACATCGGTCTGAATAACTT 58.893 40.000 0.00 0.00 0.00 2.66
2310 4552 5.862924 AACACATCGGTCTGAATAACTTG 57.137 39.130 0.00 0.00 0.00 3.16
2311 4553 4.253685 ACACATCGGTCTGAATAACTTGG 58.746 43.478 0.00 0.00 0.00 3.61
2312 4554 3.623060 CACATCGGTCTGAATAACTTGGG 59.377 47.826 0.00 0.00 0.00 4.12
2313 4555 3.517901 ACATCGGTCTGAATAACTTGGGA 59.482 43.478 0.00 0.00 0.00 4.37
2314 4556 4.019681 ACATCGGTCTGAATAACTTGGGAA 60.020 41.667 0.00 0.00 0.00 3.97
2315 4557 4.202245 TCGGTCTGAATAACTTGGGAAG 57.798 45.455 0.00 0.00 0.00 3.46
2316 4558 3.835978 TCGGTCTGAATAACTTGGGAAGA 59.164 43.478 0.00 0.00 0.00 2.87
2317 4559 4.285003 TCGGTCTGAATAACTTGGGAAGAA 59.715 41.667 0.00 0.00 0.00 2.52
2318 4560 5.001232 CGGTCTGAATAACTTGGGAAGAAA 58.999 41.667 0.00 0.00 0.00 2.52
2319 4561 5.106673 CGGTCTGAATAACTTGGGAAGAAAC 60.107 44.000 0.00 0.00 0.00 2.78
2320 4562 6.004574 GGTCTGAATAACTTGGGAAGAAACT 58.995 40.000 0.00 0.00 0.00 2.66
2321 4563 6.149640 GGTCTGAATAACTTGGGAAGAAACTC 59.850 42.308 0.00 0.00 0.00 3.01
2322 4564 5.932303 TCTGAATAACTTGGGAAGAAACTCG 59.068 40.000 0.00 0.00 0.00 4.18
2323 4565 5.617252 TGAATAACTTGGGAAGAAACTCGT 58.383 37.500 0.00 0.00 0.00 4.18
2324 4566 5.699458 TGAATAACTTGGGAAGAAACTCGTC 59.301 40.000 0.00 0.00 0.00 4.20
2325 4567 2.545537 ACTTGGGAAGAAACTCGTCC 57.454 50.000 0.48 0.48 43.09 4.79
2326 4568 1.766496 ACTTGGGAAGAAACTCGTCCA 59.234 47.619 10.22 0.00 45.17 4.02
2327 4569 2.143925 CTTGGGAAGAAACTCGTCCAC 58.856 52.381 10.22 1.92 45.17 4.02
2328 4570 0.395312 TGGGAAGAAACTCGTCCACC 59.605 55.000 10.22 0.00 45.17 4.61
2329 4571 0.395312 GGGAAGAAACTCGTCCACCA 59.605 55.000 10.22 0.00 45.17 4.17
2330 4572 1.509703 GGAAGAAACTCGTCCACCAC 58.490 55.000 4.04 0.00 43.27 4.16
2331 4573 1.070289 GGAAGAAACTCGTCCACCACT 59.930 52.381 4.04 0.00 43.27 4.00
2332 4574 2.484947 GGAAGAAACTCGTCCACCACTT 60.485 50.000 4.04 0.00 43.27 3.16
2333 4575 3.203716 GAAGAAACTCGTCCACCACTTT 58.796 45.455 0.00 0.00 0.00 2.66
2334 4576 3.277142 AGAAACTCGTCCACCACTTTT 57.723 42.857 0.00 0.00 0.00 2.27
2335 4577 3.203716 AGAAACTCGTCCACCACTTTTC 58.796 45.455 0.00 0.00 0.00 2.29
2336 4578 1.963172 AACTCGTCCACCACTTTTCC 58.037 50.000 0.00 0.00 0.00 3.13
2337 4579 1.129058 ACTCGTCCACCACTTTTCCT 58.871 50.000 0.00 0.00 0.00 3.36
2338 4580 1.070289 ACTCGTCCACCACTTTTCCTC 59.930 52.381 0.00 0.00 0.00 3.71
2339 4581 0.395312 TCGTCCACCACTTTTCCTCC 59.605 55.000 0.00 0.00 0.00 4.30
2340 4582 0.107831 CGTCCACCACTTTTCCTCCA 59.892 55.000 0.00 0.00 0.00 3.86
2341 4583 1.605753 GTCCACCACTTTTCCTCCAC 58.394 55.000 0.00 0.00 0.00 4.02
2342 4584 0.476771 TCCACCACTTTTCCTCCACC 59.523 55.000 0.00 0.00 0.00 4.61
2343 4585 0.184933 CCACCACTTTTCCTCCACCA 59.815 55.000 0.00 0.00 0.00 4.17
2344 4586 1.318576 CACCACTTTTCCTCCACCAC 58.681 55.000 0.00 0.00 0.00 4.16
2345 4587 0.185175 ACCACTTTTCCTCCACCACC 59.815 55.000 0.00 0.00 0.00 4.61
2346 4588 0.184933 CCACTTTTCCTCCACCACCA 59.815 55.000 0.00 0.00 0.00 4.17
2347 4589 1.318576 CACTTTTCCTCCACCACCAC 58.681 55.000 0.00 0.00 0.00 4.16
2348 4590 0.179029 ACTTTTCCTCCACCACCACG 60.179 55.000 0.00 0.00 0.00 4.94
2349 4591 0.889186 CTTTTCCTCCACCACCACGG 60.889 60.000 0.00 0.00 42.50 4.94
2350 4592 2.969300 TTTTCCTCCACCACCACGGC 62.969 60.000 0.00 0.00 39.03 5.68
2352 4594 4.704833 CCTCCACCACCACGGCAG 62.705 72.222 0.00 0.00 39.03 4.85
2356 4598 4.624364 CACCACCACGGCAGCAGA 62.624 66.667 0.00 0.00 39.03 4.26
