Multiple sequence alignment - TraesCS6B01G215200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G215200 chr6B 100.000 4952 0 0 1 4952 291068646 291063695 0.000000e+00 9145.0
1 TraesCS6B01G215200 chr6D 96.317 1928 41 11 561 2470 161359506 161357591 0.000000e+00 3140.0
2 TraesCS6B01G215200 chr6D 90.534 1067 61 14 2549 3586 161357591 161356536 0.000000e+00 1375.0
3 TraesCS6B01G215200 chr6D 92.673 737 37 11 3580 4309 161356370 161355644 0.000000e+00 1046.0
4 TraesCS6B01G215200 chr6D 89.242 660 58 7 4304 4952 161355579 161354922 0.000000e+00 813.0
5 TraesCS6B01G215200 chr6D 82.651 415 31 18 178 564 161360329 161359928 3.700000e-86 329.0
6 TraesCS6B01G215200 chr6D 93.820 178 11 0 1 178 251186451 251186274 8.170000e-68 268.0
7 TraesCS6B01G215200 chr6D 86.408 103 12 2 196 297 409090202 409090303 1.460000e-20 111.0
8 TraesCS6B01G215200 chr6D 83.838 99 14 2 298 395 424902080 424901983 5.280000e-15 93.5
9 TraesCS6B01G215200 chr6D 83.838 99 14 2 298 395 424915154 424915057 5.280000e-15 93.5
10 TraesCS6B01G215200 chr6D 79.310 116 21 3 298 411 105471290 105471404 1.480000e-10 78.7
11 TraesCS6B01G215200 chr6A 95.729 1920 40 10 561 2470 220742305 220740418 0.000000e+00 3053.0
12 TraesCS6B01G215200 chr6A 89.929 844 44 14 3504 4309 220738356 220737516 0.000000e+00 1050.0
13 TraesCS6B01G215200 chr6A 95.131 534 22 2 2549 3079 220740418 220739886 0.000000e+00 839.0
14 TraesCS6B01G215200 chr6A 89.935 616 57 5 4342 4952 220717707 220717092 0.000000e+00 789.0
15 TraesCS6B01G215200 chr6A 87.905 463 32 12 3072 3511 220739859 220739398 1.580000e-144 523.0
16 TraesCS6B01G215200 chr6A 86.076 395 37 14 178 557 220743795 220743404 4.610000e-110 409.0
17 TraesCS6B01G215200 chr6A 82.911 158 22 4 336 490 255133809 255133964 2.400000e-28 137.0
18 TraesCS6B01G215200 chr1D 94.382 178 10 0 1 178 58612863 58612686 1.760000e-69 274.0
19 TraesCS6B01G215200 chr1D 85.714 112 14 2 187 297 191253168 191253058 3.130000e-22 117.0
20 TraesCS6B01G215200 chr7D 93.820 178 11 0 1 178 451780304 451780127 8.170000e-68 268.0
21 TraesCS6B01G215200 chr7D 93.785 177 11 0 1 177 590192435 590192611 2.940000e-67 267.0
22 TraesCS6B01G215200 chr7D 85.185 108 13 3 191 297 149683606 149683501 1.880000e-19 108.0
23 TraesCS6B01G215200 chr3D 93.820 178 11 0 1 178 609184534 609184357 8.170000e-68 268.0
24 TraesCS6B01G215200 chr3D 82.828 99 15 2 298 395 322372780 322372877 2.460000e-13 87.9
25 TraesCS6B01G215200 chr2D 93.820 178 11 0 1 178 283283237 283283060 8.170000e-68 268.0
26 TraesCS6B01G215200 chr2D 78.676 136 24 5 302 433 296275862 296275728 8.830000e-13 86.1
27 TraesCS6B01G215200 chr1B 93.820 178 11 0 1 178 196884628 196884451 8.170000e-68 268.0
28 TraesCS6B01G215200 chr1B 83.036 112 17 2 187 297 153369857 153369747 3.150000e-17 100.0
29 TraesCS6B01G215200 chr1B 79.433 141 29 0 336 476 625213995 625213855 3.150000e-17 100.0
30 TraesCS6B01G215200 chr5A 93.220 177 12 0 1 177 171249256 171249432 1.370000e-65 261.0
31 TraesCS6B01G215200 chr5A 90.355 197 17 2 1 195 285661608 285661804 1.770000e-64 257.0
32 TraesCS6B01G215200 chr5A 76.596 141 29 4 301 438 611225485 611225624 1.910000e-09 75.0
33 TraesCS6B01G215200 chr7A 80.203 197 31 7 299 490 602176967 602177160 1.860000e-29 141.0
34 TraesCS6B01G215200 chr5D 84.028 144 21 2 348 490 519379833 519379691 2.400000e-28 137.0
35 TraesCS6B01G215200 chr5D 85.217 115 13 4 195 307 552221506 552221394 1.130000e-21 115.0
36 TraesCS6B01G215200 chr7B 86.555 119 16 0 179 297 325963291 325963409 1.120000e-26 132.0
37 TraesCS6B01G215200 chr5B 83.871 124 16 4 187 309 503864461 503864341 1.130000e-21 115.0
38 TraesCS6B01G215200 chr5B 92.958 71 3 2 187 256 465108990 465109059 8.770000e-18 102.0
39 TraesCS6B01G215200 chr2B 80.851 141 22 4 338 476 458096297 458096434 6.780000e-19 106.0
40 TraesCS6B01G215200 chr4D 82.828 99 15 2 298 395 217380096 217380193 2.460000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G215200 chr6B 291063695 291068646 4951 True 9145.0 9145 100.0000 1 4952 1 chr6B.!!$R1 4951
1 TraesCS6B01G215200 chr6D 161354922 161360329 5407 True 1340.6 3140 90.2834 178 4952 5 chr6D.!!$R4 4774
2 TraesCS6B01G215200 chr6A 220737516 220743795 6279 True 1174.8 3053 90.9540 178 4309 5 chr6A.!!$R2 4131
3 TraesCS6B01G215200 chr6A 220717092 220717707 615 True 789.0 789 89.9350 4342 4952 1 chr6A.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.251341 ACCGCTTGCCATTTCCTTCT 60.251 50.000 0.00 0.00 0.00 2.85 F
127 128 0.313043 TCTCGTTGGGTTCGACACTC 59.687 55.000 0.00 0.00 33.71 3.51 F
130 131 0.599558 CGTTGGGTTCGACACTCCTA 59.400 55.000 0.00 0.00 0.00 2.94 F
132 133 1.617357 GTTGGGTTCGACACTCCTACT 59.383 52.381 0.00 0.00 0.00 2.57 F
214 215 1.749033 GATACTGGCGAAGGGGGAG 59.251 63.158 0.00 0.00 0.00 4.30 F
621 1897 2.035626 AACCATCCAGCAACCCCG 59.964 61.111 0.00 0.00 0.00 5.73 F
2426 3711 0.030369 GGATCGAAGGTACGTGCGAT 59.970 55.000 27.12 27.12 45.07 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 2292 1.004560 CTGGCCAAGCACGAAGAGA 60.005 57.895 7.01 0.00 0.00 3.10 R
1192 2476 1.372087 GACCCATCCGAAGCAGCAAG 61.372 60.000 0.00 0.00 0.00 4.01 R
1522 2806 1.936656 GCATGTGACACTGAAGCGAGA 60.937 52.381 7.20 0.00 0.00 4.04 R
1534 2818 2.343246 CGTTCAAATGCATGCATGTGAC 59.657 45.455 40.66 32.80 46.72 3.67 R
1536 2820 2.343246 GTCGTTCAAATGCATGCATGTG 59.657 45.455 35.62 35.62 41.70 3.21 R
2504 3794 0.033090 TCAAATGCGCAATGTGCCAA 59.967 45.000 17.11 0.00 41.12 4.52 R
4221 6813 0.247419 GATGTGACTGCATGAACGCG 60.247 55.000 3.53 3.53 33.35 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.892310 ACTTGTTACCCGTTACGAATTATC 57.108 37.500 6.24 0.00 0.00 1.75
