Multiple sequence alignment - TraesCS6B01G211300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G211300 chr6B 100.000 7142 0 0 1 7142 279076147 279083288 0.000000e+00 13189.0
1 TraesCS6B01G211300 chr6A 95.428 5993 238 14 528 6512 212807626 212801662 0.000000e+00 9516.0
2 TraesCS6B01G211300 chr6A 81.128 461 43 25 6513 6964 212801591 212801166 5.340000e-86 329.0
3 TraesCS6B01G211300 chr6D 96.947 3210 67 14 397 3600 156563851 156567035 0.000000e+00 5356.0
4 TraesCS6B01G211300 chr6D 93.984 1546 77 7 4970 6512 156570364 156571896 0.000000e+00 2326.0
5 TraesCS6B01G211300 chr6D 96.444 1350 29 8 3640 4984 156567029 156568364 0.000000e+00 2209.0
6 TraesCS6B01G211300 chr6D 83.765 425 34 18 1 416 156563438 156563836 3.150000e-98 370.0
7 TraesCS6B01G211300 chr1B 94.444 36 2 0 5885 5920 17312900 17312865 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G211300 chr6B 279076147 279083288 7141 False 13189.00 13189 100.000 1 7142 1 chr6B.!!$F1 7141
1 TraesCS6B01G211300 chr6A 212801166 212807626 6460 True 4922.50 9516 88.278 528 6964 2 chr6A.!!$R1 6436
2 TraesCS6B01G211300 chr6D 156563438 156571896 8458 False 2565.25 5356 92.785 1 6512 4 chr6D.!!$F1 6511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 1.000955 ACCCTCTTTCACACGTAGCAG 59.999 52.381 0.00 0.0 0.00 4.24 F
1381 1431 1.530013 GCAGCACCAATGGCTTCAGT 61.530 55.000 0.00 0.0 40.23 3.41 F
1554 1604 1.795768 GACAGTTCGTGGCTCATCAA 58.204 50.000 0.00 0.0 0.00 2.57 F
2014 2064 2.562738 TCATGTCACAGACTCGGTTCAT 59.437 45.455 0.00 0.0 33.15 2.57 F
3523 3575 2.303022 AGCTTCCGTTGAAATGGAGAGA 59.697 45.455 4.26 0.0 44.46 3.10 F
4269 4326 3.571401 CACATCCCTTCCAGGAAATATGC 59.429 47.826 2.72 0.0 40.04 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1492 0.675083 TGCACTGCAAATGGGTGAAG 59.325 50.000 0.00 0.00 34.76 3.02 R
3278 3329 1.557269 GGTCACTCCACTGCATCCCT 61.557 60.000 0.00 0.00 35.97 4.20 R
3500 3552 3.074412 TCTCCATTTCAACGGAAGCTTC 58.926 45.455 18.54 18.54 33.82 3.86 R
3619 3671 5.163478 ACAAACTGTCCTACTAGTTCGTGTT 60.163 40.000 0.00 0.00 36.19 3.32 R
5022 7094 2.223735 GGAAATCATGGCTGCATCTGTG 60.224 50.000 0.50 0.00 0.00 3.66 R
6213 8288 0.104487 CACTGCCAATTTGCCACACA 59.896 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.797033 CCAAATCGCCGATTTAGATGATTAAC 59.203 38.462 23.22 0.00 39.82 2.01
39 40 7.308049 GCCGATTTAGATGATTAACCCTCTTTC 60.308 40.741 0.00 0.00 0.00 2.62
40 41 7.715249 CCGATTTAGATGATTAACCCTCTTTCA 59.285 37.037 0.00 0.00 0.00 2.69
41 42 8.552034 CGATTTAGATGATTAACCCTCTTTCAC 58.448 37.037 0.00 0.00 0.00 3.18
42 43 9.396022 GATTTAGATGATTAACCCTCTTTCACA 57.604 33.333 0.00 0.00 0.00 3.58
43 44 8.561738 TTTAGATGATTAACCCTCTTTCACAC 57.438 34.615 0.00 0.00 0.00 3.82
44 45 5.178797 AGATGATTAACCCTCTTTCACACG 58.821 41.667 0.00 0.00 0.00 4.49
45 46 4.345859 TGATTAACCCTCTTTCACACGT 57.654 40.909 0.00 0.00 0.00 4.49
46 47 5.471556 TGATTAACCCTCTTTCACACGTA 57.528 39.130 0.00 0.00 0.00 3.57
47 48 5.475719 TGATTAACCCTCTTTCACACGTAG 58.524 41.667 0.00 0.00 0.00 3.51
48 49 2.165319 AACCCTCTTTCACACGTAGC 57.835 50.000 0.00 0.00 0.00 3.58
49 50 1.045407 ACCCTCTTTCACACGTAGCA 58.955 50.000 0.00 0.00 0.00 3.49
50 51 1.000955 ACCCTCTTTCACACGTAGCAG 59.999 52.381 0.00 0.00 0.00 4.24
53 54 3.131396 CCTCTTTCACACGTAGCAGTTT 58.869 45.455 0.00 0.00 0.00 2.66
54 55 3.184581 CCTCTTTCACACGTAGCAGTTTC 59.815 47.826 0.00 0.00 0.00 2.78
59 63 6.649141 TCTTTCACACGTAGCAGTTTCATATT 59.351 34.615 0.00 0.00 0.00 1.28
62 66 6.598525 TCACACGTAGCAGTTTCATATTTTG 58.401 36.000 0.00 0.00 0.00 2.44
67 71 9.388346 CACGTAGCAGTTTCATATTTTGTTTTA 57.612 29.630 0.00 0.00 0.00 1.52
102 106 4.307432 AGAATTTATGCTATGACCGTCGG 58.693 43.478 10.48 10.48 0.00 4.79
105 109 4.652421 TTTATGCTATGACCGTCGGTTA 57.348 40.909 19.95 15.72 35.25 2.85
106 110 2.795175 ATGCTATGACCGTCGGTTAG 57.205 50.000 19.95 17.51 35.25 2.34
107 111 1.753930 TGCTATGACCGTCGGTTAGA 58.246 50.000 21.99 14.06 35.25 2.10
108 112 2.093890 TGCTATGACCGTCGGTTAGAA 58.906 47.619 21.99 12.28 35.25 2.10
109 113 2.492881 TGCTATGACCGTCGGTTAGAAA 59.507 45.455 21.99 9.89 35.25 2.52
110 114 2.856557 GCTATGACCGTCGGTTAGAAAC 59.143 50.000 21.99 9.02 35.25 2.78
111 115 3.428589 GCTATGACCGTCGGTTAGAAACT 60.429 47.826 21.99 6.00 35.25 2.66
112 116 3.672767 ATGACCGTCGGTTAGAAACTT 57.327 42.857 19.95 0.00 35.25 2.66
113 117 2.746269 TGACCGTCGGTTAGAAACTTG 58.254 47.619 19.95 0.00 35.25 3.16
114 118 2.064014 GACCGTCGGTTAGAAACTTGG 58.936 52.381 19.95 0.00 35.25 3.61
