Multiple sequence alignment - TraesCS6B01G213000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G213000 chr6B 100.000 3020 0 0 1 3020 286713959 286710940 0.000000e+00 5578
1 TraesCS6B01G213000 chr6B 85.400 637 85 6 769 1401 307446742 307447374 0.000000e+00 654
2 TraesCS6B01G213000 chr6B 92.571 175 10 1 613 787 286711837 286711666 6.470000e-62 248
3 TraesCS6B01G213000 chr1B 89.499 1057 82 7 613 1655 347777245 347778286 0.000000e+00 1310
4 TraesCS6B01G213000 chr1B 89.870 997 83 8 917 1899 415110311 415111303 0.000000e+00 1266
5 TraesCS6B01G213000 chr1B 91.586 618 42 8 1 614 321116605 321115994 0.000000e+00 845
6 TraesCS6B01G213000 chr1B 90.829 567 32 7 1749 2295 347778650 347779216 0.000000e+00 741
7 TraesCS6B01G213000 chr1B 94.866 409 21 0 1886 2294 347777008 347777416 9.130000e-180 640
8 TraesCS6B01G213000 chr1B 92.571 175 10 1 613 787 347779044 347779215 6.470000e-62 248
9 TraesCS6B01G213000 chr7B 87.127 1173 101 18 908 2038 716499288 716498124 0.000000e+00 1284
10 TraesCS6B01G213000 chr7B 88.956 996 77 17 916 1902 716431797 716432768 0.000000e+00 1199
11 TraesCS6B01G213000 chr7B 89.262 894 89 3 916 1804 250963245 250962354 0.000000e+00 1112
12 TraesCS6B01G213000 chr4B 91.089 909 67 2 908 1802 527335926 527335018 0.000000e+00 1218
13 TraesCS6B01G213000 chr4B 89.567 901 68 4 916 1802 527345819 527344931 0.000000e+00 1120
14 TraesCS6B01G213000 chr7A 89.588 922 72 9 915 1821 13545943 13545031 0.000000e+00 1149
15 TraesCS6B01G213000 chr7A 91.475 610 49 3 3 612 714969118 714968512 0.000000e+00 835
16 TraesCS6B01G213000 chr2B 88.956 833 86 3 992 1819 342797231 342798062 0.000000e+00 1024
17 TraesCS6B01G213000 chr2B 91.721 616 41 10 1 612 512569813 512569204 0.000000e+00 846
18 TraesCS6B01G213000 chr2B 92.679 560 34 3 613 1172 795769809 795770361 0.000000e+00 800
19 TraesCS6B01G213000 chr2B 93.143 175 9 1 613 787 795771182 795771353 1.390000e-63 254
20 TraesCS6B01G213000 chr5B 86.755 906 88 17 772 1664 692884787 692883901 0.000000e+00 979
21 TraesCS6B01G213000 chr4A 93.475 613 34 5 1 612 661961191 661960584 0.000000e+00 905
22 TraesCS6B01G213000 chr4A 91.768 413 28 5 1886 2294 159804680 159804270 1.210000e-158 569
23 TraesCS6B01G213000 chr4A 89.492 295 28 1 613 907 159804441 159804150 1.320000e-98 370
24 TraesCS6B01G213000 chr5D 93.042 618 32 10 1 614 352831318 352830708 0.000000e+00 893
25 TraesCS6B01G213000 chr5D 91.857 614 42 8 1 612 57019263 57018656 0.000000e+00 850
26 TraesCS6B01G213000 chr2D 92.345 614 37 10 1 612 33991983 33991378 0.000000e+00 865
27 TraesCS6B01G213000 chr2D 91.545 615 42 9 1 612 548731559 548730952 0.000000e+00 839
