Multiple sequence alignment - TraesCS6B01G211200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G211200 chr6B 100.000 2423 0 0 1 2423 279067236 279069658 0.000000e+00 4475
1 TraesCS6B01G211200 chr6B 88.496 113 5 2 509 614 20040784 20040895 1.960000e-26 130
2 TraesCS6B01G211200 chr6A 93.223 1564 55 22 405 1956 209904055 209905579 0.000000e+00 2254
3 TraesCS6B01G211200 chr6A 84.946 372 47 4 1945 2308 209905604 209905974 3.810000e-98 368
4 TraesCS6B01G211200 chr6A 89.706 136 3 5 3 127 209903922 209904057 1.930000e-36 163
5 TraesCS6B01G211200 chr6D 93.034 1134 44 17 579 1696 156452990 156454104 0.000000e+00 1624
6 TraesCS6B01G211200 chr6D 94.615 260 14 0 1697 1956 156455076 156455335 1.040000e-108 403
7 TraesCS6B01G211200 chr6D 90.698 215 18 2 1945 2158 156455360 156455573 3.940000e-73 285
8 TraesCS6B01G211200 chr6D 94.656 131 7 0 405 535 156452506 156452636 1.140000e-48 204
9 TraesCS6B01G211200 chr6D 90.769 130 7 3 3 127 156452379 156452508 4.140000e-38 169
10 TraesCS6B01G211200 chr6D 88.596 114 4 3 509 614 168776316 168776428 1.960000e-26 130
11 TraesCS6B01G211200 chr6D 86.842 114 6 3 509 614 83966133 83966245 4.230000e-23 119
12 TraesCS6B01G211200 chr3B 95.775 284 7 3 125 408 17241823 17241545 1.020000e-123 453
13 TraesCS6B01G211200 chr3B 95.760 283 7 4 125 407 64297434 64297157 3.670000e-123 451
14 TraesCS6B01G211200 chr7B 95.455 286 8 5 120 405 283010830 283010550 3.670000e-123 451
15 TraesCS6B01G211200 chr7B 95.156 289 8 4 125 412 645580607 645580890 3.670000e-123 451
16 TraesCS6B01G211200 chr7B 95.760 283 6 5 123 405 701324658 701324934 3.670000e-123 451
17 TraesCS6B01G211200 chr5B 95.760 283 7 3 125 407 315185432 315185709 3.670000e-123 451
18 TraesCS6B01G211200 chr5A 95.122 287 10 2 121 407 534990734 534990452 1.320000e-122 449
19 TraesCS6B01G211200 chr4B 95.439 285 8 3 125 409 645319772 645319493 1.320000e-122 449
20 TraesCS6B01G211200 chr1B 95.122 287 8 4 123 409 593922515 593922795 4.750000e-122 448
21 TraesCS6B01G211200 chrUn 89.381 113 4 2 509 614 86456110 86456221 4.200000e-28 135
22 TraesCS6B01G211200 chrUn 88.596 114 4 3 509 614 86450109 86450221 1.960000e-26 130
23 TraesCS6B01G211200 chrUn 88.596 114 4 3 509 614 222679167 222679055 1.960000e-26 130
24 TraesCS6B01G211200 chrUn 88.596 114 4 3 509 614 403917999 403917887 1.960000e-26 130
25 TraesCS6B01G211200 chrUn 94.286 70 2 2 509 577 67962743 67962675 3.290000e-19 106
26 TraesCS6B01G211200 chr5D 88.496 113 5 2 509 614 324457949 324458060 1.960000e-26 130
27 TraesCS6B01G211200 chr4D 94.366 71 2 2 508 577 323561979 323561910 9.160000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G211200 chr6B 279067236 279069658 2422 False 4475.000000 4475 100.000000 1 2423 1 chr6B.!!$F2 2422
1 TraesCS6B01G211200 chr6A 209903922 209905974 2052 False 928.333333 2254 89.291667 3 2308 3 chr6A.!!$F1 2305
2 TraesCS6B01G211200 chr6D 156452379 156455573 3194 False 537.000000 1624 92.754400 3 2158 5 chr6D.!!$F3 2155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 1283 0.320247 CGCTCCAAGAAGCACTCACT 60.32 55.0 0.0 0.0 42.62 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 3429 0.749818 CTCTGACCTCCAGCGAGCTA 60.75 60.0 0.0 0.0 42.62 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 144 6.963796 ACTGAACTGCATTTGACTTCTTAAG 58.036 36.000 0.00 0.00 0.00 1.85
128 145 6.016777 ACTGAACTGCATTTGACTTCTTAAGG 60.017 38.462 1.85 0.00 0.00 2.69
129 146 4.773323 ACTGCATTTGACTTCTTAAGGC 57.227 40.909 1.85 0.00 36.92 4.35
130 147 4.401925 ACTGCATTTGACTTCTTAAGGCT 58.598 39.130 1.85 0.00 37.45 4.58
131 148 4.217118 ACTGCATTTGACTTCTTAAGGCTG 59.783 41.667 1.85 1.82 37.45 4.85
132 149 3.507233 TGCATTTGACTTCTTAAGGCTGG 59.493 43.478 1.85 0.00 37.45 4.85
133 150 3.507622 GCATTTGACTTCTTAAGGCTGGT 59.492 43.478 1.85 0.00 37.45 4.00
134 151 4.379918 GCATTTGACTTCTTAAGGCTGGTC 60.380 45.833 1.85 6.82 37.45 4.02
135 152 4.431416 TTTGACTTCTTAAGGCTGGTCA 57.569 40.909 1.85 9.08 37.45 4.02
136 153 3.402628 TGACTTCTTAAGGCTGGTCAC 57.597 47.619 1.85 0.00 37.45 3.67
137 154 2.703536 TGACTTCTTAAGGCTGGTCACA 59.296 45.455 1.85 0.00 37.45 3.58
139 156 2.706190 ACTTCTTAAGGCTGGTCACAGT 59.294 45.455 1.85 0.00 46.62 3.55
140 157 2.839486 TCTTAAGGCTGGTCACAGTG 57.161 50.000 1.85 0.00 46.62 3.66
141 158 1.347707 TCTTAAGGCTGGTCACAGTGG 59.652 52.381 1.85 0.00 46.62 4.00
142 159 0.400213 TTAAGGCTGGTCACAGTGGG 59.600 55.000 0.00 0.00 46.62 4.61
143 160 0.472925 TAAGGCTGGTCACAGTGGGA 60.473 55.000 0.00 0.00 46.62 4.37
144 161 1.352622 AAGGCTGGTCACAGTGGGAA 61.353 55.000 0.00 0.00 46.62 3.97
145 162 1.302832 GGCTGGTCACAGTGGGAAG 60.303 63.158 0.00 0.00 46.62 3.46
146 163 1.302832 GCTGGTCACAGTGGGAAGG 60.303 63.158 0.00 0.00 46.62 3.46
147 164 1.768684 GCTGGTCACAGTGGGAAGGA 61.769 60.000 0.00 0.00 46.62 3.36
148 165 0.764890 CTGGTCACAGTGGGAAGGAA 59.235 55.000 0.00 0.00 39.92 3.36
149 166 0.472471 TGGTCACAGTGGGAAGGAAC 59.528 55.000 0.00 0.00 0.00 3.62
150 167 3.878774 CTGGTCACAGTGGGAAGGAACT 61.879 54.545 0.00 0.00 39.60 3.01
151 168 5.333199 CTGGTCACAGTGGGAAGGAACTT 62.333 52.174 0.00 0.00 45.91 2.66
152 169 6.024982 CTGGTCACAGTGGGAAGGAACTTA 62.025 50.000 0.00 0.00 44.30 2.24
153 170 7.762128 CTGGTCACAGTGGGAAGGAACTTAG 62.762 52.000 0.00 0.00 44.30 2.18
167 184 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
168 185 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
169 186 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
170 187 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
171 188 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
177 194 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
178 195 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
179 196 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
180 197 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
181 198 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