123 127 5.246656 TCGGTTAGAAACTTGGAACTATGGA 59.753 40.000 0.00 0.00 0.00 3.41
167 171 7.709149 AAATTTCTATATATGCCAAGAGCCC 57.291 36.000 0.00 0.00 42.71 5.19
177 181 2.968574 TGCCAAGAGCCCAACAATTAAA 59.031 40.909 0.00 0.00 42.71 1.52
183 187 5.468540 AGAGCCCAACAATTAAAAAGGAC 57.531 39.130 0.00 0.00 0.00 3.85
184 188 4.898861 AGAGCCCAACAATTAAAAAGGACA 59.101 37.500 0.00 0.00 0.00 4.02
188 192 5.179182 GCCCAACAATTAAAAAGGACACATG 59.821 40.000 0.00 0.00 0.00 3.21
191 195 6.073657 CCAACAATTAAAAAGGACACATGCAG 60.074 38.462 0.00 0.00 0.00 4.41
197 201 4.942761 AAAAGGACACATGCAGAACATT 57.057 36.364 0.00 0.00 36.64 2.71
198 202 4.942761 AAAGGACACATGCAGAACATTT 57.057 36.364 0.00 0.00 36.64 2.32
341 350 8.380099 TCTACAGTTATTAACCCACAAGTTCAT 58.620 33.333 2.92 0.00 0.00 2.57
403 412 7.797819 GTTGTAAACTCCTGTAGAATTCTGTG 58.202 38.462 18.47 7.58 45.32 3.66
472 516 9.679661 GGGGGAAATTTGTATGTTTATTTTGAT 57.320 29.630 0.00 0.00 0.00 2.57
504 548 7.668492 AGGATTATCTCGGTGTTTATTCTACC 58.332 38.462 0.00 0.00 0.00 3.18
517 561 5.853572 TTATTCTACCCCTCCTGTGTTTT 57.146 39.130 0.00 0.00 0.00 2.43
518 562 3.782656 TTCTACCCCTCCTGTGTTTTC 57.217 47.619 0.00 0.00 0.00 2.29
519 563 2.986050 TCTACCCCTCCTGTGTTTTCT 58.014 47.619 0.00 0.00 0.00 2.52
520 564 4.136341 TCTACCCCTCCTGTGTTTTCTA 57.864 45.455 0.00 0.00 0.00 2.10
521 565 3.836562 TCTACCCCTCCTGTGTTTTCTAC 59.163 47.826 0.00 0.00 0.00 2.59
1156 1205 3.287312 TCCGTGACGTATCGAAAACTT 57.713 42.857 3.64 0.00 0.00 2.66
1381 1431 1.530013 GCAGCACCAATGGCTTCAGT 61.530 55.000 0.00 0.00 40.23 3.41
1495 1545 3.928375 CCTGATGTTTGCTAAAACCATGC 59.072 43.478 0.00 0.00 44.29 4.06
1554 1604 1.795768 GACAGTTCGTGGCTCATCAA 58.204 50.000 0.00 0.00 0.00 2.57
1611 1661 4.546829 ATGAATTTGCTGCAGGTGAAAT 57.453 36.364 17.12 0.00 0.00 2.17
2014 2064 2.562738 TCATGTCACAGACTCGGTTCAT 59.437 45.455 0.00 0.00 33.15 2.57
2263 2313 9.822185 ATGGCAGGTCTTTATGAATTTATTTTC 57.178 29.630 0.00 0.00 0.00 2.29
2335 2385 5.875930 ACAAGCAAATAAATACGGTAGCAC 58.124 37.500 0.00 0.00 0.00 4.40
2736 2786 9.823647 GGACATTTCTGATAGTTTCATCTCTAA 57.176 33.333 0.00 0.00 32.72 2.10
2890 2940 6.183361 TGCTGGTATGCTTCCATAAAGAGTAT 60.183 38.462 0.00 0.00 37.12 2.12
2891 2941 6.712547 GCTGGTATGCTTCCATAAAGAGTATT 59.287 38.462 0.00 0.00 37.12 1.89
2892 2942 7.308229 GCTGGTATGCTTCCATAAAGAGTATTG 60.308 40.741 0.00 0.00 37.12 1.90
2893 2943 6.486657 TGGTATGCTTCCATAAAGAGTATTGC 59.513 38.462 0.00 0.00 37.12 3.56
2894 2944 6.712547 GGTATGCTTCCATAAAGAGTATTGCT 59.287 38.462 0.00 0.00 37.12 3.91
2904 2954 7.172190 CCATAAAGAGTATTGCTACATCCAGTG 59.828 40.741 0.00 0.00 0.00 3.66
2921 2971 4.103627 TCCAGTGCATCAGATGGTATGAAT 59.896 41.667 12.54 0.00 34.32 2.57
2977 3027 4.504461 GCAGTGACAGGATATTTCTACGTG 59.496 45.833 0.00 0.00 0.00 4.49
3054 3104 5.900865 TTCATCTCAAGTATGCATGCAAA 57.099 34.783 26.68 6.71 0.00 3.68
3086 3136 7.744087 TTGTAGAAGTTCATTATGCAGTTGT 57.256 32.000 5.50 0.00 0.00 3.32
3233 3284 6.811253 TTTTCTTTGTACCGCATTGTCTAT 57.189 33.333 0.00 0.00 0.00 1.98
3257 3308 5.056894 AGTTTTCTCAATCTGCATTGCTC 57.943 39.130 10.49 0.00 39.56 4.26
3341 3393 5.004448 TGGCGAGTGTTTTAACCATAATGA 58.996 37.500 0.00 0.00 0.00 2.57
3346 3398 8.062448 GCGAGTGTTTTAACCATAATGATACTC 58.938 37.037 0.00 0.00 0.00 2.59
3500 3552 3.393800 ACCACACAGATTCAAGAGTTCG 58.606 45.455 0.00 0.00 0.00 3.95
3523 3575 2.303022 AGCTTCCGTTGAAATGGAGAGA 59.697 45.455 4.26 0.00 44.46 3.10
3648 3700 6.364435 CGAACTAGTAGGACAGTTTGTTAACC 59.636 42.308 2.48 0.00 35.17 2.85
3649 3701 6.990908 ACTAGTAGGACAGTTTGTTAACCT 57.009 37.500 2.48 0.00 34.71 3.50
3650 3702 7.370905 ACTAGTAGGACAGTTTGTTAACCTT 57.629 36.000 2.48 0.00 34.71 3.50
3651 3703 8.482852 ACTAGTAGGACAGTTTGTTAACCTTA 57.517 34.615 2.48 0.00 34.71 2.69
3652 3704 8.363390 ACTAGTAGGACAGTTTGTTAACCTTAC 58.637 37.037 2.48 0.00 34.71 2.34
3653 3705 7.128234 AGTAGGACAGTTTGTTAACCTTACA 57.872 36.000 2.48 0.00 34.71 2.41
3654 3706 7.215085 AGTAGGACAGTTTGTTAACCTTACAG 58.785 38.462 2.48 0.00 34.71 2.74
3655 3707 6.243216 AGGACAGTTTGTTAACCTTACAGA 57.757 37.500 2.48 0.00 34.71 3.41
3656 3708 6.053650 AGGACAGTTTGTTAACCTTACAGAC 58.946 40.000 2.48 0.00 34.71 3.51
3657 3709 5.818857 GGACAGTTTGTTAACCTTACAGACA 59.181 40.000 2.48 0.00 34.18 3.41
3658 3710 6.238293 GGACAGTTTGTTAACCTTACAGACAC 60.238 42.308 2.48 0.00 34.18 3.67
3741 3796 6.772605 AGCCTTATGATCATTGCTGTATACA 58.227 36.000 14.65 5.25 0.00 2.29
3803 3858 6.374578 GTTGAAATTCTAGTCCTGCTTGAAC 58.625 40.000 0.00 0.00 40.60 3.18
