AutoCloner

Multiple sequence alignment - TraesCS6B01G215500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G215500	chr6B	100.000	2368	0	0	1	2368	293113007	293115374	0.000000e+00	4373
1	TraesCS6B01G215500	chr6B	92.282	596	44	2	1	595	460284342	460284936	0.000000e+00	845
2	TraesCS6B01G215500	chr6B	90.756	595	53	1	2	596	452570534	452571126	0.000000e+00	793
3	TraesCS6B01G215500	chr5A	85.279	951	137	3	1351	2301	420278056	420277109	0.000000e+00	977
4	TraesCS6B01G215500	chr5A	87.975	790	88	7	597	1384	420288444	420287660	0.000000e+00	926
5	TraesCS6B01G215500	chr4D	89.960	757	73	3	599	1353	298384099	298384854	0.000000e+00	974
6	TraesCS6B01G215500	chr4D	85.965	114	10	6	2253	2363	298386294	298386404	1.490000e-22	117
7	TraesCS6B01G215500	chr2D	89.182	758	81	1	597	1353	161385989	161385232	0.000000e+00	944
8	TraesCS6B01G215500	chr2D	89.050	758	81	2	597	1353	562345397	562346153	0.000000e+00	939
9	TraesCS6B01G215500	chr3D	88.522	758	85	2	597	1353	193931194	193930438	0.000000e+00	917
10	TraesCS6B01G215500	chr3D	85.965	114	10	6	2253	2363	193870557	193870447	1.490000e-22	117
11	TraesCS6B01G215500	chr5D	89.571	700	70	3	597	1294	205358876	205359574	0.000000e+00	885
12	TraesCS6B01G215500	chr5D	84.956	113	11	6	2254	2363	205361051	205361160	2.490000e-20	110
13	TraesCS6B01G215500	chr2B	83.526	953	150	5	1351	2298	34261103	34260153	0.000000e+00	883
14	TraesCS6B01G215500	chr2B	88.591	447	50	1	908	1353	34262023	34261577	2.070000e-150	542
15	TraesCS6B01G215500	chr2B	90.159	315	31	0	597	911	34274484	34274170	6.090000e-111	411
16	TraesCS6B01G215500	chr1B	91.261	595	52	0	3	597	533146528	533147122	0.000000e+00	811
17	TraesCS6B01G215500	chr1B	91.122	597	51	2	1	597	118303367	118302773	0.000000e+00	808
18	TraesCS6B01G215500	chr1B	91.032	591	48	2	1	591	117963059	117963644	0.000000e+00	793
19	TraesCS6B01G215500	chr1B	90.285	597	58	0	1	597	268368523	268369119	0.000000e+00	782
20	TraesCS6B01G215500	chr1B	90.285	597	57	1	1	597	364565180	364564585	0.000000e+00	780
21	TraesCS6B01G215500	chr1B	84.440	527	82	0	1580	2106	176842565	176842039	9.700000e-144	520
22	TraesCS6B01G215500	chr3B	91.122	597	51	2	1	597	783734928	783734334	0.000000e+00	808
23	TraesCS6B01G215500	chr4A	90.620	597	56	0	1	597	705701472	705700876	0.000000e+00	793
24	TraesCS6B01G215500	chr2A	87.857	420	51	0	597	1016	33669458	33669877	5.880000e-136	494

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G215500	chr6B	293113007	293115374	2367	False	4373.0	4373	100.0000	1	2368	1	chr6B.!!$F1	2367