25 26 6.633856 ACTTGTTACCCGTTACGAATTATCT 58.366 36.000 6.24 0.00 0.00 1.98
26 27 7.099120 ACTTGTTACCCGTTACGAATTATCTT 58.901 34.615 6.24 0.00 0.00 2.40
27 28 8.250332 ACTTGTTACCCGTTACGAATTATCTTA 58.750 33.333 6.24 0.00 0.00 2.10
28 29 9.252962 CTTGTTACCCGTTACGAATTATCTTAT 57.747 33.333 6.24 0.00 0.00 1.73
29 30 8.801715 TGTTACCCGTTACGAATTATCTTATC 57.198 34.615 6.24 0.00 0.00 1.75
30 31 8.412456 TGTTACCCGTTACGAATTATCTTATCA 58.588 33.333 6.24 0.00 0.00 2.15
31 32 8.694394 GTTACCCGTTACGAATTATCTTATCAC 58.306 37.037 6.24 0.00 0.00 3.06
32 33 6.808829 ACCCGTTACGAATTATCTTATCACA 58.191 36.000 6.24 0.00 0.00 3.58
33 34 6.698766 ACCCGTTACGAATTATCTTATCACAC 59.301 38.462 6.24 0.00 0.00 3.82
34 35 6.698329 CCCGTTACGAATTATCTTATCACACA 59.302 38.462 6.24 0.00 0.00 3.72
35 36 7.223193 CCCGTTACGAATTATCTTATCACACAA 59.777 37.037 6.24 0.00 0.00 3.33
36 37 8.054236 CCGTTACGAATTATCTTATCACACAAC 58.946 37.037 6.24 0.00 0.00 3.32
37 38 8.804743 CGTTACGAATTATCTTATCACACAACT 58.195 33.333 0.00 0.00 0.00 3.16
49 50 9.863845 TCTTATCACACAACTATTTGTTATCGA 57.136 29.630 0.00 0.00 43.89 3.59
65 66 7.912949 TGTTATCGATAATTTCAATGCTTGC 57.087 32.000 20.21 4.24 0.00 4.01
66 67 7.479150 TGTTATCGATAATTTCAATGCTTGCA 58.521 30.769 20.21 6.65 0.00 4.08
67 68 7.972832 TGTTATCGATAATTTCAATGCTTGCAA 59.027 29.630 20.21 0.00 0.00 4.08
68 69 8.806634 GTTATCGATAATTTCAATGCTTGCAAA 58.193 29.630 20.21 0.00 0.00 3.68
72 73 7.760794 TCGATAATTTCAATGCTTGCAAAGAAT 59.239 29.630 0.00 0.00 46.84 2.40
73 74 9.022915 CGATAATTTCAATGCTTGCAAAGAATA 57.977 29.630 0.00 5.57 42.97 1.75
75 76 6.973229 ATTTCAATGCTTGCAAAGAATACC 57.027 33.333 0.00 0.00 42.97 2.73
76 77 5.726980 TTCAATGCTTGCAAAGAATACCT 57.273 34.783 0.00 0.00 42.97 3.08
77 78 5.726980 TCAATGCTTGCAAAGAATACCTT 57.273 34.783 0.00 0.00 42.97 3.50
78 79 5.472148 TCAATGCTTGCAAAGAATACCTTG 58.528 37.500 0.00 0.00 42.97 3.61
79 80 4.092383 CAATGCTTGCAAAGAATACCTTGC 59.908 41.667 0.00 0.00 42.97 4.01
80 81 4.020839 AATGCTTGCAAAGAATACCTTGCT 60.021 37.500 0.00 0.00 42.97 3.91
81 82 5.185635 AATGCTTGCAAAGAATACCTTGCTA 59.814 36.000 0.00 0.30 42.97 3.49
82 83 6.295236 AATGCTTGCAAAGAATACCTTGCTAA 60.295 34.615 0.00 1.43 42.97 3.09
83 84 7.740567 AATGCTTGCAAAGAATACCTTGCTAAA 60.741 33.333 0.00 0.00 42.97 1.85
86 87 7.707774 TTGCAAAGAATACCTTGCTAAAAAC 57.292 32.000 0.00 0.00 34.79 2.43
87 88 6.220201 TGCAAAGAATACCTTGCTAAAAACC 58.780 36.000 8.13 0.00 34.79 3.27
88 89 5.344933 GCAAAGAATACCTTGCTAAAAACCG 59.655 40.000 0.00 0.00 34.79 4.44
89 90 4.696899 AGAATACCTTGCTAAAAACCGC 57.303 40.909 0.00 0.00 0.00 5.68
90 91 4.332828 AGAATACCTTGCTAAAAACCGCT 58.667 39.130 0.00 0.00 0.00 5.52
91 92 4.765339 AGAATACCTTGCTAAAAACCGCTT 59.235 37.500 0.00 0.00 0.00 4.68
92 93 2.793278 ACCTTGCTAAAAACCGCTTG 57.207 45.000 0.00 0.00 0.00 4.01
93 94 1.269569 ACCTTGCTAAAAACCGCTTGC 60.270 47.619 0.00 0.00 0.00 4.01
94 95 1.418373 CTTGCTAAAAACCGCTTGCC 58.582 50.000 0.00 0.00 0.00 4.52
95 96 0.747255 TTGCTAAAAACCGCTTGCCA 59.253 45.000 0.00 0.00 0.00 4.92
96 97 0.965439 TGCTAAAAACCGCTTGCCAT 59.035 45.000 0.00 0.00 0.00 4.40
97 98 1.342819 TGCTAAAAACCGCTTGCCATT 59.657 42.857 0.00 0.00 0.00 3.16
98 99 2.224161 TGCTAAAAACCGCTTGCCATTT 60.224 40.909 0.00 0.00 0.00 2.32
99 100 2.411748 GCTAAAAACCGCTTGCCATTTC 59.588 45.455 0.00 0.00 0.00 2.17
100 101 1.877637 AAAAACCGCTTGCCATTTCC 58.122 45.000 0.00 0.00 0.00 3.13
101 102 1.047801 AAAACCGCTTGCCATTTCCT 58.952 45.000 0.00 0.00 0.00 3.36
102 103 1.047801 AAACCGCTTGCCATTTCCTT 58.952 45.000 0.00 0.00 0.00 3.36
103 104 0.603065 AACCGCTTGCCATTTCCTTC 59.397 50.000 0.00 0.00 0.00 3.46
104 105 0.251341 ACCGCTTGCCATTTCCTTCT 60.251 50.000 0.00 0.00 0.00 2.85
105 106 1.004277 ACCGCTTGCCATTTCCTTCTA 59.996 47.619 0.00 0.00 0.00 2.10
106 107 1.401905 CCGCTTGCCATTTCCTTCTAC 59.598 52.381 0.00 0.00 0.00 2.59
107 108 2.359900 CGCTTGCCATTTCCTTCTACT 58.640 47.619 0.00 0.00 0.00 2.57
108 109 2.749621 CGCTTGCCATTTCCTTCTACTT 59.250 45.455 0.00 0.00 0.00 2.24
109 110 3.181506 CGCTTGCCATTTCCTTCTACTTC 60.182 47.826 0.00 0.00 0.00 3.01
110 111 4.013050 GCTTGCCATTTCCTTCTACTTCT 58.987 43.478 0.00 0.00 0.00 2.85
111 112 4.095632 GCTTGCCATTTCCTTCTACTTCTC 59.904 45.833 0.00 0.00 0.00 2.87
112 113 3.861840 TGCCATTTCCTTCTACTTCTCG 58.138 45.455 0.00 0.00 0.00 4.04
113 114 3.260884 TGCCATTTCCTTCTACTTCTCGT 59.739 43.478 0.00 0.00 0.00 4.18
114 115 4.254492 GCCATTTCCTTCTACTTCTCGTT 58.746 43.478 0.00 0.00 0.00 3.85
115 116 4.093556 GCCATTTCCTTCTACTTCTCGTTG 59.906 45.833 0.00 0.00 0.00 4.10
116 117 4.631813 CCATTTCCTTCTACTTCTCGTTGG 59.368 45.833 0.00 0.00 0.00 3.77
117 118 3.955650 TTCCTTCTACTTCTCGTTGGG 57.044 47.619 0.00 0.00 0.00 4.12
118 119 2.885616 TCCTTCTACTTCTCGTTGGGT 58.114 47.619 0.00 0.00 0.00 4.51
119 120 3.236896 TCCTTCTACTTCTCGTTGGGTT 58.763 45.455 0.00 0.00 0.00 4.11
120 121 3.257624 TCCTTCTACTTCTCGTTGGGTTC 59.742 47.826 0.00 0.00 0.00 3.62
121 122 3.243336 CTTCTACTTCTCGTTGGGTTCG 58.757 50.000 0.00 0.00 0.00 3.95
122 123 2.507484 TCTACTTCTCGTTGGGTTCGA 58.493 47.619 0.00 0.00 35.96 3.71
123 124 2.227388 TCTACTTCTCGTTGGGTTCGAC 59.773 50.000 0.00 0.00 33.71 4.20
124 125 0.748450 ACTTCTCGTTGGGTTCGACA 59.252 50.000 0.00 0.00 33.71 4.35
125 126 1.137513 CTTCTCGTTGGGTTCGACAC 58.862 55.000 0.00 0.00 33.71 3.67
126 127 0.748450 TTCTCGTTGGGTTCGACACT 59.252 50.000 0.00 0.00 33.71 3.55
127 128 0.313043 TCTCGTTGGGTTCGACACTC 59.687 55.000 0.00 0.00 33.71 3.51
128 129 0.666577 CTCGTTGGGTTCGACACTCC 60.667 60.000 0.00 0.00 33.71 3.85
129 130 1.111116 TCGTTGGGTTCGACACTCCT 61.111 55.000 0.00 0.00 32.30 3.69
130 131 0.599558 CGTTGGGTTCGACACTCCTA 59.400 55.000 0.00 0.00 0.00 2.94
131 132 1.668047 CGTTGGGTTCGACACTCCTAC 60.668 57.143 0.00 0.00 0.00 3.18