4083 4139 5.587443 TCTCATCAACATGGTAAGCATGAAG 59.413 40.000 0.00 0.00 34.39 3.02
4269 4326 3.571401 CACATCCCTTCCAGGAAATATGC 59.429 47.826 2.72 0.00 40.04 3.14
4307 4364 6.567050 CAGCCATACATTTCTTTACAGCAAT 58.433 36.000 0.00 0.00 0.00 3.56
4308 4365 6.474427 CAGCCATACATTTCTTTACAGCAATG 59.526 38.462 0.45 0.45 39.01 2.82
4372 4429 4.133078 GAGGAATTTGCTGTCTATCCCAG 58.867 47.826 0.00 0.00 0.00 4.45
4398 4455 5.593502 CGGTACTAAGGACTTCTAACCTGAT 59.406 44.000 0.00 0.00 36.56 2.90
4621 4679 7.939039 TGATTGCTTTATCCTCCTTCGAATATT 59.061 33.333 0.00 0.00 0.00 1.28
5630 7705 5.048782 GCTTGACATCACATGACCAAAGTTA 60.049 40.000 0.00 0.00 0.00 2.24
5643 7718 9.965824 CATGACCAAAGTTAAAAACATACTTCT 57.034 29.630 0.00 0.00 31.26 2.85
5676 7751 3.192844 CAGCACATTCAATGGAAGAAGCT 59.807 43.478 1.58 1.08 36.25 3.74
5755 7830 7.918076 TGGAAACTCAAGAGAGGTACAATTAT 58.082 34.615 3.73 0.00 42.21 1.28
5769 7844 6.985645 AGGTACAATTATCGTACGCCAATAAA 59.014 34.615 11.24 0.00 40.13 1.40
5784 7859 8.394971 ACGCCAATAAATTGATCATATCTTCA 57.605 30.769 0.00 0.00 40.14 3.02
5885 7960 1.203758 TGTGCTGACGATAACGACCAT 59.796 47.619 0.00 0.00 42.66 3.55
5891 7966 2.594962 CGATAACGACCATGGCGGC 61.595 63.158 25.35 0.00 42.66 6.53
5927 8002 0.741221 GAGGTGGCAAAGCTAGTCCG 60.741 60.000 0.00 0.00 36.52 4.79
5978 8053 1.227205 GCATCTCTGGGACGCAGAG 60.227 63.158 33.05 33.05 45.50 3.35
5982 8057 0.832135 TCTCTGGGACGCAGAGGTTT 60.832 55.000 35.75 0.00 44.56 3.27
6006 8081 2.948720 GCCGAAGCAGGAGGTGAGT 61.949 63.158 0.00 0.00 39.53 3.41
6012 8087 3.570125 CGAAGCAGGAGGTGAGTATATCA 59.430 47.826 0.00 0.00 34.79 2.15
6072 8147 1.077787 CATTCTTGCGTGGGGCCTA 60.078 57.895 0.84 0.00 42.61 3.93
6073 8148 0.466189 CATTCTTGCGTGGGGCCTAT 60.466 55.000 0.84 0.00 42.61 2.57
6119 8194 2.639347 TCATCAGAGTTGCCAAGGAGAA 59.361 45.455 0.00 0.00 0.00 2.87
6143 8218 3.047115 AGGCATCCTCTGTCATCTGATT 58.953 45.455 0.00 0.00 0.00 2.57
6179 8254 2.746472 GCCCAGAAGAGTCACTGTTTGT 60.746 50.000 13.57 0.00 32.93 2.83
6213 8288 3.808466 TGCAGCTTCAGAGATATCGTT 57.192 42.857 0.00 0.00 0.00 3.85
6235 8310 3.955775 GGCAAATTGGCAGTGCAC 58.044 55.556 18.61 9.40 43.14 4.57
6247 8322 1.798813 GCAGTGCACGTAGCTTTAAGT 59.201 47.619 19.94 0.00 45.94 2.24
6248 8323 2.223377 GCAGTGCACGTAGCTTTAAGTT 59.777 45.455 19.94 0.00 45.94 2.66
6290 8365 3.451178 TGGACTATGGAAGGTGTAGCTTC 59.549 47.826 13.82 13.82 0.00 3.86
6337 8412 4.786425 AGAACTCAGGGATAAGGAAATGC 58.214 43.478 0.00 0.00 0.00 3.56
6338 8413 4.228210 AGAACTCAGGGATAAGGAAATGCA 59.772 41.667 0.00 0.00 0.00 3.96
6341 8416 6.266131 ACTCAGGGATAAGGAAATGCATTA 57.734 37.500 13.39 0.00 0.00 1.90
6349 8424 8.021396 GGGATAAGGAAATGCATTATAAACGAC 58.979 37.037 13.39 1.18 33.92 4.34
6389 8464 8.791355 AAGTTATGTAACGTGGAAACAAAATC 57.209 30.769 0.00 0.00 40.96 2.17
6391 8466 8.073768 AGTTATGTAACGTGGAAACAAAATCAG 58.926 33.333 0.00 0.00 40.96 2.90
6404 8479 8.330302 GGAAACAAAATCAGAAATTTGACACAG 58.670 33.333 15.46 0.00 38.50 3.66
6478 8553 8.821147 TGGACATTCATGAAAAATCAAGAAAG 57.179 30.769 13.09 0.35 32.28 2.62
6482 8557 9.431887 ACATTCATGAAAAATCAAGAAAGATGG 57.568 29.630 13.09 0.00 32.28 3.51
6497 8572 9.748708 CAAGAAAGATGGTGATTTTAAGTTTCA 57.251 29.630 0.00 0.00 0.00 2.69
6500 8575 8.538409 AAAGATGGTGATTTTAAGTTTCATGC 57.462 30.769 0.00 0.00 0.00 4.06
6524 8669 8.575589 TGCATGTTTGTAAATATCTGTGAGTTT 58.424 29.630 0.00 0.00 0.00 2.66
6551 8696 8.865090 TCATTAATCCCTTGCTTTTCAGTAAAA 58.135 29.630 0.00 0.00 33.58 1.52
6552 8697 8.925700 CATTAATCCCTTGCTTTTCAGTAAAAC 58.074 33.333 0.00 0.00 31.37 2.43
6556 8701 6.941857 TCCCTTGCTTTTCAGTAAAACTTTT 58.058 32.000 0.00 0.00 31.37 2.27
6600 8746 9.625747 ACTTGTTCATTTTAAACATTCCCAAAT 57.374 25.926 0.00 0.00 36.57 2.32
6611 8757 6.859420 AACATTCCCAAATTTGTTTACTGC 57.141 33.333 16.73 0.00 0.00 4.40
6635 8781 6.690530 CCTTTTCTGGATTGCTTGTCAATTA 58.309 36.000 0.00 0.00 44.95 1.40
6637 8783 7.820872 CCTTTTCTGGATTGCTTGTCAATTATT 59.179 33.333 0.00 0.00 44.95 1.40
6638 8784 9.859427 CTTTTCTGGATTGCTTGTCAATTATTA 57.141 29.630 0.00 0.00 44.95 0.98
6759 8905 9.415544 GCACTTCTTTTCAGATGTTTCATTTAT 57.584 29.630 0.00 0.00 35.67 1.40
6870 9020 1.001860 GCCCTTTGTGCAAAGCCATTA 59.998 47.619 16.70 0.00 44.76 1.90
6872 9022 2.612721 CCCTTTGTGCAAAGCCATTACC 60.613 50.000 16.70 0.00 44.76 2.85
6873 9023 2.036992 CCTTTGTGCAAAGCCATTACCA 59.963 45.455 16.70 0.00 44.76 3.25
6874 9024 3.306919 CCTTTGTGCAAAGCCATTACCAT 60.307 43.478 16.70 0.00 44.76 3.55
