Multiple sequence alignment - TraesCS6B01G212700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G212700 | chr6B | 100.000 | 4880 | 0 | 0 | 809 | 5688 | 281232957 | 281237836 | 0.000000e+00 | 9012 |
1 | TraesCS6B01G212700 | chr6B | 95.809 | 692 | 15 | 8 | 5004 | 5688 | 281237897 | 281237213 | 0.000000e+00 | 1105 |
2 | TraesCS6B01G212700 | chr6B | 100.000 | 382 | 0 | 0 | 1 | 382 | 281232149 | 281232530 | 0.000000e+00 | 706 |
3 | TraesCS6B01G212700 | chr6B | 95.726 | 351 | 15 | 0 | 5000 | 5350 | 530574808 | 530575158 | 2.970000e-157 | 566 |
4 | TraesCS6B01G212700 | chr6B | 95.625 | 320 | 14 | 0 | 5369 | 5688 | 530575192 | 530574873 | 1.090000e-141 | 514 |
5 | TraesCS6B01G212700 | chr6B | 97.500 | 120 | 3 | 0 | 4114 | 4233 | 267021893 | 267021774 | 7.470000e-49 | 206 |
6 | TraesCS6B01G212700 | chr6D | 95.062 | 3321 | 147 | 10 | 809 | 4118 | 157590401 | 157593715 | 0.000000e+00 | 5208 |
7 | TraesCS6B01G212700 | chr6D | 95.021 | 723 | 30 | 4 | 4231 | 4949 | 157593713 | 157594433 | 0.000000e+00 | 1131 |
8 | TraesCS6B01G212700 | chr6D | 95.101 | 347 | 17 | 0 | 5004 | 5350 | 335395578 | 335395924 | 1.080000e-151 | 547 |
9 | TraesCS6B01G212700 | chr6D | 94.340 | 318 | 18 | 0 | 5371 | 5688 | 335395956 | 335395639 | 6.620000e-134 | 488 |
10 | TraesCS6B01G212700 | chr6D | 92.991 | 214 | 7 | 3 | 176 | 382 | 157590163 | 157590375 | 7.160000e-79 | 305 |
11 | TraesCS6B01G212700 | chr6D | 95.652 | 184 | 6 | 2 | 1 | 182 | 157589292 | 157589475 | 1.550000e-75 | 294 |
12 | TraesCS6B01G212700 | chr6A | 94.944 | 3323 | 145 | 11 | 810 | 4118 | 214563255 | 214559942 | 0.000000e+00 | 5184 |
13 | TraesCS6B01G212700 | chr6A | 97.736 | 530 | 7 | 4 | 4231 | 4755 | 214559944 | 214559415 | 0.000000e+00 | 907 |
14 | TraesCS6B01G212700 | chr6A | 94.650 | 243 | 10 | 3 | 1 | 240 | 214563627 | 214563385 | 1.940000e-99 | 374 |
15 | TraesCS6B01G212700 | chr6A | 88.841 | 233 | 22 | 3 | 4763 | 4993 | 214559328 | 214559098 | 3.350000e-72 | 283 |
16 | TraesCS6B01G212700 | chr7A | 99.713 | 349 | 1 | 0 | 5002 | 5350 | 206924880 | 206925228 | 1.730000e-179 | 640 |
17 | TraesCS6B01G212700 | chr7A | 99.688 | 320 | 1 | 0 | 5369 | 5688 | 206925262 | 206924943 | 2.280000e-163 | 586 |
18 | TraesCS6B01G212700 | chr7A | 91.954 | 348 | 26 | 2 | 5004 | 5350 | 145390404 | 145390750 | 2.380000e-133 | 486 |
19 | TraesCS6B01G212700 | chr7A | 90.654 | 321 | 28 | 2 | 5369 | 5688 | 145390784 | 145390465 | 5.270000e-115 | 425 |
20 | TraesCS6B01G212700 | chr5D | 99.712 | 347 | 1 | 0 | 5004 | 5350 | 520350676 | 520351022 | 2.240000e-178 | 636 |
21 | TraesCS6B01G212700 | chr5D | 99.688 | 320 | 1 | 0 | 5369 | 5688 | 520351056 | 520350737 | 2.280000e-163 | 586 |
22 | TraesCS6B01G212700 | chr5D | 96.721 | 122 | 4 | 0 | 4116 | 4237 | 420228166 | 420228287 | 2.690000e-48 | 204 |
23 | TraesCS6B01G212700 | chr5D | 94.531 | 128 | 5 | 2 | 4107 | 4233 | 566048414 | 566048288 | 4.500000e-46 | 196 |
24 | TraesCS6B01G212700 | chr3D | 96.910 | 356 | 10 | 1 | 4995 | 5350 | 47752292 | 47752646 | 3.790000e-166 | 595 |
25 | TraesCS6B01G212700 | chr3D | 93.103 | 348 | 23 | 1 | 5004 | 5350 | 172223571 | 172223224 | 5.080000e-140 | 508 |
26 | TraesCS6B01G212700 | chr3D | 97.288 | 295 | 7 | 1 | 5394 | 5688 | 47752655 | 47752362 | 3.060000e-137 | 499 |
27 | TraesCS6B01G212700 | chr3D | 91.562 | 320 | 27 | 0 | 5369 | 5688 | 172223190 | 172223509 | 5.230000e-120 | 442 |
28 | TraesCS6B01G212700 | chr7D | 94.236 | 347 | 20 | 0 | 5004 | 5350 | 246148441 | 246148787 | 1.090000e-146 | 531 |
29 | TraesCS6B01G212700 | chr7D | 93.949 | 314 | 19 | 0 | 5375 | 5688 | 246148815 | 246148502 | 5.160000e-130 | 475 |
30 | TraesCS6B01G212700 | chr4D | 97.521 | 121 | 3 | 0 | 4116 | 4236 | 234179259 | 234179139 | 2.080000e-49 | 207 |
31 | TraesCS6B01G212700 | chr5B | 97.500 | 120 | 3 | 0 | 4114 | 4233 | 79817995 | 79817876 | 7.470000e-49 | 206 |
32 | TraesCS6B01G212700 | chr5B | 96.721 | 122 | 4 | 0 | 4112 | 4233 | 70795776 | 70795655 | 2.690000e-48 | 204 |
33 | TraesCS6B01G212700 | chr1B | 96.748 | 123 | 4 | 0 | 4117 | 4239 | 389309873 | 389309751 | 7.470000e-49 | 206 |
34 | TraesCS6B01G212700 | chr3B | 94.574 | 129 | 5 | 2 | 4117 | 4245 | 50423441 | 50423315 | 1.250000e-46 | 198 |
35 | TraesCS6B01G212700 | chr3B | 92.254 | 142 | 7 | 4 | 4097 | 4236 | 52921905 | 52922044 | 1.250000e-46 | 198 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G212700 | chr6B | 281232149 | 281237836 | 5687 | False | 4859.0 | 9012 | 100.00000 | 1 | 5688 | 2 | chr6B.!!$F2 | 5687 |
1 | TraesCS6B01G212700 | chr6B | 281237213 | 281237897 | 684 | True | 1105.0 | 1105 | 95.80900 | 5004 | 5688 | 1 | chr6B.!!$R2 | 684 |
2 | TraesCS6B01G212700 | chr6D | 157589292 | 157594433 | 5141 | False | 1734.5 | 5208 | 94.68150 | 1 | 4949 | 4 | chr6D.!!$F2 | 4948 |
3 | TraesCS6B01G212700 | chr6A | 214559098 | 214563627 | 4529 | True | 1687.0 | 5184 | 94.04275 | 1 | 4993 | 4 | chr6A.!!$R1 | 4992 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
890 | 1596 | 0.321653 | ACACTCACCCGAGCCAAATC | 60.322 | 55.0 | 0.00 | 0.00 | 43.66 | 2.17 | F |
1603 | 2323 | 0.036577 | CCAGAACAGGCTCACAGGAG | 60.037 | 60.0 | 0.00 | 0.00 | 44.33 | 3.69 | F |
1887 | 2607 | 0.843309 | TGGAAGACAACAGCCTTGGA | 59.157 | 50.0 | 0.00 | 0.00 | 0.00 | 3.53 | F |
3162 | 3882 | 0.537188 | GCATTCCTGAGTTCCTCGGA | 59.463 | 55.0 | 1.62 | 1.96 | 39.05 | 4.55 | F |
4132 | 4852 | 0.251297 | TTGTACTTCCTCCGTCCGGA | 60.251 | 55.0 | 0.00 | 0.00 | 42.90 | 5.14 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1887 | 2607 | 0.332972 | GCCAAGAAGGGATGGTTCCT | 59.667 | 55.000 | 0.00 | 0.00 | 42.20 | 3.36 | R |
