Multiple sequence alignment - TraesCS6B01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G214500 chr6B 100.000 5658 0 0 1 5658 289820406 289826063 0.000000e+00 10449.0
1 TraesCS6B01G214500 chr6B 97.915 3981 50 7 1655 5628 289768182 289772136 0.000000e+00 6861.0
2 TraesCS6B01G214500 chr6B 97.890 3981 44 7 1655 5628 289782940 289786887 0.000000e+00 6850.0
3 TraesCS6B01G214500 chr6B 97.410 1660 32 5 1 1657 289781224 289782875 0.000000e+00 2817.0
4 TraesCS6B01G214500 chr6B 97.227 1659 36 4 1 1657 289766467 289768117 0.000000e+00 2800.0
5 TraesCS6B01G214500 chr6B 93.798 1564 64 9 1764 3327 134482009 134480479 0.000000e+00 2320.0
6 TraesCS6B01G214500 chr6B 84.177 1245 120 38 2000 3205 204355707 204354501 0.000000e+00 1136.0
7 TraesCS6B01G214500 chr6B 86.484 984 75 29 2111 3064 16957161 16958116 0.000000e+00 1027.0
8 TraesCS6B01G214500 chr6B 87.313 134 15 2 5113 5246 359808036 359808167 9.820000e-33 152.0
9 TraesCS6B01G214500 chr6B 100.000 41 0 0 4476 4516 289772137 289772177 6.080000e-10 76.8
10 TraesCS6B01G214500 chr6B 97.561 41 1 0 4476 4516 289786888 289786928 2.830000e-08 71.3
11 TraesCS6B01G214500 chr6A 89.594 1749 78 36 3326 5034 217770263 217771947 0.000000e+00 2126.0
12 TraesCS6B01G214500 chr6A 94.649 598 20 8 1003 1597 217769470 217770058 0.000000e+00 917.0
13 TraesCS6B01G214500 chr6A 91.099 191 10 1 390 580 217769247 217769430 9.410000e-63 252.0
14 TraesCS6B01G214500 chr6A 80.565 283 39 8 1763 2045 607842896 607843162 2.670000e-48 204.0
15 TraesCS6B01G214500 chr6A 91.566 83 6 1 5264 5345 217772826 217772908 4.630000e-21 113.0
16 TraesCS6B01G214500 chr6A 97.297 37 1 0 5031 5067 217772785 217772821 4.730000e-06 63.9
17 TraesCS6B01G214500 chr7B 94.892 1292 35 8 1764 3054 390741501 390740240 0.000000e+00 1991.0
18 TraesCS6B01G214500 chr7B 97.817 229 3 2 1 227 192454301 192454529 1.480000e-105 394.0
19 TraesCS6B01G214500 chr7B 97.009 234 5 2 1 232 439997252 439997019 5.310000e-105 392.0
20 TraesCS6B01G214500 chr7B 96.983 232 4 2 1 229 479235558 479235789 2.470000e-103 387.0
21 TraesCS6B01G214500 chr7B 79.310 522 102 4 1080 1597 484851116 484851635 1.500000e-95 361.0
22 TraesCS6B01G214500 chr7B 98.058 206 4 0 3122 3327 390740242 390740037 5.390000e-95 359.0
23 TraesCS6B01G214500 chr3B 85.484 1364 118 42 2001 3327 17281671 17282991 0.000000e+00 1349.0
24 TraesCS6B01G214500 chr3B 85.075 1273 109 36 1764 2981 4542280 4541034 0.000000e+00 1223.0
25 TraesCS6B01G214500 chr3B 83.905 1224 106 46 2010 3198 117940962 117939795 0.000000e+00 1085.0
26 TraesCS6B01G214500 chr3B 94.805 385 15 4 610 990 21401625 21402008 3.770000e-166 595.0