132 133 1.617357 GTTGGGTTCGACACTCCTACT 59.383 52.381 0.00 0.00 0.00 2.57
133 134 2.005370 TGGGTTCGACACTCCTACTT 57.995 50.000 0.00 0.00 0.00 2.24
134 135 3.159213 TGGGTTCGACACTCCTACTTA 57.841 47.619 0.00 0.00 0.00 2.24
135 136 3.705051 TGGGTTCGACACTCCTACTTAT 58.295 45.455 0.00 0.00 0.00 1.73
136 137 3.698040 TGGGTTCGACACTCCTACTTATC 59.302 47.826 0.00 0.00 0.00 1.75
137 138 3.243002 GGGTTCGACACTCCTACTTATCG 60.243 52.174 0.00 0.00 0.00 2.92
138 139 3.624861 GGTTCGACACTCCTACTTATCGA 59.375 47.826 0.00 0.00 36.85 3.59
139 140 4.095483 GGTTCGACACTCCTACTTATCGAA 59.905 45.833 2.99 2.99 43.90 3.71
140 141 5.392380 GGTTCGACACTCCTACTTATCGAAA 60.392 44.000 8.30 0.00 46.48 3.46
141 142 5.481200 TCGACACTCCTACTTATCGAAAG 57.519 43.478 0.00 0.00 35.80 2.62
142 143 4.334759 TCGACACTCCTACTTATCGAAAGG 59.665 45.833 10.65 4.28 35.80 3.11
143 144 4.334759 CGACACTCCTACTTATCGAAAGGA 59.665 45.833 10.65 7.59 36.69 3.36
144 145 5.579564 ACACTCCTACTTATCGAAAGGAC 57.420 43.478 10.65 0.00 34.45 3.85
145 146 5.262804 ACACTCCTACTTATCGAAAGGACT 58.737 41.667 10.65 0.00 34.45 3.85
146 147 6.421485 ACACTCCTACTTATCGAAAGGACTA 58.579 40.000 10.65 0.00 34.45 2.59
147 148 6.888632 ACACTCCTACTTATCGAAAGGACTAA 59.111 38.462 10.65 0.00 34.45 2.24
148 149 7.067251 ACACTCCTACTTATCGAAAGGACTAAG 59.933 40.741 10.65 6.13 34.45 2.18
149 150 7.282675 CACTCCTACTTATCGAAAGGACTAAGA 59.717 40.741 7.94 0.00 34.45 2.10
150 151 8.000127 ACTCCTACTTATCGAAAGGACTAAGAT 59.000 37.037 7.94 0.00 34.45 2.40
151 152 9.504708 CTCCTACTTATCGAAAGGACTAAGATA 57.495 37.037 7.94 0.00 34.45 1.98
152 153 9.504708 TCCTACTTATCGAAAGGACTAAGATAG 57.495 37.037 7.94 6.23 33.18 2.08
153 154 9.504708 CCTACTTATCGAAAGGACTAAGATAGA 57.495 37.037 7.94 0.00 0.00 1.98
156 157 9.016438 ACTTATCGAAAGGACTAAGATAGATCC 57.984 37.037 7.94 0.00 0.00 3.36
157 158 6.844097 ATCGAAAGGACTAAGATAGATCCC 57.156 41.667 0.00 0.00 30.89 3.85
158 159 5.078256 TCGAAAGGACTAAGATAGATCCCC 58.922 45.833 0.00 0.00 30.89 4.81
159 160 5.081032 CGAAAGGACTAAGATAGATCCCCT 58.919 45.833 0.00 0.00 30.89 4.79
160 161 6.045224 TCGAAAGGACTAAGATAGATCCCCTA 59.955 42.308 0.00 0.00 30.89 3.53
161 162 6.893005 CGAAAGGACTAAGATAGATCCCCTAT 59.107 42.308 0.00 0.00 40.66 2.57
162 163 8.053963 CGAAAGGACTAAGATAGATCCCCTATA 58.946 40.741 0.00 0.00 38.17 1.31
163 164 9.192642 GAAAGGACTAAGATAGATCCCCTATAC 57.807 40.741 0.00 0.00 38.17 1.47
164 165 8.485162 AAGGACTAAGATAGATCCCCTATACT 57.515 38.462 0.00 0.00 38.17 2.12
165 166 8.485162 AGGACTAAGATAGATCCCCTATACTT 57.515 38.462 0.00 0.00 38.17 2.24
166 167 9.591220 AGGACTAAGATAGATCCCCTATACTTA 57.409 37.037 0.00 0.00 38.17 2.24
170 171 9.594936 CTAAGATAGATCCCCTATACTTATGGG 57.405 40.741 0.00 0.00 38.17 4.00
171 172 7.562057 AGATAGATCCCCTATACTTATGGGT 57.438 40.000 0.00 0.00 38.17 4.51
172 173 7.597327 AGATAGATCCCCTATACTTATGGGTC 58.403 42.308 0.00 0.00 38.17 4.46
173 174 5.633473 AGATCCCCTATACTTATGGGTCA 57.367 43.478 0.00 0.00 39.31 4.02
174 175 6.185677 AGATCCCCTATACTTATGGGTCAT 57.814 41.667 0.00 0.00 39.31 3.06
175 176 6.206042 AGATCCCCTATACTTATGGGTCATC 58.794 44.000 0.00 0.00 39.31 2.92
176 177 5.363124 TCCCCTATACTTATGGGTCATCA 57.637 43.478 0.00 0.00 39.31 3.07
193 194 7.093596 TGGGTCATCAATCTATCATAGTGCTAG 60.094 40.741 0.00 0.00 0.00 3.42
201 202 8.888716 CAATCTATCATAGTGCTAGACGATACT 58.111 37.037 0.00 0.00 29.20 2.12
214 215 1.749033 GATACTGGCGAAGGGGGAG 59.251 63.158 0.00 0.00 0.00 4.30
241 242 3.260380 TCCGGTAATGTTTTCCCGAAGTA 59.740 43.478 0.00 0.00 43.01 2.24
314 339 4.891168 TGCTAGAGTGTATTGGGATTCGTA 59.109 41.667 0.00 0.00 0.00 3.43
326 351 4.571919 TGGGATTCGTATCGTTTTTCTGT 58.428 39.130 0.00 0.00 0.00 3.41
327 352 4.998672 TGGGATTCGTATCGTTTTTCTGTT 59.001 37.500 0.00 0.00 0.00 3.16
328 353 6.164876 TGGGATTCGTATCGTTTTTCTGTTA 58.835 36.000 0.00 0.00 0.00 2.41
329 354 6.311935 TGGGATTCGTATCGTTTTTCTGTTAG 59.688 38.462 0.00 0.00 0.00 2.34
330 355 6.312180 GGGATTCGTATCGTTTTTCTGTTAGT 59.688 38.462 0.00 0.00 0.00 2.24
331 356 7.148523 GGGATTCGTATCGTTTTTCTGTTAGTT 60.149 37.037 0.00 0.00 0.00 2.24
332 357 8.863049 GGATTCGTATCGTTTTTCTGTTAGTTA 58.137 33.333 0.00 0.00 0.00 2.24
375 400 8.433421 TTCATCTGACTTACGGATTATTTTCC 57.567 34.615 0.00 0.00 42.08 3.13
469 495 7.675962 TTACTTTTATTACACACGGCAGATT 57.324 32.000 0.00 0.00 0.00 2.40
567 1840 3.572661 AACTAACTAGGGGTGGGAGAA 57.427 47.619 0.00 0.00 0.00 2.87
621 1897 2.035626 AACCATCCAGCAACCCCG 59.964 61.111 0.00 0.00 0.00 5.73
860 2141 2.759560 ATTTGCATCGCCACCCCC 60.760 61.111 0.00 0.00 0.00 5.40
982 2263 3.433319 GCGGTGGCGATCTCTAGA 58.567 61.111 0.00 0.00 0.00 2.43
1011 2292 3.495100 GCTTCGGGAATATGATGGACACT 60.495 47.826 0.00 0.00 0.00 3.55
1192 2476 5.290158 TGCGTCCTCGATTTCAATTAGTTAC 59.710 40.000 0.00 0.00 39.71 2.50
1513 2797 4.725790 GCATTAAGGTTTGCCTGATTCT 57.274 40.909 0.00 0.00 46.33 2.40
1515 2799 4.400567 GCATTAAGGTTTGCCTGATTCTCT 59.599 41.667 0.00 0.00 46.33 3.10
1516 2800 5.590259 GCATTAAGGTTTGCCTGATTCTCTA 59.410 40.000 0.00 0.00 46.33 2.43
1517 2801 6.095440 GCATTAAGGTTTGCCTGATTCTCTAA 59.905 38.462 0.00 0.00 46.33 2.10
1518 2802 7.201857 GCATTAAGGTTTGCCTGATTCTCTAAT 60.202 37.037 0.00 0.00 46.33 1.73
1519 2803 8.689972 CATTAAGGTTTGCCTGATTCTCTAATT 58.310 33.333 0.00 0.00 46.33 1.40
1520 2804 9.920946 ATTAAGGTTTGCCTGATTCTCTAATTA 57.079 29.630 0.00 0.00 46.33 1.40
1521 2805 9.747898 TTAAGGTTTGCCTGATTCTCTAATTAA 57.252 29.630 0.00 0.00 46.33 1.40
1522 2806 8.829373 AAGGTTTGCCTGATTCTCTAATTAAT 57.171 30.769 0.00 0.00 46.33 1.40
1530 2814 7.148656 GCCTGATTCTCTAATTAATCTCGCTTC 60.149 40.741 0.00 0.00 34.00 3.86
1534 2818 7.993821 TTCTCTAATTAATCTCGCTTCAGTG 57.006 36.000 0.00 0.00 0.00 3.66