2357 4599 4.320456 ACCACCACGGCAGCAGAG 62.320 66.667 0.00 0.00 39.03 3.35
2358 4600 4.007644 CCACCACGGCAGCAGAGA 62.008 66.667 0.00 0.00 0.00 3.10
2359 4601 2.031012 CACCACGGCAGCAGAGAA 59.969 61.111 0.00 0.00 0.00 2.87
2360 4602 2.031516 CACCACGGCAGCAGAGAAG 61.032 63.158 0.00 0.00 0.00 2.85
2361 4603 2.435586 CCACGGCAGCAGAGAAGG 60.436 66.667 0.00 0.00 0.00 3.46
2362 4604 2.659016 CACGGCAGCAGAGAAGGA 59.341 61.111 0.00 0.00 0.00 3.36
2363 4605 1.447489 CACGGCAGCAGAGAAGGAG 60.447 63.158 0.00 0.00 0.00 3.69
2364 4606 2.186384 CGGCAGCAGAGAAGGAGG 59.814 66.667 0.00 0.00 0.00 4.30
2365 4607 2.588989 GGCAGCAGAGAAGGAGGG 59.411 66.667 0.00 0.00 0.00 4.30
2366 4608 2.588989 GCAGCAGAGAAGGAGGGG 59.411 66.667 0.00 0.00 0.00 4.79
2367 4609 1.992277 GCAGCAGAGAAGGAGGGGA 60.992 63.158 0.00 0.00 0.00 4.81
2368 4610 1.970352 GCAGCAGAGAAGGAGGGGAG 61.970 65.000 0.00 0.00 0.00 4.30
2369 4611 0.325110 CAGCAGAGAAGGAGGGGAGA 60.325 60.000 0.00 0.00 0.00 3.71
2370 4612 0.032217 AGCAGAGAAGGAGGGGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
2371 4613 1.685355 GCAGAGAAGGAGGGGAGAGC 61.685 65.000 0.00 0.00 0.00 4.09
2372 4614 1.048160 CAGAGAAGGAGGGGAGAGCC 61.048 65.000 0.00 0.00 0.00 4.70
2382 4624 3.650950 GGAGAGCCCACAGCCCAA 61.651 66.667 0.00 0.00 45.47 4.12
2383 4625 2.436109 GAGAGCCCACAGCCCAAA 59.564 61.111 0.00 0.00 45.47 3.28
2384 4626 1.000396 GAGAGCCCACAGCCCAAAT 60.000 57.895 0.00 0.00 45.47 2.32
2385 4627 0.613012 GAGAGCCCACAGCCCAAATT 60.613 55.000 0.00 0.00 45.47 1.82
2386 4628 0.901580 AGAGCCCACAGCCCAAATTG 60.902 55.000 0.00 0.00 45.47 2.32
2387 4629 2.046988 GCCCACAGCCCAAATTGC 60.047 61.111 0.00 0.00 34.35 3.56
2388 4630 2.664398 CCCACAGCCCAAATTGCC 59.336 61.111 0.00 0.00 0.00 4.52
2389 4631 2.215625 CCCACAGCCCAAATTGCCA 61.216 57.895 0.00 0.00 0.00 4.92
2390 4632 1.555477 CCCACAGCCCAAATTGCCAT 61.555 55.000 0.00 0.00 0.00 4.40
2391 4633 0.391927 CCACAGCCCAAATTGCCATG 60.392 55.000 0.00 0.00 0.00 3.66
2392 4634 1.022451 CACAGCCCAAATTGCCATGC 61.022 55.000 0.00 0.00 0.00 4.06
2393 4635 1.450669 CAGCCCAAATTGCCATGCC 60.451 57.895 0.00 0.00 0.00 4.40
2394 4636 1.614226 AGCCCAAATTGCCATGCCT 60.614 52.632 0.00 0.00 0.00 4.75
2395 4637 1.153309 GCCCAAATTGCCATGCCTC 60.153 57.895 0.00 0.00 0.00 4.70
2396 4638 1.142314 CCCAAATTGCCATGCCTCG 59.858 57.895 0.00 0.00 0.00 4.63
2397 4639 1.321805 CCCAAATTGCCATGCCTCGA 61.322 55.000 0.00 0.00 0.00 4.04
2398 4640 0.748450 CCAAATTGCCATGCCTCGAT 59.252 50.000 0.00 0.00 0.00 3.59
2399 4641 1.955778 CCAAATTGCCATGCCTCGATA 59.044 47.619 0.00 0.00 0.00 2.92
2400 4642 2.559668 CCAAATTGCCATGCCTCGATAT 59.440 45.455 0.00 0.00 0.00 1.63
2401 4643 3.006110 CCAAATTGCCATGCCTCGATATT 59.994 43.478 0.00 0.00 0.00 1.28
2402 4644 4.218200 CCAAATTGCCATGCCTCGATATTA 59.782 41.667 0.00 0.00 0.00 0.98
2403 4645 5.105635 CCAAATTGCCATGCCTCGATATTAT 60.106 40.000 0.00 0.00 0.00 1.28
2404 4646 6.392354 CAAATTGCCATGCCTCGATATTATT 58.608 36.000 0.00 0.00 0.00 1.40
2405 4647 6.594788 AATTGCCATGCCTCGATATTATTT 57.405 33.333 0.00 0.00 0.00 1.40
2406 4648 5.375417 TTGCCATGCCTCGATATTATTTG 57.625 39.130 0.00 0.00 0.00 2.32
2407 4649 3.191162 TGCCATGCCTCGATATTATTTGC 59.809 43.478 0.00 0.00 0.00 3.68
2408 4650 3.728864 GCCATGCCTCGATATTATTTGCG 60.729 47.826 0.00 0.00 0.00 4.85
2409 4651 3.684305 CCATGCCTCGATATTATTTGCGA 59.316 43.478 0.00 0.00 0.00 5.10
2410 4652 4.154015 CCATGCCTCGATATTATTTGCGAA 59.846 41.667 0.00 0.00 31.89 4.70