182 199 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
183 200 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
184 201 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
185 202 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
186 203 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
187 204 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
188 205 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
189 206 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
190 207 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
191 208 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
192 209 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
193 210 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
194 211 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
195 212 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
196 213 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
197 214 2.287547 ACAACTTTGCTTATGTGGCACG 60.288 45.455 13.77 0.00 39.55 5.34
198 215 1.604604 ACTTTGCTTATGTGGCACGT 58.395 45.000 17.65 17.65 39.55 4.49
199 216 2.773487 ACTTTGCTTATGTGGCACGTA 58.227 42.857 15.38 15.38 39.55 3.57
200 217 3.343617 ACTTTGCTTATGTGGCACGTAT 58.656 40.909 19.55 7.98 39.55 3.06
201 218 3.756434 ACTTTGCTTATGTGGCACGTATT 59.244 39.130 19.55 4.10 39.55 1.89
202 219 4.217550 ACTTTGCTTATGTGGCACGTATTT 59.782 37.500 19.55 1.66 39.55 1.40
203 220 5.413213 ACTTTGCTTATGTGGCACGTATTTA 59.587 36.000 19.55 5.10 39.55 1.40
204 221 5.478233 TTGCTTATGTGGCACGTATTTAG 57.522 39.130 19.55 14.85 39.55 1.85
205 222 4.509616 TGCTTATGTGGCACGTATTTAGT 58.490 39.130 19.55 0.00 34.56 2.24
206 223 4.331443 TGCTTATGTGGCACGTATTTAGTG 59.669 41.667 19.55 7.87 42.15 2.74
207 224 4.569162 GCTTATGTGGCACGTATTTAGTGA 59.431 41.667 19.55 3.01 41.83 3.41
208 225 5.064198 GCTTATGTGGCACGTATTTAGTGAA 59.936 40.000 19.55 4.06 41.83 3.18
209 226 6.656314 TTATGTGGCACGTATTTAGTGAAG 57.344 37.500 19.55 0.00 41.83 3.02
210 227 4.260139 TGTGGCACGTATTTAGTGAAGA 57.740 40.909 13.77 0.00 41.83 2.87
211 228 4.242475 TGTGGCACGTATTTAGTGAAGAG 58.758 43.478 13.77 0.00 41.83 2.85
212 229 4.021807 TGTGGCACGTATTTAGTGAAGAGA 60.022 41.667 13.77 0.00 41.83 3.10
213 230 4.563184 GTGGCACGTATTTAGTGAAGAGAG 59.437 45.833 0.00 0.00 41.83 3.20
214 231 4.461431 TGGCACGTATTTAGTGAAGAGAGA 59.539 41.667 0.07 0.00 41.83 3.10
215 232 5.038033 GGCACGTATTTAGTGAAGAGAGAG 58.962 45.833 0.07 0.00 41.83 3.20
216 233 5.038033 GCACGTATTTAGTGAAGAGAGAGG 58.962 45.833 0.07 0.00 41.83 3.69
217 234 5.393243 GCACGTATTTAGTGAAGAGAGAGGT 60.393 44.000 0.07 0.00 41.83 3.85
218 235 6.030849 CACGTATTTAGTGAAGAGAGAGGTG 58.969 44.000 0.00 0.00 41.83 4.00
219 236 5.038033 CGTATTTAGTGAAGAGAGAGGTGC 58.962 45.833 0.00 0.00 0.00 5.01
220 237 5.163602 CGTATTTAGTGAAGAGAGAGGTGCT 60.164 44.000 0.00 0.00 0.00 4.40
221 238 5.753721 ATTTAGTGAAGAGAGAGGTGCTT 57.246 39.130 0.00 0.00 0.00 3.91
222 239 4.527509 TTAGTGAAGAGAGAGGTGCTTG 57.472 45.455 0.00 0.00 0.00 4.01
223 240 2.324541 AGTGAAGAGAGAGGTGCTTGT 58.675 47.619 0.00 0.00 0.00 3.16
224 241 2.036992 AGTGAAGAGAGAGGTGCTTGTG 59.963 50.000 0.00 0.00 0.00 3.33
225 242 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
226 243 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
227 244 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
228 245 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
229 246 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
230 247 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
231 248 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
232 249 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
249 266 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
250 267 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
251 268 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
252 269 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
253 270 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
254 271 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
255 272 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
256 273 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
257 274 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
258 275 3.135994 GTTACCGGAACATCACACACTT 58.864 45.455 9.46 0.00 38.02 3.16
259 276 1.878953 ACCGGAACATCACACACTTC 58.121 50.000 9.46 0.00 0.00 3.01
260 277 1.140052 ACCGGAACATCACACACTTCA 59.860 47.619 9.46 0.00 0.00 3.02
261 278 2.217750 CCGGAACATCACACACTTCAA 58.782 47.619 0.00 0.00 0.00 2.69
262 279 2.616376 CCGGAACATCACACACTTCAAA 59.384 45.455 0.00 0.00 0.00 2.69
263 280 3.066064 CCGGAACATCACACACTTCAAAA 59.934 43.478 0.00 0.00 0.00 2.44
264 281 4.439426 CCGGAACATCACACACTTCAAAAA 60.439 41.667 0.00 0.00 0.00 1.94
304 321 9.801873 AACCTAATAAATACATTGTTGCATGAC 57.198 29.630 0.00 0.00 0.00 3.06
305 322 8.965819 ACCTAATAAATACATTGTTGCATGACA 58.034 29.630 0.00 0.00 0.00 3.58
306 323 9.236691 CCTAATAAATACATTGTTGCATGACAC 57.763 33.333 0.00 0.00 0.00 3.67
309 326 9.787532 AATAAATACATTGTTGCATGACACTAC 57.212 29.630 0.00 0.00 0.00 2.73
310 327 6.816134 AATACATTGTTGCATGACACTACA 57.184 33.333 0.00 0.00 0.00 2.74
311 328 7.395190 AATACATTGTTGCATGACACTACAT 57.605 32.000 0.00 0.00 0.00 2.29
312 329 8.504812 AATACATTGTTGCATGACACTACATA 57.495 30.769 0.00 0.00 0.00 2.29
313 330 6.426980 ACATTGTTGCATGACACTACATAG 57.573 37.500 0.00 0.00 0.00 2.23
314 331 6.172630 ACATTGTTGCATGACACTACATAGA 58.827 36.000 0.00 0.00 0.00 1.98
315 332 6.825213 ACATTGTTGCATGACACTACATAGAT 59.175 34.615 0.00 0.00 0.00 1.98
316 333 6.667007 TTGTTGCATGACACTACATAGATG 57.333 37.500 0.00 0.00 0.00 2.90
317 334 5.733676 TGTTGCATGACACTACATAGATGT 58.266 37.500 0.00 0.08 44.48 3.06
318 335 6.172630 TGTTGCATGACACTACATAGATGTT 58.827 36.000 0.00 0.00 41.97 2.71
319 336 6.654582 TGTTGCATGACACTACATAGATGTTT 59.345 34.615 0.00 0.00 41.97 2.83
320 337 6.908870 TGCATGACACTACATAGATGTTTC 57.091 37.500 0.00 0.00 41.97 2.78