1536 2820 7.197017 TCTCTAATTAATCTCGCTTCAGTGTC 58.803 38.462 0.00 0.00 0.00 3.67
1635 2920 1.037579 AGATCGAGGTCGGCATGTCA 61.038 55.000 0.00 0.00 40.29 3.58
1665 2950 1.003580 GGACAGATGAACCTTCAGGCA 59.996 52.381 0.00 0.00 41.08 4.75
1671 2956 1.075659 GAACCTTCAGGCAGGCCTT 59.924 57.895 10.79 0.00 45.70 4.35
1695 2980 5.366768 TGGTCAGATATTCTCGGAGGATTTT 59.633 40.000 3.67 0.00 0.00 1.82
2028 3313 4.144727 TCCGCCTCCTCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
2412 3697 2.419198 CTGCTTCCTCCCGGATCG 59.581 66.667 0.73 0.00 39.58 3.69
2423 3708 1.588139 CCGGATCGAAGGTACGTGC 60.588 63.158 0.00 0.00 34.70 5.34
2424 3709 1.937846 CGGATCGAAGGTACGTGCG 60.938 63.158 9.73 9.73 34.70 5.34
2425 3710 1.430632 GGATCGAAGGTACGTGCGA 59.569 57.895 20.17 20.17 37.17 5.10
2426 3711 0.030369 GGATCGAAGGTACGTGCGAT 59.970 55.000 27.12 27.12 45.07 4.58
2427 3712 1.121240 GATCGAAGGTACGTGCGATG 58.879 55.000 30.70 0.00 42.78 3.84
2429 3714 0.179181 TCGAAGGTACGTGCGATGAC 60.179 55.000 14.51 0.00 34.70 3.06
2430 3715 0.455464 CGAAGGTACGTGCGATGACA 60.455 55.000 10.48 0.00 0.00 3.58
2431 3716 1.797713 CGAAGGTACGTGCGATGACAT 60.798 52.381 10.48 0.00 0.00 3.06
2433 3718 2.776312 AGGTACGTGCGATGACATAG 57.224 50.000 0.00 0.00 0.00 2.23
2434 3719 2.294979 AGGTACGTGCGATGACATAGA 58.705 47.619 0.00 0.00 0.00 1.98
2435 3720 2.885266 AGGTACGTGCGATGACATAGAT 59.115 45.455 0.00 0.00 0.00 1.98
2510 3800 5.454736 GCTTTTGCATAGTTAATTGGCAC 57.545 39.130 0.00 0.00 46.58 5.01
2511 3801 4.928615 GCTTTTGCATAGTTAATTGGCACA 59.071 37.500 0.00 0.00 46.58 4.57
2512 3802 5.581874 GCTTTTGCATAGTTAATTGGCACAT 59.418 36.000 0.00 0.00 46.58 3.21
2513 3803 6.092533 GCTTTTGCATAGTTAATTGGCACATT 59.907 34.615 0.00 0.00 46.58 2.71
2514 3804 6.964741 TTTGCATAGTTAATTGGCACATTG 57.035 33.333 0.00 0.00 39.30 2.82
2515 3805 4.431809 TGCATAGTTAATTGGCACATTGC 58.568 39.130 0.00 0.00 44.08 3.56
2516 3806 3.486841 GCATAGTTAATTGGCACATTGCG 59.513 43.478 0.00 0.00 46.21 4.85
2517 3807 1.994916 AGTTAATTGGCACATTGCGC 58.005 45.000 0.00 0.00 46.21 6.09
2518 3808 1.271934 AGTTAATTGGCACATTGCGCA 59.728 42.857 5.66 5.66 46.21 6.09
2519 3809 2.094078 AGTTAATTGGCACATTGCGCAT 60.094 40.909 12.75 0.00 46.21 4.73
2520 3810 2.669300 TAATTGGCACATTGCGCATT 57.331 40.000 12.75 4.45 46.21 3.56
2521 3811 1.810959 AATTGGCACATTGCGCATTT 58.189 40.000 12.75 0.00 46.21 2.32
2522 3812 1.080298 ATTGGCACATTGCGCATTTG 58.920 45.000 12.75 15.28 46.21 2.32
2523 3813 0.033090 TTGGCACATTGCGCATTTGA 59.967 45.000 23.04 4.90 46.21 2.69
2524 3814 0.666880 TGGCACATTGCGCATTTGAC 60.667 50.000 23.04 17.42 46.21 3.18
2525 3815 0.388907 GGCACATTGCGCATTTGACT 60.389 50.000 23.04 3.57 46.21 3.41
2526 3816 0.986992 GCACATTGCGCATTTGACTC 59.013 50.000 23.04 10.36 31.71 3.36
2527 3817 1.666599 GCACATTGCGCATTTGACTCA 60.667 47.619 23.04 2.23 31.71 3.41
2535 3825 7.118101 ACATTGCGCATTTGACTCATTAATTTT 59.882 29.630 23.04 0.00 0.00 1.82
2541 3831 9.731519 CGCATTTGACTCATTAATTTTCTTTTC 57.268 29.630 0.00 0.00 0.00 2.29
2652 3942 4.384056 ACATTCTGATAGCCCAGATTTCG 58.616 43.478 0.00 0.00 42.18 3.46
2713 4012 2.513065 GATCCAGCAACACCAACGCG 62.513 60.000 3.53 3.53 0.00 6.01
2739 4038 0.325296 ACGGCAACTCCAGGGATAGA 60.325 55.000 0.00 0.00 34.01 1.98
2746 4045 1.323412 CTCCAGGGATAGACCAGACG 58.677 60.000 0.00 0.00 41.20 4.18
2752 4051 1.480954 GGGATAGACCAGACGAAGCAA 59.519 52.381 0.00 0.00 41.20 3.91
2829 4128 3.109547 GGCGCGTCAACATCGTCA 61.110 61.111 5.47 0.00 0.00 4.35
3118 4452 1.019673 TAGGCCGTACACGTGAGATC 58.980 55.000 25.01 8.13 37.74 2.75
3179 4513 1.269831 GCTCCTGAGTATTTCGCCGAT 60.270 52.381 0.00 0.00 0.00 4.18
3212 4560 0.237498 CGAAAACTTGACCGCCTTCC 59.763 55.000 0.00 0.00 0.00 3.46
3214 4562 1.170290 AAAACTTGACCGCCTTCCCG 61.170 55.000 0.00 0.00 0.00 5.14
3233 4581 2.279918 GTGACGTCACGGCCAACT 60.280 61.111 31.03 0.00 37.10 3.16
3235 4583 2.737376 GACGTCACGGCCAACTCC 60.737 66.667 11.55 0.00 0.00 3.85
3242 4590 4.016706 CGGCCAACTCCCGTCCTT 62.017 66.667 2.24 0.00 40.84 3.36
3317 4665 5.564550 AGAAGCTTCATCCGCCATTAATAT 58.435 37.500 27.57 0.00 0.00 1.28
3364 4712 5.004361 TGATCTAAATTTGTTCCCCACCA 57.996 39.130 0.00 0.00 0.00 4.17
3376 4724 4.526262 TGTTCCCCACCACAAGAAAATATG 59.474 41.667 0.00 0.00 0.00 1.78
3415 4763 2.002586 AGTCGTTTCAATCGCCATGAG 58.997 47.619 0.00 0.00 0.00 2.90
3420 4768 3.458872 TCAATCGCCATGAGTGACC 57.541 52.632 0.00 0.00 46.01 4.02
3458 4814 1.838112 TTGCTTGGCCAGAATACCTG 58.162 50.000 5.11 0.00 42.55 4.00
3464 4820 4.746702 GCTTGGCCAGAATACCTGCTAATA 60.747 45.833 5.11 0.00 41.57 0.98
3471 4827 3.255149 AGAATACCTGCTAATACCGTCCG 59.745 47.826 0.00 0.00 0.00 4.79
3479 4835 1.662122 CTAATACCGTCCGCACAAACC 59.338 52.381 0.00 0.00 0.00 3.27
3498 4854 1.817099 GCCCTGTCCAATCTCGCTG 60.817 63.158 0.00 0.00 0.00 5.18
3499 4855 1.817099 CCCTGTCCAATCTCGCTGC 60.817 63.158 0.00 0.00 0.00 5.25
3515 5920 3.938963 TCGCTGCCCTTAAGATTTTACTG 59.061 43.478 3.36 0.00 0.00 2.74
3627 6204 4.274950 GGTTACGAATAATGGTGGACATGG 59.725 45.833 0.00 0.00 40.44 3.66
3633 6210 2.143876 AATGGTGGACATGGCCTAAC 57.856 50.000 21.02 9.62 40.44 2.34
3652 6229 5.180492 CCTAACTCTTGCGTGGAACAAATTA 59.820 40.000 0.00 0.00 44.16 1.40
3681 6258 6.260377 TGTAGTCATATTTGTACGTTCGGAG 58.740 40.000 0.00 0.00 0.00 4.63
3710 6287 5.915812 ATGATTTGTTTTGTAAAACCGCC 57.084 34.783 15.36 5.40 45.82 6.13
3715 6292 2.099427 TGTTTTGTAAAACCGCCCTGAC 59.901 45.455 15.36 0.00 45.82 3.51
3772 6354 4.873827 ACCAATGTAACGCGAGATGTATTT 59.126 37.500 15.93 0.00 0.00 1.40
3774 6356 5.432157 CAATGTAACGCGAGATGTATTTCC 58.568 41.667 15.93 0.00 0.00 3.13
3799 6381 1.251527 CCTCTCTAGCCCACACGTGT 61.252 60.000 17.22 17.22 0.00 4.49
3811 6393 0.581529 ACACGTGTTGCATGAACGAG 59.418 50.000 17.22 14.80 39.64 4.18