2411 4653 4.990543 TGCCTCGATATTATTTGCGAAG 57.009 40.909 0.00 0.00 31.89 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.902613 TTCACTCTATGCCCATTTTCTTG 57.097 39.130 0.00 0.00 0.00 3.02
1 2 6.494835 ACTTTTCACTCTATGCCCATTTTCTT 59.505 34.615 0.00 0.00 0.00 2.52
9 10 3.073274 ACCACTTTTCACTCTATGCCC 57.927 47.619 0.00 0.00 0.00 5.36
43 44 3.069016 TCTTTTACTTGGCTCTCACACGA 59.931 43.478 0.00 0.00 0.00 4.35
64 65 2.412847 GCACAAGGACTACGCACATTTC 60.413 50.000 0.00 0.00 0.00 2.17
70 71 1.080772 CTCGCACAAGGACTACGCA 60.081 57.895 0.00 0.00 0.00 5.24
99 100 3.829026 GGGGCTCATTGGAATATTTCTCC 59.171 47.826 0.00 0.00 0.00 3.71
114 115 1.275856 GCAACAATGATTTGGGGCTCA 59.724 47.619 0.00 0.00 37.15 4.26
144 145 6.248433 AGCACAAGATCTAATCCAAAAGGAA 58.752 36.000 0.00 0.00 0.00 3.36
147 148 8.674263 ATCTAGCACAAGATCTAATCCAAAAG 57.326 34.615 0.00 0.00 30.09 2.27
195 196 9.693739 GATCTAGTCCATGATCTTAGATAGGAA 57.306 37.037 10.69 0.00 36.92 3.36
222 223 4.431416 TCCAAAGTTTCCTAGAGCACAA 57.569 40.909 0.00 0.00 0.00 3.33
232 233 4.559502 GCAGGAGTTCAATCCAAAGTTTCC 60.560 45.833 0.00 0.00 42.26 3.13
235 236 3.571401 CAGCAGGAGTTCAATCCAAAGTT 59.429 43.478 0.00 0.00 42.26 2.66
236 237 3.152341 CAGCAGGAGTTCAATCCAAAGT 58.848 45.455 0.00 0.00 42.26 2.66
237 238 2.490903 CCAGCAGGAGTTCAATCCAAAG 59.509 50.000 0.00 0.00 42.26 2.77
349 350 0.320683 CTGTGTGGTCGCTCATTCCA 60.321 55.000 0.00 0.00 0.00 3.53
350 351 1.021390 CCTGTGTGGTCGCTCATTCC 61.021 60.000 0.00 0.00 0.00 3.01
354 355 4.314440 GCCCTGTGTGGTCGCTCA 62.314 66.667 0.00 0.00 0.00 4.26
358 359 4.394712 GGAGGCCCTGTGTGGTCG 62.395 72.222 0.00 0.00 34.30 4.79
399 401 9.912634 CACAATGTTCTATACTGGTCAATTTTT 57.087 29.630 0.00 0.00 0.00 1.94
404 406 8.458573 AAAACACAATGTTCTATACTGGTCAA 57.541 30.769 0.00 0.00 40.14 3.18
447 450 3.124636 CGTAGTGCTGGTTTTTAGCGATT 59.875 43.478 0.00 0.00 44.01 3.34
463 467 2.220133 CGTTGGTTTCCTGAACGTAGTG 59.780 50.000 0.00 0.00 45.00 2.74
499 503 1.673665 CTTGCAGGCAGAGGGACAC 60.674 63.158 0.00 0.00 0.00 3.67
552 1457 0.534877 TTTCGATCGGGCCATCCATG 60.535 55.000 16.41 0.00 34.36 3.66
554 1459 1.146041 CTTTCGATCGGGCCATCCA 59.854 57.895 16.41 0.00 34.36 3.41
564 1469 2.159282 TGAACCTCTACCGCTTTCGATC 60.159 50.000 0.00 0.00 38.10 3.69
566 1471 1.201647 CTGAACCTCTACCGCTTTCGA 59.798 52.381 0.00 0.00 38.10 3.71
573 1478 3.552875 TCTGTATCCTGAACCTCTACCG 58.447 50.000 0.00 0.00 0.00 4.02
593 1498 0.992802 GCTTCCAGTCGACGAACATC 59.007 55.000 10.46 0.00 0.00 3.06
602 1507 1.157870 AACACCAACGCTTCCAGTCG 61.158 55.000 0.00 0.00 0.00 4.18
605 1510 1.002468 CTGAAACACCAACGCTTCCAG 60.002 52.381 0.00 0.00 0.00 3.86
606 1511 1.021202 CTGAAACACCAACGCTTCCA 58.979 50.000 0.00 0.00 0.00 3.53
617 1522 1.664965 AGCCGCGAGACTGAAACAC 60.665 57.895 8.23 0.00 0.00 3.32
645 1550 1.614413 GGTAGGACTTCTAGGGCATCG 59.386 57.143 0.00 0.00 0.00 3.84
666 1571 2.121948 TGATCAGAGCCAGCCAACTAT 58.878 47.619 0.00 0.00 0.00 2.12
677 1582 2.158784 AGGGCAAGAAGATGATCAGAGC 60.159 50.000 0.09 0.00 0.00 4.09
678 1583 3.134262 TCAGGGCAAGAAGATGATCAGAG 59.866 47.826 0.09 0.00 0.00 3.35
697 1627 1.248486 TCTCCCTGTCGTGTCTTCAG 58.752 55.000 0.00 0.00 0.00 3.02
704 1634 0.108615 GTGTCCATCTCCCTGTCGTG 60.109 60.000 0.00 0.00 0.00 4.35
705 1635 0.541998 TGTGTCCATCTCCCTGTCGT 60.542 55.000 0.00 0.00 0.00 4.34
707 1637 0.250513 GGTGTGTCCATCTCCCTGTC 59.749 60.000 0.00 0.00 35.97 3.51