6876 9026 1.067000 TGTGCAAAGCCATTACCATGC 60.067 47.619 0.00 0.00 0.00 4.06
6877 9027 1.067000 GTGCAAAGCCATTACCATGCA 60.067 47.619 0.00 0.00 41.08 3.96
6880 9030 2.610374 GCAAAGCCATTACCATGCATTG 59.390 45.455 0.00 0.00 34.10 2.82
6890 9041 7.299586 CCATTACCATGCATTGTTTTTGAAAG 58.700 34.615 8.93 0.00 0.00 2.62
6896 9047 6.205076 CCATGCATTGTTTTTGAAAGATCCAA 59.795 34.615 0.00 0.00 0.00 3.53
6905 9056 1.798223 TGAAAGATCCAACGTTCGCTG 59.202 47.619 0.00 0.00 32.63 5.18
6925 9076 5.506151 CGCTGGCTTATCATTGATTTAGCAA 60.506 40.000 23.55 16.81 33.32 3.91
6943 9094 2.034305 GCAAAGAGCATATGGGAAGCAG 59.966 50.000 4.56 0.00 44.79 4.24
6944 9095 2.621998 CAAAGAGCATATGGGAAGCAGG 59.378 50.000 4.56 0.00 0.00 4.85
6949 9100 1.410083 GCATATGGGAAGCAGGGTTCA 60.410 52.381 12.65 0.00 0.00 3.18
6964 9115 5.357878 GCAGGGTTCAATCAAGTGATCAATA 59.642 40.000 0.00 0.00 32.75 1.90
6965 9116 6.127647 GCAGGGTTCAATCAAGTGATCAATAA 60.128 38.462 0.00 0.00 32.75 1.40
6966 9117 7.417116 GCAGGGTTCAATCAAGTGATCAATAAT 60.417 37.037 0.00 0.00 32.75 1.28
6967 9118 7.919091 CAGGGTTCAATCAAGTGATCAATAATG 59.081 37.037 0.00 0.00 32.75 1.90
6968 9119 7.835682 AGGGTTCAATCAAGTGATCAATAATGA 59.164 33.333 0.00 0.00 40.57 2.57
6969 9120 8.133627 GGGTTCAATCAAGTGATCAATAATGAG 58.866 37.037 0.00 0.00 39.39 2.90
6970 9121 8.680903 GGTTCAATCAAGTGATCAATAATGAGT 58.319 33.333 0.00 0.00 39.39 3.41
6988 9139 9.740239 ATAATGAGTTATGAAATGTGAATGTGC 57.260 29.630 0.00 0.00 0.00 4.57
6989 9140 5.953183 TGAGTTATGAAATGTGAATGTGCC 58.047 37.500 0.00 0.00 0.00 5.01
6990 9141 4.985413 AGTTATGAAATGTGAATGTGCCG 58.015 39.130 0.00 0.00 0.00 5.69
6991 9142 4.699735 AGTTATGAAATGTGAATGTGCCGA 59.300 37.500 0.00 0.00 0.00 5.54
6992 9143 2.987413 TGAAATGTGAATGTGCCGAC 57.013 45.000 0.00 0.00 0.00 4.79
6993 9144 1.196581 TGAAATGTGAATGTGCCGACG 59.803 47.619 0.00 0.00 0.00 5.12
6994 9145 0.109781 AAATGTGAATGTGCCGACGC 60.110 50.000 0.00 0.00 0.00 5.19
6995 9146 2.239341 AATGTGAATGTGCCGACGCG 62.239 55.000 3.53 3.53 38.08 6.01
6996 9147 3.411351 GTGAATGTGCCGACGCGT 61.411 61.111 13.85 13.85 38.08 6.01
6997 9148 2.663520 TGAATGTGCCGACGCGTT 60.664 55.556 15.53 0.00 38.22 4.84
6998 9149 1.373121 TGAATGTGCCGACGCGTTA 60.373 52.632 15.53 0.00 35.67 3.18
6999 9150 0.738063 TGAATGTGCCGACGCGTTAT 60.738 50.000 15.53 0.00 35.67 1.89
7000 9151 1.202203 GAATGTGCCGACGCGTTATA 58.798 50.000 15.53 0.00 35.67 0.98
7001 9152 1.790623 GAATGTGCCGACGCGTTATAT 59.209 47.619 15.53 1.63 35.67 0.86
7002 9153 1.860676 ATGTGCCGACGCGTTATATT 58.139 45.000 15.53 0.00 38.08 1.28
7003 9154 2.488639 TGTGCCGACGCGTTATATTA 57.511 45.000 15.53 0.00 38.08 0.98
7004 9155 2.807044 TGTGCCGACGCGTTATATTAA 58.193 42.857 15.53 0.00 38.08 1.40
7005 9156 3.382855 TGTGCCGACGCGTTATATTAAT 58.617 40.909 15.53 0.00 38.08 1.40
7006 9157 3.803231 TGTGCCGACGCGTTATATTAATT 59.197 39.130 15.53 0.00 38.08 1.40
7007 9158 4.270566 TGTGCCGACGCGTTATATTAATTT 59.729 37.500 15.53 0.00 38.08 1.82
7008 9159 4.605594 GTGCCGACGCGTTATATTAATTTG 59.394 41.667 15.53 0.00 38.08 2.32
7009 9160 4.270566 TGCCGACGCGTTATATTAATTTGT 59.729 37.500 15.53 0.00 38.08 2.83
7010 9161 5.461407 TGCCGACGCGTTATATTAATTTGTA 59.539 36.000 15.53 0.00 38.08 2.41
7011 9162 6.145858 TGCCGACGCGTTATATTAATTTGTAT 59.854 34.615 15.53 0.00 38.08 2.29
7012 9163 7.328005 TGCCGACGCGTTATATTAATTTGTATA 59.672 33.333 15.53 0.00 38.08 1.47
7013 9164 8.161610 GCCGACGCGTTATATTAATTTGTATAA 58.838 33.333 15.53 0.00 0.00 0.98
7032 9183 9.496873 TTGTATAAATCTCTTCCGAAAAACAGA 57.503 29.630 0.00 0.00 0.00 3.41
7033 9184 9.496873 TGTATAAATCTCTTCCGAAAAACAGAA 57.503 29.630 0.00 0.00 0.00 3.02
7037 9188 6.670077 ATCTCTTCCGAAAAACAGAATAGC 57.330 37.500 0.00 0.00 0.00 2.97
7038 9189 5.547465 TCTCTTCCGAAAAACAGAATAGCA 58.453 37.500 0.00 0.00 0.00 3.49
7039 9190 6.173339 TCTCTTCCGAAAAACAGAATAGCAT 58.827 36.000 0.00 0.00 0.00 3.79
7040 9191 6.655003 TCTCTTCCGAAAAACAGAATAGCATT 59.345 34.615 0.00 0.00 0.00 3.56
7041 9192 7.174946 TCTCTTCCGAAAAACAGAATAGCATTT 59.825 33.333 0.00 0.00 0.00 2.32
7042 9193 8.330466 TCTTCCGAAAAACAGAATAGCATTTA 57.670 30.769 0.00 0.00 0.00 1.40
7043 9194 8.956426 TCTTCCGAAAAACAGAATAGCATTTAT 58.044 29.630 0.00 0.00 0.00 1.40
7044 9195 9.573133 CTTCCGAAAAACAGAATAGCATTTATT 57.427 29.630 0.00 0.00 0.00 1.40
7045 9196 8.909708 TCCGAAAAACAGAATAGCATTTATTG 57.090 30.769 0.00 0.00 0.00 1.90
7101 9252 3.978687 GCACGAGCTATATGTTACAGGT 58.021 45.455 0.00 0.00 37.91 4.00
7102 9253 4.369182 GCACGAGCTATATGTTACAGGTT 58.631 43.478 0.00 0.00 37.91 3.50