1	TraesCS6B01G215500	chr6B	460284342	460284936	594	False	845.0	845	92.2820	1	595	1	chr6B.!!$F3	594
2	TraesCS6B01G215500	chr6B	452570534	452571126	592	False	793.0	793	90.7560	2	596	1	chr6B.!!$F2	594
3	TraesCS6B01G215500	chr5A	420277109	420278056	947	True	977.0	977	85.2790	1351	2301	1	chr5A.!!$R1	950
4	TraesCS6B01G215500	chr5A	420287660	420288444	784	True	926.0	926	87.9750	597	1384	1	chr5A.!!$R2	787
5	TraesCS6B01G215500	chr4D	298384099	298386404	2305	False	545.5	974	87.9625	599	2363	2	chr4D.!!$F1	1764
6	TraesCS6B01G215500	chr2D	161385232	161385989	757	True	944.0	944	89.1820	597	1353	1	chr2D.!!$R1	756
7	TraesCS6B01G215500	chr2D	562345397	562346153	756	False	939.0	939	89.0500	597	1353	1	chr2D.!!$F1	756
8	TraesCS6B01G215500	chr3D	193930438	193931194	756	True	917.0	917	88.5220	597	1353	1	chr3D.!!$R2	756
9	TraesCS6B01G215500	chr5D	205358876	205361160	2284	False	497.5	885	87.2635	597	2363	2	chr5D.!!$F1	1766
10	TraesCS6B01G215500	chr2B	34260153	34262023	1870	True	712.5	883	86.0585	908	2298	2	chr2B.!!$R2	1390
11	TraesCS6B01G215500	chr1B	533146528	533147122	594	False	811.0	811	91.2610	3	597	1	chr1B.!!$F3	594
12	TraesCS6B01G215500	chr1B	118302773	118303367	594	True	808.0	808	91.1220	1	597	1	chr1B.!!$R1	596
13	TraesCS6B01G215500	chr1B	117963059	117963644	585	False	793.0	793	91.0320	1	591	1	chr1B.!!$F1	590
14	TraesCS6B01G215500	chr1B	268368523	268369119	596	False	782.0	782	90.2850	1	597	1	chr1B.!!$F2	596
15	TraesCS6B01G215500	chr1B	364564585	364565180	595	True	780.0	780	90.2850	1	597	1	chr1B.!!$R3	596
16	TraesCS6B01G215500	chr1B	176842039	176842565	526	True	520.0	520	84.4400	1580	2106	1	chr1B.!!$R2	526
17	TraesCS6B01G215500	chr3B	783734334	783734928	594	True	808.0	808	91.1220	1	597	1	chr3B.!!$R1	596
18	TraesCS6B01G215500	chr4A	705700876	705701472	596	True	793.0	793	90.6200	1	597	1	chr4A.!!$R1	596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
603	609	0.035056	CCAAAGATGAACCGGCCTCT	60.035	55.0	0.0	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1911	2431	0.173481	CGATTCTCAGGGAAGCACGA	59.827	55.0	0.0	0.0	40.02	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
257	262	4.812476	CGACAATCGGGCTGCGGA	62.812	66.667	0.00	0.00	36.00	5.54
324	330	0.780637	TATTGGACAAACCCTGCCCA	59.219	50.000	0.00	0.00	35.43	5.36
354	360	0.249447	CTCCGCACACAGTCTCAACA	60.249	55.000	0.00	0.00	0.00	3.33
357	363	0.301687	CGCACACAGTCTCAACACAC	59.698	55.000	0.00	0.00	0.00	3.82