28 TraesCS6B01G213000 chr2D 89.704 641 56 4 771 1402 167765988 167766627 0.000000e+00 809
29 TraesCS6B01G213000 chr7D 92.007 613 41 8 3 612 80035570 80036177 0.000000e+00 854
30 TraesCS6B01G213000 chr1D 90.562 498 34 3 1801 2295 393706434 393706921 0.000000e+00 647
31 TraesCS6B01G213000 chr1D 92.944 411 25 4 1886 2294 487859076 487859484 2.000000e-166 595
32 TraesCS6B01G213000 chrUn 90.316 475 39 7 1824 2294 63362611 63363082 1.540000e-172 616
33 TraesCS6B01G213000 chr3D 93.187 411 26 2 1886 2294 547544151 547543741 1.200000e-168 603
34 TraesCS6B01G213000 chr3D 91.156 294 23 1 613 906 547543912 547543622 2.180000e-106 396
35 TraesCS6B01G213000 chr3D 83.742 326 43 5 1674 1993 563286910 563287231 1.760000e-77 300
36 TraesCS6B01G213000 chr5A 91.463 410 30 2 1886 2294 44301912 44302317 2.630000e-155 558
37 TraesCS6B01G213000 chr5A 89.796 147 12 1 1802 1945 626613917 626614063 5.140000e-43 185
38 TraesCS6B01G213000 chr6A 91.041 413 32 2 2608 3020 214198837 214199244 1.220000e-153 553
39 TraesCS6B01G213000 chr6A 90.312 320 16 9 2295 2612 214194922 214195228 3.630000e-109 405
40 TraesCS6B01G213000 chr3B 89.750 400 32 4 1895 2294 737896770 737896380 1.250000e-138 503
41 TraesCS6B01G213000 chr3B 90.476 294 25 1 613 906 737896551 737896261 4.720000e-103 385
42 TraesCS6B01G213000 chr3B 87.119 295 35 1 613 907 737897386 737897095 6.240000e-87 331
43 TraesCS6B01G213000 chr6D 89.894 376 36 2 2645 3020 157654354 157653981 1.630000e-132 483
44 TraesCS6B01G213000 chr6D 92.593 108 6 1 2295 2400 157657525 157657418 1.450000e-33 154
45 TraesCS6B01G213000 chr3A 91.608 143 9 1 1806 1945 571837856 571837998 8.540000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G213000 chr6B 286710940 286713959 3019 True 2913.000000 5578 96.28550 1 3020 2 chr6B.!!$R1 3019
1 TraesCS6B01G213000 chr6B 307446742 307447374 632 False 654.000000 654 85.40000 769 1401 1 chr6B.!!$F1 632
2 TraesCS6B01G213000 chr1B 415110311 415111303 992 False 1266.000000 1266 89.87000 917 1899 1 chr1B.!!$F1 982
3 TraesCS6B01G213000 chr1B 321115994 321116605 611 True 845.000000 845 91.58600 1 614 1 chr1B.!!$R1 613
4 TraesCS6B01G213000 chr1B 347777008 347779216 2208 False 734.750000 1310 91.94125 613 2295 4 chr1B.!!$F2 1682
5 TraesCS6B01G213000 chr7B 716498124 716499288 1164 True 1284.000000 1284 87.12700 908 2038 1 chr7B.!!$R2 1130
6 TraesCS6B01G213000 chr7B 716431797 716432768 971 False 1199.000000 1199 88.95600 916 1902 1 chr7B.!!$F1 986
7 TraesCS6B01G213000 chr7B 250962354 250963245 891 True 1112.000000 1112 89.26200 916 1804 1 chr7B.!!$R1 888