27 TraesCS6B01G214500 chr3B 90.099 303 27 2 3028 3327 473706764 473707066 1.910000e-104 390.0
28 TraesCS6B01G214500 chr2A 85.369 1367 123 38 2000 3327 615702686 615704014 0.000000e+00 1345.0
29 TraesCS6B01G214500 chr2A 92.157 51 1 2 1433 1480 748465491 748465441 1.020000e-07 69.4
30 TraesCS6B01G214500 chr3D 85.939 1273 96 32 2087 3327 590168228 590169449 0.000000e+00 1282.0
31 TraesCS6B01G214500 chr3D 88.170 989 70 21 2368 3332 576313079 576314044 0.000000e+00 1134.0
32 TraesCS6B01G214500 chr3D 82.028 651 61 22 1762 2381 576312412 576313037 2.350000e-138 503.0
33 TraesCS6B01G214500 chr3D 85.401 137 15 5 5110 5246 27688848 27688979 2.750000e-28 137.0
34 TraesCS6B01G214500 chr2B 84.996 1273 110 35 1764 2981 775130965 775129719 0.000000e+00 1218.0
35 TraesCS6B01G214500 chr2B 87.551 972 63 25 2123 3060 221998900 221999847 0.000000e+00 1072.0
36 TraesCS6B01G214500 chr2B 96.335 382 11 2 611 990 390868002 390867622 4.810000e-175 625.0
37 TraesCS6B01G214500 chr2B 96.084 383 13 1 608 988 531148280 531148662 1.730000e-174 623.0
38 TraesCS6B01G214500 chr2B 96.042 379 12 2 610 985 646691883 646692261 1.040000e-171 614.0
39 TraesCS6B01G214500 chr2B 94.603 315 13 3 680 991 485328133 485327820 8.520000e-133 484.0
40 TraesCS6B01G214500 chr2B 88.955 335 35 2 1764 2097 221998069 221998402 4.080000e-111 412.0
41 TraesCS6B01G214500 chr2B 96.970 231 5 2 1 229 746043688 746043458 2.470000e-103 387.0
42 TraesCS6B01G214500 chr6D 89.963 817 30 15 3810 4581 159516977 159517786 0.000000e+00 1007.0
43 TraesCS6B01G214500 chr6D 94.012 668 26 10 991 1655 159515496 159516152 0.000000e+00 1000.0
44 TraesCS6B01G214500 chr6D 91.042 480 22 9 3326 3791 159516318 159516790 3.720000e-176 628.0
45 TraesCS6B01G214500 chr6D 91.909 309 15 3 270 577 159510761 159511060 1.880000e-114 424.0
46 TraesCS6B01G214500 chr6D 94.737 95 5 0 4946 5040 159519440 159519534 1.270000e-31 148.0
47 TraesCS6B01G214500 chr6D 91.837 98 7 1 5248 5345 159519535 159519631 9.890000e-28 135.0
48 TraesCS6B01G214500 chr1B 94.545 385 19 1 610 992 321256922 321257306 1.360000e-165 593.0
49 TraesCS6B01G214500 chr1B 94.041 386 20 2 610 992 319190571 319190956 2.940000e-162 582.0
50 TraesCS6B01G214500 chr1B 90.909 55 2 2 1429 1480 61893047 61893101 2.830000e-08 71.3
51 TraesCS6B01G214500 chr7D 91.582 297 21 2 5365 5658 475500969 475501264 1.900000e-109 407.0
52 TraesCS6B01G214500 chr7D 89.562 297 27 2 5365 5658 136299010 136298715 1.920000e-99 374.0
53 TraesCS6B01G214500 chr7D 79.167 528 103 5 1080 1602 461925715 461926240 5.390000e-95 359.0