424	430	1.156736	GTCAATCCTCACCACAACCG	58.843	55.000	0.00	0.00	0.00	4.44
542	548	1.927174	CGCCGAAGTCCATCAAGTTAG	59.073	52.381	0.00	0.00	0.00	2.34
603	609	0.035056	CCAAAGATGAACCGGCCTCT	60.035	55.000	0.00	0.00	0.00	3.69
621	627	2.124507	CTTTCGTCCCTGCTTCCCCA	62.125	60.000	0.00	0.00	0.00	4.96
622	628	1.497309	TTTCGTCCCTGCTTCCCCAT	61.497	55.000	0.00	0.00	0.00	4.00
628	634	4.845580	CTGCTTCCCCATCGCGCT	62.846	66.667	5.56	0.00	0.00	5.92
633	639	3.247056	TTCCCCATCGCGCTGTCAA	62.247	57.895	9.34	0.00	0.00	3.18
636	642	2.809174	CCATCGCGCTGTCAACGA	60.809	61.111	9.34	0.00	40.53	3.85
702	708	3.726557	TGCTTCATCCTCAAGAACCAT	57.273	42.857	0.00	0.00	0.00	3.55
726	732	4.457496	CTGCTCACGGCCACGGAT	62.457	66.667	2.24	0.00	46.48	4.18
805	811	4.479993	GGCCGCATCTGCTGAGGT	62.480	66.667	7.11	0.00	45.89	3.85
811	817	0.671781	GCATCTGCTGAGGTTCACGT	60.672	55.000	7.11	0.00	38.21	4.49
822	828	4.572571	TTCACGTGCCACCACCCC	62.573	66.667	11.67	0.00	38.79	4.95
851	857	1.479709	CTCATCCACTTCGAGGACCT	58.520	55.000	0.00	0.00	38.13	3.85
855	861	2.286523	CCACTTCGAGGACCTGGCT	61.287	63.158	0.00	0.00	0.00	4.75
914	921	1.671901	GAGGGCGTCTCCTTCCTCAG	61.672	65.000	0.00	0.00	43.78	3.35
990	997	0.388649	GTGTCGTCATCGAGCACCTT	60.389	55.000	0.00	0.00	46.96	3.50
996	1003	0.909610	TCATCGAGCACCTTCCCCTT	60.910	55.000	0.00	0.00	0.00	3.95
1059	1066	1.522355	CTGCATCATCGACCGGCTT	60.522	57.895	0.00	0.00	0.00	4.35
1081	1088	2.031163	GCCACACCTTCGAGTGCT	59.969	61.111	4.81	0.00	41.67	4.40
1089	1096	1.367471	CTTCGAGTGCTGGGACACA	59.633	57.895	0.00	0.00	43.23	3.72
1148	1155	4.047125	CATCCCCACCCGCCACTT	62.047	66.667	0.00	0.00	0.00	3.16
1170	1177	3.077556	TCCAGCTTCGAGGAGGGC	61.078	66.667	0.00	0.00	0.00	5.19
1221	1229	4.711949	CCGCTGCTCAGGCCAACT	62.712	66.667	5.01	0.00	37.74	3.16
1232	1240	2.203337	GCCAACTGTGCTGTCCCA	60.203	61.111	0.00	0.00	0.00	4.37
1371	1379	3.767230	CCAGCAACGACTGACGCG	61.767	66.667	3.53	3.53	46.94	6.01
1413	1929	1.078848	GCTCGAAGACCATGTGGCT	60.079	57.895	0.00	0.00	39.32	4.75
1434	1950	2.953020	TGTTTCTTTGCAAACAAGCGT	58.047	38.095	8.05	0.00	42.11	5.07
1438	1954	1.742831	TCTTTGCAAACAAGCGTGACT	59.257	42.857	8.05	0.00	37.04	3.41
1527	2044	2.659016	CAGCCGCTGTCCTTCTCA	59.341	61.111	12.54	0.00	0.00	3.27
1532	2049	0.036010	CCGCTGTCCTTCTCACCAAT	60.036	55.000	0.00	0.00	0.00	3.16
1537	2054	1.355381	TGTCCTTCTCACCAATGCCAT	59.645	47.619	0.00	0.00	0.00	4.40
1538	2055	2.575735	TGTCCTTCTCACCAATGCCATA	59.424	45.455	0.00	0.00	0.00	2.74
1568	2085	2.029020	TCTCCAAGACAACGACAGATGG	60.029	50.000	0.00	0.00	0.00	3.51