2430 | 3150 | 0.533531 | TGCTGCAGTTGGTCAGACTG | 60.534 | 55.000 | 16.64 | 0.00 | 45.64 | 3.51 | R |
3279 | 3999 | 0.625849 | GTTGAGGGATCCCACCACAT | 59.374 | 55.000 | 32.69 | 10.96 | 38.92 | 3.21 | R |
4201 | 4921 | 0.030369 | CCGGAAATACTCGTCGGAGG | 59.970 | 60.000 | 0.00 | 0.00 | 44.93 | 4.30 | R |
4961 | 5767 | 1.071228 | TCCGCATCCTTCAGATCCATG | 59.929 | 52.381 | 0.00 | 0.00 | 30.59 | 3.66 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
302 | 1007 | 1.003545 | CCGCCAGCTTTTCATATCACG | 60.004 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
355 | 1060 | 2.817258 | AGTCCTCAGAGAGACGAAACAG | 59.183 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
833 | 1538 | 2.726912 | GCCAAACGACGACGACGA | 60.727 | 61.111 | 25.15 | 0.00 | 42.66 | 4.20 |
834 | 1539 | 2.980563 | GCCAAACGACGACGACGAC | 61.981 | 63.158 | 25.15 | 7.02 | 42.66 | 4.34 |
890 | 1596 | 0.321653 | ACACTCACCCGAGCCAAATC | 60.322 | 55.000 | 0.00 | 0.00 | 43.66 | 2.17 |
891 | 1597 | 1.026718 | CACTCACCCGAGCCAAATCC | 61.027 | 60.000 | 0.00 | 0.00 | 43.66 | 3.01 |
898 | 1604 | 1.414158 | CCGAGCCAAATCCCTCTCTA | 58.586 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
900 | 1606 | 2.370189 | CCGAGCCAAATCCCTCTCTATT | 59.630 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
901 | 1607 | 3.578716 | CCGAGCCAAATCCCTCTCTATTA | 59.421 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
902 | 1608 | 4.223923 | CCGAGCCAAATCCCTCTCTATTAT | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
903 | 1609 | 5.422331 | CCGAGCCAAATCCCTCTCTATTATA | 59.578 | 44.000 | 0.00 | 0.00 | 0.00 | 0.98 |
904 | 1610 | 6.070767 | CCGAGCCAAATCCCTCTCTATTATAA | 60.071 | 42.308 | 0.00 | 0.00 | 0.00 | 0.98 |
905 | 1611 | 7.386851 | CGAGCCAAATCCCTCTCTATTATAAA | 58.613 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
906 | 1612 | 8.043710 | CGAGCCAAATCCCTCTCTATTATAAAT | 58.956 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
919 | 1625 | 9.352191 | TCTCTATTATAAATATACCTCTCCCGC | 57.648 | 37.037 | 0.00 | 0.00 | 0.00 | 6.13 |
920 | 1626 | 9.132923 | CTCTATTATAAATATACCTCTCCCGCA | 57.867 | 37.037 | 0.00 | 0.00 | 0.00 | 5.69 |
923 | 1634 | 1.700955 | AATATACCTCTCCCGCACGT | 58.299 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
942 | 1653 | 1.381165 | TACGTATGCTCTCTGCCGCA | 61.381 | 55.000 | 0.00 | 0.00 | 42.00 | 5.69 |
1008 | 1725 | 3.784719 | GGGGCGGCAATGGCAATT | 61.785 | 61.111 | 12.47 | 0.00 | 43.71 | 2.32 |
1153 | 1870 | 2.811317 | CCTTCAGGTCGCTCGTGC | 60.811 | 66.667 | 0.00 | 0.00 | 32.68 | 5.34 |
1603 | 2323 | 0.036577 | CCAGAACAGGCTCACAGGAG | 60.037 | 60.000 | 0.00 | 0.00 | 44.33 | 3.69 |
1618 | 2338 | 3.797353 | GAGGCATCCCTTCCGGCA | 61.797 | 66.667 | 0.00 | 0.00 | 43.12 | 5.69 |
1879 | 2599 | 1.879380 | CGCTCCATTTGGAAGACAACA | 59.121 | 47.619 | 0.18 | 0.00 | 44.91 | 3.33 |
1880 | 2600 | 2.095567 | CGCTCCATTTGGAAGACAACAG | 60.096 | 50.000 | 0.18 | 0.00 | 44.91 | 3.16 |
1884 | 2604 | 2.629617 | CCATTTGGAAGACAACAGCCTT | 59.370 | 45.455 | 0.00 | 0.00 | 39.19 | 4.35 |
1887 | 2607 | 0.843309 | TGGAAGACAACAGCCTTGGA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1950 | 2670 | 3.418684 | TCCTTAAACCTCCAGAGCAAC | 57.581 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
2086 | 2806 | 1.480954 | CCCTCGCTGAGCTTTACCTAA | 59.519 | 52.381 | 1.78 | 0.00 | 0.00 | 2.69 |
2124 | 2844 | 1.835927 | GCCCTCTGCCACTCTCAGTT | 61.836 | 60.000 | 0.00 | 0.00 | 33.48 | 3.16 |
2139 | 2859 | 3.325135 | TCTCAGTTTTCAACCTCTCCTCC | 59.675 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2289 | 3009 | 1.317431 | TGTGCAATGCCTCCATGCTC | 61.317 | 55.000 | 1.53 | 0.00 | 0.00 | 4.26 |
2428 | 3148 | 1.755783 | GCTGAATGGGGCTTCCTGG | 60.756 | 63.158 | 0.00 | 0.00 | 36.20 | 4.45 |
2460 | 3180 | 6.080648 | ACCAACTGCAGCAATATGATATTG | 57.919 | 37.500 | 18.42 | 18.42 | 0.00 | 1.90 |
2578 | 3298 | 4.800914 | GCATAGCAGGGACGATAACTGAAT | 60.801 | 45.833 | 0.00 | 0.00 | 34.21 | 2.57 |
2666 | 3386 | 0.933796 | GCATCTCTCGGCAAGCTTAC | 59.066 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2910 | 3630 | 3.551890 | CGAGTACCATGTATCTTGCACAC | 59.448 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
2973 | 3693 | 5.186021 | TCTCAGGAATCTAGGTGAACTTGAC | 59.814 | 44.000 | 0.00 | 0.00 | 33.84 | 3.18 |
2991 | 3711 | 6.815089 | ACTTGACCTCTCTGACAATATGATC | 58.185 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3072 | 3792 | 1.601419 | GGAACCATCTCGACGGGACA | 61.601 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3162 | 3882 | 0.537188 | GCATTCCTGAGTTCCTCGGA | 59.463 | 55.000 | 1.62 | 1.96 | 39.05 | 4.55 |
3223 | 3943 | 3.568007 | TGATTTTGAAGGTGAAGTTCCGG | 59.432 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
3272 | 3992 | 3.221771 | CAACCTCAGTCATGGGAAACAA | 58.778 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3279 | 3999 | 4.019411 | TCAGTCATGGGAAACAATGCTCTA | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
3424 | 4144 | 7.148983 | CCGCAATGTTTGTGTTATGTAAAAGAG | 60.149 | 37.037 | 0.72 | 0.00 | 39.46 | 2.85 |
3428 | 4148 | 6.734137 | TGTTTGTGTTATGTAAAAGAGGCAG | 58.266 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3477 | 4197 | 5.440610 | ACTCTCCCCAATGACAAATACATC | 58.559 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3727 | 4447 | 8.537016 | AGGTTATAACAGTGTGCTCAAGTATTA | 58.463 | 33.333 | 17.16 | 0.00 | 0.00 | 0.98 |
3732 | 4452 | 5.238583 | ACAGTGTGCTCAAGTATTAACTCC | 58.761 | 41.667 | 0.00 | 0.00 | 33.75 | 3.85 |
3734 | 4454 | 4.286032 | AGTGTGCTCAAGTATTAACTCCCA | 59.714 | 41.667 | 0.00 | 0.00 | 33.75 | 4.37 |
3822 | 4542 | 5.221601 | ACACAAGCATATCGAGGAAGATGAT | 60.222 | 40.000 | 0.00 | 0.00 | 32.39 | 2.45 |