717 1647 2.061578 ACAGACGTGGGTGTGTCCA 61.062 57.895 0.00 0.00 46.67 4.02
724 1654 1.946768 CAAATGACAACAGACGTGGGT 59.053 47.619 0.00 0.00 0.00 4.51
731 1661 7.201696 GGTGAAAGAACTACAAATGACAACAGA 60.202 37.037 0.00 0.00 0.00 3.41
740 1670 6.715347 AGCAAAGGTGAAAGAACTACAAAT 57.285 33.333 0.00 0.00 0.00 2.32
778 1708 4.080638 GGGTGTCTTCTCTTCCTGAATGAT 60.081 45.833 0.00 0.00 0.00 2.45
789 1719 1.625508 GGGTATGGGGGTGTCTTCTCT 60.626 57.143 0.00 0.00 0.00 3.10
806 1736 5.578157 AAATTACAGTTGGTAGTCTGGGT 57.422 39.130 0.00 0.00 36.17 4.51
822 1752 9.561270 GAACCTTGCTCTTGAAGATTAAATTAC 57.439 33.333 0.00 0.00 0.00 1.89
873 1803 6.706716 ACGACTAGATGACTTAGATCATTCGA 59.293 38.462 15.88 0.00 39.48 3.71
884 1814 6.631016 TCAAATAGCAACGACTAGATGACTT 58.369 36.000 0.00 0.00 0.00 3.01
947 1877 9.561270 GCCTATCTGAAGATTTAAGAACAAAAC 57.439 33.333 0.00 0.00 36.05 2.43
977 1907 8.900781 CCATCAAACTCTTGTCATCTAATGAAT 58.099 33.333 0.00 0.00 41.69 2.57
1062 3292 1.613437 AGTTCGCAAAACAATCCAGGG 59.387 47.619 2.21 0.00 0.00 4.45
1067 3297 7.160633 ACAAACATTAGTTCGCAAAACAATC 57.839 32.000 2.21 0.00 36.84 2.67
1086 3317 4.389374 TCTGAAGTGAATCCTGGACAAAC 58.611 43.478 0.00 0.00 0.00 2.93
1089 3320 4.705110 TTTCTGAAGTGAATCCTGGACA 57.295 40.909 0.00 0.00 0.00 4.02
1189 3420 4.097892 AGTCACAGGAATGGTCAACAAAAC 59.902 41.667 0.00 0.00 0.00 2.43
1309 3541 6.149973 TCCAAGACATCATTTTCAAGTGCTAG 59.850 38.462 0.00 0.00 0.00 3.42
1388 3621 9.113838 CTCATGTTCTACCAAAAAGTAGCATAT 57.886 33.333 0.00 0.00 39.71 1.78
1389 3622 7.552687 CCTCATGTTCTACCAAAAAGTAGCATA 59.447 37.037 0.00 0.00 39.71 3.14
1523 3763 8.682936 AGAAGAACTAATATGGGTAAAGCATG 57.317 34.615 0.00 0.00 0.00 4.06
1685 3926 2.393764 GGTTGGACAAATGAAGCAACG 58.606 47.619 0.00 0.00 0.00 4.10
1705 3946 0.396435 TGATATGGTAAGGGCCTGCG 59.604 55.000 6.92 0.00 0.00 5.18
1707 3948 3.077484 CCATGATATGGTAAGGGCCTG 57.923 52.381 6.92 0.00 45.54 4.85
1719 3960 7.510675 AATAATCGAGGTAACCCCATGATAT 57.489 36.000 0.00 0.00 34.66 1.63
1775 4016 7.721399 GGGATTCATGAGGTGTAGTCATTAAAT 59.279 37.037 0.00 0.00 32.06 1.40
1781 4022 2.771943 GGGGATTCATGAGGTGTAGTCA 59.228 50.000 0.00 0.00 0.00 3.41
1823 4064 6.761714 CACCAGTGTCAGAAAGTTTTAGTACT 59.238 38.462 0.00 0.00 0.00 2.73
1855 4096 1.807755 CGCTACCATCACCATCACCAG 60.808 57.143 0.00 0.00 0.00 4.00
1886 4127 1.939838 GCGACCACCATTTCTCGTCTT 60.940 52.381 0.00 0.00 0.00 3.01
1892 4133 1.559682 ACCATAGCGACCACCATTTCT 59.440 47.619 0.00 0.00 0.00 2.52
1903 4144 1.475034 GCCATCTTCCAACCATAGCGA 60.475 52.381 0.00 0.00 0.00 4.93
1936 4177 2.376808 ACGAACAAGAGAGCATCCAG 57.623 50.000 0.00 0.00 33.66 3.86
1937 4178 2.612972 GGAACGAACAAGAGAGCATCCA 60.613 50.000 0.00 0.00 33.66 3.41
1938 4179 2.003301 GGAACGAACAAGAGAGCATCC 58.997 52.381 0.00 0.00 33.66 3.51
1939 4180 2.003301 GGGAACGAACAAGAGAGCATC 58.997 52.381 0.00 0.00 0.00 3.91
1940 4181 1.625818 AGGGAACGAACAAGAGAGCAT 59.374 47.619 0.00 0.00 0.00 3.79
1941 4182 1.048601 AGGGAACGAACAAGAGAGCA 58.951 50.000 0.00 0.00 0.00 4.26
1972 4213 5.090845 ACATTTATAAAAGGGGCCAACACT 58.909 37.500 4.39 0.00 0.00 3.55
2010 4251 1.071385 CAAGTGTGAGGAGCTCCAAGT 59.929 52.381 33.90 14.59 38.89 3.16
2069 4310 6.204688 CCAAGTAAATAGAGTGCAAGACAACA 59.795 38.462 0.00 0.00 0.00 3.33
2070 4311 6.204882 ACCAAGTAAATAGAGTGCAAGACAAC 59.795 38.462 0.00 0.00 0.00 3.32
2072 4313 5.700832 CACCAAGTAAATAGAGTGCAAGACA 59.299 40.000 0.00 0.00 0.00 3.41