1569	2086	0.798776	CCAAGACAACGACAGATGGC	59.201	55.000	0.00	0.00	0.00	4.40
1659	2176	2.204074	TCCAAGCCAGCTACCCCA	60.204	61.111	0.00	0.00	0.00	4.96
1694	2211	1.852157	TGCACCTTCCCCTGGTCAT	60.852	57.895	0.00	0.00	35.28	3.06
1714	2231	2.782222	GCGTAGATGGACGGCCTCA	61.782	63.158	9.82	0.00	43.13	3.86
1743	2263	1.376553	GTGCAGCTCCCAGGAAGAC	60.377	63.158	0.00	0.00	0.00	3.01
1757	2277	3.067180	CAGGAAGACAAAAGCAAGCAGAA	59.933	43.478	0.00	0.00	0.00	3.02
1763	2283	1.014352	AAAAGCAAGCAGAACGTCGT	58.986	45.000	0.00	0.00	0.00	4.34
1788	2308	0.601558	CCCTCTTCTCCGACGTTCAA	59.398	55.000	0.00	0.00	0.00	2.69
1802	2322	1.202177	CGTTCAAAAGCCCATCATCGG	60.202	52.381	0.00	0.00	0.00	4.18
1849	2369	2.259511	CAAAGCCCAAGAAGCCGC	59.740	61.111	0.00	0.00	0.00	6.53
1894	2414	1.333619	GTCAAGCCGAAGCAAAGAACA	59.666	47.619	0.00	0.00	43.56	3.18
1905	2425	0.584876	CAAAGAACAACGTCCCGGTC	59.415	55.000	0.00	0.00	0.00	4.79
1976	2496	2.796032	CGAGCGACAAGATGACAGCATA	60.796	50.000	0.00	0.00	34.11	3.14
1999	2519	1.458639	GGCCAAGAAGCTTGTGCAGT	61.459	55.000	2.10	0.00	42.74	4.40
2001	2521	0.318445	CCAAGAAGCTTGTGCAGTGC	60.318	55.000	8.58	8.58	42.74	4.40
2002	2522	0.318445	CAAGAAGCTTGTGCAGTGCC	60.318	55.000	13.72	4.57	42.74	5.01
2010	2530	1.677576	CTTGTGCAGTGCCTTGAAGAA	59.322	47.619	13.72	0.00	0.00	2.52
2046	2566	1.137872	GACATCCATGGTCTCGAGCTT	59.862	52.381	12.58	0.00	32.54	3.74
2059	2579	2.750166	CTCGAGCTTCTCACTCACCTTA	59.250	50.000	0.00	0.00	33.58	2.69
2061	2581	3.764434	TCGAGCTTCTCACTCACCTTAAT	59.236	43.478	0.00	0.00	33.58	1.40
2153	2673	7.230510	TGTTAGCAAAACTTCATGTAATCCAGT	59.769	33.333	0.00	0.00	0.00	4.00
2159	2679	7.496346	AAACTTCATGTAATCCAGTAGAGGA	57.504	36.000	0.00	0.00	43.01	3.71
2179	2699	2.357760	GTGGTGCGCCGGTTAGAA	60.358	61.111	12.58	0.00	37.67	2.10
2219	2739	3.795623	TTCAGTCGGTAGGATTAGTGC	57.204	47.619	0.00	0.00	0.00	4.40
2308	2937	2.351276	GGGCTGGTGTACCCTGTG	59.649	66.667	0.00	0.00	43.36	3.66
2309	2938	2.526046	GGGCTGGTGTACCCTGTGT	61.526	63.158	0.00	0.00	43.36	3.72
2312	2941	0.951558	GCTGGTGTACCCTGTGTTTG	59.048	55.000	0.00	0.00	34.73	2.93
2316	2945	2.504585	TGGTGTACCCTGTGTTTGTACA	59.495	45.455	0.00	0.00	41.71	2.90
2317	2946	3.054582	TGGTGTACCCTGTGTTTGTACAA	60.055	43.478	3.59	3.59	44.45	2.41
2333	2962	7.042992	TGTTTGTACAACTCTAGTGATGTTTCG	60.043	37.037	8.07	0.00	0.00	3.46
2363	2992	3.328535	AACTTGTTTCCCCCATGAGTT	57.671	42.857	0.00	0.00	0.00	3.01
2364	2993	2.597455	ACTTGTTTCCCCCATGAGTTG	58.403	47.619	0.00	0.00	0.00	3.16