54 TraesCS6B01G214500 chr7D 84.328 134 19 2 5113 5246 458952771 458952902 4.600000e-26 130.0
55 TraesCS6B01G214500 chrUn 96.996 233 5 2 1 231 266373952 266374184 1.910000e-104 390.0
56 TraesCS6B01G214500 chr7A 80.306 523 97 5 1080 1598 538248305 538247785 1.910000e-104 390.0
57 TraesCS6B01G214500 chr7A 89.028 319 26 4 5347 5658 730042446 730042130 2.470000e-103 387.0
58 TraesCS6B01G214500 chr7A 88.785 321 26 3 5347 5657 32132809 32132489 8.890000e-103 385.0
59 TraesCS6B01G214500 chr7A 86.567 134 16 1 5113 5246 138974470 138974601 4.570000e-31 147.0
60 TraesCS6B01G214500 chr4B 96.970 231 5 2 1 229 133611191 133610961 2.470000e-103 387.0
61 TraesCS6B01G214500 chr4B 87.200 125 14 2 5113 5237 667599815 667599937 2.130000e-29 141.0
62 TraesCS6B01G214500 chr1D 90.753 292 23 2 5365 5653 348003016 348003306 2.470000e-103 387.0
63 TraesCS6B01G214500 chr5B 96.170 235 7 2 1 233 678165418 678165652 3.200000e-102 383.0
64 TraesCS6B01G214500 chr5B 87.692 325 25 10 5347 5657 671148894 671148571 1.160000e-96 364.0
65 TraesCS6B01G214500 chr4D 87.850 321 28 5 5347 5657 46471324 46471643 3.220000e-97 366.0
66 TraesCS6B01G214500 chr5D 87.023 131 15 2 5116 5246 292641773 292641645 4.570000e-31 147.0
67 TraesCS6B01G214500 chr5A 85.496 131 16 3 5116 5246 617995459 617995586 3.560000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G214500 chr6B 289820406 289826063 5657 False 10449.000000 10449 100.000000 1 5658 1 chr6B.!!$F2 5657
1 TraesCS6B01G214500 chr6B 289781224 289786928 5704 False 3246.100000 6850 97.620333 1 5628 3 chr6B.!!$F5 5627
2 TraesCS6B01G214500 chr6B 289766467 289772177 5710 False 3245.933333 6861 98.380667 1 5628 3 chr6B.!!$F4 5627
3 TraesCS6B01G214500 chr6B 134480479 134482009 1530 True 2320.000000 2320 93.798000 1764 3327 1 chr6B.!!$R1 1563
4 TraesCS6B01G214500 chr6B 204354501 204355707 1206 True 1136.000000 1136 84.177000 2000 3205 1 chr6B.!!$R2 1205
5 TraesCS6B01G214500 chr6B 16957161 16958116 955 False 1027.000000 1027 86.484000 2111 3064 1 chr6B.!!$F1 953
6 TraesCS6B01G214500 chr6A 217769247 217772908 3661 False 694.380000 2126 92.841000 390 5345 5 chr6A.!!$F2 4955
7 TraesCS6B01G214500 chr7B 390740037 390741501 1464 True 1175.000000 1991 96.475000 1764 3327 2 chr7B.!!$R2 1563
8 TraesCS6B01G214500 chr7B 484851116 484851635 519 False 361.000000 361 79.310000 1080 1597 1 chr7B.!!$F3 517
9 TraesCS6B01G214500 chr3B 17281671 17282991 1320 False 1349.000000 1349 85.484000 2001 3327 1 chr3B.!!$F1 1326
10 TraesCS6B01G214500 chr3B 4541034 4542280 1246 True 1223.000000 1223 85.075000 1764 2981 1 chr3B.!!$R1 1217