3841 | 4561 | 4.711399 | TGATGAACCCAAGATGCTAGATG | 58.289 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3949 | 4669 | 3.876914 | CGACCTCAAGCCAAGCAATATTA | 59.123 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
3961 | 4681 | 5.333339 | CCAAGCAATATTATCCTCGACAACG | 60.333 | 44.000 | 0.00 | 0.00 | 41.26 | 4.10 |
4089 | 4809 | 0.323360 | TTGGTTATGTGGCTCCAGGC | 60.323 | 55.000 | 0.00 | 0.00 | 41.50 | 4.85 |
4115 | 4835 | 8.910666 | CGAGCATAATTCTACTCTCAACTATTG | 58.089 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
4116 | 4836 | 9.757227 | GAGCATAATTCTACTCTCAACTATTGT | 57.243 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4123 | 4843 | 8.880991 | TTCTACTCTCAACTATTGTACTTCCT | 57.119 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
4124 | 4844 | 8.508883 | TCTACTCTCAACTATTGTACTTCCTC | 57.491 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
4125 | 4845 | 6.532988 | ACTCTCAACTATTGTACTTCCTCC | 57.467 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4126 | 4846 | 5.125739 | ACTCTCAACTATTGTACTTCCTCCG | 59.874 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4127 | 4847 | 5.014858 | TCTCAACTATTGTACTTCCTCCGT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
4128 | 4848 | 5.125097 | TCTCAACTATTGTACTTCCTCCGTC | 59.875 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4129 | 4849 | 4.159135 | TCAACTATTGTACTTCCTCCGTCC | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4130 | 4850 | 2.686915 | ACTATTGTACTTCCTCCGTCCG | 59.313 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4131 | 4851 | 0.822164 | ATTGTACTTCCTCCGTCCGG | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4132 | 4852 | 0.251297 | TTGTACTTCCTCCGTCCGGA | 60.251 | 55.000 | 0.00 | 0.00 | 42.90 | 5.14 |
4133 | 4853 | 0.251297 | TGTACTTCCTCCGTCCGGAA | 60.251 | 55.000 | 5.23 | 0.00 | 44.66 | 4.30 |
4134 | 4854 | 0.890683 | GTACTTCCTCCGTCCGGAAA | 59.109 | 55.000 | 5.23 | 1.47 | 44.66 | 3.13 |
4135 | 4855 | 1.479730 | GTACTTCCTCCGTCCGGAAAT | 59.520 | 52.381 | 5.23 | 0.00 | 44.66 | 2.17 |
4136 | 4856 | 1.856629 | ACTTCCTCCGTCCGGAAATA | 58.143 | 50.000 | 5.23 | 0.00 | 44.66 | 1.40 |
4137 | 4857 | 1.479730 | ACTTCCTCCGTCCGGAAATAC | 59.520 | 52.381 | 5.23 | 0.00 | 44.66 | 1.89 |
4138 | 4858 | 1.755380 | CTTCCTCCGTCCGGAAATACT | 59.245 | 52.381 | 5.23 | 0.00 | 44.66 | 2.12 |
4139 | 4859 | 1.856629 | TCCTCCGTCCGGAAATACTT | 58.143 | 50.000 | 5.23 | 0.00 | 44.66 | 2.24 |
4140 | 4860 | 1.479323 | TCCTCCGTCCGGAAATACTTG | 59.521 | 52.381 | 5.23 | 0.00 | 44.66 | 3.16 |
4141 | 4861 | 1.206371 | CCTCCGTCCGGAAATACTTGT | 59.794 | 52.381 | 5.23 | 0.00 | 44.66 | 3.16 |
4142 | 4862 | 2.537401 | CTCCGTCCGGAAATACTTGTC | 58.463 | 52.381 | 5.23 | 0.00 | 44.66 | 3.18 |
4143 | 4863 | 1.135315 | TCCGTCCGGAAATACTTGTCG | 60.135 | 52.381 | 5.23 | 1.25 | 42.05 | 4.35 |
4144 | 4864 | 1.135315 | CCGTCCGGAAATACTTGTCGA | 60.135 | 52.381 | 5.23 | 0.00 | 37.50 | 4.20 |
4145 | 4865 | 2.598589 | CGTCCGGAAATACTTGTCGAA | 58.401 | 47.619 | 5.23 | 0.00 | 0.00 | 3.71 |
4146 | 4866 | 2.597305 | CGTCCGGAAATACTTGTCGAAG | 59.403 | 50.000 | 5.23 | 0.00 | 35.07 | 3.79 |
4147 | 4867 | 3.671433 | CGTCCGGAAATACTTGTCGAAGA | 60.671 | 47.826 | 5.23 | 0.00 | 32.98 | 2.87 |
4148 | 4868 | 4.240096 | GTCCGGAAATACTTGTCGAAGAA | 58.760 | 43.478 | 5.23 | 0.00 | 39.69 | 2.52 |
4149 | 4869 | 4.687483 | GTCCGGAAATACTTGTCGAAGAAA | 59.313 | 41.667 | 5.23 | 0.00 | 39.69 | 2.52 |
4150 | 4870 | 5.350640 | GTCCGGAAATACTTGTCGAAGAAAT | 59.649 | 40.000 | 5.23 | 0.00 | 39.69 | 2.17 |
4151 | 4871 | 5.350365 | TCCGGAAATACTTGTCGAAGAAATG | 59.650 | 40.000 | 0.00 | 0.00 | 39.69 | 2.32 |
4152 | 4872 | 5.022021 | CGGAAATACTTGTCGAAGAAATGC | 58.978 | 41.667 | 0.00 | 0.00 | 39.69 | 3.56 |
4153 | 4873 | 5.390461 | CGGAAATACTTGTCGAAGAAATGCA | 60.390 | 40.000 | 0.00 | 0.00 | 39.69 | 3.96 |
4154 | 4874 | 6.555315 | GGAAATACTTGTCGAAGAAATGCAT | 58.445 | 36.000 | 0.00 | 0.00 | 39.69 | 3.96 |
4155 | 4875 | 7.465379 | CGGAAATACTTGTCGAAGAAATGCATA | 60.465 | 37.037 | 0.00 | 0.00 | 39.69 | 3.14 |
4156 | 4876 | 8.181573 | GGAAATACTTGTCGAAGAAATGCATAA | 58.818 | 33.333 | 0.00 | 0.00 | 39.69 | 1.90 |
4157 | 4877 | 9.554724 | GAAATACTTGTCGAAGAAATGCATAAA | 57.445 | 29.630 | 0.00 | 0.00 | 39.69 | 1.40 |
4158 | 4878 | 9.906660 | AAATACTTGTCGAAGAAATGCATAAAA | 57.093 | 25.926 | 0.00 | 0.00 | 39.69 | 1.52 |
4159 | 4879 | 9.906660 | AATACTTGTCGAAGAAATGCATAAAAA | 57.093 | 25.926 | 0.00 | 0.00 | 39.69 | 1.94 |
4161 | 4881 | 8.231304 | ACTTGTCGAAGAAATGCATAAAAATG | 57.769 | 30.769 | 0.00 | 0.00 | 39.69 | 2.32 |
4162 | 4882 | 8.081633 | ACTTGTCGAAGAAATGCATAAAAATGA | 58.918 | 29.630 | 0.00 | 0.00 | 39.69 | 2.57 |
4163 | 4883 | 8.809159 | TTGTCGAAGAAATGCATAAAAATGAA | 57.191 | 26.923 | 0.00 | 0.00 | 39.69 | 2.57 |
4164 | 4884 | 8.984891 | TGTCGAAGAAATGCATAAAAATGAAT | 57.015 | 26.923 | 0.00 | 0.00 | 39.69 | 2.57 |
4165 | 4885 | 8.862074 | TGTCGAAGAAATGCATAAAAATGAATG | 58.138 | 29.630 | 0.00 | 0.00 | 39.69 | 2.67 |
4166 | 4886 | 7.842721 | GTCGAAGAAATGCATAAAAATGAATGC | 59.157 | 33.333 | 0.00 | 0.44 | 43.65 | 3.56 |
4205 | 4925 | 6.865834 | ACATCTAGATACATCCATTCCTCC | 57.134 | 41.667 | 4.54 | 0.00 | 0.00 | 4.30 |
4206 | 4926 | 5.420421 | ACATCTAGATACATCCATTCCTCCG | 59.580 | 44.000 | 4.54 | 0.00 | 0.00 | 4.63 |
4207 | 4927 | 5.256806 | TCTAGATACATCCATTCCTCCGA | 57.743 | 43.478 | 0.00 | 0.00 | 0.00 | 4.55 |
4208 | 4928 | 5.010933 | TCTAGATACATCCATTCCTCCGAC | 58.989 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4209 | 4929 | 2.558795 | AGATACATCCATTCCTCCGACG | 59.441 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
4210 | 4930 | 2.061509 | TACATCCATTCCTCCGACGA | 57.938 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4211 | 4931 | 0.747255 | ACATCCATTCCTCCGACGAG | 59.253 | 55.000 | 0.00 | 0.00 | 35.72 | 4.18 |