321 338 6.643388 TGCATGACACTACATAGATGTTTCT 58.357 36.000 0.00 0.00 41.97 2.52
322 339 7.781056 TGCATGACACTACATAGATGTTTCTA 58.219 34.615 0.00 0.00 41.97 2.10
323 340 7.706607 TGCATGACACTACATAGATGTTTCTAC 59.293 37.037 0.00 0.00 41.97 2.59
324 341 7.169982 GCATGACACTACATAGATGTTTCTACC 59.830 40.741 0.00 0.00 41.97 3.18
325 342 7.108841 TGACACTACATAGATGTTTCTACCC 57.891 40.000 0.00 0.00 41.97 3.69
326 343 6.666113 TGACACTACATAGATGTTTCTACCCA 59.334 38.462 0.00 0.00 41.97 4.51
327 344 6.875076 ACACTACATAGATGTTTCTACCCAC 58.125 40.000 0.00 0.00 41.97 4.61
328 345 6.668283 ACACTACATAGATGTTTCTACCCACT 59.332 38.462 0.00 0.00 41.97 4.00
329 346 7.837689 ACACTACATAGATGTTTCTACCCACTA 59.162 37.037 0.00 0.00 41.97 2.74
330 347 8.861086 CACTACATAGATGTTTCTACCCACTAT 58.139 37.037 0.00 0.00 41.97 2.12
331 348 8.861086 ACTACATAGATGTTTCTACCCACTATG 58.139 37.037 0.00 0.00 41.97 2.23
332 349 7.067496 ACATAGATGTTTCTACCCACTATGG 57.933 40.000 0.81 0.00 37.90 2.74
333 350 6.844388 ACATAGATGTTTCTACCCACTATGGA 59.156 38.462 0.81 0.00 37.45 3.41
334 351 7.347222 ACATAGATGTTTCTACCCACTATGGAA 59.653 37.037 0.81 0.00 37.45 3.53
335 352 6.636454 AGATGTTTCTACCCACTATGGAAA 57.364 37.500 0.00 0.00 40.96 3.13
336 353 6.653989 AGATGTTTCTACCCACTATGGAAAG 58.346 40.000 0.00 0.00 40.96 2.62
337 354 5.174037 TGTTTCTACCCACTATGGAAAGG 57.826 43.478 0.00 0.00 40.96 3.11
338 355 4.847512 TGTTTCTACCCACTATGGAAAGGA 59.152 41.667 0.00 0.00 40.96 3.36
339 356 5.045869 TGTTTCTACCCACTATGGAAAGGAG 60.046 44.000 0.00 0.00 40.96 3.69
340 357 3.654273 TCTACCCACTATGGAAAGGAGG 58.346 50.000 0.00 0.00 40.96 4.30
341 358 2.661176 ACCCACTATGGAAAGGAGGA 57.339 50.000 0.00 0.00 40.96 3.71
342 359 2.482494 ACCCACTATGGAAAGGAGGAG 58.518 52.381 0.00 0.00 40.96 3.69
343 360 2.225908 ACCCACTATGGAAAGGAGGAGT 60.226 50.000 0.00 0.00 40.96 3.85
344 361 3.013648 ACCCACTATGGAAAGGAGGAGTA 59.986 47.826 0.00 0.00 40.96 2.59
345 362 4.037927 CCCACTATGGAAAGGAGGAGTAA 58.962 47.826 0.00 0.00 40.96 2.24
346 363 4.141688 CCCACTATGGAAAGGAGGAGTAAC 60.142 50.000 0.00 0.00 40.96 2.50
347 364 4.469945 CCACTATGGAAAGGAGGAGTAACA 59.530 45.833 0.00 0.00 40.96 2.41
348 365 5.131142 CCACTATGGAAAGGAGGAGTAACAT 59.869 44.000 0.00 0.00 40.96 2.71
349 366 6.326583 CCACTATGGAAAGGAGGAGTAACATA 59.673 42.308 0.00 0.00 40.96 2.29
350 367 7.437748 CACTATGGAAAGGAGGAGTAACATAG 58.562 42.308 0.00 0.00 41.20 2.23
351 368 7.070074 CACTATGGAAAGGAGGAGTAACATAGT 59.930 40.741 0.00 0.00 46.13 2.12
352 369 5.934402 TGGAAAGGAGGAGTAACATAGTC 57.066 43.478 0.00 0.00 0.00 2.59
353 370 5.590818 TGGAAAGGAGGAGTAACATAGTCT 58.409 41.667 0.00 0.00 0.00 3.24
354 371 6.738635 TGGAAAGGAGGAGTAACATAGTCTA 58.261 40.000 0.00 0.00 0.00 2.59
355 372 6.834451 TGGAAAGGAGGAGTAACATAGTCTAG 59.166 42.308 0.00 0.00 0.00 2.43
356 373 6.265876 GGAAAGGAGGAGTAACATAGTCTAGG 59.734 46.154 0.00 0.00 0.00 3.02
357 374 5.327737 AGGAGGAGTAACATAGTCTAGGG 57.672 47.826 0.00 0.00 0.00 3.53
358 375 4.982956 AGGAGGAGTAACATAGTCTAGGGA 59.017 45.833 0.00 0.00 0.00 4.20
359 376 5.435707 AGGAGGAGTAACATAGTCTAGGGAA 59.564 44.000 0.00 0.00 0.00 3.97
360 377 5.771165 GGAGGAGTAACATAGTCTAGGGAAG 59.229 48.000 0.00 0.00 0.00 3.46
361 378 6.344232 AGGAGTAACATAGTCTAGGGAAGT 57.656 41.667 0.00 0.00 0.00 3.01
362 379 6.130569 AGGAGTAACATAGTCTAGGGAAGTG 58.869 44.000 0.00 0.00 0.00 3.16
363 380 5.892686 GGAGTAACATAGTCTAGGGAAGTGT 59.107 44.000 0.00 0.00 0.00 3.55
364 381 6.183360 GGAGTAACATAGTCTAGGGAAGTGTG 60.183 46.154 0.00 0.00 0.00 3.82
365 382 6.254522 AGTAACATAGTCTAGGGAAGTGTGT 58.745 40.000 0.00 0.00 0.00 3.72
366 383 7.408543 AGTAACATAGTCTAGGGAAGTGTGTA 58.591 38.462 0.00 0.00 0.00 2.90
367 384 7.892241 AGTAACATAGTCTAGGGAAGTGTGTAA 59.108 37.037 0.00 0.00 0.00 2.41
368 385 6.777213 ACATAGTCTAGGGAAGTGTGTAAG 57.223 41.667 0.00 0.00 0.00 2.34
369 386 6.254522 ACATAGTCTAGGGAAGTGTGTAAGT 58.745 40.000 0.00 0.00 0.00 2.24
370 387 6.724905 ACATAGTCTAGGGAAGTGTGTAAGTT 59.275 38.462 0.00 0.00 0.00 2.66
371 388 7.892241 ACATAGTCTAGGGAAGTGTGTAAGTTA 59.108 37.037 0.00 0.00 0.00 2.24
372 389 6.587206 AGTCTAGGGAAGTGTGTAAGTTAC 57.413 41.667 6.06 6.06 0.00 2.50
373 390 6.313324 AGTCTAGGGAAGTGTGTAAGTTACT 58.687 40.000 14.00 0.00 0.00 2.24
374 391 7.465116 AGTCTAGGGAAGTGTGTAAGTTACTA 58.535 38.462 14.00 1.06 0.00 1.82
375 392 7.611079 AGTCTAGGGAAGTGTGTAAGTTACTAG 59.389 40.741 14.00 4.64 33.84 2.57
376 393 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
377 394 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
378 395 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
379 396 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
380 397 7.399478 AGGGAAGTGTGTAAGTTACTAGCTTAT 59.601 37.037 14.00 3.60 32.01 1.73
381 398 7.491696 GGGAAGTGTGTAAGTTACTAGCTTATG 59.508 40.741 14.00 0.00 32.01 1.90
382 399 8.033626 GGAAGTGTGTAAGTTACTAGCTTATGT 58.966 37.037 14.00 0.00 32.01 2.29
383 400 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
384 401 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
385 402 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
386 403 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
387 404 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
388 405 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
389 406 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
390 407 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
391 408 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
392 409 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
393 410 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
394 411 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
395 412 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
396 413 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
397 414 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
398 415 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