8 TraesCS6B01G213000 chr4B 527335018 527335926 908 True 1218.000000 1218 91.08900 908 1802 1 chr4B.!!$R1 894
9 TraesCS6B01G213000 chr4B 527344931 527345819 888 True 1120.000000 1120 89.56700 916 1802 1 chr4B.!!$R2 886
10 TraesCS6B01G213000 chr7A 13545031 13545943 912 True 1149.000000 1149 89.58800 915 1821 1 chr7A.!!$R1 906
11 TraesCS6B01G213000 chr7A 714968512 714969118 606 True 835.000000 835 91.47500 3 612 1 chr7A.!!$R2 609
12 TraesCS6B01G213000 chr2B 342797231 342798062 831 False 1024.000000 1024 88.95600 992 1819 1 chr2B.!!$F1 827
13 TraesCS6B01G213000 chr2B 512569204 512569813 609 True 846.000000 846 91.72100 1 612 1 chr2B.!!$R1 611
14 TraesCS6B01G213000 chr2B 795769809 795771353 1544 False 527.000000 800 92.91100 613 1172 2 chr2B.!!$F2 559
15 TraesCS6B01G213000 chr5B 692883901 692884787 886 True 979.000000 979 86.75500 772 1664 1 chr5B.!!$R1 892
16 TraesCS6B01G213000 chr4A 661960584 661961191 607 True 905.000000 905 93.47500 1 612 1 chr4A.!!$R1 611
17 TraesCS6B01G213000 chr4A 159804150 159804680 530 True 469.500000 569 90.63000 613 2294 2 chr4A.!!$R2 1681
18 TraesCS6B01G213000 chr5D 352830708 352831318 610 True 893.000000 893 93.04200 1 614 1 chr5D.!!$R2 613
19 TraesCS6B01G213000 chr5D 57018656 57019263 607 True 850.000000 850 91.85700 1 612 1 chr5D.!!$R1 611
20 TraesCS6B01G213000 chr2D 33991378 33991983 605 True 865.000000 865 92.34500 1 612 1 chr2D.!!$R1 611
21 TraesCS6B01G213000 chr2D 548730952 548731559 607 True 839.000000 839 91.54500 1 612 1 chr2D.!!$R2 611
22 TraesCS6B01G213000 chr2D 167765988 167766627 639 False 809.000000 809 89.70400 771 1402 1 chr2D.!!$F1 631
23 TraesCS6B01G213000 chr7D 80035570 80036177 607 False 854.000000 854 92.00700 3 612 1 chr7D.!!$F1 609
24 TraesCS6B01G213000 chr3D 547543622 547544151 529 True 499.500000 603 92.17150 613 2294 2 chr3D.!!$R1 1681
25 TraesCS6B01G213000 chr6A 214194922 214199244 4322 False 479.000000 553 90.67650 2295 3020 2 chr6A.!!$F1 725
26 TraesCS6B01G213000 chr3B 737896261 737897386 1125 True 406.333333 503 89.11500 613 2294 3 chr3B.!!$R1 1681
27 TraesCS6B01G213000 chr6D 157653981 157657525 3544 True 318.500000 483 91.24350 2295 3020 2 chr6D.!!$R1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 625 0.110869 CCCCGGTTTCCCAACACTAA 59.889 55.0 0.0 0.0 34.15 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2330 2794 0.033228 GCAGGTCGCAGATGCTAGAT 59.967 55.0 2.95 0.0 39.24 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 4.503123 CCGCACCATAGGTAGATCAAATCA 60.503 45.833 0.00 0.00 32.11 2.57
247 250 1.731700 CGGGATCGACGAAAGCCTA 59.268 57.895 0.00 0.00 39.00 3.93