2080 4321 3.587506 AGGCACCACCAAGTAAATAGAGT 59.412 43.478 0.00 0.00 43.14 3.24
2085 4326 1.427368 TGGAGGCACCACCAAGTAAAT 59.573 47.619 3.06 0.00 44.64 1.40
2098 4339 2.999185 AAAGGAAGGAATTGGAGGCA 57.001 45.000 0.00 0.00 0.00 4.75
2115 4356 8.990163 AGGAAACAAGGAAAATGTAGAGTAAA 57.010 30.769 0.00 0.00 0.00 2.01
2118 4359 7.290813 AGAAGGAAACAAGGAAAATGTAGAGT 58.709 34.615 0.00 0.00 0.00 3.24
2119 4360 7.751768 AGAAGGAAACAAGGAAAATGTAGAG 57.248 36.000 0.00 0.00 0.00 2.43
2149 4391 8.230472 AGATCCCAAACATGAAGATAAATCAC 57.770 34.615 0.00 0.00 0.00 3.06
2208 4450 6.493115 TCATCACACCATTGTTTAAACCAGAT 59.507 34.615 15.59 4.76 31.66 2.90
2209 4451 5.830457 TCATCACACCATTGTTTAAACCAGA 59.170 36.000 15.59 2.58 31.66 3.86
2210 4452 6.083098 TCATCACACCATTGTTTAAACCAG 57.917 37.500 15.59 5.49 31.66 4.00
2211 4453 5.508825 GCTCATCACACCATTGTTTAAACCA 60.509 40.000 15.59 5.18 31.66 3.67
2212 4454 4.923281 GCTCATCACACCATTGTTTAAACC 59.077 41.667 15.59 0.00 31.66 3.27
2213 4455 4.616802 CGCTCATCACACCATTGTTTAAAC 59.383 41.667 11.54 11.54 31.66 2.01
2214 4456 4.277174 ACGCTCATCACACCATTGTTTAAA 59.723 37.500 0.00 0.00 31.66 1.52
2215 4457 3.818210 ACGCTCATCACACCATTGTTTAA 59.182 39.130 0.00 0.00 31.66 1.52
2216 4458 3.407698 ACGCTCATCACACCATTGTTTA 58.592 40.909 0.00 0.00 31.66 2.01
2217 4459 2.229792 ACGCTCATCACACCATTGTTT 58.770 42.857 0.00 0.00 31.66 2.83
2218 4460 1.896220 ACGCTCATCACACCATTGTT 58.104 45.000 0.00 0.00 31.66 2.83
2219 4461 2.760634 TACGCTCATCACACCATTGT 57.239 45.000 0.00 0.00 35.84 2.71
2220 4462 4.418013 TTTTACGCTCATCACACCATTG 57.582 40.909 0.00 0.00 0.00 2.82
2221 4463 5.643379 ATTTTTACGCTCATCACACCATT 57.357 34.783 0.00 0.00 0.00 3.16
2222 4464 6.542005 TGATATTTTTACGCTCATCACACCAT 59.458 34.615 0.00 0.00 0.00 3.55
2223 4465 5.877564 TGATATTTTTACGCTCATCACACCA 59.122 36.000 0.00 0.00 0.00 4.17
2224 4466 6.037172 AGTGATATTTTTACGCTCATCACACC 59.963 38.462 13.26 0.00 42.90 4.16
2225 4467 7.005062 AGTGATATTTTTACGCTCATCACAC 57.995 36.000 13.26 0.00 42.90 3.82
2226 4468 6.816140 TGAGTGATATTTTTACGCTCATCACA 59.184 34.615 13.26 0.00 43.16 3.58
2227 4469 7.234187 TGAGTGATATTTTTACGCTCATCAC 57.766 36.000 0.00 4.72 43.16 3.06
2231 4473 5.483811 TGGTGAGTGATATTTTTACGCTCA 58.516 37.500 0.00 0.00 44.89 4.26
2232 4474 6.417191 TTGGTGAGTGATATTTTTACGCTC 57.583 37.500 0.00 0.00 40.26 5.03
2233 4475 8.559536 CATATTGGTGAGTGATATTTTTACGCT 58.440 33.333 0.00 0.00 0.00 5.07
2234 4476 8.556194 TCATATTGGTGAGTGATATTTTTACGC 58.444 33.333 0.00 0.00 0.00 4.42
2238 4480 9.347240 CTCCTCATATTGGTGAGTGATATTTTT 57.653 33.333 3.54 0.00 43.22 1.94
2239 4481 7.446625 GCTCCTCATATTGGTGAGTGATATTTT 59.553 37.037 3.54 0.00 43.22 1.82
2240 4482 6.939163 GCTCCTCATATTGGTGAGTGATATTT 59.061 38.462 3.54 0.00 43.22 1.40
2241 4483 6.043590 TGCTCCTCATATTGGTGAGTGATATT 59.956 38.462 3.54 0.00 43.22 1.28
2242 4484 5.545335 TGCTCCTCATATTGGTGAGTGATAT 59.455 40.000 3.54 0.00 43.22 1.63
2243 4485 4.901250 TGCTCCTCATATTGGTGAGTGATA 59.099 41.667 3.54 0.00 43.22 2.15
2244 4486 3.713248 TGCTCCTCATATTGGTGAGTGAT 59.287 43.478 3.54 0.00 43.22 3.06
2245 4487 3.106827 TGCTCCTCATATTGGTGAGTGA 58.893 45.455 3.54 0.69 43.22 3.41
2246 4488 3.201290 GTGCTCCTCATATTGGTGAGTG 58.799 50.000 3.54 0.00 43.22 3.51
2247 4489 2.171448 GGTGCTCCTCATATTGGTGAGT 59.829 50.000 0.00 0.00 43.22 3.41
2248 4490 2.171237 TGGTGCTCCTCATATTGGTGAG 59.829 50.000 6.34 0.00 44.12 3.51