399 416 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
400 417 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
401 418 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
402 419 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
403 420 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
404 421 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
405 422 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
406 423 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
428 445 7.228308 CCTAAATGGAAATGCCTTTTCAAACAA 59.772 33.333 0.00 0.00 44.67 2.83
489 506 4.284485 CCGTAAAGAAAAACAAGTTCGGG 58.716 43.478 0.00 0.00 0.00 5.14
507 524 3.138304 CGGGCTGCATACAATAAGCTTA 58.862 45.455 8.99 8.99 35.93 3.09
653 989 0.829333 CTGCTGCATACCTCTCCTGT 59.171 55.000 1.31 0.00 0.00 4.00
685 1021 3.006217 AGAATTTGCAAGGCTTGGAACTC 59.994 43.478 30.19 26.52 40.80 3.01
686 1022 2.071778 TTTGCAAGGCTTGGAACTCT 57.928 45.000 30.19 0.00 40.80 3.24
717 1053 4.021368 TGGTTCAGTTAGGAGCAAGTACTC 60.021 45.833 0.00 0.00 35.86 2.59
728 1064 4.082895 GGAGCAAGTACTCGTAGAAGTTGA 60.083 45.833 0.00 0.00 37.57 3.18
736 1072 0.802607 CGTAGAAGTTGAGCCTCGCC 60.803 60.000 0.00 0.00 0.00 5.54
783 1132 1.125093 AACACCACCGACTCCATGGA 61.125 55.000 15.27 15.27 36.94 3.41
815 1164 1.201647 GCAGCTGTTGATTGCACTCAT 59.798 47.619 16.64 0.00 37.75 2.90
841 1190 3.976015 ACAACTCCACTCCCAAAGAAAA 58.024 40.909 0.00 0.00 0.00 2.29
842 1191 4.349365 ACAACTCCACTCCCAAAGAAAAA 58.651 39.130 0.00 0.00 0.00 1.94
923 1283 0.320247 CGCTCCAAGAAGCACTCACT 60.320 55.000 0.00 0.00 42.62 3.41
924 1284 1.155042 GCTCCAAGAAGCACTCACTG 58.845 55.000 0.00 0.00 42.05 3.66
932 1292 3.360340 GCACTCACTGCACCAGCC 61.360 66.667 0.00 0.00 46.29 4.85
933 1293 2.670934 CACTCACTGCACCAGCCC 60.671 66.667 0.00 0.00 41.13 5.19
948 1308 4.106925 CCCAGCCCAGACAGCTCC 62.107 72.222 0.00 0.00 38.95 4.70
989 1349 1.334869 GGAAAGCACCACACTGTCAAG 59.665 52.381 0.00 0.00 0.00 3.02
990 1350 2.017049 GAAAGCACCACACTGTCAAGT 58.983 47.619 0.00 0.00 36.98 3.16
991 1351 3.202906 GAAAGCACCACACTGTCAAGTA 58.797 45.455 0.00 0.00 33.79 2.24
992 1352 3.275617 AAGCACCACACTGTCAAGTAA 57.724 42.857 0.00 0.00 33.79 2.24
1433 1793 1.066422 GCTGGTGAGCGATCGATCA 59.934 57.895 30.45 30.45 38.28 2.92
1440 1800 2.621000 GCGATCGATCAACGCCAC 59.379 61.111 24.40 1.73 45.35 5.01
1468 1828 1.611977 TCCAATCGAGAGTGACGTGTT 59.388 47.619 0.00 0.00 0.00 3.32
1593 1953 7.881775 AATTCTTAGTATTGGGTGTCAATCC 57.118 36.000 0.00 0.00 44.32 3.01
1632 1995 3.315470 GGGACTTGTGTGTTCCTCTTTTC 59.685 47.826 0.00 0.00 32.85 2.29
1635 1998 5.067805 GGACTTGTGTGTTCCTCTTTTCATT 59.932 40.000 0.00 0.00 0.00 2.57
1712 3051 5.600908 TTAGGCGTATGTGAACTGTTTTC 57.399 39.130 0.00 0.00 0.00 2.29
1717 3056 5.407387 GGCGTATGTGAACTGTTTTCTAAGA 59.593 40.000 0.00 0.00 0.00 2.10
1755 3095 4.847516 TTCGATCAGCGTCGCCGG 62.848 66.667 14.86 6.90 41.22 6.13
1785 3125 1.080230 CCTGGTCTGCACGACTCAG 60.080 63.158 17.56 17.56 42.44 3.35
1875 3215 1.329256 TCGAGAAGCATAGGTAGGGC 58.671 55.000 0.00 0.00 0.00 5.19
1888 3232 1.202486 GGTAGGGCACAATCGATCGAA 60.202 52.381 23.50 5.77 0.00 3.71
2048 3428 2.814336 GGACAAAGGTTGGCTTACAGAG 59.186 50.000 0.00 0.00 39.20 3.35
2049 3429 3.477530 GACAAAGGTTGGCTTACAGAGT 58.522 45.455 0.00 0.00 35.19 3.24
2096 3476 1.402968 CCAAACGATGAAGGAGGCATG 59.597 52.381 0.00 0.00 0.00 4.06
2097 3477 1.098050 AAACGATGAAGGAGGCATGC 58.902 50.000 9.90 9.90 0.00 4.06
2098 3478 0.749454 AACGATGAAGGAGGCATGCC 60.749 55.000 30.12 30.12 0.00 4.40
2100 3480 1.442526 CGATGAAGGAGGCATGCCAC 61.443 60.000 37.18 30.82 38.92 5.01
2146 3526 1.831389 GCACACGTCAACGCTGTCAT 61.831 55.000 1.81 0.00 44.43 3.06
2148 3528 0.249280 ACACGTCAACGCTGTCATGA 60.249 50.000 1.81 0.00 44.43 3.07
2178 3558 3.129502 CGGTGCCATCTGTGCCAG 61.130 66.667 0.00 0.00 0.00 4.85
2179 3559 2.352422 GGTGCCATCTGTGCCAGA 59.648 61.111 7.26 7.26 44.99 3.86
2182 3562 1.023513 GTGCCATCTGTGCCAGAGTC 61.024 60.000 10.13 3.76 44.08 3.36
2205 3593 3.151022 AGGCGTAGGAGGAGCAGC 61.151 66.667 0.00 0.00 0.00 5.25
2213 3601 2.558313 GAGGAGCAGCGCAACAAC 59.442 61.111 11.47 0.00 0.00 3.32
2216 3604 2.558313 GAGCAGCGCAACAACCTC 59.442 61.111 11.47 1.62 0.00 3.85
2225 3613 1.376037 CAACAACCTCCGGCTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
2226 3614 1.841556 AACAACCTCCGGCTCCTCA 60.842 57.895 0.00 0.00 0.00 3.86
2229 3617 1.841556 AACCTCCGGCTCCTCAACA 60.842 57.895 0.00 0.00 0.00 3.33
2249 3637 3.147595 CACCGGCTCATCGAGGGA 61.148 66.667 0.00 0.00 0.00 4.20
2256 3644 1.599542 GGCTCATCGAGGGAAAAATCG 59.400 52.381 0.00 0.00 40.26 3.34
2258 3646 1.599542 CTCATCGAGGGAAAAATCGCC 59.400 52.381 0.00 0.00 38.79 5.54
2282 3670 0.807667 AGCACGAGAACGATGATGCC 60.808 55.000 0.00 0.00 42.66 4.40
2283 3671 1.920051 CACGAGAACGATGATGCCG 59.080 57.895 0.00 0.00 42.66 5.69
2308 3696 0.107703 GCCATGGTCGTGGAAGATCA 60.108 55.000 14.67 0.00 42.02 2.92
2309 3697 1.945387 CCATGGTCGTGGAAGATCAG 58.055 55.000 2.57 0.00 42.02 2.90
2310 3698 1.482182 CCATGGTCGTGGAAGATCAGA 59.518 52.381 2.57 0.00 42.02 3.27
2311 3699 2.482664 CCATGGTCGTGGAAGATCAGAG 60.483 54.545 2.57 0.00 42.02 3.35
2312 3700 1.924731 TGGTCGTGGAAGATCAGAGT 58.075 50.000 0.00 0.00 0.00 3.24
2313 3701 1.819288 TGGTCGTGGAAGATCAGAGTC 59.181 52.381 0.00 0.00 0.00 3.36
2314 3702 1.135333 GGTCGTGGAAGATCAGAGTCC 59.865 57.143 0.00 0.00 0.00 3.85
2315 3703 1.819288 GTCGTGGAAGATCAGAGTCCA 59.181 52.381 0.00 0.00 39.14 4.02
2316 3704 2.095461 TCGTGGAAGATCAGAGTCCAG 58.905 52.381 7.48 4.00 42.07 3.86
2317 3705 1.470632 CGTGGAAGATCAGAGTCCAGC 60.471 57.143 7.48 3.81 42.07 4.85
2318 3706 0.820226 TGGAAGATCAGAGTCCAGCG 59.180 55.000 0.00 0.00 36.51 5.18
2319 3707 0.820871 GGAAGATCAGAGTCCAGCGT 59.179 55.000 0.00 0.00 0.00 5.07
2320 3708 2.025155 GGAAGATCAGAGTCCAGCGTA 58.975 52.381 0.00 0.00 0.00 4.42
2321 3709 2.034053 GGAAGATCAGAGTCCAGCGTAG 59.966 54.545 0.00 0.00 0.00 3.51
2334 3722 3.379625 CGTAGCGCTCGCGACATC 61.380 66.667 24.07 0.00 44.92 3.06