2365	2994	2.091333	ACTTGTTTCCCCCATGAGTTGT	60.091	45.455	0.00	0.00	0.00	3.32
2366	2995	2.286365	TGTTTCCCCCATGAGTTGTC	57.714	50.000	0.00	0.00	0.00	3.18
2367	2996	1.203001	TGTTTCCCCCATGAGTTGTCC	60.203	52.381	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	3.487042	CGAGACTACGTCATTGTCCGAAT	60.487	47.826	0.00	0.00	33.95	3.34
257	262	3.619979	CGTGAAGGGCTTGTTCTTCCTAT	60.620	47.826	0.00	0.00	38.76	2.57
324	330	2.764010	TGTGTGCGGAGTAGTATGGATT	59.236	45.455	0.00	0.00	0.00	3.01
424	430	2.968574	TCTCTGGTGAATATCCTCCTGC	59.031	50.000	0.00	0.00	0.00	4.85
484	490	1.234615	TTGCGCCAGTTGTTAGAGGC	61.235	55.000	4.18	0.00	43.61	4.70
514	520	2.649034	GACTTCGGCGAGGTCACA	59.351	61.111	36.99	11.61	38.32	3.58
542	548	0.244721	GTTCCATGGGCTCAGTTTGC	59.755	55.000	13.02	0.00	0.00	3.68
603	609	1.497309	ATGGGGAAGCAGGGACGAAA	61.497	55.000	0.00	0.00	0.00	3.46
621	627	2.049526	TGTCGTTGACAGCGCGAT	60.050	55.556	12.10	0.00	37.67	4.58
622	628	3.028019	GTGTCGTTGACAGCGCGA	61.028	61.111	12.10	1.00	43.57	5.87
628	634	0.884259	CCATGGCTGTGTCGTTGACA	60.884	55.000	0.00	0.00	40.50	3.58
633	639	4.314440	ACGCCATGGCTGTGTCGT	62.314	61.111	33.07	19.90	39.32	4.34
654	660	3.475494	ATGGCCCACGTGCGGATA	61.475	61.111	22.51	12.52	0.00	2.59
682	688	3.245016	ACATGGTTCTTGAGGATGAAGCA	60.245	43.478	9.46	9.46	0.00	3.91
726	732	1.612199	GGGTTGATGGCGTGGAAGTTA	60.612	52.381	0.00	0.00	0.00	2.24
805	811	4.572571	GGGGTGGTGGCACGTGAA	62.573	66.667	22.23	2.99	0.00	3.18
811	817	2.075355	AAATCTTCGGGGTGGTGGCA	62.075	55.000	0.00	0.00	0.00	4.92
822	828	3.553511	CGAAGTGGATGAGGAAATCTTCG	59.446	47.826	9.33	9.33	43.56	3.79
990	997	1.497309	GGGACCACATGTCAAGGGGA	61.497	60.000	2.67	0.00	46.38	4.81
996	1003	1.200760	CCTCCAGGGACCACATGTCA	61.201	60.000	0.00	0.00	46.38	3.58
1035	1042	2.002586	CGGTCGATGATGCAGAACTTT	58.997	47.619	0.00	0.00	0.00	2.66
1059	1066	1.367471	CTCGAAGGTGTGGCTGTCA	59.633	57.895	0.00	0.00	0.00	3.58
1081	1088	2.586635	GAACGTGCGTGTGTCCCA	60.587	61.111	0.00	0.00	0.00	4.37
1102	1109	4.974721	CCACACCCACACCCAGGC	62.975	72.222	0.00	0.00	0.00	4.85
1103	1110	2.762554	TTCCACACCCACACCCAGG	61.763	63.158	0.00	0.00	0.00	4.45
1170	1177	1.008424	CTCCATCATCCGTCCGACG	60.008	63.158	14.15	14.15	42.11	5.12
1176	1183	1.141657	CCCAACATCTCCATCATCCGT	59.858	52.381	0.00	0.00	0.00	4.69
1398	1914	1.238439	AACAAGCCACATGGTCTTCG	58.762	50.000	0.00	2.66	37.57	3.79
1406	1922	3.540314	TTGCAAAGAAACAAGCCACAT	57.460	38.095	0.00	0.00	0.00	3.21