11 TraesCS6B01G214500 chr3B 117939795 117940962 1167 True 1085.000000 1085 83.905000 2010 3198 1 chr3B.!!$R2 1188
12 TraesCS6B01G214500 chr2A 615702686 615704014 1328 False 1345.000000 1345 85.369000 2000 3327 1 chr2A.!!$F1 1327
13 TraesCS6B01G214500 chr3D 590168228 590169449 1221 False 1282.000000 1282 85.939000 2087 3327 1 chr3D.!!$F2 1240
14 TraesCS6B01G214500 chr3D 576312412 576314044 1632 False 818.500000 1134 85.099000 1762 3332 2 chr3D.!!$F3 1570
15 TraesCS6B01G214500 chr2B 775129719 775130965 1246 True 1218.000000 1218 84.996000 1764 2981 1 chr2B.!!$R4 1217
16 TraesCS6B01G214500 chr2B 221998069 221999847 1778 False 742.000000 1072 88.253000 1764 3060 2 chr2B.!!$F3 1296
17 TraesCS6B01G214500 chr6D 159515496 159519631 4135 False 583.600000 1007 92.318200 991 5345 5 chr6D.!!$F2 4354
18 TraesCS6B01G214500 chr7D 461925715 461926240 525 False 359.000000 359 79.167000 1080 1602 1 chr7D.!!$F2 522
19 TraesCS6B01G214500 chr7A 538247785 538248305 520 True 390.000000 390 80.306000 1080 1598 1 chr7A.!!$R2 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.035458 CCCAGGCCGCTCTATTTAGG 59.965 60.0 0.00 0.0 0.00 2.69 F
454 457 0.320771 GTCTCCCACACACGCTGAAT 60.321 55.0 0.00 0.0 0.00 2.57 F
2250 2861 0.250124 CGTGGCTACCCAACAAGACA 60.250 55.0 0.00 0.0 44.33 3.41 F
3646 4394 0.244721 GTGCCAAATGGTCTTGAGGC 59.755 55.0 0.71 0.0 42.32 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 1791 0.445436 CTTGCAGGCTGTAAGAAGCG 59.555 55.000 33.34 12.49 41.68 4.68 R
2237 2848 0.250124 CCACGCTGTCTTGTTGGGTA 60.250 55.000 0.00 0.00 0.00 3.69 R
4067 5008 0.608640 GTCTGAGAGAAAAGCCCCGA 59.391 55.000 0.00 0.00 0.00 5.14 R
4771 5760 1.647629 CAAGAGCGCATGCATCTCC 59.352 57.895 24.82 12.78 46.23 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.772189 CGGCGTCTTTTGAGAGCG 59.228 61.111 0.00 0.00 35.13 5.03
77 78 1.374252 GGCGTCTTTTGAGAGCGGA 60.374 57.895 0.00 0.00 35.13 5.54
99 100 6.274579 GGAAACGACCAAGTTTAAATTTCCA 58.725 36.000 15.78 0.00 43.54 3.53
106 107 6.758254 ACCAAGTTTAAATTTCCACATCCTG 58.242 36.000 0.00 0.00 0.00 3.86
194 195 0.035458 CCCAGGCCGCTCTATTTAGG 59.965 60.000 0.00 0.00 0.00 2.69
266 268 1.346395 TCCTCGTTGGCACACTTGTAT 59.654 47.619 0.00 0.00 39.29 2.29
304 306 7.280356 ACAACTGCTAGTCTTTTCTCCTTTTA 58.720 34.615 0.00 0.00 0.00 1.52
454 457 0.320771 GTCTCCCACACACGCTGAAT 60.321 55.000 0.00 0.00 0.00 2.57
930 943 9.846248 GGTGTTAAATATATTTCATCTGGCATC 57.154 33.333 13.95 2.26 0.00 3.91
1170 1188 3.622826 CTCGGGGGTGTGGTTCGT 61.623 66.667 0.00 0.00 0.00 3.85
1238 1256 4.804420 TCCTGGGCGGCCTCATCT 62.804 66.667 29.87 0.00 0.00 2.90