4212 | 4932 | 0.747255 | CATCCATTCCTCCGACGAGT | 59.253 | 55.000 | 0.00 | 0.00 | 33.93 | 4.18 |
4213 | 4933 | 1.954382 | CATCCATTCCTCCGACGAGTA | 59.046 | 52.381 | 0.00 | 0.00 | 33.93 | 2.59 |
4214 | 4934 | 2.359981 | TCCATTCCTCCGACGAGTAT | 57.640 | 50.000 | 0.00 | 0.00 | 33.93 | 2.12 |
4215 | 4935 | 2.662866 | TCCATTCCTCCGACGAGTATT | 58.337 | 47.619 | 0.00 | 0.00 | 33.93 | 1.89 |
4216 | 4936 | 3.028850 | TCCATTCCTCCGACGAGTATTT | 58.971 | 45.455 | 0.00 | 0.00 | 33.93 | 1.40 |
4217 | 4937 | 3.067742 | TCCATTCCTCCGACGAGTATTTC | 59.932 | 47.826 | 0.00 | 0.00 | 33.93 | 2.17 |
4218 | 4938 | 3.381949 | CATTCCTCCGACGAGTATTTCC | 58.618 | 50.000 | 0.00 | 0.00 | 33.93 | 3.13 |
4219 | 4939 | 1.019673 | TCCTCCGACGAGTATTTCCG | 58.980 | 55.000 | 0.00 | 0.00 | 33.93 | 4.30 |
4220 | 4940 | 0.030369 | CCTCCGACGAGTATTTCCGG | 59.970 | 60.000 | 0.00 | 0.00 | 41.36 | 5.14 |
4221 | 4941 | 1.019673 | CTCCGACGAGTATTTCCGGA | 58.980 | 55.000 | 0.00 | 0.00 | 45.74 | 5.14 |
4222 | 4942 | 0.734889 | TCCGACGAGTATTTCCGGAC | 59.265 | 55.000 | 1.83 | 0.00 | 43.47 | 4.79 |
4223 | 4943 | 0.590732 | CCGACGAGTATTTCCGGACG | 60.591 | 60.000 | 1.83 | 5.89 | 42.49 | 4.79 |
4224 | 4944 | 0.590732 | CGACGAGTATTTCCGGACGG | 60.591 | 60.000 | 1.83 | 3.96 | 0.00 | 4.79 |
4225 | 4945 | 0.734889 | GACGAGTATTTCCGGACGGA | 59.265 | 55.000 | 1.83 | 9.76 | 43.52 | 4.69 |
4226 | 4946 | 0.737219 | ACGAGTATTTCCGGACGGAG | 59.263 | 55.000 | 13.64 | 3.15 | 46.06 | 4.63 |
4227 | 4947 | 0.030369 | CGAGTATTTCCGGACGGAGG | 59.970 | 60.000 | 13.64 | 0.00 | 46.06 | 4.30 |
4228 | 4948 | 0.388294 | GAGTATTTCCGGACGGAGGG | 59.612 | 60.000 | 13.64 | 0.00 | 46.06 | 4.30 |
4229 | 4949 | 0.032813 | AGTATTTCCGGACGGAGGGA | 60.033 | 55.000 | 13.64 | 4.95 | 46.06 | 4.20 |
4298 | 5021 | 7.003402 | AGGAAGCACTTATTAAATTTGCCAA | 57.997 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4340 | 5063 | 2.094854 | GGACTTGGCAATGAAGCTTCAG | 60.095 | 50.000 | 31.14 | 20.73 | 41.08 | 3.02 |
4694 | 5417 | 4.630069 | AGTTTTACGCGCATTAGTGATCTT | 59.370 | 37.500 | 5.73 | 0.00 | 0.00 | 2.40 |
4759 | 5484 | 2.430248 | TGAGGATCATGCATGCAACT | 57.570 | 45.000 | 26.68 | 17.02 | 42.56 | 3.16 |
4779 | 5583 | 6.646636 | CAACTTGGTCGTTTTAACTCTGTAG | 58.353 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4791 | 5595 | 8.865001 | GTTTTAACTCTGTAGTAAGATGCTGAG | 58.135 | 37.037 | 0.00 | 0.00 | 37.06 | 3.35 |
4794 | 5598 | 4.887071 | ACTCTGTAGTAAGATGCTGAGAGG | 59.113 | 45.833 | 0.00 | 0.00 | 35.44 | 3.69 |
4811 | 5615 | 1.556911 | GAGGTGAAGAGCCTCCATCAA | 59.443 | 52.381 | 0.00 | 0.00 | 45.05 | 2.57 |
4841 | 5645 | 9.533253 | CATTTTAAGGAGTCAACAACAATTCTT | 57.467 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
4868 | 5673 | 7.028962 | TGATTTTTCATATCAACAGGAAAGCG | 58.971 | 34.615 | 0.00 | 0.00 | 31.62 | 4.68 |
4881 | 5686 | 3.753272 | CAGGAAAGCGAAGAAATTCCAGA | 59.247 | 43.478 | 6.21 | 0.00 | 43.03 | 3.86 |
4882 | 5687 | 4.397417 | CAGGAAAGCGAAGAAATTCCAGAT | 59.603 | 41.667 | 6.21 | 0.00 | 43.03 | 2.90 |
4961 | 5767 | 3.088532 | AGTCTCACTGTCTCAGGATGAC | 58.911 | 50.000 | 1.90 | 6.11 | 42.56 | 3.06 |
4962 | 5768 | 2.822561 | GTCTCACTGTCTCAGGATGACA | 59.177 | 50.000 | 1.90 | 0.00 | 42.56 | 3.58 |
4971 | 5777 | 3.640498 | GTCTCAGGATGACATGGATCTGA | 59.360 | 47.826 | 0.00 | 2.38 | 42.56 | 3.27 |
4972 | 5778 | 4.100653 | GTCTCAGGATGACATGGATCTGAA | 59.899 | 45.833 | 0.00 | 0.00 | 42.56 | 3.02 |
4993 | 5799 | 0.815615 | GATGCGGATGGACCCACTTC | 60.816 | 60.000 | 0.00 | 0.00 | 34.64 | 3.01 |
4994 | 5800 | 1.561769 | ATGCGGATGGACCCACTTCA | 61.562 | 55.000 | 0.00 | 0.00 | 34.64 | 3.02 |
4995 | 5801 | 1.745489 | GCGGATGGACCCACTTCAC | 60.745 | 63.158 | 0.00 | 0.00 | 34.64 | 3.18 |
4996 | 5802 | 1.078426 | CGGATGGACCCACTTCACC | 60.078 | 63.158 | 0.00 | 0.00 | 34.64 | 4.02 |
4997 | 5803 | 1.303282 | GGATGGACCCACTTCACCC | 59.697 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
4998 | 5804 | 1.208165 | GGATGGACCCACTTCACCCT | 61.208 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4999 | 5805 | 0.698818 | GATGGACCCACTTCACCCTT | 59.301 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5000 | 5806 | 0.405585 | ATGGACCCACTTCACCCTTG | 59.594 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
5001 | 5807 | 1.074951 | GGACCCACTTCACCCTTGG | 59.925 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
5002 | 5808 | 1.603739 | GACCCACTTCACCCTTGGC | 60.604 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
5350 | 6156 | 2.536365 | CGCCGTATGACTGTACACATT | 58.464 | 47.619 | 4.47 | 0.00 | 0.00 | 2.71 |
5351 | 6157 | 2.281498 | CGCCGTATGACTGTACACATTG | 59.719 | 50.000 | 4.47 | 0.00 | 0.00 | 2.82 |
5352 | 6158 | 3.259064 | GCCGTATGACTGTACACATTGT | 58.741 | 45.455 | 4.47 | 0.00 | 0.00 | 2.71 |
5366 | 6172 | 4.242475 | ACACATTGTACAGTCATACACCG | 58.758 | 43.478 | 0.00 | 0.00 | 34.79 | 4.94 |
5367 | 6173 | 4.242475 | CACATTGTACAGTCATACACCGT | 58.758 | 43.478 | 0.00 | 0.00 | 34.79 | 4.83 |
5368 | 6174 | 4.688879 | CACATTGTACAGTCATACACCGTT | 59.311 | 41.667 | 0.00 | 0.00 | 34.79 | 4.44 |
5369 | 6175 | 4.927425 | ACATTGTACAGTCATACACCGTTC | 59.073 | 41.667 | 0.00 | 0.00 | 34.79 | 3.95 |
5370 | 6176 | 4.587584 | TTGTACAGTCATACACCGTTCA | 57.412 | 40.909 | 0.00 | 0.00 | 34.79 | 3.18 |
5371 | 6177 | 4.587584 | TGTACAGTCATACACCGTTCAA | 57.412 | 40.909 | 0.00 | 0.00 | 29.97 | 2.69 |
5372 | 6178 | 4.552355 | TGTACAGTCATACACCGTTCAAG | 58.448 | 43.478 | 0.00 | 0.00 | 29.97 | 3.02 |
5373 | 6179 | 3.746045 | ACAGTCATACACCGTTCAAGT | 57.254 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