249 252 0.458669 GGGATCGACGAAAGCCTACA 59.541 55.000 0.00 0.00 0.00 2.74
614 624 1.762471 CCCCGGTTTCCCAACACTA 59.238 57.895 0.00 0.00 34.15 2.74
615 625 0.110869 CCCCGGTTTCCCAACACTAA 59.889 55.000 0.00 0.00 34.15 2.24
616 626 1.241165 CCCGGTTTCCCAACACTAAC 58.759 55.000 0.00 0.00 34.15 2.34
617 627 1.202842 CCCGGTTTCCCAACACTAACT 60.203 52.381 0.00 0.00 34.15 2.24
618 628 2.038820 CCCGGTTTCCCAACACTAACTA 59.961 50.000 0.00 0.00 34.15 2.24
619 629 3.069289 CCGGTTTCCCAACACTAACTAC 58.931 50.000 0.00 0.00 34.15 2.73
620 630 2.733026 CGGTTTCCCAACACTAACTACG 59.267 50.000 0.00 0.00 34.15 3.51
621 631 3.069289 GGTTTCCCAACACTAACTACGG 58.931 50.000 0.00 0.00 34.15 4.02
622 632 3.494924 GGTTTCCCAACACTAACTACGGT 60.495 47.826 0.00 0.00 34.15 4.83
671 681 0.941463 CATGCGGGCTAGCTAACGAG 60.941 60.000 23.81 12.63 38.13 4.18
759 769 1.348250 CGCGCGCACATTAGTCATT 59.652 52.632 32.61 0.00 0.00 2.57
990 1000 3.532155 GCCGAGCTCCATCTCCGT 61.532 66.667 8.47 0.00 0.00 4.69
1003 1014 3.626680 CTCCGTCGGCGACACATGT 62.627 63.158 35.62 0.00 41.33 3.21
1007 1018 3.676605 TCGGCGACACATGTCCGT 61.677 61.111 19.59 6.10 41.86 4.69
1216 1236 1.579932 GAACTCGAGCACGGACTCA 59.420 57.895 13.61 0.00 40.21 3.41
1309 1457 1.539157 TCAATGCGCACCCATAACAA 58.461 45.000 14.90 0.00 0.00 2.83
1330 1478 4.100084 CCGGTCATGCTGGGCTCA 62.100 66.667 0.00 0.00 40.02 4.26
1804 2234 4.400251 ACCAAGCTCATGATACCAATTGTG 59.600 41.667 4.43 0.00 0.00 3.33
1822 2252 3.849002 GGGAACCGAAACCCTCTAC 57.151 57.895 0.00 0.00 40.86 2.59
1868 2302 2.370189 AGGTGGAAGAAGAACAGTGGAG 59.630 50.000 0.00 0.00 0.00 3.86
1873 2307 3.810386 GGAAGAAGAACAGTGGAGACAAC 59.190 47.826 0.00 0.00 46.06 3.32
2007 2469 3.731728 ACAGCATCCGGCCACCAT 61.732 61.111 2.24 0.00 46.50 3.55
2270 2732 3.993234 GCGCATCAGTCATCGCCG 61.993 66.667 0.30 0.00 41.53 6.46
2314 2776 2.451167 CGAGGTAGTCGTCTCGCGT 61.451 63.158 5.77 0.00 44.68 6.01
2330 2794 2.486504 GTCGCCGACGGACATGTA 59.513 61.111 20.50 0.00 40.63 2.29
2393 2857 0.032130 TGTTGCTCGACTGTCTGGAC 59.968 55.000 6.21 0.00 0.00 4.02
2423 2887 1.466025 CCACCATTGGCAAGCACAGT 61.466 55.000 5.96 0.00 35.56 3.55
2431 2895 1.227943 GCAAGCACAGTCCTCCACA 60.228 57.895 0.00 0.00 0.00 4.17
2448 2912 4.644103 CCACACATGGGAAATGATCTTC 57.356 45.455 0.00 0.00 43.04 2.87
2449 2913 4.275810 CCACACATGGGAAATGATCTTCT 58.724 43.478 0.00 0.00 43.04 2.85
2450 2914 4.708421 CCACACATGGGAAATGATCTTCTT 59.292 41.667 0.00 0.00 43.04 2.52
2451 2915 5.163581 CCACACATGGGAAATGATCTTCTTC 60.164 44.000 0.00 0.00 43.04 2.87
2453 2917 5.198965 CACATGGGAAATGATCTTCTTCCT 58.801 41.667 15.94 1.22 38.94 3.36