1434	1950	1.923395	GGGTGGGGTGATGGAGTCA	60.923	63.158	0.00	0.00	0.00	3.41
1449	1965	3.552384	TTGTTCGTCCAGCGGGGT	61.552	61.111	2.05	0.00	41.72	4.95
1462	1978	3.283751	TCACCTCGAAAACCATGTTGTT	58.716	40.909	0.00	0.00	0.00	2.83
1466	1982	1.871039	CGTTCACCTCGAAAACCATGT	59.129	47.619	0.00	0.00	34.69	3.21
1527	2044	1.849039	AGCTTCTCCTATGGCATTGGT	59.151	47.619	24.02	4.50	0.00	3.67
1683	2200	2.043752	TACGCGATGACCAGGGGA	60.044	61.111	15.93	0.00	0.00	4.81
1694	2211	3.896133	GGCCGTCCATCTACGCGA	61.896	66.667	15.93	0.00	41.51	5.87
1714	2231	0.964358	GAGCTGCACTGCCCAATCTT	60.964	55.000	1.02	0.00	0.00	2.40
1743	2263	1.268032	ACGACGTTCTGCTTGCTTTTG	60.268	47.619	0.00	0.00	0.00	2.44
1763	2283	3.068691	CGGAGAAGAGGGCACGGA	61.069	66.667	0.00	0.00	0.00	4.69
1819	2339	2.976840	GCTTTGCAACATCCGGCGA	61.977	57.895	9.30	0.00	0.00	5.54
1832	2352	2.259511	GCGGCTTCTTGGGCTTTG	59.740	61.111	0.00	0.00	0.00	2.77
1833	2353	2.116125	AGCGGCTTCTTGGGCTTT	59.884	55.556	0.00	0.00	30.04	3.51
1881	2401	1.333791	GGGACGTTGTTCTTTGCTTCG	60.334	52.381	0.00	0.00	0.00	3.79
1911	2431	0.173481	CGATTCTCAGGGAAGCACGA	59.827	55.000	0.00	0.00	40.02	4.35
1976	2496	1.604593	ACAAGCTTCTTGGCCGCAT	60.605	52.632	10.80	0.00	0.00	4.73
1999	2519	1.072331	GGAGAGTGGTTCTTCAAGGCA	59.928	52.381	0.00	0.00	35.87	4.75
2001	2521	1.699634	TGGGAGAGTGGTTCTTCAAGG	59.300	52.381	0.00	0.00	35.87	3.61
2002	2522	2.289945	CCTGGGAGAGTGGTTCTTCAAG	60.290	54.545	0.00	0.00	35.87	3.02
2010	2530	1.079438	GTCCTCCTGGGAGAGTGGT	59.921	63.158	17.36	0.00	46.10	4.16
2046	2566	2.560981	TGCGTCATTAAGGTGAGTGAGA	59.439	45.455	0.00	0.00	0.00	3.27
2059	2579	3.479370	GCGAAGAGCTGCGTCATT	58.521	55.556	0.00	0.00	44.04	2.57
2112	2632	3.273434	GCTAACATGGAGCACTCATTCA	58.727	45.455	15.00	0.00	39.84	2.57
2153	2673	3.755628	GCGCACCACCGTCCTCTA	61.756	66.667	0.30	0.00	0.00	2.43
2179	2699	8.697507	ACTGAAAAGAGAAACACATTCCTAAT	57.302	30.769	0.00	0.00	38.94	1.73
2219	2739	1.939974	TGCCTAAATGCTGCGACTAG	58.060	50.000	0.00	0.00	0.00	2.57
2308	2937	7.281484	CGAAACATCACTAGAGTTGTACAAAC	58.719	38.462	10.51	7.84	0.00	2.93
2309	2938	6.073980	GCGAAACATCACTAGAGTTGTACAAA	60.074	38.462	10.51	0.00	0.00	2.83
2312	2941	5.061064	CAGCGAAACATCACTAGAGTTGTAC	59.939	44.000	0.00	0.00	0.00	2.90
2316	2945	2.996621	GCAGCGAAACATCACTAGAGTT	59.003	45.455	0.00	0.00	0.00	3.01
2317	2946	2.232452	AGCAGCGAAACATCACTAGAGT	59.768	45.455	0.00	0.00	0.00	3.24
2333	2962	1.211743	GAAACAAGTTTGCCAGCAGC	58.788	50.000	2.45	0.00	44.14	5.25

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.