7103 9254 4.444720 GCACGAGCTATATGTTACAGGTTC 59.555 45.833 0.00 0.00 37.91 3.62
7104 9255 5.736492 GCACGAGCTATATGTTACAGGTTCT 60.736 44.000 0.00 0.00 37.91 3.01
7105 9256 6.514541 GCACGAGCTATATGTTACAGGTTCTA 60.515 42.308 0.00 0.00 37.91 2.10
7106 9257 7.423199 CACGAGCTATATGTTACAGGTTCTAA 58.577 38.462 0.00 0.00 0.00 2.10
7107 9258 7.591795 CACGAGCTATATGTTACAGGTTCTAAG 59.408 40.741 0.00 0.00 0.00 2.18
7108 9259 7.501559 ACGAGCTATATGTTACAGGTTCTAAGA 59.498 37.037 0.00 0.00 0.00 2.10
7109 9260 8.350722 CGAGCTATATGTTACAGGTTCTAAGAA 58.649 37.037 0.00 0.00 0.00 2.52
7115 9266 7.981102 ATGTTACAGGTTCTAAGAAAAGACC 57.019 36.000 0.00 0.00 0.00 3.85
7116 9267 6.293698 TGTTACAGGTTCTAAGAAAAGACCC 58.706 40.000 0.00 0.00 0.00 4.46
7117 9268 6.100714 TGTTACAGGTTCTAAGAAAAGACCCT 59.899 38.462 0.00 0.00 38.84 4.34
7118 9269 5.648330 ACAGGTTCTAAGAAAAGACCCTT 57.352 39.130 0.00 0.00 36.33 3.95
7119 9270 5.622180 ACAGGTTCTAAGAAAAGACCCTTC 58.378 41.667 0.00 0.00 36.33 3.46
7120 9271 5.132144 ACAGGTTCTAAGAAAAGACCCTTCA 59.868 40.000 0.00 0.00 36.33 3.02
7121 9272 5.470437 CAGGTTCTAAGAAAAGACCCTTCAC 59.530 44.000 0.00 0.00 36.33 3.18
7122 9273 5.132144 AGGTTCTAAGAAAAGACCCTTCACA 59.868 40.000 0.00 0.00 34.98 3.58
7123 9274 6.004574 GGTTCTAAGAAAAGACCCTTCACAT 58.995 40.000 0.00 0.00 0.00 3.21
7124 9275 7.017254 AGGTTCTAAGAAAAGACCCTTCACATA 59.983 37.037 0.00 0.00 34.98 2.29
7125 9276 7.664318 GGTTCTAAGAAAAGACCCTTCACATAA 59.336 37.037 0.00 0.00 0.00 1.90
7126 9277 9.232473 GTTCTAAGAAAAGACCCTTCACATAAT 57.768 33.333 0.00 0.00 0.00 1.28
7127 9278 9.807921 TTCTAAGAAAAGACCCTTCACATAATT 57.192 29.630 0.00 0.00 0.00 1.40
7128 9279 9.807921 TCTAAGAAAAGACCCTTCACATAATTT 57.192 29.630 0.00 0.00 0.00 1.82
7131 9282 8.250143 AGAAAAGACCCTTCACATAATTTTGT 57.750 30.769 0.00 0.00 0.00 2.83
7132 9283 9.362151 AGAAAAGACCCTTCACATAATTTTGTA 57.638 29.630 0.96 0.00 0.00 2.41
7133 9284 9.974980 GAAAAGACCCTTCACATAATTTTGTAA 57.025 29.630 0.96 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.552178 AGAGGGTTAATCATCTAAATCGGC 58.448 41.667 0.00 0.00 0.00 5.54
31 32 1.000955 ACTGCTACGTGTGAAAGAGGG 59.999 52.381 0.00 0.00 0.00 4.30
39 40 6.370593 ACAAAATATGAAACTGCTACGTGTG 58.629 36.000 0.00 0.00 0.00 3.82
40 41 6.554334 ACAAAATATGAAACTGCTACGTGT 57.446 33.333 0.00 0.00 0.00 4.49
41 42 7.851822 AAACAAAATATGAAACTGCTACGTG 57.148 32.000 0.00 0.00 0.00 4.49
76 80 7.303261 CGACGGTCATAGCATAAATTCTACTA 58.697 38.462 9.10 0.00 0.00 1.82
77 81 6.150318 CGACGGTCATAGCATAAATTCTACT 58.850 40.000 9.10 0.00 0.00 2.57
78 82 5.345202 CCGACGGTCATAGCATAAATTCTAC 59.655 44.000 5.48 0.00 0.00 2.59
79 83 5.010314 ACCGACGGTCATAGCATAAATTCTA 59.990 40.000 15.37 0.00 0.00 2.10
83 87 3.746045 ACCGACGGTCATAGCATAAAT 57.254 42.857 15.37 0.00 0.00 1.40
94 98 2.064014 CCAAGTTTCTAACCGACGGTC 58.936 52.381 22.00 6.51 33.12 4.79
95 99 1.688197 TCCAAGTTTCTAACCGACGGT 59.312 47.619 15.37 15.37 37.65 4.83
102 106 8.738645 ATGATCCATAGTTCCAAGTTTCTAAC 57.261 34.615 0.00 0.00 0.00 2.34
105 109 8.324191 TCTATGATCCATAGTTCCAAGTTTCT 57.676 34.615 12.16 0.00 42.92 2.52
106 110 8.831550 GTTCTATGATCCATAGTTCCAAGTTTC 58.168 37.037 12.16 0.00 42.92 2.78
107 111 8.552296 AGTTCTATGATCCATAGTTCCAAGTTT 58.448 33.333 12.16 0.00 42.92 2.66
108 112 8.095452 AGTTCTATGATCCATAGTTCCAAGTT 57.905 34.615 12.16 0.00 42.92 2.66
109 113 7.682787 AGTTCTATGATCCATAGTTCCAAGT 57.317 36.000 12.16 2.35 42.92 3.16
110 114 8.642432 TGTAGTTCTATGATCCATAGTTCCAAG 58.358 37.037 12.16 0.00 42.92 3.61
111 115 8.547481 TGTAGTTCTATGATCCATAGTTCCAA 57.453 34.615 12.16 0.00 42.92 3.53
112 116 7.785028 ACTGTAGTTCTATGATCCATAGTTCCA 59.215 37.037 12.16 4.99 42.92 3.53
113 117 8.184304 ACTGTAGTTCTATGATCCATAGTTCC 57.816 38.462 12.16 4.11 42.92 3.62
153 157 2.530460 TTGTTGGGCTCTTGGCATAT 57.470 45.000 0.00 0.00 44.01 1.78
154 158 2.530460 ATTGTTGGGCTCTTGGCATA 57.470 45.000 0.00 0.00 44.01 3.14
155 159 1.648116 AATTGTTGGGCTCTTGGCAT 58.352 45.000 0.00 0.00 44.01 4.40
156 160 2.300956 TAATTGTTGGGCTCTTGGCA 57.699 45.000 0.00 0.00 44.01 4.92
167 171 6.700960 TCTGCATGTGTCCTTTTTAATTGTTG 59.299 34.615 0.00 0.00 0.00 3.33
177 181 4.942761 AAATGTTCTGCATGTGTCCTTT 57.057 36.364 0.00 0.00 37.96 3.11
197 201 7.957992 TGTACAGGGGTTTAAAGAAGAAAAA 57.042 32.000 0.00 0.00 0.00 1.94
198 202 7.957992 TTGTACAGGGGTTTAAAGAAGAAAA 57.042 32.000 0.00 0.00 0.00 2.29
202 206 7.761038 AGAATTGTACAGGGGTTTAAAGAAG 57.239 36.000 0.00 0.00 0.00 2.85
311 318 9.227777 ACTTGTGGGTTAATAACTGTAGATTTC 57.772 33.333 2.96 0.00 0.00 2.17