2454 2918 5.067413 CACATGGGAAATGATCTTCTTCCTG 59.933 44.000 15.94 11.72 38.94 3.86
2455 2919 3.624777 TGGGAAATGATCTTCTTCCTGC 58.375 45.455 15.94 6.00 38.94 4.85
2456 2920 3.010472 TGGGAAATGATCTTCTTCCTGCA 59.990 43.478 15.94 7.80 38.94 4.41
2457 2921 3.379688 GGGAAATGATCTTCTTCCTGCAC 59.620 47.826 15.94 2.23 38.94 4.57
2458 2922 3.379688 GGAAATGATCTTCTTCCTGCACC 59.620 47.826 11.56 0.00 36.48 5.01
2459 2923 4.268359 GAAATGATCTTCTTCCTGCACCT 58.732 43.478 0.00 0.00 0.00 4.00
2460 2924 2.775911 TGATCTTCTTCCTGCACCTG 57.224 50.000 0.00 0.00 0.00 4.00
2480 2944 0.887836 CTGCATGCCAGTGTGACTGT 60.888 55.000 16.68 0.00 44.50 3.55
2482 2946 0.886043 GCATGCCAGTGTGACTGTGA 60.886 55.000 6.36 0.00 44.50 3.58
2486 2950 1.502163 GCCAGTGTGACTGTGAGCAC 61.502 60.000 3.18 0.00 44.50 4.40
2487 2951 0.179076 CCAGTGTGACTGTGAGCACA 60.179 55.000 3.02 3.02 44.50 4.57
2489 2953 4.855105 TGTGACTGTGAGCACACC 57.145 55.556 11.92 0.00 45.40 4.16
2490 2954 1.904032 TGTGACTGTGAGCACACCA 59.096 52.632 11.92 0.00 45.40 4.17
2491 2955 0.179076 TGTGACTGTGAGCACACCAG 60.179 55.000 11.92 11.07 45.40 4.00
2492 2956 1.227645 TGACTGTGAGCACACCAGC 60.228 57.895 11.92 1.58 45.40 4.85
2507 2971 1.135094 CCAGCCACCAGGTATCTGAT 58.865 55.000 17.68 0.00 43.49 2.90
2520 2984 1.620739 ATCTGATGGTGTGCCTCGCT 61.621 55.000 0.00 0.00 35.27 4.93
2546 3010 2.101415 CCATCCACGCTCTCTACATCAA 59.899 50.000 0.00 0.00 0.00 2.57
2627 8546 4.203245 GCATTGCTATGGCCCCAT 57.797 55.556 10.18 5.01 40.19 4.00
2628 8547 1.669440 GCATTGCTATGGCCCCATG 59.331 57.895 10.02 0.00 37.82 3.66
2707 8626 2.627221 TCTGCTGGAGATAGATGCTGTC 59.373 50.000 0.00 0.00 0.00 3.51
2728 8647 1.745141 GCTGAGCCGGACATTCTTGAT 60.745 52.381 5.05 0.00 0.00 2.57
2729 8648 1.938577 CTGAGCCGGACATTCTTGATG 59.061 52.381 5.05 0.00 41.71 3.07
2745 8664 5.371526 TCTTGATGTCCAATCTATGCTTCC 58.628 41.667 0.00 0.00 33.68 3.46
2746 8665 3.732212 TGATGTCCAATCTATGCTTCCG 58.268 45.455 0.00 0.00 0.00 4.30
2747 8666 1.953559 TGTCCAATCTATGCTTCCGC 58.046 50.000 0.00 0.00 0.00 5.54
2748 8667 0.861837 GTCCAATCTATGCTTCCGCG 59.138 55.000 0.00 0.00 39.65 6.46
2792 8711 1.794151 TTGTTGCCATGGTCTGCACG 61.794 55.000 14.67 0.00 37.18 5.34
2798 8717 3.640407 ATGGTCTGCACGGCCACT 61.640 61.111 11.01 0.44 34.84 4.00
2804 8723 2.904866 TGCACGGCCACTGGTTTC 60.905 61.111 2.24 0.00 0.00 2.78
2807 8726 1.966451 CACGGCCACTGGTTTCTCC 60.966 63.158 2.24 0.00 0.00 3.71
2819 8738 0.321653 GTTTCTCCGACCACATGGCT 60.322 55.000 0.00 0.00 39.32 4.75
2822 8741 1.448540 CTCCGACCACATGGCTGTC 60.449 63.158 0.00 0.00 39.32 3.51
2835 8754 1.003118 TGGCTGTCGAATACCTTTGCT 59.997 47.619 0.00 0.00 0.00 3.91