2338 3726 3.696426 GCGCTCGCGACATCCATC 61.696 66.667 16.26 0.00 42.83 3.51
2339 3727 3.390017 CGCTCGCGACATCCATCG 61.390 66.667 3.71 0.00 45.09 3.84
2346 3734 1.202568 CGACATCCATCGCAATCGC 59.797 57.895 0.00 0.00 34.90 4.58
2347 3735 1.571460 GACATCCATCGCAATCGCC 59.429 57.895 0.00 0.00 35.26 5.54
2348 3736 2.162921 GACATCCATCGCAATCGCCG 62.163 60.000 0.00 0.00 35.26 6.46
2349 3737 2.666190 ATCCATCGCAATCGCCGG 60.666 61.111 0.00 0.00 35.26 6.13
2357 3745 4.892379 CAATCGCCGGCGCATGTG 62.892 66.667 42.78 30.04 39.59 3.21
2392 3780 4.602696 CGGCTACGCGTCCTACGG 62.603 72.222 18.63 4.39 42.82 4.02
2400 3788 3.584052 CGTCCTACGGGCGGAGAG 61.584 72.222 0.00 0.00 38.08 3.20
2401 3789 2.124403 GTCCTACGGGCGGAGAGA 60.124 66.667 0.00 0.00 0.00 3.10
2402 3790 2.188161 GTCCTACGGGCGGAGAGAG 61.188 68.421 0.00 0.00 0.00 3.20
2403 3791 2.192443 CCTACGGGCGGAGAGAGA 59.808 66.667 0.00 0.00 0.00 3.10
2404 3792 2.188161 CCTACGGGCGGAGAGAGAC 61.188 68.421 0.00 0.00 0.00 3.36
2405 3793 1.451567 CTACGGGCGGAGAGAGACA 60.452 63.158 0.00 0.00 0.00 3.41
2406 3794 1.716826 CTACGGGCGGAGAGAGACAC 61.717 65.000 0.00 0.00 0.00 3.67
2407 3795 3.827898 CGGGCGGAGAGAGACACC 61.828 72.222 0.00 0.00 0.00 4.16
2408 3796 3.462678 GGGCGGAGAGAGACACCC 61.463 72.222 0.00 0.00 0.00 4.61
2409 3797 2.363147 GGCGGAGAGAGACACCCT 60.363 66.667 0.00 0.00 0.00 4.34
2410 3798 2.419739 GGCGGAGAGAGACACCCTC 61.420 68.421 0.00 0.00 42.28 4.30
2417 3805 3.827898 GAGACACCCTCTCCGCGG 61.828 72.222 22.12 22.12 39.87 6.46
2418 3806 4.361971 AGACACCCTCTCCGCGGA 62.362 66.667 29.03 29.03 0.00 5.54
2419 3807 3.827898 GACACCCTCTCCGCGGAG 61.828 72.222 42.89 42.89 43.21 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.415332 TCCGCGCCAGAACGAGTC 62.415 66.667 0.00 0.00 34.06 3.36
1 2 4.421479 CTCCGCGCCAGAACGAGT 62.421 66.667 0.00 0.00 34.06 4.18
20 21 1.614996 TTACCACCGAACGACCACTA 58.385 50.000 0.00 0.00 0.00 2.74
127 144 1.302832 CTTCCCACTGTGACCAGCC 60.303 63.158 9.86 0.00 42.81 4.85
128 145 1.302832 CCTTCCCACTGTGACCAGC 60.303 63.158 9.86 0.00 42.81 4.85
129 146 0.764890 TTCCTTCCCACTGTGACCAG 59.235 55.000 9.86 1.48 44.68 4.00
130 147 0.472471 GTTCCTTCCCACTGTGACCA 59.528 55.000 9.86 0.00 0.00 4.02
131 148 0.765510 AGTTCCTTCCCACTGTGACC 59.234 55.000 9.86 0.00 0.00 4.02
132 149 2.640316 AAGTTCCTTCCCACTGTGAC 57.360 50.000 9.86 0.00 0.00 3.67
133 150 2.637872 CCTAAGTTCCTTCCCACTGTGA 59.362 50.000 9.86 0.00 0.00 3.58
134 151 2.637872 TCCTAAGTTCCTTCCCACTGTG 59.362 50.000 0.00 0.00 0.00 3.66
135 152 2.907042 CTCCTAAGTTCCTTCCCACTGT 59.093 50.000 0.00 0.00 0.00 3.55
136 153 2.907042 ACTCCTAAGTTCCTTCCCACTG 59.093 50.000 0.00 0.00 28.74 3.66
137 154 3.277416 ACTCCTAAGTTCCTTCCCACT 57.723 47.619 0.00 0.00 28.74 4.00
138 155 4.285260 TGTTACTCCTAAGTTCCTTCCCAC 59.715 45.833 0.00 0.00 36.92 4.61
139 156 4.495565 TGTTACTCCTAAGTTCCTTCCCA 58.504 43.478 0.00 0.00 36.92 4.37
140 157 5.189145 TGATGTTACTCCTAAGTTCCTTCCC 59.811 44.000 0.00 0.00 36.92 3.97
141 158 6.107343 GTGATGTTACTCCTAAGTTCCTTCC 58.893 44.000 0.00 0.00 36.92 3.46
142 159 6.590677 GTGTGATGTTACTCCTAAGTTCCTTC 59.409 42.308 0.00 0.00 36.92 3.46
143 160 6.042781 TGTGTGATGTTACTCCTAAGTTCCTT 59.957 38.462 0.00 0.00 36.92 3.36
144 161 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
145 162 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
146 163 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
147 164 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
148 165 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
154 171 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
155 172 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
156 173 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
157 174 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
158 175 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
159 176 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
160 177 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
161 178 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
162 179 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
163 180 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
164 181 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
165 182 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
166 183 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
167 184 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
168 185 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
169 186 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
170 187 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
171 188 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
172 189 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
173 190 5.469479 GTGCCACATAAGCAAAGTTGTATT 58.531 37.500 0.00 0.00 43.02 1.89
174 191 4.379394 CGTGCCACATAAGCAAAGTTGTAT 60.379 41.667 0.00 0.00 43.02 2.29
175 192 3.058570 CGTGCCACATAAGCAAAGTTGTA 60.059 43.478 0.00 0.00 43.02 2.41
176 193 2.287547 CGTGCCACATAAGCAAAGTTGT 60.288 45.455 0.00 0.00 43.02 3.32
177 194 2.287547 ACGTGCCACATAAGCAAAGTTG 60.288 45.455 0.00 0.00 43.02 3.16
178 195 1.953686 ACGTGCCACATAAGCAAAGTT 59.046 42.857 0.00 0.00 43.02 2.66
179 196 1.604604 ACGTGCCACATAAGCAAAGT 58.395 45.000 0.00 0.00 43.02 2.66
180 197 4.355543 AATACGTGCCACATAAGCAAAG 57.644 40.909 0.00 0.00 43.02 2.77
181 198 4.775058 AAATACGTGCCACATAAGCAAA 57.225 36.364 0.00 0.00 43.02 3.68
182 199 4.938832 ACTAAATACGTGCCACATAAGCAA 59.061 37.500 0.00 0.00 43.02 3.91
183 200 4.331443 CACTAAATACGTGCCACATAAGCA 59.669 41.667 0.00 0.00 38.08 3.91
184 201 4.569162 TCACTAAATACGTGCCACATAAGC 59.431 41.667 0.00 0.00 32.54 3.09
185 202 6.533723 TCTTCACTAAATACGTGCCACATAAG 59.466 38.462 0.00 0.00 32.54 1.73
186 203 6.399743 TCTTCACTAAATACGTGCCACATAA 58.600 36.000 0.00 0.00 32.54 1.90
187 204 5.968254 TCTTCACTAAATACGTGCCACATA 58.032 37.500 0.00 0.00 32.54 2.29