2249 4491 2.092968 GTGGTGCTCCTCATATTGGTGA 60.093 50.000 6.34 0.00 34.23 4.02
2250 4492 2.292267 GTGGTGCTCCTCATATTGGTG 58.708 52.381 6.34 0.00 34.23 4.17
2251 4493 1.915489 TGTGGTGCTCCTCATATTGGT 59.085 47.619 6.34 0.00 33.07 3.67
2252 4494 2.684881 GTTGTGGTGCTCCTCATATTGG 59.315 50.000 10.14 0.00 37.13 3.16
2253 4495 2.352651 CGTTGTGGTGCTCCTCATATTG 59.647 50.000 10.14 0.00 37.13 1.90
2254 4496 2.236146 TCGTTGTGGTGCTCCTCATATT 59.764 45.455 10.14 0.00 37.13 1.28
2255 4497 1.831106 TCGTTGTGGTGCTCCTCATAT 59.169 47.619 10.14 0.00 37.13 1.78
2256 4498 1.067142 GTCGTTGTGGTGCTCCTCATA 60.067 52.381 10.14 0.28 37.13 2.15
2257 4499 0.320771 GTCGTTGTGGTGCTCCTCAT 60.321 55.000 10.14 0.00 37.13 2.90
2258 4500 1.069090 GTCGTTGTGGTGCTCCTCA 59.931 57.895 6.34 5.89 35.73 3.86
2259 4501 1.668151 GGTCGTTGTGGTGCTCCTC 60.668 63.158 6.34 2.98 34.23 3.71
2260 4502 1.978455 TTGGTCGTTGTGGTGCTCCT 61.978 55.000 6.34 0.00 34.23 3.69
2261 4503 0.889186 ATTGGTCGTTGTGGTGCTCC 60.889 55.000 0.00 0.00 0.00 4.70
2262 4504 0.517316 GATTGGTCGTTGTGGTGCTC 59.483 55.000 0.00 0.00 0.00 4.26
2263 4505 0.179032 TGATTGGTCGTTGTGGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
2264 4506 0.881118 ATGATTGGTCGTTGTGGTGC 59.119 50.000 0.00 0.00 0.00 5.01
2265 4507 1.468520 GGATGATTGGTCGTTGTGGTG 59.531 52.381 0.00 0.00 0.00 4.17
2266 4508 1.613255 GGGATGATTGGTCGTTGTGGT 60.613 52.381 0.00 0.00 0.00 4.16
2267 4509 1.094785 GGGATGATTGGTCGTTGTGG 58.905 55.000 0.00 0.00 0.00 4.17
2268 4510 2.113860 AGGGATGATTGGTCGTTGTG 57.886 50.000 0.00 0.00 0.00 3.33
2269 4511 3.008594 TGTTAGGGATGATTGGTCGTTGT 59.991 43.478 0.00 0.00 0.00 3.32
2270 4512 3.374058 GTGTTAGGGATGATTGGTCGTTG 59.626 47.826 0.00 0.00 0.00 4.10
2271 4513 3.008594 TGTGTTAGGGATGATTGGTCGTT 59.991 43.478 0.00 0.00 0.00 3.85
2272 4514 2.569853 TGTGTTAGGGATGATTGGTCGT 59.430 45.455 0.00 0.00 0.00 4.34
2273 4515 3.260475 TGTGTTAGGGATGATTGGTCG 57.740 47.619 0.00 0.00 0.00 4.79
2274 4516 3.809832 CGATGTGTTAGGGATGATTGGTC 59.190 47.826 0.00 0.00 0.00 4.02
2275 4517 3.433598 CCGATGTGTTAGGGATGATTGGT 60.434 47.826 0.00 0.00 0.00 3.67
2276 4518 3.141398 CCGATGTGTTAGGGATGATTGG 58.859 50.000 0.00 0.00 0.00 3.16
2277 4519 3.808728 ACCGATGTGTTAGGGATGATTG 58.191 45.455 0.00 0.00 0.00 2.67
2278 4520 3.711704 AGACCGATGTGTTAGGGATGATT 59.288 43.478 0.00 0.00 0.00 2.57
2279 4521 3.070159 CAGACCGATGTGTTAGGGATGAT 59.930 47.826 0.00 0.00 0.00 2.45
2280 4522 2.430694 CAGACCGATGTGTTAGGGATGA 59.569 50.000 0.00 0.00 0.00 2.92
2281 4523 2.430694 TCAGACCGATGTGTTAGGGATG 59.569 50.000 0.00 0.00 0.00 3.51
2282 4524 2.747177 TCAGACCGATGTGTTAGGGAT 58.253 47.619 0.00 0.00 0.00 3.85
2283 4525 2.225382 TCAGACCGATGTGTTAGGGA 57.775 50.000 0.00 0.00 0.00 4.20
2284 4526 3.543680 ATTCAGACCGATGTGTTAGGG 57.456 47.619 0.00 0.00 0.00 3.53
2285 4527 5.661458 AGTTATTCAGACCGATGTGTTAGG 58.339 41.667 0.00 0.00 0.00 2.69
2286 4528 6.036083 CCAAGTTATTCAGACCGATGTGTTAG 59.964 42.308 0.00 0.00 0.00 2.34
2287 4529 5.872617 CCAAGTTATTCAGACCGATGTGTTA 59.127 40.000 0.00 0.00 0.00 2.41
2288 4530 4.695455 CCAAGTTATTCAGACCGATGTGTT 59.305 41.667 0.00 0.00 0.00 3.32
2289 4531 4.253685 CCAAGTTATTCAGACCGATGTGT 58.746 43.478 0.00 0.00 0.00 3.72
2290 4532 3.623060 CCCAAGTTATTCAGACCGATGTG 59.377 47.826 0.00 0.00 0.00 3.21
2291 4533 3.517901 TCCCAAGTTATTCAGACCGATGT 59.482 43.478 0.00 0.00 0.00 3.06