1352 1370 1.370657 CTTATCGCGCTCCTCGTCC 60.371 63.158 5.56 0.00 41.07 4.79
1691 1791 8.693625 AGGAGTAACAGTAGTATCACATTTACC 58.306 37.037 0.00 0.00 0.00 2.85
1784 1886 3.773119 AGAGTCAATTACACCACCGGTAT 59.227 43.478 6.87 0.00 32.11 2.73
1871 1973 2.519302 GGCTGGGGCGTGCATATT 60.519 61.111 0.00 0.00 39.81 1.28
2246 2857 2.666862 CGCGTGGCTACCCAACAA 60.667 61.111 0.00 0.00 44.33 2.83
2247 2858 2.677003 CGCGTGGCTACCCAACAAG 61.677 63.158 0.00 0.00 44.33 3.16
2248 2859 1.302192 GCGTGGCTACCCAACAAGA 60.302 57.895 0.00 0.00 44.33 3.02
2249 2860 1.574702 GCGTGGCTACCCAACAAGAC 61.575 60.000 0.00 0.00 44.33 3.01
2250 2861 0.250124 CGTGGCTACCCAACAAGACA 60.250 55.000 0.00 0.00 44.33 3.41
2251 2862 1.523758 GTGGCTACCCAACAAGACAG 58.476 55.000 0.00 0.00 44.33 3.51
2252 2863 0.250727 TGGCTACCCAACAAGACAGC 60.251 55.000 0.00 0.00 38.46 4.40
2253 2864 1.298859 GGCTACCCAACAAGACAGCG 61.299 60.000 0.00 0.00 0.00 5.18
2254 2865 0.602905 GCTACCCAACAAGACAGCGT 60.603 55.000 0.00 0.00 0.00 5.07
2255 2866 1.148310 CTACCCAACAAGACAGCGTG 58.852 55.000 0.00 0.00 0.00 5.34
2256 2867 0.250124 TACCCAACAAGACAGCGTGG 60.250 55.000 0.00 0.00 0.00 4.94
2257 2868 2.639286 CCAACAAGACAGCGTGGC 59.361 61.111 0.00 0.00 0.00 5.01
3336 4071 2.136026 AGTGACTTTTCCCACCTCCTT 58.864 47.619 0.00 0.00 34.00 3.36
3646 4394 0.244721 GTGCCAAATGGTCTTGAGGC 59.755 55.000 0.71 0.00 42.32 4.70
3735 4483 7.131565 TGCGAATATAATTGAGTACGTAACGA 58.868 34.615 0.00 0.00 0.00 3.85
4067 5008 4.916273 GTTTGCCACCGCGCGTTT 62.916 61.111 29.95 12.72 38.08 3.60
4130 5073 0.608130 CTCCACCTCACGTGATTGGA 59.392 55.000 31.92 31.92 46.20 3.53
4771 5760 5.527214 TGCATGTATCGTGGAGAATTTTAGG 59.473 40.000 0.00 0.00 0.00 2.69
4919 7180 4.001652 CTGCAACAGTGATCACTTGAGAT 58.998 43.478 25.84 7.11 40.20 2.75
5082 8258 3.711704 ACATGTATCTCCCTCCGTTTCAT 59.288 43.478 0.00 0.00 0.00 2.57
5161 8337 5.163953 ACGAAGCAAAATGAGTGAATCTACG 60.164 40.000 0.00 0.00 0.00 3.51
5454 8630 7.873505 GTGAGTGAGACTAAAGTTTAGTTCCAT 59.126 37.037 25.29 14.06 0.00 3.41
5457 8633 7.873505 AGTGAGACTAAAGTTTAGTTCCATCAC 59.126 37.037 29.62 29.62 32.97 3.06
5507 8683 7.676683 TTTATAAGGTGAGCTCTTCTACCAT 57.323 36.000 19.88 12.40 35.66 3.55
5628 8804 0.593518 CGAGGACAGAGCTATGCACG 60.594 60.000 8.60 5.54 0.00 5.34
5630 8806 0.898320 AGGACAGAGCTATGCACGTT 59.102 50.000 8.60 0.00 0.00 3.99
5634 8810 1.273606 ACAGAGCTATGCACGTTGTCT 59.726 47.619 8.60 0.00 0.00 3.41
5635 8811 2.492088 ACAGAGCTATGCACGTTGTCTA 59.508 45.455 8.60 0.00 0.00 2.59
5636 8812 3.131223 ACAGAGCTATGCACGTTGTCTAT 59.869 43.478 8.60 0.00 0.00 1.98