5374 | 6180 | 3.650139 | ACAGTCATACACCGTTCAAGTC | 58.350 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
5375 | 6181 | 3.321111 | ACAGTCATACACCGTTCAAGTCT | 59.679 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
5376 | 6182 | 4.521639 | ACAGTCATACACCGTTCAAGTCTA | 59.478 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
5377 | 6183 | 5.185249 | ACAGTCATACACCGTTCAAGTCTAT | 59.815 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5378 | 6184 | 6.100004 | CAGTCATACACCGTTCAAGTCTATT | 58.900 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
5379 | 6185 | 6.590292 | CAGTCATACACCGTTCAAGTCTATTT | 59.410 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5380 | 6186 | 7.117812 | CAGTCATACACCGTTCAAGTCTATTTT | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
5381 | 6187 | 7.331193 | AGTCATACACCGTTCAAGTCTATTTTC | 59.669 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
5382 | 6188 | 7.331193 | GTCATACACCGTTCAAGTCTATTTTCT | 59.669 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
5383 | 6189 | 5.924475 | ACACCGTTCAAGTCTATTTTCTG | 57.076 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
5384 | 6190 | 4.213482 | ACACCGTTCAAGTCTATTTTCTGC | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
5385 | 6191 | 3.432252 | ACCGTTCAAGTCTATTTTCTGCG | 59.568 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
5386 | 6192 | 3.408150 | CGTTCAAGTCTATTTTCTGCGC | 58.592 | 45.455 | 0.00 | 0.00 | 0.00 | 6.09 |
5387 | 6193 | 3.123621 | CGTTCAAGTCTATTTTCTGCGCT | 59.876 | 43.478 | 9.73 | 0.00 | 0.00 | 5.92 |
5398 | 6204 | 2.357327 | TTCTGCGCTTGTACGTACAT | 57.643 | 45.000 | 27.82 | 0.00 | 35.89 | 2.29 |
5399 | 6205 | 2.357327 | TCTGCGCTTGTACGTACATT | 57.643 | 45.000 | 27.82 | 0.00 | 35.89 | 2.71 |
5400 | 6206 | 2.679450 | TCTGCGCTTGTACGTACATTT | 58.321 | 42.857 | 27.82 | 0.00 | 35.89 | 2.32 |
5401 | 6207 | 3.061322 | TCTGCGCTTGTACGTACATTTT | 58.939 | 40.909 | 27.82 | 0.00 | 35.89 | 1.82 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
172 | 176 | 0.249489 | CCTATCGCCGTCTTCCCTTG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
252 | 953 | 4.653806 | TGTTTGTTTCGGCAAAAGTTTG | 57.346 | 36.364 | 0.00 | 0.00 | 39.65 | 2.93 |
253 | 954 | 5.674933 | TTTGTTTGTTTCGGCAAAAGTTT | 57.325 | 30.435 | 0.00 | 0.00 | 39.65 | 2.66 |
302 | 1007 | 0.386113 | GCCATGAGTAGTCGAGGTCC | 59.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
355 | 1060 | 3.272334 | GTGATGCGATCCGTGGCC | 61.272 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
898 | 1604 | 6.154021 | ACGTGCGGGAGAGGTATATTTATAAT | 59.846 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
900 | 1606 | 5.012239 | ACGTGCGGGAGAGGTATATTTATA | 58.988 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
901 | 1607 | 3.830755 | ACGTGCGGGAGAGGTATATTTAT | 59.169 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
902 | 1608 | 3.225104 | ACGTGCGGGAGAGGTATATTTA | 58.775 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
903 | 1609 | 2.037144 | ACGTGCGGGAGAGGTATATTT | 58.963 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
904 | 1610 | 1.700955 | ACGTGCGGGAGAGGTATATT | 58.299 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
905 | 1611 | 2.157738 | GTACGTGCGGGAGAGGTATAT | 58.842 | 52.381 | 0.00 | 0.00 | 0.00 | 0.86 |
906 | 1612 | 1.597742 | GTACGTGCGGGAGAGGTATA | 58.402 | 55.000 | 0.00 | 0.00 | 0.00 | 1.47 |
907 | 1613 | 1.442526 | CGTACGTGCGGGAGAGGTAT | 61.443 | 60.000 | 18.81 | 0.00 | 0.00 | 2.73 |
908 | 1614 | 2.108514 | CGTACGTGCGGGAGAGGTA | 61.109 | 63.158 | 18.81 | 0.00 | 0.00 | 3.08 |
909 | 1615 | 2.803155 | TACGTACGTGCGGGAGAGGT | 62.803 | 60.000 | 30.25 | 9.50 | 35.98 | 3.85 |
910 | 1616 | 1.442526 | ATACGTACGTGCGGGAGAGG | 61.443 | 60.000 | 30.25 | 0.48 | 35.98 | 3.69 |
911 | 1617 | 0.316772 | CATACGTACGTGCGGGAGAG | 60.317 | 60.000 | 30.25 | 10.82 | 35.98 | 3.20 |
912 | 1618 | 1.723273 | CATACGTACGTGCGGGAGA | 59.277 | 57.895 | 30.25 | 9.30 | 35.98 | 3.71 |
913 | 1619 | 1.942712 | GCATACGTACGTGCGGGAG | 60.943 | 63.158 | 30.25 | 18.10 | 35.98 | 4.30 |
914 | 1620 | 2.102749 | GCATACGTACGTGCGGGA | 59.897 | 61.111 | 30.25 | 17.20 | 35.98 | 5.14 |
917 | 1623 | 0.027716 | AGAGAGCATACGTACGTGCG | 59.972 | 55.000 | 30.25 | 24.57 | 45.69 | 5.34 |
918 | 1624 | 1.467875 | CAGAGAGCATACGTACGTGC | 58.532 | 55.000 | 30.25 | 24.60 | 41.57 | 5.34 |
919 | 1625 | 1.467875 | GCAGAGAGCATACGTACGTG | 58.532 | 55.000 | 30.25 | 15.95 | 44.79 | 4.49 |
920 | 1626 | 3.920144 | GCAGAGAGCATACGTACGT | 57.080 | 52.632 | 25.98 | 25.98 | 44.79 | 3.57 |
942 | 1653 | 1.434188 | TTGTGGAGTGTGGACTGGAT | 58.566 | 50.000 | 0.00 | 0.00 | 30.16 | 3.41 |
1018 | 1735 | 3.839432 | GGCGACGAGAAGGAGGGG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
1104 | 1821 | 4.136511 | TAATCCGCGACGCTGGCA | 62.137 | 61.111 | 19.02 | 10.79 | 0.00 | 4.92 |
1421 | 2141 | 1.837051 | TCGCTGAGGTTGAGGTGGT | 60.837 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
1479 | 2199 | 3.123620 | GTCTTGAGCCGCCTGCAG | 61.124 | 66.667 | 6.78 | 6.78 | 44.83 | 4.41 |
1493 | 2213 | 2.203640 | TGTGGAGCAGGACGGTCT | 60.204 | 61.111 | 8.23 | 0.00 | 42.06 | 3.85 |
1618 | 2338 | 4.814294 | GTTGACGAGGCCGCCGAT | 62.814 | 66.667 | 23.79 | 10.47 | 39.95 | 4.18 |
1782 | 2502 | 3.991536 | GAAGGCGGTGAGAGCGGTC | 62.992 | 68.421 | 6.48 | 6.48 | 39.82 | 4.79 |
1887 | 2607 | 0.332972 | GCCAAGAAGGGATGGTTCCT | 59.667 | 55.000 | 0.00 | 0.00 | 42.20 | 3.36 |
1896 | 2616 | 0.681243 | GGTTGCCTAGCCAAGAAGGG | 60.681 | 60.000 | 0.00 | 0.00 | 38.09 | 3.95 |
2040 | 2760 | 4.418328 | TTCCCAATGGCGTCCGGG | 62.418 | 66.667 | 0.00 | 7.67 | 40.32 | 5.73 |