2292 4534 4.137116 TCCCAAGTTATTCAGACCGATG 57.863 45.455 0.00 0.00 0.00 3.84
2293 4535 4.469945 TCTTCCCAAGTTATTCAGACCGAT 59.530 41.667 0.00 0.00 0.00 4.18
2294 4536 3.835978 TCTTCCCAAGTTATTCAGACCGA 59.164 43.478 0.00 0.00 0.00 4.69
2295 4537 4.202245 TCTTCCCAAGTTATTCAGACCG 57.798 45.455 0.00 0.00 0.00 4.79
2296 4538 6.004574 AGTTTCTTCCCAAGTTATTCAGACC 58.995 40.000 0.00 0.00 0.00 3.85
2297 4539 6.128526 CGAGTTTCTTCCCAAGTTATTCAGAC 60.129 42.308 0.00 0.00 0.00 3.51
2298 4540 5.932303 CGAGTTTCTTCCCAAGTTATTCAGA 59.068 40.000 0.00 0.00 0.00 3.27
2299 4541 5.701290 ACGAGTTTCTTCCCAAGTTATTCAG 59.299 40.000 0.00 0.00 0.00 3.02
2300 4542 5.617252 ACGAGTTTCTTCCCAAGTTATTCA 58.383 37.500 0.00 0.00 0.00 2.57
2301 4543 5.121925 GGACGAGTTTCTTCCCAAGTTATTC 59.878 44.000 0.00 0.00 29.30 1.75
2302 4544 5.001874 GGACGAGTTTCTTCCCAAGTTATT 58.998 41.667 0.00 0.00 29.30 1.40
2303 4545 4.041198 TGGACGAGTTTCTTCCCAAGTTAT 59.959 41.667 0.00 0.00 34.21 1.89
2304 4546 3.388676 TGGACGAGTTTCTTCCCAAGTTA 59.611 43.478 0.00 0.00 34.21 2.24
2305 4547 2.171870 TGGACGAGTTTCTTCCCAAGTT 59.828 45.455 0.00 0.00 34.21 2.66
2306 4548 1.766496 TGGACGAGTTTCTTCCCAAGT 59.234 47.619 0.00 0.00 34.21 3.16
2307 4549 2.143925 GTGGACGAGTTTCTTCCCAAG 58.856 52.381 0.00 0.00 34.21 3.61
2308 4550 1.202722 GGTGGACGAGTTTCTTCCCAA 60.203 52.381 0.00 0.00 34.21 4.12
2309 4551 0.395312 GGTGGACGAGTTTCTTCCCA 59.605 55.000 0.00 0.00 34.21 4.37
2310 4552 0.395312 TGGTGGACGAGTTTCTTCCC 59.605 55.000 0.00 0.00 34.21 3.97
2311 4553 1.070289 AGTGGTGGACGAGTTTCTTCC 59.930 52.381 0.00 0.00 35.56 3.46
2312 4554 2.528041 AGTGGTGGACGAGTTTCTTC 57.472 50.000 0.00 0.00 0.00 2.87
2313 4555 3.277142 AAAGTGGTGGACGAGTTTCTT 57.723 42.857 0.00 0.00 0.00 2.52
2314 4556 3.203716 GAAAAGTGGTGGACGAGTTTCT 58.796 45.455 0.00 0.00 0.00 2.52
2315 4557 2.289820 GGAAAAGTGGTGGACGAGTTTC 59.710 50.000 0.00 0.00 0.00 2.78
2316 4558 2.092592 AGGAAAAGTGGTGGACGAGTTT 60.093 45.455 0.00 0.00 0.00 2.66
2317 4559 1.489230 AGGAAAAGTGGTGGACGAGTT 59.511 47.619 0.00 0.00 0.00 3.01
2318 4560 1.070289 GAGGAAAAGTGGTGGACGAGT 59.930 52.381 0.00 0.00 0.00 4.18
2319 4561 1.608283 GGAGGAAAAGTGGTGGACGAG 60.608 57.143 0.00 0.00 0.00 4.18
2320 4562 0.395312 GGAGGAAAAGTGGTGGACGA 59.605 55.000 0.00 0.00 0.00 4.20
2321 4563 0.107831 TGGAGGAAAAGTGGTGGACG 59.892 55.000 0.00 0.00 0.00 4.79
2322 4564 1.605753 GTGGAGGAAAAGTGGTGGAC 58.394 55.000 0.00 0.00 0.00 4.02
2323 4565 0.476771 GGTGGAGGAAAAGTGGTGGA 59.523 55.000 0.00 0.00 0.00 4.02
2324 4566 0.184933 TGGTGGAGGAAAAGTGGTGG 59.815 55.000 0.00 0.00 0.00 4.61
2325 4567 1.318576 GTGGTGGAGGAAAAGTGGTG 58.681 55.000 0.00 0.00 0.00 4.17
2326 4568 0.185175 GGTGGTGGAGGAAAAGTGGT 59.815 55.000 0.00 0.00 0.00 4.16
2327 4569 0.184933 TGGTGGTGGAGGAAAAGTGG 59.815 55.000 0.00 0.00 0.00 4.00
2328 4570 1.318576 GTGGTGGTGGAGGAAAAGTG 58.681 55.000 0.00 0.00 0.00 3.16
2329 4571 0.179029 CGTGGTGGTGGAGGAAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
2330 4572 0.889186 CCGTGGTGGTGGAGGAAAAG 60.889 60.000 0.00 0.00 0.00 2.27
2331 4573 1.149627 CCGTGGTGGTGGAGGAAAA 59.850 57.895 0.00 0.00 0.00 2.29
2332 4574 2.833227 CCGTGGTGGTGGAGGAAA 59.167 61.111 0.00 0.00 0.00 3.13
2333 4575 3.948719 GCCGTGGTGGTGGAGGAA 61.949 66.667 0.00 0.00 41.21 3.36
2335 4577 4.704833 CTGCCGTGGTGGTGGAGG 62.705 72.222 0.00 0.00 41.21 4.30
2339 4581 4.624364 TCTGCTGCCGTGGTGGTG 62.624 66.667 0.00 0.00 41.21 4.17