188 205 4.827692 TCTTCACTAAATACGTGCCACAT 58.172 39.130 0.00 0.00 32.54 3.21
189 206 4.021807 TCTCTTCACTAAATACGTGCCACA 60.022 41.667 0.00 0.00 32.54 4.17
190 207 4.491676 TCTCTTCACTAAATACGTGCCAC 58.508 43.478 0.00 0.00 32.54 5.01
191 208 4.461431 TCTCTCTTCACTAAATACGTGCCA 59.539 41.667 0.00 0.00 32.54 4.92
192 209 4.995124 TCTCTCTTCACTAAATACGTGCC 58.005 43.478 0.00 0.00 32.54 5.01
193 210 5.038033 CCTCTCTCTTCACTAAATACGTGC 58.962 45.833 0.00 0.00 32.54 5.34
194 211 6.030849 CACCTCTCTCTTCACTAAATACGTG 58.969 44.000 0.00 0.00 0.00 4.49
195 212 5.393243 GCACCTCTCTCTTCACTAAATACGT 60.393 44.000 0.00 0.00 0.00 3.57
196 213 5.038033 GCACCTCTCTCTTCACTAAATACG 58.962 45.833 0.00 0.00 0.00 3.06
197 214 6.215495 AGCACCTCTCTCTTCACTAAATAC 57.785 41.667 0.00 0.00 0.00 1.89
198 215 6.211584 ACAAGCACCTCTCTCTTCACTAAATA 59.788 38.462 0.00 0.00 0.00 1.40
199 216 5.012561 ACAAGCACCTCTCTCTTCACTAAAT 59.987 40.000 0.00 0.00 0.00 1.40
200 217 4.345257 ACAAGCACCTCTCTCTTCACTAAA 59.655 41.667 0.00 0.00 0.00 1.85
201 218 3.898123 ACAAGCACCTCTCTCTTCACTAA 59.102 43.478 0.00 0.00 0.00 2.24
202 219 3.256879 CACAAGCACCTCTCTCTTCACTA 59.743 47.826 0.00 0.00 0.00 2.74
203 220 2.036992 CACAAGCACCTCTCTCTTCACT 59.963 50.000 0.00 0.00 0.00 3.41
204 221 2.411904 CACAAGCACCTCTCTCTTCAC 58.588 52.381 0.00 0.00 0.00 3.18
205 222 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
206 223 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
207 224 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
208 225 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
209 226 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
210 227 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
211 228 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
212 229 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
213 230 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
214 231 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
215 232 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
216 233 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
217 234 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
226 243 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
228 245 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
229 246 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
230 247 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
231 248 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
232 249 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
233 250 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
234 251 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
235 252 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
236 253 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
237 254 2.762745 AGTGTGTGATGTTCCGGTAAC 58.237 47.619 0.00 5.56 38.67 2.50
238 255 3.181464 TGAAGTGTGTGATGTTCCGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
239 256 2.365941 TGAAGTGTGTGATGTTCCGGTA 59.634 45.455 0.00 0.00 0.00 4.02
240 257 1.140052 TGAAGTGTGTGATGTTCCGGT 59.860 47.619 0.00 0.00 0.00 5.28
241 258 1.877637 TGAAGTGTGTGATGTTCCGG 58.122 50.000 0.00 0.00 0.00 5.14
242 259 3.961477 TTTGAAGTGTGTGATGTTCCG 57.039 42.857 0.00 0.00 0.00 4.30
278 295 9.801873 GTCATGCAACAATGTATTTATTAGGTT 57.198 29.630 0.00 0.00 28.42 3.50
279 296 8.965819 TGTCATGCAACAATGTATTTATTAGGT 58.034 29.630 0.00 0.00 28.42 3.08
280 297 9.236691 GTGTCATGCAACAATGTATTTATTAGG 57.763 33.333 0.00 0.00 28.42 2.69
283 300 9.787532 GTAGTGTCATGCAACAATGTATTTATT 57.212 29.630 1.88 0.00 28.42 1.40
284 301 8.955388 TGTAGTGTCATGCAACAATGTATTTAT 58.045 29.630 1.88 0.00 28.42 1.40
285 302 8.329203 TGTAGTGTCATGCAACAATGTATTTA 57.671 30.769 1.88 0.00 28.42 1.40
286 303 7.213216 TGTAGTGTCATGCAACAATGTATTT 57.787 32.000 1.88 0.00 28.42 1.40
287 304 6.816134 TGTAGTGTCATGCAACAATGTATT 57.184 33.333 1.88 0.00 28.42 1.89
288 305 7.986889 TCTATGTAGTGTCATGCAACAATGTAT 59.013 33.333 1.88 0.00 31.41 2.29
289 306 7.327214 TCTATGTAGTGTCATGCAACAATGTA 58.673 34.615 1.88 0.00 0.00 2.29
290 307 6.172630 TCTATGTAGTGTCATGCAACAATGT 58.827 36.000 1.88 0.00 0.00 2.71
291 308 6.667007 TCTATGTAGTGTCATGCAACAATG 57.333 37.500 1.88 0.00 0.00 2.82
292 309 6.825213 ACATCTATGTAGTGTCATGCAACAAT 59.175 34.615 0.00 0.00 39.68 2.71
293 310 6.172630 ACATCTATGTAGTGTCATGCAACAA 58.827 36.000 0.00 0.00 39.68 2.83
294 311 5.733676 ACATCTATGTAGTGTCATGCAACA 58.266 37.500 0.00 0.00 39.68 3.33
295 312 6.668541 AACATCTATGTAGTGTCATGCAAC 57.331 37.500 0.00 0.00 40.80 4.17
296 313 7.105588 AGAAACATCTATGTAGTGTCATGCAA 58.894 34.615 0.00 0.00 40.80 4.08
297 314 6.643388 AGAAACATCTATGTAGTGTCATGCA 58.357 36.000 0.00 0.00 40.80 3.96
298 315 7.169982 GGTAGAAACATCTATGTAGTGTCATGC 59.830 40.741 0.00 0.00 40.80 4.06
299 316 7.653713 GGGTAGAAACATCTATGTAGTGTCATG 59.346 40.741 0.00 0.00 40.80 3.07
300 317 7.344612 TGGGTAGAAACATCTATGTAGTGTCAT 59.655 37.037 0.00 0.00 40.80 3.06
301 318 6.666113 TGGGTAGAAACATCTATGTAGTGTCA 59.334 38.462 0.00 0.00 40.80 3.58
302 319 6.979238 GTGGGTAGAAACATCTATGTAGTGTC 59.021 42.308 0.00 0.00 40.80 3.67
303 320 6.668283 AGTGGGTAGAAACATCTATGTAGTGT 59.332 38.462 0.00 0.00 40.80 3.55
304 321 7.113658 AGTGGGTAGAAACATCTATGTAGTG 57.886 40.000 0.00 0.00 40.80 2.74
305 322 8.861086 CATAGTGGGTAGAAACATCTATGTAGT 58.139 37.037 0.00 0.00 40.80 2.73
306 323 8.307483 CCATAGTGGGTAGAAACATCTATGTAG 58.693 40.741 0.00 0.00 35.14 2.74
307 324 8.008332 TCCATAGTGGGTAGAAACATCTATGTA 58.992 37.037 0.00 0.00 37.90 2.29
308 325 6.844388 TCCATAGTGGGTAGAAACATCTATGT 59.156 38.462 0.00 0.00 39.54 2.29
309 326 7.303182 TCCATAGTGGGTAGAAACATCTATG 57.697 40.000 0.00 0.00 38.32 2.23
310 327 7.931015 TTCCATAGTGGGTAGAAACATCTAT 57.069 36.000 0.00 0.00 38.32 1.98
311 328 7.147549 CCTTTCCATAGTGGGTAGAAACATCTA 60.148 40.741 0.00 0.00 38.32 1.98
312 329 6.353082 CCTTTCCATAGTGGGTAGAAACATCT 60.353 42.308 0.00 0.00 38.32 2.90