3957 6542 1.663702 CGACGAACTTTGACCCGCT 60.664 57.895 0.00 0.00 0.00 5.52
4077 6662 7.420800 CATGGCATTTCTAGATTTCTGTAACC 58.579 38.462 0.00 0.00 0.00 2.85
4092 6677 0.830444 TAACCTGTGCTCGTGGAGGT 60.830 55.000 4.91 0.00 40.71 3.85
4094 6679 2.262915 CTGTGCTCGTGGAGGTCC 59.737 66.667 0.00 0.00 0.00 4.46
4140 6732 2.701107 GGGAGGACTTTGAGTAACTGC 58.299 52.381 0.00 0.00 0.00 4.40
4221 6813 9.919348 TTAAGAAACACAAAACATAACGTAGAC 57.081 29.630 0.00 0.00 0.00 2.59
4255 6847 5.235831 CAGTCACATCATCTCACGCATAATT 59.764 40.000 0.00 0.00 0.00 1.40
4308 6972 8.188139 CGGTTTCATTGGCTTAAAATGTAGTAT 58.812 33.333 0.00 0.00 36.58 2.12
4337 7001 7.438160 TCATATACAACCAAAGTTATGCGAGAG 59.562 37.037 0.00 0.00 33.27 3.20
4368 7038 3.347958 TCTCAAACCACGCAATGTTTC 57.652 42.857 0.00 0.00 32.60 2.78
4371 7041 2.159366 TCAAACCACGCAATGTTTCGTT 60.159 40.909 0.00 0.00 36.73 3.85
4486 7156 1.277557 CTTCCCTTGTCCCTCACTCTG 59.722 57.143 0.00 0.00 0.00 3.35
4533 7203 4.526970 GATCATATATGCCCCACCGAATT 58.473 43.478 7.92 0.00 0.00 2.17
4558 7228 1.325640 CGCTCGACATCATCAAACCAG 59.674 52.381 0.00 0.00 0.00 4.00
4564 7234 3.430790 CGACATCATCAAACCAGCTCCTA 60.431 47.826 0.00 0.00 0.00 2.94
4572 7242 0.328258 AACCAGCTCCTACCGCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
4611 7281 3.364460 TCAATGTCCCATGGTTACCAG 57.636 47.619 10.74 2.14 36.75 4.00
4612 7282 2.647299 TCAATGTCCCATGGTTACCAGT 59.353 45.455 10.74 0.00 36.75 4.00
4618 7288 1.213296 CCATGGTTACCAGTAGGGCT 58.787 55.000 10.74 0.00 42.05 5.19
4699 7369 5.130477 CCTACTATACCCATTGACACCTTGT 59.870 44.000 0.00 0.00 0.00 3.16
4766 7441 4.060900 ACACACAAGCAACACATAGAGAG 58.939 43.478 0.00 0.00 0.00 3.20
4831 7506 5.710646 AGATGCTACTCCTATCTCAAGGAA 58.289 41.667 0.00 0.00 45.08 3.36
4833 7508 4.610333 TGCTACTCCTATCTCAAGGAACA 58.390 43.478 0.00 0.00 45.08 3.18
4838 7513 5.026121 ACTCCTATCTCAAGGAACACATCA 58.974 41.667 0.00 0.00 45.08 3.07
4909 7584 0.818296 GGTCTACCTGTGCTGACGAT 59.182 55.000 0.00 0.00 0.00 3.73
4936 7611 1.302431 CACATGTCGGCTTCACCCA 60.302 57.895 0.00 0.00 33.26 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.771183 AGATAATTCGTAACGGGTAACAAGTA 58.229 34.615 0.00 0.00 39.74 2.24
1 2 6.633856 AGATAATTCGTAACGGGTAACAAGT 58.366 36.000 0.00 0.00 39.74 3.16
2 3 7.529880 AAGATAATTCGTAACGGGTAACAAG 57.470 36.000 0.00 0.00 39.74 3.16
3 4 9.248291 GATAAGATAATTCGTAACGGGTAACAA 57.752 33.333 0.00 0.00 39.74 2.83
4 5 8.412456 TGATAAGATAATTCGTAACGGGTAACA 58.588 33.333 0.00 0.00 39.74 2.41
5 6 8.694394 GTGATAAGATAATTCGTAACGGGTAAC 58.306 37.037 0.00 0.00 0.00 2.50
6 7 8.412456 TGTGATAAGATAATTCGTAACGGGTAA 58.588 33.333 0.00 0.00 0.00 2.85
7 8 7.862372 GTGTGATAAGATAATTCGTAACGGGTA 59.138 37.037 0.00 0.00 0.00 3.69
8 9 6.698766 GTGTGATAAGATAATTCGTAACGGGT 59.301 38.462 0.00 0.00 0.00 5.28
9 10 6.698329 TGTGTGATAAGATAATTCGTAACGGG 59.302 38.462 0.00 0.00 0.00 5.28
10 11 7.688478 TGTGTGATAAGATAATTCGTAACGG 57.312 36.000 0.00 0.00 0.00 4.44
11 12 8.804743 AGTTGTGTGATAAGATAATTCGTAACG 58.195 33.333 0.00 0.00 0.00 3.18
51 52 7.662669 AAGGTATTCTTTGCAAGCATTGAAATT 59.337 29.630 0.00 3.20 44.63 1.82
52 53 7.118680 CAAGGTATTCTTTGCAAGCATTGAAAT 59.881 33.333 0.00 6.20 44.63 2.17
53 54 6.424509 CAAGGTATTCTTTGCAAGCATTGAAA 59.575 34.615 0.00 0.00 43.28 2.69
54 55 5.927689 CAAGGTATTCTTTGCAAGCATTGAA 59.072 36.000 0.00 10.88 40.51 2.69
55 56 5.472148 CAAGGTATTCTTTGCAAGCATTGA 58.528 37.500 0.00 0.00 40.51 2.57
56 57 5.773239 CAAGGTATTCTTTGCAAGCATTG 57.227 39.130 0.00 0.00 40.84 2.82
65 66 5.344933 GCGGTTTTTAGCAAGGTATTCTTTG 59.655 40.000 0.00 0.00 32.41 2.77
66 67 5.243060 AGCGGTTTTTAGCAAGGTATTCTTT 59.757 36.000 0.00 0.00 32.41 2.52
67 68 4.765339 AGCGGTTTTTAGCAAGGTATTCTT 59.235 37.500 0.00 0.00 35.79 2.52
68 69 4.332828 AGCGGTTTTTAGCAAGGTATTCT 58.667 39.130 0.00 0.00 35.48 2.40
69 70 4.696899 AGCGGTTTTTAGCAAGGTATTC 57.303 40.909 0.00 0.00 35.48 1.75
70 71 4.805219 CAAGCGGTTTTTAGCAAGGTATT 58.195 39.130 0.00 0.00 35.48 1.89
71 72 3.366985 GCAAGCGGTTTTTAGCAAGGTAT 60.367 43.478 0.00 0.00 35.48 2.73
72 73 2.030628 GCAAGCGGTTTTTAGCAAGGTA 60.031 45.455 0.00 0.00 35.48 3.08
73 74 1.269569 GCAAGCGGTTTTTAGCAAGGT 60.270 47.619 0.00 0.00 35.48 3.50
74 75 1.418373 GCAAGCGGTTTTTAGCAAGG 58.582 50.000 0.00 0.00 35.48 3.61
75 76 1.269517 TGGCAAGCGGTTTTTAGCAAG 60.270 47.619 9.23 0.00 35.48 4.01
76 77 0.747255 TGGCAAGCGGTTTTTAGCAA 59.253 45.000 9.23 0.00 35.48 3.91
77 78 0.965439 ATGGCAAGCGGTTTTTAGCA 59.035 45.000 9.23 0.00 35.48 3.49
78 79 2.078849 AATGGCAAGCGGTTTTTAGC 57.921 45.000 0.00 0.00 0.00 3.09
79 80 2.993220 GGAAATGGCAAGCGGTTTTTAG 59.007 45.455 0.00 0.00 0.00 1.85
80 81 2.630580 AGGAAATGGCAAGCGGTTTTTA 59.369 40.909 0.00 0.00 0.00 1.52
81 82 1.416030 AGGAAATGGCAAGCGGTTTTT 59.584 42.857 0.00 0.00 0.00 1.94
82 83 1.047801 AGGAAATGGCAAGCGGTTTT 58.952 45.000 0.00 0.00 0.00 2.43
83 84 1.000843 GAAGGAAATGGCAAGCGGTTT 59.999 47.619 0.00 0.00 0.00 3.27
84 85 0.603065 GAAGGAAATGGCAAGCGGTT 59.397 50.000 0.00 0.00 0.00 4.44
85 86 0.251341 AGAAGGAAATGGCAAGCGGT 60.251 50.000 0.00 0.00 0.00 5.68
86 87 1.401905 GTAGAAGGAAATGGCAAGCGG 59.598 52.381 0.00 0.00 0.00 5.52
87 88 2.359900 AGTAGAAGGAAATGGCAAGCG 58.640 47.619 0.00 0.00 0.00 4.68
88 89 4.013050 AGAAGTAGAAGGAAATGGCAAGC 58.987 43.478 0.00 0.00 0.00 4.01
89 90 4.331168 CGAGAAGTAGAAGGAAATGGCAAG 59.669 45.833 0.00 0.00 0.00 4.01
90 91 4.253685 CGAGAAGTAGAAGGAAATGGCAA 58.746 43.478 0.00 0.00 0.00 4.52
91 92 3.260884 ACGAGAAGTAGAAGGAAATGGCA 59.739 43.478 0.00 0.00 0.00 4.92
92 93 3.863041 ACGAGAAGTAGAAGGAAATGGC 58.137 45.455 0.00 0.00 0.00 4.40
93 94 4.631813 CCAACGAGAAGTAGAAGGAAATGG 59.368 45.833 0.00 0.00 0.00 3.16