5637 8813 4.338400 ACAGAGCTATGCACGTTGTCTATA 59.662 41.667 8.60 0.00 0.00 1.31
5638 8814 5.010112 ACAGAGCTATGCACGTTGTCTATAT 59.990 40.000 8.60 0.00 0.00 0.86
5639 8815 5.923114 CAGAGCTATGCACGTTGTCTATATT 59.077 40.000 0.00 0.00 0.00 1.28
5640 8816 6.422100 CAGAGCTATGCACGTTGTCTATATTT 59.578 38.462 0.00 0.00 0.00 1.40
5641 8817 6.986817 AGAGCTATGCACGTTGTCTATATTTT 59.013 34.615 0.00 0.00 0.00 1.82
5642 8818 7.495934 AGAGCTATGCACGTTGTCTATATTTTT 59.504 33.333 0.00 0.00 0.00 1.94
5644 8820 6.140737 GCTATGCACGTTGTCTATATTTTTGC 59.859 38.462 0.00 0.00 0.00 3.68
5645 8821 5.621197 TGCACGTTGTCTATATTTTTGCT 57.379 34.783 0.00 0.00 0.00 3.91
5646 8822 5.389778 TGCACGTTGTCTATATTTTTGCTG 58.610 37.500 0.00 0.00 0.00 4.41
5648 8824 5.631026 CACGTTGTCTATATTTTTGCTGCT 58.369 37.500 0.00 0.00 0.00 4.24
5650 8826 4.957967 CGTTGTCTATATTTTTGCTGCTCG 59.042 41.667 0.00 0.00 0.00 5.03
5651 8827 5.266242 GTTGTCTATATTTTTGCTGCTCGG 58.734 41.667 0.00 0.00 0.00 4.63
5653 8829 4.127171 GTCTATATTTTTGCTGCTCGGGA 58.873 43.478 0.00 0.00 0.00 5.14
5654 8830 4.574828 GTCTATATTTTTGCTGCTCGGGAA 59.425 41.667 0.00 0.00 0.00 3.97
5655 8831 5.065988 GTCTATATTTTTGCTGCTCGGGAAA 59.934 40.000 0.00 0.00 0.00 3.13
5656 8832 4.799564 ATATTTTTGCTGCTCGGGAAAA 57.200 36.364 0.00 4.36 35.38 2.29
5657 8833 3.683365 ATTTTTGCTGCTCGGGAAAAT 57.317 38.095 8.56 3.84 36.65 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 6.199531 GTGGAAATTTAAACTTGGTCGTTTCC 59.800 38.462 14.56 14.56 42.14 3.13
77 78 6.631962 TGTGGAAATTTAAACTTGGTCGTTT 58.368 32.000 0.00 0.00 40.06 3.60
304 306 9.862149 TTAGTGAAAGTAGAAAGGAAAAAGGAT 57.138 29.630 0.00 0.00 0.00 3.24
346 348 8.585881 CACTAGCTTATAGCCTTATAGGAAACA 58.414 37.037 0.00 0.00 43.77 2.83
454 457 2.434884 GGCTTGTCAGCTAGCGCA 60.435 61.111 11.47 7.32 46.44 6.09
930 943 1.927210 GTATGCCACGCAGACGATG 59.073 57.895 0.00 0.00 43.65 3.84
1336 1354 2.203167 AGGACGAGGAGCGCGATA 60.203 61.111 12.10 0.00 46.04 2.92
1427 1445 1.676635 GCAGCCACATGGAGAAGCA 60.677 57.895 0.87 0.00 37.39 3.91
1691 1791 0.445436 CTTGCAGGCTGTAAGAAGCG 59.555 55.000 33.34 12.49 41.68 4.68
1871 1973 2.258591 GAGCGAGACTTGCACCGA 59.741 61.111 17.11 0.00 33.85 4.69
2237 2848 0.250124 CCACGCTGTCTTGTTGGGTA 60.250 55.000 0.00 0.00 0.00 3.69
2238 2849 1.525995 CCACGCTGTCTTGTTGGGT 60.526 57.895 0.00 0.00 0.00 4.51
2239 2850 2.908073 GCCACGCTGTCTTGTTGGG 61.908 63.158 0.00 0.00 0.00 4.12
2240 2851 0.602638 TAGCCACGCTGTCTTGTTGG 60.603 55.000 0.00 0.00 40.10 3.77
2241 2852 0.512952 GTAGCCACGCTGTCTTGTTG 59.487 55.000 0.00 0.00 40.10 3.33