314 321 8.380099 TGAACTTGTGGGTTAATAACTGTAGAT 58.620 33.333 2.96 0.00 0.00 1.98
369 378 6.190954 ACAGGAGTTTACAACACAACTTTC 57.809 37.500 0.00 0.00 33.22 2.62
381 390 6.166982 AGCACAGAATTCTACAGGAGTTTAC 58.833 40.000 7.86 0.00 0.00 2.01
403 412 2.322355 ACATGTCATGGAGCAGTAGC 57.678 50.000 17.08 0.00 36.20 3.58
465 509 8.408601 CCGAGATAATCCTCACAAAATCAAAAT 58.591 33.333 0.00 0.00 32.86 1.82
466 510 7.393234 ACCGAGATAATCCTCACAAAATCAAAA 59.607 33.333 0.00 0.00 32.86 2.44
467 511 6.884295 ACCGAGATAATCCTCACAAAATCAAA 59.116 34.615 0.00 0.00 32.86 2.69
468 512 6.316140 CACCGAGATAATCCTCACAAAATCAA 59.684 38.462 0.00 0.00 32.86 2.57
469 513 5.817296 CACCGAGATAATCCTCACAAAATCA 59.183 40.000 0.00 0.00 32.86 2.57
470 514 5.817816 ACACCGAGATAATCCTCACAAAATC 59.182 40.000 0.00 0.00 32.86 2.17
471 515 5.745227 ACACCGAGATAATCCTCACAAAAT 58.255 37.500 0.00 0.00 32.86 1.82
472 516 5.160607 ACACCGAGATAATCCTCACAAAA 57.839 39.130 0.00 0.00 32.86 2.44
473 517 4.819105 ACACCGAGATAATCCTCACAAA 57.181 40.909 0.00 0.00 32.86 2.83
474 518 4.819105 AACACCGAGATAATCCTCACAA 57.181 40.909 0.00 0.00 32.86 3.33
475 519 4.819105 AAACACCGAGATAATCCTCACA 57.181 40.909 0.00 0.00 32.86 3.58
504 548 4.773149 AGTAGAGTAGAAAACACAGGAGGG 59.227 45.833 0.00 0.00 0.00 4.30
646 692 4.598894 CGATCTGCAGGCCTCCGG 62.599 72.222 15.13 0.00 0.00 5.14
1156 1205 3.546543 CCCGAATAGCCCGCCTGA 61.547 66.667 0.00 0.00 0.00 3.86
1442 1492 0.675083 TGCACTGCAAATGGGTGAAG 59.325 50.000 0.00 0.00 34.76 3.02
1495 1545 2.804527 CTCCGTGCAATCCACATCTATG 59.195 50.000 0.00 0.00 44.91 2.23
1554 1604 6.095580 CGTGTAGCCACTATATAGGTCATCAT 59.904 42.308 14.25 0.00 39.55 2.45
1611 1661 9.513906 TCATGTACACAATCTAAGATGGAAAAA 57.486 29.630 0.00 0.00 0.00 1.94
1747 1797 5.165676 TCATAAGCATCAAACTCGTACGTT 58.834 37.500 16.05 0.00 0.00 3.99
1980 2030 3.559655 TGTGACATGAAGAACCAAGAACG 59.440 43.478 0.00 0.00 0.00 3.95
2263 2313 7.007367 CCAAAATATTCAAATCGACTGACGTTG 59.993 37.037 0.00 0.00 43.13 4.10
2305 2355 8.550710 ACCGTATTTATTTGCTTGTACAACTA 57.449 30.769 3.59 0.00 0.00 2.24
2632 2682 5.828299 TCAACCTAACCAAGAACAACAAG 57.172 39.130 0.00 0.00 0.00 3.16
2736 2786 8.630037 AGTCGAAAGAATGTAAAACCTGAAAAT 58.370 29.630 0.00 0.00 45.01 1.82
2890 2940 2.236893 TCTGATGCACTGGATGTAGCAA 59.763 45.455 0.00 0.00 38.93 3.91
2891 2941 1.832998 TCTGATGCACTGGATGTAGCA 59.167 47.619 0.00 0.00 36.94 3.49
2892 2942 2.609427 TCTGATGCACTGGATGTAGC 57.391 50.000 0.00 0.00 0.00 3.58
2893 2943 3.181457 ACCATCTGATGCACTGGATGTAG 60.181 47.826 12.17 9.74 35.24 2.74
2894 2944 2.773661 ACCATCTGATGCACTGGATGTA 59.226 45.455 12.17 0.00 35.24 2.29
2904 2954 9.440773 TGTAGATAAATTCATACCATCTGATGC 57.559 33.333 12.17 0.00 0.00 3.91
2977 3027 1.963172 CTATAAGGCCGGACCCAAAC 58.037 55.000 1.76 0.00 40.58 2.93
3086 3136 7.805163 TCAAAGAAGCCCTAGAATCATAATGA 58.195 34.615 0.00 0.00 0.00 2.57
3233 3284 4.521639 AGCAATGCAGATTGAGAAAACTCA 59.478 37.500 8.35 0.00 41.49 3.41
3257 3308 1.654105 GTGCGGTCAATCTGACTTACG 59.346 52.381 6.74 3.72 46.19 3.18
3278 3329 1.557269 GGTCACTCCACTGCATCCCT 61.557 60.000 0.00 0.00 35.97 4.20
3341 3393 7.560796 AAAGGAATAGGATCCATTCGAGTAT 57.439 36.000 15.82 0.00 42.27 2.12
3500 3552 3.074412 TCTCCATTTCAACGGAAGCTTC 58.926 45.455 18.54 18.54 33.82 3.86
3523 3575 5.182001 GCACACCTCTTTGATAACATCTGTT 59.818 40.000 0.69 0.69 41.73 3.16
3572 3624 6.774656 ACAAAATCAATCAGAGAACCAAGAGT 59.225 34.615 0.00 0.00 0.00 3.24
3619 3671 5.163478 ACAAACTGTCCTACTAGTTCGTGTT 60.163 40.000 0.00 0.00 36.19 3.32
3741 3796 8.251721 CACTCTAGGTTAAGCAGTTATAACACT 58.748 37.037 17.65 11.21 34.44 3.55
3772 3827 9.381038 AGCAGGACTAGAATTTCAACCTATATA 57.619 33.333 0.00 0.00 0.00 0.86
4269 4326 0.680618 TGGCTGCACTTTTGAATGGG 59.319 50.000 0.50 0.00 0.00 4.00
4307 4364 3.907474 TGAACCCCTAGACATGTTCTTCA 59.093 43.478 0.00 0.00 38.29 3.02
4308 4365 4.553330 TGAACCCCTAGACATGTTCTTC 57.447 45.455 0.00 0.00 38.29 2.87
4372 4429 4.946772 AGGTTAGAAGTCCTTAGTACCGTC 59.053 45.833 0.00 0.00 0.00 4.79
4398 4455 6.877322 GGTTTAGTAAATCCAGTGAGCTGTTA 59.123 38.462 0.00 0.00 41.02 2.41
5022 7094 2.223735 GGAAATCATGGCTGCATCTGTG 60.224 50.000 0.50 0.00 0.00 3.66
5361 7433 6.313658 TCGAATCGTGAATGAATTCAGTTGAT 59.686 34.615 14.54 12.50 46.44 2.57
5630 7705 8.492673 TGCGAGATTGATAGAAGTATGTTTTT 57.507 30.769 0.00 0.00 0.00 1.94
5643 7718 3.795877 TGAATGTGCTGCGAGATTGATA 58.204 40.909 0.00 0.00 0.00 2.15
5645 7720 2.097680 TGAATGTGCTGCGAGATTGA 57.902 45.000 0.00 0.00 0.00 2.57