94 95 4.631813 CCCAACGAGAAGTAGAAGGAAATG 59.368 45.833 0.00 0.00 0.00 2.32
95 96 4.286291 ACCCAACGAGAAGTAGAAGGAAAT 59.714 41.667 0.00 0.00 0.00 2.17
96 97 3.644738 ACCCAACGAGAAGTAGAAGGAAA 59.355 43.478 0.00 0.00 0.00 3.13
97 98 3.236896 ACCCAACGAGAAGTAGAAGGAA 58.763 45.455 0.00 0.00 0.00 3.36
98 99 2.885616 ACCCAACGAGAAGTAGAAGGA 58.114 47.619 0.00 0.00 0.00 3.36
99 100 3.586892 GAACCCAACGAGAAGTAGAAGG 58.413 50.000 0.00 0.00 0.00 3.46
100 101 3.057736 TCGAACCCAACGAGAAGTAGAAG 60.058 47.826 0.00 0.00 34.85 2.85
101 102 2.886523 TCGAACCCAACGAGAAGTAGAA 59.113 45.455 0.00 0.00 34.85 2.10
102 103 2.227388 GTCGAACCCAACGAGAAGTAGA 59.773 50.000 0.00 0.00 40.37 2.59
103 104 2.030540 TGTCGAACCCAACGAGAAGTAG 60.031 50.000 0.00 0.00 40.37 2.57
104 105 1.955778 TGTCGAACCCAACGAGAAGTA 59.044 47.619 0.00 0.00 40.37 2.24
105 106 0.748450 TGTCGAACCCAACGAGAAGT 59.252 50.000 0.00 0.00 40.37 3.01
106 107 1.137513 GTGTCGAACCCAACGAGAAG 58.862 55.000 0.00 0.00 40.37 2.85
107 108 0.748450 AGTGTCGAACCCAACGAGAA 59.252 50.000 0.00 0.00 40.37 2.87
108 109 0.313043 GAGTGTCGAACCCAACGAGA 59.687 55.000 0.00 0.00 40.37 4.04
109 110 0.666577 GGAGTGTCGAACCCAACGAG 60.667 60.000 0.00 0.00 40.37 4.18
110 111 1.111116 AGGAGTGTCGAACCCAACGA 61.111 55.000 0.00 0.00 37.43 3.85
111 112 0.599558 TAGGAGTGTCGAACCCAACG 59.400 55.000 0.00 0.00 0.00 4.10
112 113 1.617357 AGTAGGAGTGTCGAACCCAAC 59.383 52.381 0.00 0.00 0.00 3.77
113 114 2.005370 AGTAGGAGTGTCGAACCCAA 57.995 50.000 0.00 0.00 0.00 4.12
114 115 2.005370 AAGTAGGAGTGTCGAACCCA 57.995 50.000 0.00 0.00 0.00 4.51
115 116 3.243002 CGATAAGTAGGAGTGTCGAACCC 60.243 52.174 0.00 0.00 0.00 4.11
116 117 3.624861 TCGATAAGTAGGAGTGTCGAACC 59.375 47.826 0.00 0.00 35.48 3.62
117 118 4.871993 TCGATAAGTAGGAGTGTCGAAC 57.128 45.455 0.00 0.00 35.48 3.95
118 119 5.163683 CCTTTCGATAAGTAGGAGTGTCGAA 60.164 44.000 4.17 4.17 43.60 3.71
119 120 4.334759 CCTTTCGATAAGTAGGAGTGTCGA 59.665 45.833 0.00 0.00 36.46 4.20
120 121 4.334759 TCCTTTCGATAAGTAGGAGTGTCG 59.665 45.833 0.00 0.00 33.08 4.35
121 122 5.357596 AGTCCTTTCGATAAGTAGGAGTGTC 59.642 44.000 0.00 0.00 38.66 3.67
122 123 5.262804 AGTCCTTTCGATAAGTAGGAGTGT 58.737 41.667 0.00 0.00 38.66 3.55
123 124 5.838531 AGTCCTTTCGATAAGTAGGAGTG 57.161 43.478 0.00 0.00 38.66 3.51
124 125 7.344913 TCTTAGTCCTTTCGATAAGTAGGAGT 58.655 38.462 0.00 0.00 41.92 3.85
125 126 7.804843 TCTTAGTCCTTTCGATAAGTAGGAG 57.195 40.000 0.00 0.00 37.46 3.69
126 127 9.504708 CTATCTTAGTCCTTTCGATAAGTAGGA 57.495 37.037 0.00 0.00 34.50 2.94
127 128 9.504708 TCTATCTTAGTCCTTTCGATAAGTAGG 57.495 37.037 0.00 0.00 0.00 3.18
130 131 9.016438 GGATCTATCTTAGTCCTTTCGATAAGT 57.984 37.037 0.00 0.00 0.00 2.24
131 132 8.463607 GGGATCTATCTTAGTCCTTTCGATAAG 58.536 40.741 0.00 0.00 0.00 1.73
132 133 7.396623 GGGGATCTATCTTAGTCCTTTCGATAA 59.603 40.741 0.00 0.00 0.00 1.75
133 134 6.890814 GGGGATCTATCTTAGTCCTTTCGATA 59.109 42.308 0.00 0.00 0.00 2.92
134 135 5.717654 GGGGATCTATCTTAGTCCTTTCGAT 59.282 44.000 0.00 0.00 0.00 3.59
135 136 5.078256 GGGGATCTATCTTAGTCCTTTCGA 58.922 45.833 0.00 0.00 0.00 3.71
136 137 5.081032 AGGGGATCTATCTTAGTCCTTTCG 58.919 45.833 0.00 0.00 0.00 3.46
137 138 9.192642 GTATAGGGGATCTATCTTAGTCCTTTC 57.807 40.741 0.00 0.00 39.30 2.62
138 139 8.917546 AGTATAGGGGATCTATCTTAGTCCTTT 58.082 37.037 0.00 0.00 39.30 3.11
139 140 8.485162 AGTATAGGGGATCTATCTTAGTCCTT 57.515 38.462 0.00 0.00 39.30 3.36
140 141 8.485162 AAGTATAGGGGATCTATCTTAGTCCT 57.515 38.462 0.00 0.00 39.30 3.85
162 163 9.331466 ACTATGATAGATTGATGACCCATAAGT 57.669 33.333 6.45 0.00 0.00 2.24
163 164 9.597170 CACTATGATAGATTGATGACCCATAAG 57.403 37.037 6.45 0.00 0.00 1.73
164 165 8.043113 GCACTATGATAGATTGATGACCCATAA 58.957 37.037 6.45 0.00 0.00 1.90
165 166 7.401204 AGCACTATGATAGATTGATGACCCATA 59.599 37.037 6.45 0.00 0.00 2.74
166 167 6.215023 AGCACTATGATAGATTGATGACCCAT 59.785 38.462 6.45 0.00 0.00 4.00
167 168 5.545335 AGCACTATGATAGATTGATGACCCA 59.455 40.000 6.45 0.00 0.00 4.51
168 169 6.047511 AGCACTATGATAGATTGATGACCC 57.952 41.667 6.45 0.00 0.00 4.46
169 170 7.973388 GTCTAGCACTATGATAGATTGATGACC 59.027 40.741 6.45 0.00 45.59 4.02
170 171 7.696035 CGTCTAGCACTATGATAGATTGATGAC 59.304 40.741 6.45 6.40 45.59 3.06
171 172 7.607991 TCGTCTAGCACTATGATAGATTGATGA 59.392 37.037 6.45 6.46 45.59 2.92
172 173 7.756558 TCGTCTAGCACTATGATAGATTGATG 58.243 38.462 6.45 4.52 45.59 3.07
173 174 7.929941 TCGTCTAGCACTATGATAGATTGAT 57.070 36.000 6.45 0.00 45.59 2.57
174 175 7.929941 ATCGTCTAGCACTATGATAGATTGA 57.070 36.000 6.45 8.65 45.59 2.57
175 176 8.888716 AGTATCGTCTAGCACTATGATAGATTG 58.111 37.037 6.45 4.15 45.59 2.67
176 177 8.888716 CAGTATCGTCTAGCACTATGATAGATT 58.111 37.037 6.45 0.00 45.59 2.40
193 194 1.067582 CCCCTTCGCCAGTATCGTC 59.932 63.158 0.00 0.00 0.00 4.20
201 202 1.910580 GATGTTCTCCCCCTTCGCCA 61.911 60.000 0.00 0.00 0.00 5.69
214 215 3.181504 CGGGAAAACATTACCGGATGTTC 60.182 47.826 18.78 9.77 46.53 3.18
224 225 6.767524 AATGCATACTTCGGGAAAACATTA 57.232 33.333 0.00 0.00 0.00 1.90
241 242 5.640732 GTTACATCTGTCCGAAAAATGCAT 58.359 37.500 0.00 0.00 0.00 3.96
273 274 3.458189 AGCATAGAGAACATGTAACCGC 58.542 45.455 0.00 0.00 0.00 5.68
299 324 6.819649 AGAAAAACGATACGAATCCCAATACA 59.180 34.615 0.00 0.00 0.00 2.29
305 330 5.541098 AACAGAAAAACGATACGAATCCC 57.459 39.130 0.00 0.00 0.00 3.85
469 495 1.471829 ATGTCAGTGTCGGTGGCTGA 61.472 55.000 0.00 0.00 36.97 4.26
504 530 1.442769 ATGTGACAATGACAGACGGC 58.557 50.000 0.00 0.00 0.00 5.68
544 570 2.504585 CTCCCACCCCTAGTTAGTTTCC 59.495 54.545 0.00 0.00 0.00 3.13
545 571 3.447950 TCTCCCACCCCTAGTTAGTTTC 58.552 50.000 0.00 0.00 0.00 2.78
567 1840 0.913451 AGCTCATCTCACCCTTGGCT 60.913 55.000 0.00 0.00 0.00 4.75