313 330 5.823045 CCTTTCCATAGTGGGTAGAAACATC 59.177 44.000 0.00 0.00 38.32 3.06
314 331 5.491078 TCCTTTCCATAGTGGGTAGAAACAT 59.509 40.000 0.00 0.00 38.32 2.71
315 332 4.847512 TCCTTTCCATAGTGGGTAGAAACA 59.152 41.667 0.00 0.00 38.32 2.83
316 333 5.429130 CTCCTTTCCATAGTGGGTAGAAAC 58.571 45.833 0.00 0.00 38.32 2.78
317 334 4.473559 CCTCCTTTCCATAGTGGGTAGAAA 59.526 45.833 0.00 0.00 38.32 2.52
318 335 4.037927 CCTCCTTTCCATAGTGGGTAGAA 58.962 47.826 0.00 0.00 38.32 2.10
319 336 3.273886 TCCTCCTTTCCATAGTGGGTAGA 59.726 47.826 0.00 0.00 38.32 2.59
320 337 3.643792 CTCCTCCTTTCCATAGTGGGTAG 59.356 52.174 0.00 0.00 38.32 3.18
321 338 3.013648 ACTCCTCCTTTCCATAGTGGGTA 59.986 47.826 0.00 0.00 38.32 3.69
322 339 2.225908 ACTCCTCCTTTCCATAGTGGGT 60.226 50.000 0.00 0.00 38.32 4.51
323 340 2.482494 ACTCCTCCTTTCCATAGTGGG 58.518 52.381 0.00 0.00 38.32 4.61
324 341 4.469945 TGTTACTCCTCCTTTCCATAGTGG 59.530 45.833 0.00 0.00 39.43 4.00
325 342 5.677319 TGTTACTCCTCCTTTCCATAGTG 57.323 43.478 0.00 0.00 0.00 2.74
326 343 7.133483 ACTATGTTACTCCTCCTTTCCATAGT 58.867 38.462 0.00 0.00 39.05 2.12
327 344 7.507616 AGACTATGTTACTCCTCCTTTCCATAG 59.492 40.741 0.00 0.00 37.56 2.23
328 345 7.363031 AGACTATGTTACTCCTCCTTTCCATA 58.637 38.462 0.00 0.00 0.00 2.74
329 346 6.206042 AGACTATGTTACTCCTCCTTTCCAT 58.794 40.000 0.00 0.00 0.00 3.41
330 347 5.590818 AGACTATGTTACTCCTCCTTTCCA 58.409 41.667 0.00 0.00 0.00 3.53
331 348 6.265876 CCTAGACTATGTTACTCCTCCTTTCC 59.734 46.154 0.00 0.00 0.00 3.13
332 349 6.265876 CCCTAGACTATGTTACTCCTCCTTTC 59.734 46.154 0.00 0.00 0.00 2.62
333 350 6.068379 TCCCTAGACTATGTTACTCCTCCTTT 60.068 42.308 0.00 0.00 0.00 3.11
334 351 5.435707 TCCCTAGACTATGTTACTCCTCCTT 59.564 44.000 0.00 0.00 0.00 3.36
335 352 4.982956 TCCCTAGACTATGTTACTCCTCCT 59.017 45.833 0.00 0.00 0.00 3.69
336 353 5.321934 TCCCTAGACTATGTTACTCCTCC 57.678 47.826 0.00 0.00 0.00 4.30
337 354 6.263617 CACTTCCCTAGACTATGTTACTCCTC 59.736 46.154 0.00 0.00 0.00 3.71
338 355 6.130569 CACTTCCCTAGACTATGTTACTCCT 58.869 44.000 0.00 0.00 0.00 3.69
339 356 5.892686 ACACTTCCCTAGACTATGTTACTCC 59.107 44.000 0.00 0.00 0.00 3.85
340 357 6.377712 ACACACTTCCCTAGACTATGTTACTC 59.622 42.308 0.00 0.00 0.00 2.59
341 358 6.254522 ACACACTTCCCTAGACTATGTTACT 58.745 40.000 0.00 0.00 0.00 2.24
342 359 6.527057 ACACACTTCCCTAGACTATGTTAC 57.473 41.667 0.00 0.00 0.00 2.50
343 360 7.892241 ACTTACACACTTCCCTAGACTATGTTA 59.108 37.037 0.00 0.00 0.00 2.41
344 361 6.724905 ACTTACACACTTCCCTAGACTATGTT 59.275 38.462 0.00 0.00 0.00 2.71
345 362 6.254522 ACTTACACACTTCCCTAGACTATGT 58.745 40.000 0.00 0.00 0.00 2.29
346 363 6.777213 ACTTACACACTTCCCTAGACTATG 57.223 41.667 0.00 0.00 0.00 2.23
347 364 8.114743 AGTAACTTACACACTTCCCTAGACTAT 58.885 37.037 1.79 0.00 0.00 2.12
348 365 7.465116 AGTAACTTACACACTTCCCTAGACTA 58.535 38.462 1.79 0.00 0.00 2.59
349 366 6.313324 AGTAACTTACACACTTCCCTAGACT 58.687 40.000 1.79 0.00 0.00 3.24
350 367 6.587206 AGTAACTTACACACTTCCCTAGAC 57.413 41.667 1.79 0.00 0.00 2.59
351 368 6.376581 GCTAGTAACTTACACACTTCCCTAGA 59.623 42.308 1.79 0.00 0.00 2.43
352 369 6.377712 AGCTAGTAACTTACACACTTCCCTAG 59.622 42.308 1.79 0.00 0.00 3.02
353 370 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
354 371 5.085219 AGCTAGTAACTTACACACTTCCCT 58.915 41.667 1.79 0.00 0.00 4.20
355 372 5.402997 AGCTAGTAACTTACACACTTCCC 57.597 43.478 1.79 0.00 0.00 3.97
356 373 8.033626 ACATAAGCTAGTAACTTACACACTTCC 58.966 37.037 1.79 0.00 32.67 3.46
357 374 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
358 375 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
359 376 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
360 377 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
361 378 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
362 379 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
363 380 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
364 381 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
365 382 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
366 383 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
367 384 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
368 385 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
369 386 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
370 387 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
371 388 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
372 389 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
373 390 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
374 391 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
375 392 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
376 393 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
377 394 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
378 395 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
379 396 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
380 397 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
381 398 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
382 399 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
383 400 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
384 401 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
385 402 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
386 403 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
387 404 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
388 405 2.214376 TTTAGGCTGGTCACAATGGG 57.786 50.000 0.00 0.00 0.00 4.00
389 406 2.428171 CCATTTAGGCTGGTCACAATGG 59.572 50.000 0.00 1.99 35.89 3.16
390 407 3.355378 TCCATTTAGGCTGGTCACAATG 58.645 45.455 0.00 0.00 37.29 2.82
391 408 3.737559 TCCATTTAGGCTGGTCACAAT 57.262 42.857 0.00 0.00 37.29 2.71
392 409 3.517296 TTCCATTTAGGCTGGTCACAA 57.483 42.857 0.00 0.00 37.29 3.33
393 410 3.517296 TTTCCATTTAGGCTGGTCACA 57.483 42.857 0.00 0.00 37.29 3.58