5676 7751 0.601057 TCCGATCGCACAGAACTTCA 59.399 50.000 10.32 0.00 0.00 3.02
5755 7830 7.817478 AGATATGATCAATTTATTGGCGTACGA 59.183 33.333 21.65 0.00 38.30 3.43
5784 7859 6.321435 AGCATCTGAAATCAATGATCATGTGT 59.679 34.615 9.46 0.00 0.00 3.72
5891 7966 2.837291 CCTCCTCCGCCTCCTCAG 60.837 72.222 0.00 0.00 0.00 3.35
5901 7976 1.301293 CTTTGCCACCTCCTCCTCC 59.699 63.158 0.00 0.00 0.00 4.30
5916 7991 1.757699 GAGATGGACCGGACTAGCTTT 59.242 52.381 9.46 0.00 0.00 3.51
6034 8109 1.139734 TCATCCTGCTCTTCGCGTC 59.860 57.895 5.77 0.00 43.27 5.19
6035 8110 1.153745 GTCATCCTGCTCTTCGCGT 60.154 57.895 5.77 0.00 43.27 6.01
6055 8130 0.179018 GATAGGCCCCACGCAAGAAT 60.179 55.000 0.00 0.00 40.31 2.40
6072 8147 3.866703 TCCTCCAGAGTCGTATCAGAT 57.133 47.619 0.00 0.00 0.00 2.90
6073 8148 3.117851 ACATCCTCCAGAGTCGTATCAGA 60.118 47.826 0.00 0.00 0.00 3.27
6137 8212 3.743521 CCGGATTATCTTGCCAATCAGA 58.256 45.455 0.00 0.00 33.64 3.27
6143 8218 1.150536 GGGCCGGATTATCTTGCCA 59.849 57.895 20.65 0.00 43.96 4.92
6179 8254 3.407424 AGCTGCAACTGTGATGAACTA 57.593 42.857 1.02 0.00 0.00 2.24
6213 8288 0.104487 CACTGCCAATTTGCCACACA 59.896 50.000 0.00 0.00 0.00 3.72
6235 8310 8.782533 AACTCATTTGAAAACTTAAAGCTACG 57.217 30.769 0.00 0.00 0.00 3.51
6307 8382 1.661463 TCCCTGAGTTCTTCTGCCAT 58.339 50.000 0.00 0.00 0.00 4.40
6309 8384 3.432890 CCTTATCCCTGAGTTCTTCTGCC 60.433 52.174 0.00 0.00 0.00 4.85
6310 8385 3.452627 TCCTTATCCCTGAGTTCTTCTGC 59.547 47.826 0.00 0.00 0.00 4.26
6312 8387 6.657875 CATTTCCTTATCCCTGAGTTCTTCT 58.342 40.000 0.00 0.00 0.00 2.85
6363 8438 9.240159 GATTTTGTTTCCACGTTACATAACTTT 57.760 29.630 0.00 0.00 34.12 2.66
6370 8445 6.438259 TTCTGATTTTGTTTCCACGTTACA 57.562 33.333 0.00 0.00 0.00 2.41
6376 8451 8.116136 GTGTCAAATTTCTGATTTTGTTTCCAC 58.884 33.333 11.17 10.22 35.01 4.02
6379 8454 9.086336 TCTGTGTCAAATTTCTGATTTTGTTTC 57.914 29.630 11.17 6.46 35.01 2.78
6471 8546 9.748708 TGAAACTTAAAATCACCATCTTTCTTG 57.251 29.630 0.00 0.00 0.00 3.02
6473 8548 9.918630 CATGAAACTTAAAATCACCATCTTTCT 57.081 29.630 0.00 0.00 0.00 2.52
6478 8553 7.546667 ACATGCATGAAACTTAAAATCACCATC 59.453 33.333 32.75 0.00 0.00 3.51
6482 8557 8.550376 ACAAACATGCATGAAACTTAAAATCAC 58.450 29.630 32.75 0.00 0.00 3.06
6491 8566 9.577110 CAGATATTTACAAACATGCATGAAACT 57.423 29.630 32.75 14.06 0.00 2.66
6497 8572 8.284945 ACTCACAGATATTTACAAACATGCAT 57.715 30.769 0.00 0.00 0.00 3.96
6515 8660 6.071728 AGCAAGGGATTAATGAAAACTCACAG 60.072 38.462 0.00 0.00 0.00 3.66
6524 8669 6.916360 ACTGAAAAGCAAGGGATTAATGAA 57.084 33.333 0.00 0.00 0.00 2.57
6528 8673 8.245195 AGTTTTACTGAAAAGCAAGGGATTAA 57.755 30.769 0.00 0.00 35.21 1.40
6600 8746 6.279882 CAATCCAGAAAAGGCAGTAAACAAA 58.720 36.000 0.00 0.00 0.00 2.83
6601 8747 5.738783 GCAATCCAGAAAAGGCAGTAAACAA 60.739 40.000 0.00 0.00 0.00 2.83
6603 8749 4.021981 AGCAATCCAGAAAAGGCAGTAAAC 60.022 41.667 0.00 0.00 0.00 2.01
6604 8750 4.151883 AGCAATCCAGAAAAGGCAGTAAA 58.848 39.130 0.00 0.00 0.00 2.01
6605 8751 3.766545 AGCAATCCAGAAAAGGCAGTAA 58.233 40.909 0.00 0.00 0.00 2.24
6608 8754 2.298163 ACAAGCAATCCAGAAAAGGCAG 59.702 45.455 0.00 0.00 0.00 4.85
6611 8757 4.589216 TTGACAAGCAATCCAGAAAAGG 57.411 40.909 0.00 0.00 0.00 3.11
6715 8861 7.161404 AGAAGTGCCGCATTATGATAATTAGA 58.839 34.615 0.00 0.00 0.00 2.10
6716 8862 7.369803 AGAAGTGCCGCATTATGATAATTAG 57.630 36.000 0.00 0.00 0.00 1.73
6717 8863 7.744087 AAGAAGTGCCGCATTATGATAATTA 57.256 32.000 0.00 0.00 0.00 1.40
6719 8865 6.639632 AAAGAAGTGCCGCATTATGATAAT 57.360 33.333 0.00 0.00 0.00 1.28
6722 8868 4.398988 TGAAAAGAAGTGCCGCATTATGAT 59.601 37.500 0.00 0.00 0.00 2.45
6723 8869 3.755905 TGAAAAGAAGTGCCGCATTATGA 59.244 39.130 0.00 0.00 0.00 2.15
6724 8870 4.095410 TGAAAAGAAGTGCCGCATTATG 57.905 40.909 0.00 0.00 0.00 1.90
6725 8871 4.009675 TCTGAAAAGAAGTGCCGCATTAT 58.990 39.130 0.00 0.00 0.00 1.28
6726 8872 3.407698 TCTGAAAAGAAGTGCCGCATTA 58.592 40.909 0.00 0.00 0.00 1.90
6732 8878 5.186996 TGAAACATCTGAAAAGAAGTGCC 57.813 39.130 0.00 0.00 0.00 5.01
6733 8879 7.704789 AAATGAAACATCTGAAAAGAAGTGC 57.295 32.000 0.00 0.00 0.00 4.40
6870 9020 5.702209 GGATCTTTCAAAAACAATGCATGGT 59.298 36.000 0.00 0.00 0.00 3.55
6872 9022 6.788684 TGGATCTTTCAAAAACAATGCATG 57.211 33.333 0.00 0.00 0.00 4.06
6873 9023 6.073657 CGTTGGATCTTTCAAAAACAATGCAT 60.074 34.615 0.00 0.00 0.00 3.96
6874 9024 5.233902 CGTTGGATCTTTCAAAAACAATGCA 59.766 36.000 0.00 0.00 0.00 3.96
6876 9026 6.826893 ACGTTGGATCTTTCAAAAACAATG 57.173 33.333 0.00 0.00 0.00 2.82