2242 2853 0.602905 GGTAGCCACGCTGTCTTGTT 60.603 55.000 0.00 0.00 40.10 2.83
2243 2854 1.004918 GGTAGCCACGCTGTCTTGT 60.005 57.895 0.00 0.00 40.10 3.16
2244 2855 1.741770 GGGTAGCCACGCTGTCTTG 60.742 63.158 5.96 0.00 40.10 3.02
2245 2856 1.764571 TTGGGTAGCCACGCTGTCTT 61.765 55.000 14.60 0.00 40.10 3.01
2246 2857 2.214216 TTGGGTAGCCACGCTGTCT 61.214 57.895 14.60 0.00 40.10 3.41
2247 2858 2.033194 GTTGGGTAGCCACGCTGTC 61.033 63.158 14.60 0.00 40.10 3.51
2248 2859 2.032071 GTTGGGTAGCCACGCTGT 59.968 61.111 14.60 0.00 40.10 4.40
2249 2860 1.577328 CTTGTTGGGTAGCCACGCTG 61.577 60.000 14.60 0.91 40.10 5.18
2250 2861 1.302511 CTTGTTGGGTAGCCACGCT 60.303 57.895 14.60 0.00 43.41 5.07
2251 2862 1.302192 TCTTGTTGGGTAGCCACGC 60.302 57.895 14.60 10.36 38.08 5.34
2252 2863 0.250124 TGTCTTGTTGGGTAGCCACG 60.250 55.000 14.60 2.81 0.00 4.94
2253 2864 1.975660 TTGTCTTGTTGGGTAGCCAC 58.024 50.000 14.60 9.71 0.00 5.01
2254 2865 2.738587 TTTGTCTTGTTGGGTAGCCA 57.261 45.000 10.27 10.27 0.00 4.75
2255 2866 4.765339 AGTTATTTGTCTTGTTGGGTAGCC 59.235 41.667 3.29 3.29 0.00 3.93
2256 2867 5.705905 AGAGTTATTTGTCTTGTTGGGTAGC 59.294 40.000 0.00 0.00 0.00 3.58
2257 2868 7.745620 AAGAGTTATTTGTCTTGTTGGGTAG 57.254 36.000 0.00 0.00 31.63 3.18
3336 4071 9.083422 TGTTCATTTTGTGGAATCCTATGTTTA 57.917 29.630 0.00 0.00 0.00 2.01
3735 4483 0.965363 CGCCACCCAAGTAATTGCCT 60.965 55.000 0.00 0.00 0.00 4.75
4067 5008 0.608640 GTCTGAGAGAAAAGCCCCGA 59.391 55.000 0.00 0.00 0.00 5.14
4130 5073 7.729116 TGGATCTGAAGCAATTTTCTTTTCTT 58.271 30.769 0.00 0.00 0.00 2.52
4466 5455 3.305773 GACGACGAGCGCGATGTC 61.306 66.667 19.05 18.77 46.04 3.06
4771 5760 1.647629 CAAGAGCGCATGCATCTCC 59.352 57.895 24.82 12.78 46.23 3.71
4919 7180 6.255670 CGAATTAACAGATGAGATTCGTTCCA 59.744 38.462 15.12 0.00 42.24 3.53
5134 8310 7.009568 AGATTCACTCATTTTGCTTCGTATC 57.990 36.000 0.00 0.00 0.00 2.24
5454 8630 4.098960 ACAAGTCTTACTCAACTTCCGTGA 59.901 41.667 0.00 0.00 33.53 4.35
5457 8633 4.922103 GGTACAAGTCTTACTCAACTTCCG 59.078 45.833 0.00 0.00 33.53 4.30
5507 8683 6.372659 GTCTCCTCTTTTCATGCTCATACAAA 59.627 38.462 0.00 0.00 0.00 2.83
5628 8804 5.266242 CCGAGCAGCAAAAATATAGACAAC 58.734 41.667 0.00 0.00 0.00 3.32
5630 8806 3.876914 CCCGAGCAGCAAAAATATAGACA 59.123 43.478 0.00 0.00 0.00 3.41
5634 8810 5.906113 TTTTCCCGAGCAGCAAAAATATA 57.094 34.783 0.00 0.00 0.00 0.86
5635 8811 4.799564 TTTTCCCGAGCAGCAAAAATAT 57.200 36.364 0.00 0.00 0.00 1.28
5636 8812 4.799564 ATTTTCCCGAGCAGCAAAAATA 57.200 36.364 0.00 0.00 30.10 1.40
5637 8813 3.683365 ATTTTCCCGAGCAGCAAAAAT 57.317 38.095 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.