2340 4582 4.320456 CTCTGCTGCCGTGGTGGT 62.320 66.667 0.00 0.00 41.21 4.16
2341 4583 3.535629 TTCTCTGCTGCCGTGGTGG 62.536 63.158 0.00 0.00 42.50 4.61
2342 4584 2.031012 TTCTCTGCTGCCGTGGTG 59.969 61.111 0.00 0.00 0.00 4.17
2343 4585 2.345244 CTTCTCTGCTGCCGTGGT 59.655 61.111 0.00 0.00 0.00 4.16
2344 4586 2.435586 CCTTCTCTGCTGCCGTGG 60.436 66.667 0.00 0.00 0.00 4.94
2345 4587 1.447489 CTCCTTCTCTGCTGCCGTG 60.447 63.158 0.00 0.00 0.00 4.94
2346 4588 2.654079 CCTCCTTCTCTGCTGCCGT 61.654 63.158 0.00 0.00 0.00 5.68
2347 4589 2.186384 CCTCCTTCTCTGCTGCCG 59.814 66.667 0.00 0.00 0.00 5.69
2348 4590 2.588989 CCCTCCTTCTCTGCTGCC 59.411 66.667 0.00 0.00 0.00 4.85
2349 4591 1.970352 CTCCCCTCCTTCTCTGCTGC 61.970 65.000 0.00 0.00 0.00 5.25
2350 4592 0.325110 TCTCCCCTCCTTCTCTGCTG 60.325 60.000 0.00 0.00 0.00 4.41
2351 4593 0.032217 CTCTCCCCTCCTTCTCTGCT 60.032 60.000 0.00 0.00 0.00 4.24
2352 4594 1.685355 GCTCTCCCCTCCTTCTCTGC 61.685 65.000 0.00 0.00 0.00 4.26
2353 4595 1.048160 GGCTCTCCCCTCCTTCTCTG 61.048 65.000 0.00 0.00 0.00 3.35
2354 4596 1.313129 GGCTCTCCCCTCCTTCTCT 59.687 63.158 0.00 0.00 0.00 3.10
2355 4597 3.964108 GGCTCTCCCCTCCTTCTC 58.036 66.667 0.00 0.00 0.00 2.87
2365 4607 2.505364 ATTTGGGCTGTGGGCTCTCC 62.505 60.000 0.00 0.00 43.07 3.71
2366 4608 0.613012 AATTTGGGCTGTGGGCTCTC 60.613 55.000 0.00 0.00 43.07 3.20
2367 4609 0.901580 CAATTTGGGCTGTGGGCTCT 60.902 55.000 0.00 0.00 43.07 4.09
2368 4610 1.593265 CAATTTGGGCTGTGGGCTC 59.407 57.895 0.00 0.00 42.93 4.70
2369 4611 2.586293 GCAATTTGGGCTGTGGGCT 61.586 57.895 0.00 0.00 41.46 5.19
2370 4612 2.046988 GCAATTTGGGCTGTGGGC 60.047 61.111 0.00 0.00 40.90 5.36
2371 4613 1.555477 ATGGCAATTTGGGCTGTGGG 61.555 55.000 0.00 0.00 0.00 4.61
2372 4614 0.391927 CATGGCAATTTGGGCTGTGG 60.392 55.000 0.00 0.00 0.00 4.17
2373 4615 1.022451 GCATGGCAATTTGGGCTGTG 61.022 55.000 0.00 0.00 0.00 3.66
2374 4616 1.297364 GCATGGCAATTTGGGCTGT 59.703 52.632 0.00 0.00 0.00 4.40
2375 4617 1.450669 GGCATGGCAATTTGGGCTG 60.451 57.895 15.47 0.00 0.00 4.85
2376 4618 1.614226 AGGCATGGCAATTTGGGCT 60.614 52.632 22.64 0.00 0.00 5.19
2377 4619 1.153309 GAGGCATGGCAATTTGGGC 60.153 57.895 22.64 0.00 0.00 5.36
2378 4620 1.142314 CGAGGCATGGCAATTTGGG 59.858 57.895 22.64 0.00 0.00 4.12
2379 4621 0.748450 ATCGAGGCATGGCAATTTGG 59.252 50.000 22.64 1.81 0.00 3.28
2380 4622 3.928727 ATATCGAGGCATGGCAATTTG 57.071 42.857 22.64 4.95 0.00 2.32
2381 4623 6.594788 AATAATATCGAGGCATGGCAATTT 57.405 33.333 22.64 0.00 0.00 1.82
2382 4624 6.392354 CAAATAATATCGAGGCATGGCAATT 58.608 36.000 22.64 13.79 0.00 2.32
2383 4625 5.622914 GCAAATAATATCGAGGCATGGCAAT 60.623 40.000 22.64 13.63 0.00 3.56
2384 4626 4.321156 GCAAATAATATCGAGGCATGGCAA 60.321 41.667 22.64 6.76 0.00 4.52
2385 4627 3.191162 GCAAATAATATCGAGGCATGGCA 59.809 43.478 22.64 0.31 0.00 4.92
2386 4628 3.728864 CGCAAATAATATCGAGGCATGGC 60.729 47.826 12.14 12.14 0.00 4.40
2387 4629 3.684305 TCGCAAATAATATCGAGGCATGG 59.316 43.478 0.00 0.00 0.00 3.66
2388 4630 4.926860 TCGCAAATAATATCGAGGCATG 57.073 40.909 0.00 0.00 0.00 4.06
2389 4631 5.536554 CTTCGCAAATAATATCGAGGCAT 57.463 39.130 0.00 0.00 32.31 4.40
2390 4632 4.990543 CTTCGCAAATAATATCGAGGCA 57.009 40.909 0.00 0.00 32.31 4.75
2391 4633 3.737305 GCTTCGCAAATAATATCGAGGC 58.263 45.455 2.20 2.20 44.22 4.70
2392 4634 4.990543 TGCTTCGCAAATAATATCGAGG 57.009 40.909 0.00 0.00 34.76 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.