6877 9027 6.198216 CGAACGTTGGATCTTTCAAAAACAAT 59.802 34.615 5.00 0.00 0.00 2.71
6880 9030 4.085772 GCGAACGTTGGATCTTTCAAAAAC 60.086 41.667 14.98 0.00 0.00 2.43
6890 9041 1.298859 AAGCCAGCGAACGTTGGATC 61.299 55.000 28.19 14.61 44.03 3.36
6896 9047 1.665679 CAATGATAAGCCAGCGAACGT 59.334 47.619 0.00 0.00 0.00 3.99
6905 9056 6.640092 GCTCTTTGCTAAATCAATGATAAGCC 59.360 38.462 20.71 9.14 38.95 4.35
6925 9076 1.144503 CCCTGCTTCCCATATGCTCTT 59.855 52.381 0.00 0.00 0.00 2.85
6937 9088 3.149196 TCACTTGATTGAACCCTGCTTC 58.851 45.455 0.00 0.00 0.00 3.86
6940 9091 3.084039 TGATCACTTGATTGAACCCTGC 58.916 45.455 0.00 0.00 34.37 4.85
6943 9094 7.999679 TCATTATTGATCACTTGATTGAACCC 58.000 34.615 0.00 0.00 34.37 4.11
6944 9095 8.680903 ACTCATTATTGATCACTTGATTGAACC 58.319 33.333 0.00 0.00 34.37 3.62
6964 9115 7.037438 GGCACATTCACATTTCATAACTCATT 58.963 34.615 0.00 0.00 0.00 2.57
6965 9116 6.567050 GGCACATTCACATTTCATAACTCAT 58.433 36.000 0.00 0.00 0.00 2.90
6966 9117 5.391843 CGGCACATTCACATTTCATAACTCA 60.392 40.000 0.00 0.00 0.00 3.41
6967 9118 5.030295 CGGCACATTCACATTTCATAACTC 58.970 41.667 0.00 0.00 0.00 3.01
6968 9119 4.699735 TCGGCACATTCACATTTCATAACT 59.300 37.500 0.00 0.00 0.00 2.24
6969 9120 4.793216 GTCGGCACATTCACATTTCATAAC 59.207 41.667 0.00 0.00 0.00 1.89
6970 9121 4.436718 CGTCGGCACATTCACATTTCATAA 60.437 41.667 0.00 0.00 0.00 1.90
6971 9122 3.063316 CGTCGGCACATTCACATTTCATA 59.937 43.478 0.00 0.00 0.00 2.15
6972 9123 2.159531 CGTCGGCACATTCACATTTCAT 60.160 45.455 0.00 0.00 0.00 2.57
6973 9124 1.196581 CGTCGGCACATTCACATTTCA 59.803 47.619 0.00 0.00 0.00 2.69
6974 9125 1.882198 CGTCGGCACATTCACATTTC 58.118 50.000 0.00 0.00 0.00 2.17
6975 9126 0.109781 GCGTCGGCACATTCACATTT 60.110 50.000 0.00 0.00 39.62 2.32
6976 9127 1.501741 GCGTCGGCACATTCACATT 59.498 52.632 0.00 0.00 39.62 2.71
6977 9128 2.739704 CGCGTCGGCACATTCACAT 61.740 57.895 0.00 0.00 39.92 3.21
6978 9129 3.410516 CGCGTCGGCACATTCACA 61.411 61.111 0.00 0.00 39.92 3.58
6979 9130 1.619526 TAACGCGTCGGCACATTCAC 61.620 55.000 14.44 0.00 39.92 3.18
6980 9131 0.738063 ATAACGCGTCGGCACATTCA 60.738 50.000 14.44 0.00 39.92 2.57
6981 9132 1.202203 TATAACGCGTCGGCACATTC 58.798 50.000 14.44 0.00 39.92 2.67
6982 9133 1.860676 ATATAACGCGTCGGCACATT 58.139 45.000 14.44 0.00 39.92 2.71
6983 9134 1.860676 AATATAACGCGTCGGCACAT 58.139 45.000 14.44 0.00 39.92 3.21
6984 9135 2.488639 TAATATAACGCGTCGGCACA 57.511 45.000 14.44 0.00 39.92 4.57
6985 9136 4.379374 AATTAATATAACGCGTCGGCAC 57.621 40.909 14.44 0.00 39.92 5.01
6986 9137 4.270566 ACAAATTAATATAACGCGTCGGCA 59.729 37.500 14.44 0.00 39.92 5.69
6987 9138 4.764940 ACAAATTAATATAACGCGTCGGC 58.235 39.130 14.44 0.00 0.00 5.54
7006 9157 9.496873 TCTGTTTTTCGGAAGAGATTTATACAA 57.503 29.630 0.00 0.00 43.69 2.41
7007 9158 9.496873 TTCTGTTTTTCGGAAGAGATTTATACA 57.503 29.630 0.00 0.00 43.69 2.29
7017 9168 6.817765 AATGCTATTCTGTTTTTCGGAAGA 57.182 33.333 0.00 0.00 43.55 2.87
7018 9169 9.573133 AATAAATGCTATTCTGTTTTTCGGAAG 57.427 29.630 0.00 0.00 43.55 3.46
7019 9170 9.352784 CAATAAATGCTATTCTGTTTTTCGGAA 57.647 29.630 0.00 0.00 44.29 4.30
7020 9171 8.909708 CAATAAATGCTATTCTGTTTTTCGGA 57.090 30.769 0.00 0.00 0.00 4.55
7080 9231 3.978687 ACCTGTAACATATAGCTCGTGC 58.021 45.455 0.07 0.07 40.05 5.34
7081 9232 5.833082 AGAACCTGTAACATATAGCTCGTG 58.167 41.667 0.00 0.00 0.00 4.35
7082 9233 7.501559 TCTTAGAACCTGTAACATATAGCTCGT 59.498 37.037 0.00 0.00 0.00 4.18
7083 9234 7.872881 TCTTAGAACCTGTAACATATAGCTCG 58.127 38.462 0.00 0.00 0.00 5.03
7089 9240 9.668497 GGTCTTTTCTTAGAACCTGTAACATAT 57.332 33.333 0.00 0.00 0.00 1.78
7090 9241 8.098912 GGGTCTTTTCTTAGAACCTGTAACATA 58.901 37.037 0.00 0.00 46.57 2.29
7091 9242 6.940867 GGGTCTTTTCTTAGAACCTGTAACAT 59.059 38.462 0.00 0.00 46.57 2.71
7092 9243 6.293698 GGGTCTTTTCTTAGAACCTGTAACA 58.706 40.000 0.00 0.00 46.57 2.41
7093 9244 6.798315 GGGTCTTTTCTTAGAACCTGTAAC 57.202 41.667 0.00 0.00 46.57 2.50
7100 9251 8.617290 TTATGTGAAGGGTCTTTTCTTAGAAC 57.383 34.615 0.00 0.00 0.00 3.01
7101 9252 9.807921 AATTATGTGAAGGGTCTTTTCTTAGAA 57.192 29.630 0.00 0.00 0.00 2.10
7102 9253 9.807921 AAATTATGTGAAGGGTCTTTTCTTAGA 57.192 29.630 0.00 0.00 0.00 2.10
7105 9256 8.704668 ACAAAATTATGTGAAGGGTCTTTTCTT 58.295 29.630 0.00 0.00 30.82 2.52
7106 9257 8.250143 ACAAAATTATGTGAAGGGTCTTTTCT 57.750 30.769 0.00 0.00 30.82 2.52
7107 9258 9.974980 TTACAAAATTATGTGAAGGGTCTTTTC 57.025 29.630 0.00 0.00 34.75 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.