2086 | 2806 | 3.084786 | GGCCTTCTAGCTCATTGTTGTT | 58.915 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
2124 | 2844 | 2.639839 | CTCAAGGGAGGAGAGGTTGAAA | 59.360 | 50.000 | 0.00 | 0.00 | 37.51 | 2.69 |
2190 | 2910 | 1.447663 | CATCGTGTCGCCCATGTCA | 60.448 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
2289 | 3009 | 4.641396 | TGTTTACTGTCTGAACCATCTGG | 58.359 | 43.478 | 0.00 | 0.00 | 42.17 | 3.86 |
2322 | 3042 | 2.579201 | CACTGCGGGATCGTTCCT | 59.421 | 61.111 | 12.19 | 0.00 | 42.20 | 3.36 |
2428 | 3148 | 1.227943 | TGCAGTTGGTCAGACTGGC | 60.228 | 57.895 | 1.81 | 0.00 | 43.63 | 4.85 |
2430 | 3150 | 0.533531 | TGCTGCAGTTGGTCAGACTG | 60.534 | 55.000 | 16.64 | 0.00 | 45.64 | 3.51 |
2460 | 3180 | 3.058224 | GCTTGTTGTCACTAACATCCACC | 60.058 | 47.826 | 0.00 | 0.00 | 40.00 | 4.61 |
2578 | 3298 | 2.235402 | GGTTGATGAAGTTCCCTACCGA | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2581 | 3301 | 3.263425 | TCCAGGTTGATGAAGTTCCCTAC | 59.737 | 47.826 | 0.00 | 0.07 | 0.00 | 3.18 |
2611 | 3331 | 6.040166 | CCCTGGAGAAGATTATTTTCCATGTG | 59.960 | 42.308 | 3.98 | 0.00 | 37.32 | 3.21 |
2666 | 3386 | 3.121944 | CAGAGACAACCGATTCAACTTCG | 59.878 | 47.826 | 0.00 | 0.00 | 36.38 | 3.79 |
2718 | 3438 | 4.365514 | TGTAAGATTTCCAAGAGCCACA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
2910 | 3630 | 3.304928 | GCAAAGTCCCAGTCAGTGAATTG | 60.305 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
2973 | 3693 | 5.774184 | TCCTGAGATCATATTGTCAGAGAGG | 59.226 | 44.000 | 8.55 | 0.00 | 39.04 | 3.69 |
3009 | 3729 | 3.054361 | AGCTTCGACACTCCCCAATATTT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3072 | 3792 | 2.674796 | GTCCTAGTGACAGCGGAATT | 57.325 | 50.000 | 6.51 | 0.00 | 43.85 | 2.17 |
3162 | 3882 | 4.373156 | ACTAGCAAGACCTTTCATGGTT | 57.627 | 40.909 | 0.00 | 0.00 | 41.00 | 3.67 |
3272 | 3992 | 1.701847 | GGATCCCACCACATAGAGCAT | 59.298 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
3279 | 3999 | 0.625849 | GTTGAGGGATCCCACCACAT | 59.374 | 55.000 | 32.69 | 10.96 | 38.92 | 3.21 |
3424 | 4144 | 1.742268 | CTTTGCTCTTCTAAGCCTGCC | 59.258 | 52.381 | 0.00 | 0.00 | 41.77 | 4.85 |
3477 | 4197 | 5.338365 | GCCAATTCAGCATAAGAAACTCTG | 58.662 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
3727 | 4447 | 1.705997 | AAGTCGCCACCTTGGGAGTT | 61.706 | 55.000 | 0.00 | 0.00 | 38.19 | 3.01 |
3732 | 4452 | 1.237285 | CCTTGAAGTCGCCACCTTGG | 61.237 | 60.000 | 0.00 | 0.00 | 41.55 | 3.61 |
3734 | 4454 | 1.600916 | GCCTTGAAGTCGCCACCTT | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
3822 | 4542 | 3.519107 | TGACATCTAGCATCTTGGGTTCA | 59.481 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3841 | 4561 | 5.877012 | TGGCTATCTGAAGTCTTTCAATGAC | 59.123 | 40.000 | 0.00 | 0.00 | 42.48 | 3.06 |
3949 | 4669 | 0.895530 | ACCATGTCGTTGTCGAGGAT | 59.104 | 50.000 | 0.00 | 0.00 | 46.96 | 3.24 |
4089 | 4809 | 8.910666 | CAATAGTTGAGAGTAGAATTATGCTCG | 58.089 | 37.037 | 11.74 | 0.00 | 37.05 | 5.03 |
4115 | 4835 | 2.571548 | TTCCGGACGGAGGAAGTAC | 58.428 | 57.895 | 13.64 | 0.00 | 46.06 | 2.73 |
4119 | 4839 | 1.856629 | AGTATTTCCGGACGGAGGAA | 58.143 | 50.000 | 13.64 | 6.93 | 46.06 | 3.36 |
4120 | 4840 | 1.479323 | CAAGTATTTCCGGACGGAGGA | 59.521 | 52.381 | 13.64 | 7.39 | 46.06 | 3.71 |
4121 | 4841 | 1.206371 | ACAAGTATTTCCGGACGGAGG | 59.794 | 52.381 | 13.64 | 0.00 | 46.06 | 4.30 |
4122 | 4842 | 2.537401 | GACAAGTATTTCCGGACGGAG | 58.463 | 52.381 | 13.64 | 3.15 | 46.06 | 4.63 |
4123 | 4843 | 1.135315 | CGACAAGTATTTCCGGACGGA | 60.135 | 52.381 | 1.83 | 9.76 | 43.52 | 4.69 |
4124 | 4844 | 1.135315 | TCGACAAGTATTTCCGGACGG | 60.135 | 52.381 | 1.83 | 3.96 | 0.00 | 4.79 |
4125 | 4845 | 2.267188 | TCGACAAGTATTTCCGGACG | 57.733 | 50.000 | 1.83 | 0.27 | 0.00 | 4.79 |
4126 | 4846 | 3.841643 | TCTTCGACAAGTATTTCCGGAC | 58.158 | 45.455 | 1.83 | 0.00 | 0.00 | 4.79 |
4127 | 4847 | 4.524316 | TTCTTCGACAAGTATTTCCGGA | 57.476 | 40.909 | 0.00 | 0.00 | 0.00 | 5.14 |
4128 | 4848 | 5.560148 | CATTTCTTCGACAAGTATTTCCGG | 58.440 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
4129 | 4849 | 5.022021 | GCATTTCTTCGACAAGTATTTCCG | 58.978 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4130 | 4850 | 5.938322 | TGCATTTCTTCGACAAGTATTTCC | 58.062 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
4131 | 4851 | 9.554724 | TTTATGCATTTCTTCGACAAGTATTTC | 57.445 | 29.630 | 3.54 | 0.00 | 0.00 | 2.17 |
4132 | 4852 | 9.906660 | TTTTATGCATTTCTTCGACAAGTATTT | 57.093 | 25.926 | 3.54 | 0.00 | 0.00 | 1.40 |
4133 | 4853 | 9.906660 | TTTTTATGCATTTCTTCGACAAGTATT | 57.093 | 25.926 | 3.54 | 0.00 | 0.00 | 1.89 |
4135 | 4855 | 9.340695 | CATTTTTATGCATTTCTTCGACAAGTA | 57.659 | 29.630 | 3.54 | 0.00 | 0.00 | 2.24 |
4136 | 4856 | 8.081633 | TCATTTTTATGCATTTCTTCGACAAGT | 58.918 | 29.630 | 3.54 | 0.00 | 0.00 | 3.16 |
4137 | 4857 | 8.451687 | TCATTTTTATGCATTTCTTCGACAAG | 57.548 | 30.769 | 3.54 | 0.00 | 0.00 | 3.16 |
4138 | 4858 | 8.809159 | TTCATTTTTATGCATTTCTTCGACAA | 57.191 | 26.923 | 3.54 | 0.00 | 0.00 | 3.18 |
4139 | 4859 | 8.862074 | CATTCATTTTTATGCATTTCTTCGACA | 58.138 | 29.630 | 3.54 | 0.00 | 0.00 | 4.35 |
4140 | 4860 | 7.842721 | GCATTCATTTTTATGCATTTCTTCGAC | 59.157 | 33.333 | 3.54 | 0.00 | 44.99 | 4.20 |
4141 | 4861 | 7.897920 | GCATTCATTTTTATGCATTTCTTCGA | 58.102 | 30.769 | 3.54 | 0.00 | 44.99 | 3.71 |
4179 | 4899 | 8.986991 | GGAGGAATGGATGTATCTAGATGTATT | 58.013 | 37.037 | 15.79 | 6.57 | 0.00 | 1.89 |
4180 | 4900 | 7.286546 | CGGAGGAATGGATGTATCTAGATGTAT | 59.713 | 40.741 | 15.79 | 9.11 | 0.00 | 2.29 |
4181 | 4901 | 6.603599 | CGGAGGAATGGATGTATCTAGATGTA | 59.396 | 42.308 | 15.79 | 4.44 | 0.00 | 2.29 |
4182 | 4902 | 5.420421 | CGGAGGAATGGATGTATCTAGATGT | 59.580 | 44.000 | 15.79 | 1.25 | 0.00 | 3.06 |