2837 8756 2.866762 GGCTGTCGAATACCTTTGCTAG 59.133 50.000 0.00 0.00 0.00 3.42
2894 8813 2.859165 CCAAGGAGGTGTGCTAGAAA 57.141 50.000 0.00 0.00 0.00 2.52
2912 8831 2.660189 AAGCATATGTTTGTGCAGGC 57.340 45.000 3.76 0.00 42.00 4.85
2921 8840 4.980702 TGTGCAGGCCAAGCTGGG 62.981 66.667 19.26 1.30 38.19 4.45
2923 8842 3.900862 TGCAGGCCAAGCTGGGAA 61.901 61.111 12.85 0.00 38.19 3.97
2997 8916 0.035056 CCCTAAAGACACCCTGCTGG 60.035 60.000 1.89 1.89 41.37 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 9.072294 CCGTTTTTGCGATTAGATTATTTTTCT 57.928 29.630 0.00 0.00 0.00 2.52
247 250 2.102438 CGTCACGCCTGCATCATGT 61.102 57.895 0.00 0.00 0.00 3.21
425 431 8.055181 TCATTGATTAATAAAGCTGGTCTCCTT 58.945 33.333 0.00 0.00 0.00 3.36
504 512 9.504705 TTTATGTTAAGTGGGTACTTATCCCTA 57.495 33.333 2.65 0.00 45.93 3.53
526 534 1.283905 CTCCCGTTTCCCCCACTTTAT 59.716 52.381 0.00 0.00 0.00 1.40
577 586 2.501128 CATCTCGATGGTGGCGGT 59.499 61.111 0.00 0.00 35.24 5.68
586 596 2.325393 GAAACCGGGGCCATCTCGAT 62.325 60.000 6.32 0.00 0.00 3.59
590 600 3.739613 GGGAAACCGGGGCCATCT 61.740 66.667 6.32 0.00 43.64 2.90
614 624 2.663852 GCGTGCACCACCGTAGTT 60.664 61.111 12.15 0.00 0.00 2.24
639 649 4.115199 GCATGGCCGGGTCTCCTT 62.115 66.667 2.18 0.00 0.00 3.36
759 769 0.035739 GTAAACCACTTCTCGGGGCA 59.964 55.000 0.00 0.00 0.00 5.36
819 829 4.054780 TGACGAAAGCTACAACAACTCT 57.945 40.909 0.00 0.00 0.00 3.24
912 922 4.988598 AGTGCGCCAGGTCGGTTG 62.989 66.667 4.18 0.00 36.97 3.77
990 1000 3.620300 GACGGACATGTGTCGCCGA 62.620 63.158 25.39 0.00 45.65 5.54
1216 1236 1.623081 CGTATGTCGCCGTTGTGCTT 61.623 55.000 0.00 0.00 0.00 3.91
1370 1520 3.848301 ATGGAGGTGTTGCGCTGCA 62.848 57.895 9.73 4.43 36.47 4.41
1804 2234 0.251354 GGTAGAGGGTTTCGGTTCCC 59.749 60.000 0.00 0.00 43.71 3.97
1812 2242 2.934511 AGGAGAGGTAGGTAGAGGGTTT 59.065 50.000 0.00 0.00 0.00 3.27
1814 2244 2.137702 GAGGAGAGGTAGGTAGAGGGT 58.862 57.143 0.00 0.00 0.00 4.34
1822 2252 1.487142 TCGAGTGAGAGGAGAGGTAGG 59.513 57.143 0.00 0.00 0.00 3.18
1868 2302 1.211709 CCGGCCGGAAAATGTTGTC 59.788 57.895 41.82 0.00 37.50 3.18
2007 2469 1.597797 CGTGGAGTTAGTGGCCGGTA 61.598 60.000 1.90 0.00 0.00 4.02
2145 2607 3.866582 CATGGCCGGGTCTCCTCC 61.867 72.222 2.18 0.00 0.00 4.30
2250 2712 3.009140 CGATGACTGATGCGCACC 58.991 61.111 14.90 1.73 0.00 5.01
2255 2717 3.993234 CGCGGCGATGACTGATGC 61.993 66.667 19.16 0.00 0.00 3.91
2270 2732 1.001633 TGGGAGTAAACCACTTCTCGC 59.998 52.381 0.00 0.00 37.72 5.03
2314 2776 1.099295 AGATACATGTCCGTCGGCGA 61.099 55.000 12.93 4.99 41.33 5.54
2320 2782 3.305676 GCAGATGCTAGATACATGTCCGT 60.306 47.826 0.00 0.00 38.21 4.69