621 1897 2.240162 CTAGGGTGGCAACGAGGGAC 62.240 65.000 0.00 0.00 42.51 4.46
1011 2292 1.004560 CTGGCCAAGCACGAAGAGA 60.005 57.895 7.01 0.00 0.00 3.10
1171 2452 7.064728 AGCAAGTAACTAATTGAAATCGAGGAC 59.935 37.037 1.30 0.00 33.49 3.85
1192 2476 1.372087 GACCCATCCGAAGCAGCAAG 61.372 60.000 0.00 0.00 0.00 4.01
1512 2796 6.975197 TGACACTGAAGCGAGATTAATTAGAG 59.025 38.462 0.00 0.00 0.00 2.43
1513 2797 6.752351 GTGACACTGAAGCGAGATTAATTAGA 59.248 38.462 0.00 0.00 0.00 2.10
1515 2799 6.394809 TGTGACACTGAAGCGAGATTAATTA 58.605 36.000 7.20 0.00 0.00 1.40
1516 2800 5.237815 TGTGACACTGAAGCGAGATTAATT 58.762 37.500 7.20 0.00 0.00 1.40
1517 2801 4.820897 TGTGACACTGAAGCGAGATTAAT 58.179 39.130 7.20 0.00 0.00 1.40
1518 2802 4.251543 TGTGACACTGAAGCGAGATTAA 57.748 40.909 7.20 0.00 0.00 1.40
1519 2803 3.934457 TGTGACACTGAAGCGAGATTA 57.066 42.857 7.20 0.00 0.00 1.75
1520 2804 2.820059 TGTGACACTGAAGCGAGATT 57.180 45.000 7.20 0.00 0.00 2.40
1521 2805 2.614779 CATGTGACACTGAAGCGAGAT 58.385 47.619 7.20 0.00 0.00 2.75
1522 2806 1.936656 GCATGTGACACTGAAGCGAGA 60.937 52.381 7.20 0.00 0.00 4.04
1530 2814 2.647529 AATGCATGCATGTGACACTG 57.352 45.000 32.79 1.63 36.68 3.66
1534 2818 2.343246 CGTTCAAATGCATGCATGTGAC 59.657 45.455 40.66 32.80 46.72 3.67
1536 2820 2.343246 GTCGTTCAAATGCATGCATGTG 59.657 45.455 35.62 35.62 41.70 3.21
1665 2950 2.366916 CGAGAATATCTGACCAAGGCCT 59.633 50.000 0.00 0.00 0.00 5.19
1671 2956 3.595190 TCCTCCGAGAATATCTGACCA 57.405 47.619 0.00 0.00 0.00 4.02
2412 3697 1.922570 ATGTCATCGCACGTACCTTC 58.077 50.000 0.00 0.00 0.00 3.46
2423 3708 7.355332 TGAATATGTGCAATCTATGTCATCG 57.645 36.000 0.00 0.00 31.74 3.84
2424 3709 8.943002 TGATGAATATGTGCAATCTATGTCATC 58.057 33.333 13.17 13.17 31.74 2.92
2425 3710 8.857694 TGATGAATATGTGCAATCTATGTCAT 57.142 30.769 0.00 0.00 33.11 3.06
2426 3711 8.726988 CATGATGAATATGTGCAATCTATGTCA 58.273 33.333 0.00 0.00 0.00 3.58
2427 3712 8.943002 TCATGATGAATATGTGCAATCTATGTC 58.057 33.333 0.00 0.00 0.00 3.06
2480 3770 9.955208 CAATTAACTATGCAAAAGCATCATCTA 57.045 29.630 6.19 0.00 0.00 1.98
2481 3771 7.924412 CCAATTAACTATGCAAAAGCATCATCT 59.076 33.333 6.19 0.00 0.00 2.90
2482 3772 7.306983 GCCAATTAACTATGCAAAAGCATCATC 60.307 37.037 6.19 0.00 0.00 2.92
2483 3773 6.480981 GCCAATTAACTATGCAAAAGCATCAT 59.519 34.615 6.19 0.00 0.00 2.45
2484 3774 5.811613 GCCAATTAACTATGCAAAAGCATCA 59.188 36.000 6.19 0.00 0.00 3.07
2485 3775 5.811613 TGCCAATTAACTATGCAAAAGCATC 59.188 36.000 6.19 0.00 0.00 3.91
2486 3776 5.581874 GTGCCAATTAACTATGCAAAAGCAT 59.418 36.000 8.14 8.14 33.11 3.79
2487 3777 4.928615 GTGCCAATTAACTATGCAAAAGCA 59.071 37.500 0.00 0.00 33.11 3.91
2488 3778 4.928615 TGTGCCAATTAACTATGCAAAAGC 59.071 37.500 0.00 0.00 33.11 3.51
2489 3779 7.457868 CAATGTGCCAATTAACTATGCAAAAG 58.542 34.615 0.00 0.00 33.11 2.27
2490 3780 6.128336 GCAATGTGCCAATTAACTATGCAAAA 60.128 34.615 0.00 0.00 37.42 2.44
2491 3781 5.350914 GCAATGTGCCAATTAACTATGCAAA 59.649 36.000 0.00 0.00 37.42 3.68
2492 3782 4.869297 GCAATGTGCCAATTAACTATGCAA 59.131 37.500 0.00 0.00 37.42 4.08
2493 3783 4.431809 GCAATGTGCCAATTAACTATGCA 58.568 39.130 0.00 0.00 37.42 3.96
2494 3784 3.486841 CGCAATGTGCCAATTAACTATGC 59.513 43.478 0.00 0.00 41.12 3.14
2495 3785 3.486841 GCGCAATGTGCCAATTAACTATG 59.513 43.478 7.68 0.00 41.12 2.23
2496 3786 3.130164 TGCGCAATGTGCCAATTAACTAT 59.870 39.130 16.68 0.00 41.12 2.12
2497 3787 2.489722 TGCGCAATGTGCCAATTAACTA 59.510 40.909 16.68 0.00 41.12 2.24
2498 3788 1.271934 TGCGCAATGTGCCAATTAACT 59.728 42.857 16.68 0.00 41.12 2.24
2499 3789 1.707632 TGCGCAATGTGCCAATTAAC 58.292 45.000 16.68 0.00 41.12 2.01
2500 3790 2.669300 ATGCGCAATGTGCCAATTAA 57.331 40.000 17.11 0.00 41.12 1.40
2501 3791 2.669300 AATGCGCAATGTGCCAATTA 57.331 40.000 17.11 0.00 41.12 1.40
2502 3792 1.465387 CAAATGCGCAATGTGCCAATT 59.535 42.857 17.11 7.39 41.12 2.32
2503 3793 1.080298 CAAATGCGCAATGTGCCAAT 58.920 45.000 17.11 0.75 41.12 3.16
2504 3794 0.033090 TCAAATGCGCAATGTGCCAA 59.967 45.000 17.11 0.00 41.12 4.52
2505 3795 0.666880 GTCAAATGCGCAATGTGCCA 60.667 50.000 17.11 4.90 41.12 4.92
2506 3796 0.388907 AGTCAAATGCGCAATGTGCC 60.389 50.000 17.11 2.24 41.12 5.01
2507 3797 0.986992 GAGTCAAATGCGCAATGTGC 59.013 50.000 17.11 12.40 40.69 4.57
2508 3798 2.334971 TGAGTCAAATGCGCAATGTG 57.665 45.000 17.11 13.28 0.00 3.21
2509 3799 3.581024 AATGAGTCAAATGCGCAATGT 57.419 38.095 17.11 0.00 0.00 2.71
2510 3800 6.578020 AATTAATGAGTCAAATGCGCAATG 57.422 33.333 17.11 17.47 0.00 2.82
2511 3801 7.546667 AGAAAATTAATGAGTCAAATGCGCAAT 59.453 29.630 17.11 1.49 0.00 3.56
2512 3802 6.867816 AGAAAATTAATGAGTCAAATGCGCAA 59.132 30.769 17.11 0.00 0.00 4.85
2513 3803 6.389091 AGAAAATTAATGAGTCAAATGCGCA 58.611 32.000 14.96 14.96 0.00 6.09
2514 3804 6.875926 AGAAAATTAATGAGTCAAATGCGC 57.124 33.333 0.00 0.00 0.00 6.09
2515 3805 9.731519 GAAAAGAAAATTAATGAGTCAAATGCG 57.268 29.630 0.00 0.00 0.00 4.73
2561 3851 7.868922 TCTGTAGCAAGAAAAATGTACGAAGTA 59.131 33.333 0.00 0.00 45.11 2.24
2562 3852 7.225931 TTCTGTAGCAAGAAAAATGTACGAAGT 59.774 33.333 0.00 0.00 37.66 3.01
2563 3853 7.117241 TCTGTAGCAAGAAAAATGTACGAAG 57.883 36.000 0.00 0.00 0.00 3.79
2564 3854 7.485418 TTCTGTAGCAAGAAAAATGTACGAA 57.515 32.000 0.00 0.00 33.25 3.85
2565 3855 7.439955 TCTTTCTGTAGCAAGAAAAATGTACGA 59.560 33.333 9.60 1.65 43.67 3.43
2566 3856 7.530861 GTCTTTCTGTAGCAAGAAAAATGTACG 59.469 37.037 9.60 0.00 43.67 3.67
2580 3870 3.368236 CGGTAGCTTTGTCTTTCTGTAGC 59.632 47.826 0.00 0.00 0.00 3.58
2583 3873 3.391049 GACGGTAGCTTTGTCTTTCTGT 58.609 45.455 0.00 0.00 0.00 3.41
2693 3992 1.237285 GCGTTGGTGTTGCTGGATCT 61.237 55.000 0.00 0.00 0.00 2.75
2694 3993 1.210155 GCGTTGGTGTTGCTGGATC 59.790 57.895 0.00 0.00 0.00 3.36