4183 | 4903 | 5.654209 | TCGGAGGAATGGATGTATCTAGATG | 59.346 | 44.000 | 15.79 | 0.00 | 0.00 | 2.90 |
4184 | 4904 | 5.654650 | GTCGGAGGAATGGATGTATCTAGAT | 59.345 | 44.000 | 10.73 | 10.73 | 0.00 | 1.98 |
4185 | 4905 | 5.010933 | GTCGGAGGAATGGATGTATCTAGA | 58.989 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
4186 | 4906 | 4.142578 | CGTCGGAGGAATGGATGTATCTAG | 60.143 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4187 | 4907 | 3.756963 | CGTCGGAGGAATGGATGTATCTA | 59.243 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
4188 | 4908 | 2.558795 | CGTCGGAGGAATGGATGTATCT | 59.441 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4189 | 4909 | 2.557056 | TCGTCGGAGGAATGGATGTATC | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4190 | 4910 | 2.558795 | CTCGTCGGAGGAATGGATGTAT | 59.441 | 50.000 | 1.73 | 0.00 | 36.61 | 2.29 |
4191 | 4911 | 1.954382 | CTCGTCGGAGGAATGGATGTA | 59.046 | 52.381 | 1.73 | 0.00 | 36.61 | 2.29 |
4192 | 4912 | 0.747255 | CTCGTCGGAGGAATGGATGT | 59.253 | 55.000 | 1.73 | 0.00 | 36.61 | 3.06 |
4193 | 4913 | 0.747255 | ACTCGTCGGAGGAATGGATG | 59.253 | 55.000 | 1.73 | 0.00 | 44.93 | 3.51 |
4194 | 4914 | 2.359981 | TACTCGTCGGAGGAATGGAT | 57.640 | 50.000 | 1.73 | 0.00 | 44.93 | 3.41 |
4195 | 4915 | 2.359981 | ATACTCGTCGGAGGAATGGA | 57.640 | 50.000 | 1.73 | 0.00 | 44.93 | 3.41 |
4196 | 4916 | 3.381949 | GAAATACTCGTCGGAGGAATGG | 58.618 | 50.000 | 1.73 | 0.00 | 44.93 | 3.16 |
4197 | 4917 | 3.381949 | GGAAATACTCGTCGGAGGAATG | 58.618 | 50.000 | 1.73 | 0.00 | 44.93 | 2.67 |
4198 | 4918 | 2.034305 | CGGAAATACTCGTCGGAGGAAT | 59.966 | 50.000 | 1.73 | 0.00 | 44.93 | 3.01 |
4199 | 4919 | 1.402968 | CGGAAATACTCGTCGGAGGAA | 59.597 | 52.381 | 1.73 | 0.00 | 44.93 | 3.36 |
4200 | 4920 | 1.019673 | CGGAAATACTCGTCGGAGGA | 58.980 | 55.000 | 0.00 | 0.00 | 44.93 | 3.71 |
4201 | 4921 | 0.030369 | CCGGAAATACTCGTCGGAGG | 59.970 | 60.000 | 0.00 | 0.00 | 44.93 | 4.30 |
4202 | 4922 | 1.019673 | TCCGGAAATACTCGTCGGAG | 58.980 | 55.000 | 0.00 | 0.00 | 43.84 | 4.63 |
4203 | 4923 | 0.734889 | GTCCGGAAATACTCGTCGGA | 59.265 | 55.000 | 5.23 | 0.00 | 46.06 | 4.55 |
4204 | 4924 | 0.590732 | CGTCCGGAAATACTCGTCGG | 60.591 | 60.000 | 5.23 | 0.00 | 41.80 | 4.79 |
4205 | 4925 | 0.590732 | CCGTCCGGAAATACTCGTCG | 60.591 | 60.000 | 5.23 | 1.25 | 37.50 | 5.12 |
4206 | 4926 | 0.734889 | TCCGTCCGGAAATACTCGTC | 59.265 | 55.000 | 5.23 | 0.00 | 42.05 | 4.20 |
4207 | 4927 | 0.737219 | CTCCGTCCGGAAATACTCGT | 59.263 | 55.000 | 5.23 | 0.00 | 44.66 | 4.18 |
4208 | 4928 | 0.030369 | CCTCCGTCCGGAAATACTCG | 59.970 | 60.000 | 5.23 | 3.90 | 44.66 | 4.18 |
4209 | 4929 | 0.388294 | CCCTCCGTCCGGAAATACTC | 59.612 | 60.000 | 5.23 | 0.00 | 44.66 | 2.59 |
4210 | 4930 | 0.032813 | TCCCTCCGTCCGGAAATACT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.12 |
4211 | 4931 | 0.388294 | CTCCCTCCGTCCGGAAATAC | 59.612 | 60.000 | 5.23 | 0.00 | 44.66 | 1.89 |
4212 | 4932 | 0.032813 | ACTCCCTCCGTCCGGAAATA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 1.40 |
4213 | 4933 | 0.032813 | TACTCCCTCCGTCCGGAAAT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.17 |
4214 | 4934 | 0.682209 | CTACTCCCTCCGTCCGGAAA | 60.682 | 60.000 | 5.23 | 0.00 | 44.66 | 3.13 |
4215 | 4935 | 1.077212 | CTACTCCCTCCGTCCGGAA | 60.077 | 63.158 | 5.23 | 0.00 | 44.66 | 4.30 |
4216 | 4936 | 0.982852 | TACTACTCCCTCCGTCCGGA | 60.983 | 60.000 | 0.00 | 0.00 | 42.90 | 5.14 |
4217 | 4937 | 0.110104 | ATACTACTCCCTCCGTCCGG | 59.890 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4218 | 4938 | 1.607628 | CAATACTACTCCCTCCGTCCG | 59.392 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
4219 | 4939 | 2.664015 | ACAATACTACTCCCTCCGTCC | 58.336 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
4220 | 4940 | 3.737355 | GCAACAATACTACTCCCTCCGTC | 60.737 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
4221 | 4941 | 2.167900 | GCAACAATACTACTCCCTCCGT | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4222 | 4942 | 2.167693 | TGCAACAATACTACTCCCTCCG | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4223 | 4943 | 3.906720 | TGCAACAATACTACTCCCTCC | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
4224 | 4944 | 5.880332 | TCAAATGCAACAATACTACTCCCTC | 59.120 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4225 | 4945 | 5.815581 | TCAAATGCAACAATACTACTCCCT | 58.184 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
4226 | 4946 | 6.699575 | ATCAAATGCAACAATACTACTCCC | 57.300 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
4227 | 4947 | 8.986477 | AAAATCAAATGCAACAATACTACTCC | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
4229 | 4949 | 9.979578 | TGAAAAATCAAATGCAACAATACTACT | 57.020 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
4340 | 5063 | 2.169352 | AGCTGTAGACATCACCATGGAC | 59.831 | 50.000 | 21.47 | 3.60 | 33.82 | 4.02 |
4694 | 5417 | 7.953005 | TCTATATTTTGCCAATTCACCAAGA | 57.047 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4755 | 5480 | 5.479716 | ACAGAGTTAAAACGACCAAGTTG | 57.520 | 39.130 | 0.00 | 0.00 | 34.14 | 3.16 |
4756 | 5481 | 6.343703 | ACTACAGAGTTAAAACGACCAAGTT | 58.656 | 36.000 | 0.00 | 0.00 | 30.91 | 2.66 |
4757 | 5482 | 5.910614 | ACTACAGAGTTAAAACGACCAAGT | 58.089 | 37.500 | 0.00 | 0.00 | 28.61 | 3.16 |
4758 | 5483 | 7.864379 | TCTTACTACAGAGTTAAAACGACCAAG | 59.136 | 37.037 | 0.00 | 0.00 | 37.10 | 3.61 |
4759 | 5484 | 7.715657 | TCTTACTACAGAGTTAAAACGACCAA | 58.284 | 34.615 | 0.00 | 0.00 | 37.10 | 3.67 |
4779 | 5583 | 4.681744 | CTCTTCACCTCTCAGCATCTTAC | 58.318 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
4794 | 5598 | 2.363683 | CCTTTGATGGAGGCTCTTCAC | 58.636 | 52.381 | 15.23 | 4.72 | 0.00 | 3.18 |