2321 2783 3.249091 GCAGATGCTAGATACATGTCCG 58.751 50.000 0.00 0.00 38.21 4.79
2330 2794 0.033228 GCAGGTCGCAGATGCTAGAT 59.967 55.000 2.95 0.00 39.24 1.98
2431 2895 5.198965 CAGGAAGAAGATCATTTCCCATGT 58.801 41.667 15.31 0.27 41.00 3.21
2440 2904 2.683152 GCAGGTGCAGGAAGAAGATCAT 60.683 50.000 0.00 0.00 41.59 2.45
2441 2905 1.339438 GCAGGTGCAGGAAGAAGATCA 60.339 52.381 0.00 0.00 41.59 2.92
2444 2908 0.035881 CAGCAGGTGCAGGAAGAAGA 59.964 55.000 4.48 0.00 45.16 2.87
2446 2910 4.806936 CAGCAGGTGCAGGAAGAA 57.193 55.556 4.48 0.00 45.16 2.52
2460 2924 1.970114 AGTCACACTGGCATGCAGC 60.970 57.895 21.36 3.15 44.65 5.25
2480 2944 3.480679 CTGGTGGCTGGTGTGCTCA 62.481 63.158 0.00 0.00 0.00 4.26
2482 2946 4.275508 CCTGGTGGCTGGTGTGCT 62.276 66.667 0.00 0.00 0.00 4.40
2486 2950 0.107508 CAGATACCTGGTGGCTGGTG 60.108 60.000 10.23 0.00 37.74 4.17
2487 2951 0.252696 TCAGATACCTGGTGGCTGGT 60.253 55.000 22.40 0.00 40.76 4.00
2488 2952 1.135094 ATCAGATACCTGGTGGCTGG 58.865 55.000 22.40 10.35 40.76 4.85
2489 2953 2.251409 CATCAGATACCTGGTGGCTG 57.749 55.000 18.95 18.95 45.52 4.85
2507 2971 3.545574 TGTCAGCGAGGCACACCA 61.546 61.111 0.00 0.00 39.06 4.17
2520 2984 0.900182 AGAGAGCGTGGATGGTGTCA 60.900 55.000 0.00 0.00 32.58 3.58
2625 8544 2.045045 ACACGGGGTCCATGCATG 60.045 61.111 20.19 20.19 0.00 4.06
2626 8545 2.272146 GACACGGGGTCCATGCAT 59.728 61.111 0.00 0.00 40.83 3.96
2707 8626 1.448540 AAGAATGTCCGGCTCAGCG 60.449 57.895 0.00 0.00 0.00 5.18
2748 8667 4.083862 GAGGGAGCGGACCACCAC 62.084 72.222 0.00 0.00 35.59 4.16
2792 8711 1.671379 GTCGGAGAAACCAGTGGCC 60.671 63.158 9.78 0.00 39.69 5.36
2798 8717 0.036164 CCATGTGGTCGGAGAAACCA 59.964 55.000 0.00 0.00 44.46 3.67
2804 8723 1.448540 GACAGCCATGTGGTCGGAG 60.449 63.158 0.35 0.00 40.68 4.63
2819 8738 4.181578 GCTTCTAGCAAAGGTATTCGACA 58.818 43.478 0.00 0.00 41.89 4.35
2835 8754 7.055667 CCTTAGATAGGTCACATTGCTTCTA 57.944 40.000 0.00 0.00 39.39 2.10
2864 8783 1.318158 CCTCCTTGGTTGCCATCTGC 61.318 60.000 0.00 0.00 41.77 4.26
2876 8795 2.079925 GCTTTCTAGCACACCTCCTTG 58.920 52.381 0.00 0.00 46.95 3.61
2891 8810 2.925563 GCCTGCACAAACATATGCTTTC 59.074 45.455 1.58 0.00 42.55 2.62
2894 8813 0.819582 GGCCTGCACAAACATATGCT 59.180 50.000 1.58 0.00 42.55 3.79
2897 8816 1.205417 GCTTGGCCTGCACAAACATAT 59.795 47.619 14.81 0.00 0.00 1.78
2905 8824 4.666253 TCCCAGCTTGGCCTGCAC 62.666 66.667 20.23 1.25 35.79 4.57
2921 8840 3.520187 CAAATGCTTGGGGTGCTTC 57.480 52.632 0.00 0.00 0.00 3.86
2933 8852 2.596904 ATGATGCAAGCTCCAAATGC 57.403 45.000 0.21 0.21 40.45 3.56
2949 8868 5.114764 TCAGCCATGGACATAAGAAATGA 57.885 39.130 18.40 1.51 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.