2695 3994 2.616330 CGCGTTGGTGTTGCTGGAT 61.616 57.895 0.00 0.00 0.00 3.41
2696 3995 3.276091 CGCGTTGGTGTTGCTGGA 61.276 61.111 0.00 0.00 0.00 3.86
2697 3996 3.521308 GACGCGTTGGTGTTGCTGG 62.521 63.158 15.53 0.00 36.92 4.85
2698 3997 2.052237 GACGCGTTGGTGTTGCTG 60.052 61.111 15.53 0.00 36.92 4.41
2699 3998 2.512745 TGACGCGTTGGTGTTGCT 60.513 55.556 15.53 0.00 36.92 3.91
2700 3999 2.351888 GTGACGCGTTGGTGTTGC 60.352 61.111 15.53 0.00 36.92 4.17
2701 4000 1.983196 TTGGTGACGCGTTGGTGTTG 61.983 55.000 15.53 0.00 36.92 3.33
2713 4012 1.507141 CTGGAGTTGCCGTTGGTGAC 61.507 60.000 0.00 0.00 40.66 3.67
2739 4038 0.250338 GAAGGGTTGCTTCGTCTGGT 60.250 55.000 0.00 0.00 0.00 4.00
2746 4045 0.600057 CCTGCTTGAAGGGTTGCTTC 59.400 55.000 0.00 0.00 33.28 3.86
2770 4069 2.224209 CCACTTGTACCCTCTTTGACGT 60.224 50.000 0.00 0.00 0.00 4.34
2895 4194 3.900892 ACGCGGGCCACTAGATCG 61.901 66.667 12.47 0.00 0.00 3.69
3070 4369 5.502153 ACCGCGGCAATTTTTATGTATAA 57.498 34.783 28.58 0.00 0.00 0.98
3075 4374 3.112580 CCTAACCGCGGCAATTTTTATG 58.887 45.455 28.58 8.40 0.00 1.90
3079 4378 0.808755 CTCCTAACCGCGGCAATTTT 59.191 50.000 28.58 14.61 0.00 1.82
3118 4452 1.002868 CTGGCTCTGAACCCACCAG 60.003 63.158 0.00 0.00 41.78 4.00
3186 4520 0.317854 GGTCAAGTTTTCGCCTGCAC 60.318 55.000 0.00 0.00 0.00 4.57
3214 4562 4.612412 TTGGCCGTGACGTCACCC 62.612 66.667 36.01 31.44 43.66 4.61
3247 4595 0.323542 GGGACTCGGACTGGAAGAGA 60.324 60.000 0.00 0.00 37.43 3.10
3260 4608 1.545706 AACAGGGCGAGAAGGGACTC 61.546 60.000 0.00 0.00 38.49 3.36
3273 4621 3.817647 CTCTGAAACTGAAAGGAACAGGG 59.182 47.826 0.00 0.00 39.30 4.45
3317 4665 7.119709 TGAAAGGGATATGTATTTCGAGACA 57.880 36.000 0.14 0.14 35.01 3.41
3364 4712 7.504924 TCGTTGTCTTTCCATATTTTCTTGT 57.495 32.000 0.00 0.00 0.00 3.16
3376 4724 3.582780 ACTCGGTTATCGTTGTCTTTCC 58.417 45.455 0.00 0.00 40.32 3.13
3403 4751 1.399440 CAAGGTCACTCATGGCGATTG 59.601 52.381 0.00 0.00 0.00 2.67
3415 4763 1.104577 TTGTTTCCGGCCAAGGTCAC 61.105 55.000 2.24 0.00 0.00 3.67
3420 4768 0.318120 AAGCATTGTTTCCGGCCAAG 59.682 50.000 2.24 0.00 0.00 3.61
3458 4814 1.061566 GTTTGTGCGGACGGTATTAGC 59.938 52.381 1.60 0.00 0.00 3.09
3471 4827 3.670377 GGACAGGGCGGTTTGTGC 61.670 66.667 0.00 0.00 0.00 4.57
3479 4835 2.892425 GCGAGATTGGACAGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
3498 4854 5.897377 TCTTGCAGTAAAATCTTAAGGGC 57.103 39.130 1.85 0.00 0.00 5.19
3499 4855 8.522830 TCAATTCTTGCAGTAAAATCTTAAGGG 58.477 33.333 1.85 0.00 0.00 3.95
3515 5920 4.500375 GCATCCCTATTGGTCAATTCTTGC 60.500 45.833 1.28 2.48 34.77 4.01
3538 5943 9.612620 ATTCTTGCAGTAAAACTTTTTCTATCG 57.387 29.630 0.00 0.00 0.00 2.92
3601 6178 5.562635 TGTCCACCATTATTCGTAACCTTT 58.437 37.500 0.00 0.00 0.00 3.11
3627 6204 0.796927 GTTCCACGCAAGAGTTAGGC 59.203 55.000 0.00 0.00 43.62 3.93
3633 6210 5.352569 AGAGATAATTTGTTCCACGCAAGAG 59.647 40.000 0.00 0.00 43.62 2.85
3652 6229 7.856398 CGAACGTACAAATATGACTACAGAGAT 59.144 37.037 0.00 0.00 0.00 2.75
3710 6287 3.356529 AAAGGCAATCCTACAGTCAGG 57.643 47.619 0.00 0.00 43.40 3.86
3756 6338 5.503357 GCAAATGGAAATACATCTCGCGTTA 60.503 40.000 5.77 0.00 0.00 3.18
3799 6381 1.618343 TCTCAGACCTCGTTCATGCAA 59.382 47.619 0.00 0.00 0.00 4.08
3811 6393 4.100498 TCCACCGGTTATTAATCTCAGACC 59.900 45.833 2.97 0.00 0.00 3.85
3937 6522 2.025418 CGGGTCAAAGTTCGTCGGG 61.025 63.158 0.00 0.00 0.00 5.14
4054 6639 6.599244 CAGGTTACAGAAATCTAGAAATGCCA 59.401 38.462 0.00 0.00 0.00 4.92
4077 6662 1.821061 AAGGACCTCCACGAGCACAG 61.821 60.000 0.00 0.00 38.89 3.66
4105 6697 0.955919 CTCCCGGGAGCAAGTTTCAC 60.956 60.000 36.90 0.00 35.31 3.18
4221 6813 0.247419 GATGTGACTGCATGAACGCG 60.247 55.000 3.53 3.53 33.35 6.01
4229 6821 2.000429 CGTGAGATGATGTGACTGCA 58.000 50.000 0.00 0.00 0.00 4.41
4255 6847 6.538742 CCTGTCGAAAATATAGAGAGGCAAAA 59.461 38.462 0.00 0.00 38.36 2.44
4308 6972 8.198778 TCGCATAACTTTGGTTGTATATGACTA 58.801 33.333 0.00 0.00 36.92 2.59
4318 6982 5.356882 TTTCTCTCGCATAACTTTGGTTG 57.643 39.130 0.00 0.00 36.92 3.77
4319 6983 6.385649 TTTTTCTCTCGCATAACTTTGGTT 57.614 33.333 0.00 0.00 39.26 3.67
4347 7011 3.609175 CGAAACATTGCGTGGTTTGAGAT 60.609 43.478 4.45 0.00 40.77 2.75
4348 7018 2.286713 CGAAACATTGCGTGGTTTGAGA 60.287 45.455 4.45 0.00 40.77 3.27
4368 7038 6.393990 TGGATGAAATAAACCATGGAAAACG 58.606 36.000 21.47 0.00 0.00 3.60
4371 7041 6.379703 ACGATGGATGAAATAAACCATGGAAA 59.620 34.615 21.47 3.01 42.23 3.13
4422 7092 3.604875 TGAGAAAATACCGACAGGACC 57.395 47.619 0.00 0.00 41.02 4.46
4486 7156 0.955919 CAGGGTCGGGAAAAGACAGC 60.956 60.000 0.00 0.00 40.20 4.40
4537 7207 0.026803 GGTTTGATGATGTCGAGCGC 59.973 55.000 0.00 0.00 0.00 5.92
4558 7228 2.534903 GCGGATTTGCGGTAGGAGC 61.535 63.158 0.00 0.00 0.00 4.70
4618 7288 4.373116 GAGGTCGCGGCTGGTGAA 62.373 66.667 11.94 0.00 36.80 3.18
4639 7309 2.223971 TGGTCGTGTGGAGAAGAAGTTC 60.224 50.000 0.00 0.00 0.00 3.01
4678 7348 5.099042 GACAAGGTGTCAATGGGTATAGT 57.901 43.478 3.52 0.00 46.22 2.12
4699 7369 4.056125 CAGGGACGCTGCACTCGA 62.056 66.667 6.58 0.00 0.00 4.04
4704 7374 3.785859 GGGATCAGGGACGCTGCA 61.786 66.667 14.42 4.63 0.00 4.41
4742 7413 2.877786 TCTATGTGTTGCTTGTGTGTGG 59.122 45.455 0.00 0.00 0.00 4.17
4766 7441 0.961857 TGTGACTGCCATGGTGATGC 60.962 55.000 14.67 0.00 0.00 3.91
4821 7496 5.222007 ACCTTCTTGATGTGTTCCTTGAGAT 60.222 40.000 0.00 0.00 0.00 2.75
4831 7506 2.872245 CGTCACAACCTTCTTGATGTGT 59.128 45.455 4.86 0.00 42.80 3.72
4833 7508 3.469008 TCGTCACAACCTTCTTGATGT 57.531 42.857 0.00 0.00 0.00 3.06
4838 7513 3.139077 GGAACATCGTCACAACCTTCTT 58.861 45.455 0.00 0.00 0.00 2.52
4909 7584 3.853104 CCGACATGTGGCTAGGAAA 57.147 52.632 1.15 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.