4811 | 5615 | 5.362430 | TGTTGTTGACTCCTTAAAATGCCTT | 59.638 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4841 | 5645 | 9.206870 | GCTTTCCTGTTGATATGAAAAATCAAA | 57.793 | 29.630 | 0.39 | 0.00 | 43.12 | 2.69 |
4853 | 5657 | 6.128007 | GGAATTTCTTCGCTTTCCTGTTGATA | 60.128 | 38.462 | 0.00 | 0.00 | 35.74 | 2.15 |
4854 | 5658 | 5.335976 | GGAATTTCTTCGCTTTCCTGTTGAT | 60.336 | 40.000 | 0.00 | 0.00 | 35.74 | 2.57 |
4857 | 5662 | 3.888930 | TGGAATTTCTTCGCTTTCCTGTT | 59.111 | 39.130 | 0.00 | 0.00 | 38.73 | 3.16 |
4868 | 5673 | 9.838339 | TCAGTTCCTTATATCTGGAATTTCTTC | 57.162 | 33.333 | 11.12 | 0.83 | 43.25 | 2.87 |
4961 | 5767 | 1.071228 | TCCGCATCCTTCAGATCCATG | 59.929 | 52.381 | 0.00 | 0.00 | 30.59 | 3.66 |
4962 | 5768 | 1.427809 | TCCGCATCCTTCAGATCCAT | 58.572 | 50.000 | 0.00 | 0.00 | 30.59 | 3.41 |
4971 | 5777 | 2.000701 | TGGGTCCATCCGCATCCTT | 61.001 | 57.895 | 0.00 | 0.00 | 37.00 | 3.36 |
4972 | 5778 | 2.366837 | TGGGTCCATCCGCATCCT | 60.367 | 61.111 | 0.00 | 0.00 | 37.00 | 3.24 |
4996 | 5802 | 3.117512 | ACCATTTACATCCCTAGCCAAGG | 60.118 | 47.826 | 0.00 | 0.00 | 46.09 | 3.61 |
4997 | 5803 | 4.170468 | ACCATTTACATCCCTAGCCAAG | 57.830 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
4998 | 5804 | 4.443739 | CGTACCATTTACATCCCTAGCCAA | 60.444 | 45.833 | 0.00 | 0.00 | 0.00 | 4.52 |
4999 | 5805 | 3.070446 | CGTACCATTTACATCCCTAGCCA | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 4.75 |
5000 | 5806 | 3.556423 | CCGTACCATTTACATCCCTAGCC | 60.556 | 52.174 | 0.00 | 0.00 | 0.00 | 3.93 |
5001 | 5807 | 3.322828 | TCCGTACCATTTACATCCCTAGC | 59.677 | 47.826 | 0.00 | 0.00 | 0.00 | 3.42 |
5002 | 5808 | 5.740290 | ATCCGTACCATTTACATCCCTAG | 57.260 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5350 | 6156 | 4.038282 | ACTTGAACGGTGTATGACTGTACA | 59.962 | 41.667 | 0.00 | 0.00 | 43.96 | 2.90 |
5351 | 6157 | 4.553323 | ACTTGAACGGTGTATGACTGTAC | 58.447 | 43.478 | 0.00 | 0.00 | 43.96 | 2.90 |
5352 | 6158 | 4.521639 | AGACTTGAACGGTGTATGACTGTA | 59.478 | 41.667 | 0.00 | 0.00 | 43.96 | 2.74 |
5354 | 6160 | 3.914312 | AGACTTGAACGGTGTATGACTG | 58.086 | 45.455 | 0.00 | 0.00 | 36.94 | 3.51 |
5355 | 6161 | 5.916661 | ATAGACTTGAACGGTGTATGACT | 57.083 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
5356 | 6162 | 6.963049 | AAATAGACTTGAACGGTGTATGAC | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
5357 | 6163 | 7.330946 | CAGAAAATAGACTTGAACGGTGTATGA | 59.669 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
5358 | 6164 | 7.456253 | CAGAAAATAGACTTGAACGGTGTATG | 58.544 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
5359 | 6165 | 6.092259 | GCAGAAAATAGACTTGAACGGTGTAT | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
5360 | 6166 | 5.407387 | GCAGAAAATAGACTTGAACGGTGTA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5361 | 6167 | 4.213482 | GCAGAAAATAGACTTGAACGGTGT | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
5362 | 6168 | 4.666655 | CGCAGAAAATAGACTTGAACGGTG | 60.667 | 45.833 | 0.00 | 0.00 | 0.00 | 4.94 |
5363 | 6169 | 3.432252 | CGCAGAAAATAGACTTGAACGGT | 59.568 | 43.478 | 0.00 | 0.00 | 0.00 | 4.83 |
5364 | 6170 | 3.725010 | GCGCAGAAAATAGACTTGAACGG | 60.725 | 47.826 | 0.30 | 0.00 | 0.00 | 4.44 |
5365 | 6171 | 3.123621 | AGCGCAGAAAATAGACTTGAACG | 59.876 | 43.478 | 11.47 | 0.00 | 0.00 | 3.95 |
5366 | 6172 | 4.670227 | AGCGCAGAAAATAGACTTGAAC | 57.330 | 40.909 | 11.47 | 0.00 | 0.00 | 3.18 |
5367 | 6173 | 4.515191 | ACAAGCGCAGAAAATAGACTTGAA | 59.485 | 37.500 | 11.47 | 0.00 | 37.17 | 2.69 |
5368 | 6174 | 4.065088 | ACAAGCGCAGAAAATAGACTTGA | 58.935 | 39.130 | 11.47 | 0.00 | 37.17 | 3.02 |
5369 | 6175 | 4.410492 | ACAAGCGCAGAAAATAGACTTG | 57.590 | 40.909 | 11.47 | 2.82 | 39.09 | 3.16 |
5370 | 6176 | 4.091509 | CGTACAAGCGCAGAAAATAGACTT | 59.908 | 41.667 | 11.47 | 0.00 | 0.00 | 3.01 |
5371 | 6177 | 3.612860 | CGTACAAGCGCAGAAAATAGACT | 59.387 | 43.478 | 11.47 | 0.00 | 0.00 | 3.24 |
5372 | 6178 | 3.367025 | ACGTACAAGCGCAGAAAATAGAC | 59.633 | 43.478 | 11.47 | 0.00 | 34.88 | 2.59 |
5373 | 6179 | 3.581755 | ACGTACAAGCGCAGAAAATAGA | 58.418 | 40.909 | 11.47 | 0.00 | 34.88 | 1.98 |
5374 | 6180 | 3.991605 | ACGTACAAGCGCAGAAAATAG | 57.008 | 42.857 | 11.47 | 0.00 | 34.88 | 1.73 |
5375 | 6181 | 4.236147 | TGTACGTACAAGCGCAGAAAATA | 58.764 | 39.130 | 25.54 | 0.00 | 32.40 | 1.40 |
5376 | 6182 | 3.061322 | TGTACGTACAAGCGCAGAAAAT | 58.939 | 40.909 | 25.54 | 0.00 | 32.40 | 1.82 |
5377 | 6183 | 2.471818 | TGTACGTACAAGCGCAGAAAA | 58.528 | 42.857 | 25.54 | 0.00 | 32.40 | 2.29 |
5378 | 6184 | 2.137129 | TGTACGTACAAGCGCAGAAA | 57.863 | 45.000 | 25.54 | 0.00 | 32.40 | 2.52 |
5379 | 6185 | 2.357327 | ATGTACGTACAAGCGCAGAA | 57.643 | 45.000 | 30.46 | 5.79 | 39.99 | 3.02 |
5380 | 6186 | 2.357327 | AATGTACGTACAAGCGCAGA | 57.643 | 45.000 | 30.46 | 6.54 | 39.99 | 4.26 |
5381 | 6187 | 3.449322 | AAAATGTACGTACAAGCGCAG | 57.551 | 42.857 | 30.46 | 3.78 | 39.99 | 5.18 |
5382 | 6188 | 4.389382 | ACATAAAATGTACGTACAAGCGCA | 59.611 | 37.500 | 30.46 | 15.73 | 42.78 | 6.09 |
5383 | 6189 | 4.721977 | CACATAAAATGTACGTACAAGCGC | 59.278 | 41.667 | 30.46 | 0.00 | 42.70 | 5.92 |
5384 | 6190 | 5.849858 | ACACATAAAATGTACGTACAAGCG | 58.150 | 37.500 | 30.46 | 17.71 | 42.70 | 4.68 |
5398 | 6204 | 4.563580 | CGCCGTATGACTGTACACATAAAA | 59.436 | 41.667 | 7.54 | 0.00 | 32.07 | 1.52 |
5399 | 6205 | 4.106909 | CGCCGTATGACTGTACACATAAA | 58.893 | 43.478 | 7.54 | 0.00 | 32.07 | 1.40 |
5400 | 6206 | 3.489568 | CCGCCGTATGACTGTACACATAA | 60.490 | 47.826 | 7.54 | 0.00 | 32.07 | 1.90 |
5401 | 6207 | 2.033675 | CCGCCGTATGACTGTACACATA | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.