394 411 3.429410 GCATTTCCATTTAGGCTGGTCAC 60.429 47.826 0.00 0.00 37.29 3.67
395 412 2.760092 GCATTTCCATTTAGGCTGGTCA 59.240 45.455 0.00 0.00 37.29 4.02
396 413 2.101415 GGCATTTCCATTTAGGCTGGTC 59.899 50.000 0.00 0.00 37.29 4.02
397 414 2.110578 GGCATTTCCATTTAGGCTGGT 58.889 47.619 0.00 0.00 37.29 4.00
398 415 2.391678 AGGCATTTCCATTTAGGCTGG 58.608 47.619 0.00 0.00 37.29 4.85
399 416 4.476628 AAAGGCATTTCCATTTAGGCTG 57.523 40.909 0.00 0.00 37.29 4.85
400 417 4.531732 TGAAAAGGCATTTCCATTTAGGCT 59.468 37.500 12.18 0.00 45.67 4.58
401 418 4.831107 TGAAAAGGCATTTCCATTTAGGC 58.169 39.130 12.18 0.00 45.67 3.93
402 419 6.709846 TGTTTGAAAAGGCATTTCCATTTAGG 59.290 34.615 12.18 0.00 45.67 2.69
403 420 7.727331 TGTTTGAAAAGGCATTTCCATTTAG 57.273 32.000 12.18 0.00 45.67 1.85
404 421 8.511604 TTTGTTTGAAAAGGCATTTCCATTTA 57.488 26.923 12.18 0.00 45.67 1.40
405 422 7.338957 TCTTTGTTTGAAAAGGCATTTCCATTT 59.661 29.630 12.18 0.00 45.67 2.32
406 423 6.827762 TCTTTGTTTGAAAAGGCATTTCCATT 59.172 30.769 12.18 0.00 45.67 3.16
428 445 7.962964 TTCTCGAATTAACTCAACATGTCTT 57.037 32.000 0.00 0.00 0.00 3.01
489 506 4.142816 CCGGATAAGCTTATTGTATGCAGC 60.143 45.833 19.77 4.22 0.00 5.25
647 983 5.065731 GCAAATTCTAGTGGATTGACAGGAG 59.934 44.000 0.00 0.00 0.00 3.69
653 989 4.158394 GCCTTGCAAATTCTAGTGGATTGA 59.842 41.667 0.00 0.00 0.00 2.57
717 1053 0.802607 GGCGAGGCTCAACTTCTACG 60.803 60.000 15.95 0.00 0.00 3.51
736 1072 3.043713 TTTGCCAGCTCTGCGTCG 61.044 61.111 0.65 0.00 0.00 5.12
815 1164 3.935818 TTGGGAGTGGAGTTGTTTACA 57.064 42.857 0.00 0.00 0.00 2.41
841 1190 5.045872 GCAGAAGCAGATTGTTTGACTTTT 58.954 37.500 0.00 0.00 41.58 2.27
842 1191 4.340381 AGCAGAAGCAGATTGTTTGACTTT 59.660 37.500 0.00 0.00 45.49 2.66
925 1285 4.729918 GTCTGGGCTGGGCTGGTG 62.730 72.222 0.00 0.00 0.00 4.17
927 1287 4.421515 CTGTCTGGGCTGGGCTGG 62.422 72.222 0.00 0.00 0.00 4.85
930 1290 4.792804 GAGCTGTCTGGGCTGGGC 62.793 72.222 0.00 0.00 40.40 5.36
931 1291 4.106925 GGAGCTGTCTGGGCTGGG 62.107 72.222 0.00 0.00 40.40 4.45
932 1292 4.463879 CGGAGCTGTCTGGGCTGG 62.464 72.222 0.00 0.00 40.40 4.85
933 1293 3.655810 GACGGAGCTGTCTGGGCTG 62.656 68.421 0.00 0.00 40.40 4.85
989 1349 4.968032 GCGGCATTGCGTACTTAC 57.032 55.556 1.91 0.00 0.00 2.34
1215 1575 3.075005 ATGACCGGGTCCGTCCTG 61.075 66.667 23.81 0.00 42.06 3.86
1430 1790 3.856508 CGAGTTCGTGGCGTTGAT 58.143 55.556 0.00 0.00 34.11 2.57
1529 1889 1.434513 AAATCCACTCCAGCCCACCA 61.435 55.000 0.00 0.00 0.00 4.17
1530 1890 0.251787 AAAATCCACTCCAGCCCACC 60.252 55.000 0.00 0.00 0.00 4.61
1531 1891 1.177401 GAAAATCCACTCCAGCCCAC 58.823 55.000 0.00 0.00 0.00 4.61
1604 1964 2.222027 GAACACACAAGTCCCAAGAGG 58.778 52.381 0.00 0.00 0.00 3.69
1632 1995 7.519008 GCCACGTAAATAAGGAGATTCTCAATG 60.519 40.741 15.36 0.76 31.08 2.82
1635 1998 5.128827 AGCCACGTAAATAAGGAGATTCTCA 59.871 40.000 15.36 0.00 31.08 3.27
1712 3051 2.060326 TGCTTCGACGTGGTTCTTAG 57.940 50.000 0.00 0.00 0.00 2.18
1717 3056 2.228138 TACTTTGCTTCGACGTGGTT 57.772 45.000 0.00 0.00 0.00 3.67
1875 3215 2.851824 TGACATCGTTCGATCGATTGTG 59.148 45.455 24.71 18.76 46.31 3.33
2032 3412 2.907042 AGCTACTCTGTAAGCCAACCTT 59.093 45.455 0.00 0.00 39.64 3.50
2048 3428 1.032657 TCTGACCTCCAGCGAGCTAC 61.033 60.000 0.00 0.00 42.62 3.58
2049 3429 0.749818 CTCTGACCTCCAGCGAGCTA 60.750 60.000 0.00 0.00 42.62 3.32
2065 3445 1.276421 CATCGTTTGGTCCTGGTCTCT 59.724 52.381 0.00 0.00 0.00 3.10
2067 3447 1.348064 TCATCGTTTGGTCCTGGTCT 58.652 50.000 0.00 0.00 0.00 3.85
2071 3451 2.350522 CTCCTTCATCGTTTGGTCCTG 58.649 52.381 0.00 0.00 0.00 3.86
2097 3477 2.046988 TGTGCCAGCTCATCGTGG 60.047 61.111 0.00 0.00 36.85 4.94
2098 3478 2.393768 GGTGTGCCAGCTCATCGTG 61.394 63.158 0.00 0.00 34.09 4.35
2100 3480 3.190849 CGGTGTGCCAGCTCATCG 61.191 66.667 12.26 12.26 37.63 3.84
2133 3513 1.725641 TCCATCATGACAGCGTTGAC 58.274 50.000 6.16 0.00 0.00 3.18
2146 3526 2.293318 ACCGGCTGCTCTTCCATCA 61.293 57.895 0.00 0.00 0.00 3.07
2148 3528 2.270205 CACCGGCTGCTCTTCCAT 59.730 61.111 0.00 0.00 0.00 3.41
2178 3558 4.208686 CTACGCCTGCCGGGACTC 62.209 72.222 2.18 0.00 42.52 3.36
2192 3580 1.811679 GTTGCGCTGCTCCTCCTAC 60.812 63.158 9.73 0.00 0.00 3.18
2216 3604 2.032528 TGCTTGTTGAGGAGCCGG 59.967 61.111 0.00 0.00 38.11 6.13
2243 3631 3.098555 CCGGCGATTTTTCCCTCG 58.901 61.111 9.30 0.00 37.92 4.63
2258 3646 4.753877 TCGTTCTCGTGCTCGCCG 62.754 66.667 2.69 3.51 38.33 6.46
2268 3656 1.812214 GCGACGGCATCATCGTTCTC 61.812 60.000 0.00 0.00 41.22 2.87
2299 3687 0.820226 CGCTGGACTCTGATCTTCCA 59.180 55.000 0.00 0.27 37.07 3.53
2300 3688 0.820871 ACGCTGGACTCTGATCTTCC 59.179 55.000 0.00 0.00 0.00 3.46
2317 3705 3.379625 GATGTCGCGAGCGCTACG 61.380 66.667 22.47 22.47 39.29 3.51
2318 3706 3.025176 GGATGTCGCGAGCGCTAC 61.025 66.667 11.50 12.54 39.59 3.58
2319 3707 2.733171 GATGGATGTCGCGAGCGCTA 62.733 60.000 11.50 0.00 39.59 4.26
2320 3708 4.212913 ATGGATGTCGCGAGCGCT 62.213 61.111 11.27 11.27 39.59 5.92
2321 3709 3.696426 GATGGATGTCGCGAGCGC 61.696 66.667 10.24 0.00 39.59 5.92
2322 3710 3.390017 CGATGGATGTCGCGAGCG 61.390 66.667 10.24 11.64 41.35 5.03
2328 3716 1.202568 GCGATTGCGATGGATGTCG 59.797 57.895 0.00 0.00 44.14 4.35
2329 3717 1.571460 GGCGATTGCGATGGATGTC 59.429 57.895 0.00 0.00 44.10 3.06
2330 3718 2.246739 CGGCGATTGCGATGGATGT 61.247 57.895 0.00 0.00 44.10 3.06
2331 3719 2.552768 CGGCGATTGCGATGGATG 59.447 61.111 0.00 0.00 44.10 3.51
2332 3720 2.666190 CCGGCGATTGCGATGGAT 60.666 61.111 9.30 0.00 44.10 3.41
2387 3775 1.451567 TGTCTCTCTCCGCCCGTAG 60.452 63.158 0.00 0.00 0.00 3.51
2388 3776 1.748122 GTGTCTCTCTCCGCCCGTA 60.748 63.158 0.00 0.00 0.00 4.02
2389 3777 3.063084 GTGTCTCTCTCCGCCCGT 61.063 66.667 0.00 0.00 0.00 5.28
2390 3778 3.827898 GGTGTCTCTCTCCGCCCG 61.828 72.222 0.00 0.00 0.00 6.13
2391 3779 3.462678 GGGTGTCTCTCTCCGCCC 61.463 72.222 0.00 0.00 43.70 6.13
2392 3780 2.363147 AGGGTGTCTCTCTCCGCC 60.363 66.667 0.00 0.00 0.00 6.13
2393 3781 3.202467 GAGGGTGTCTCTCTCCGC 58.798 66.667 0.00 0.00 37.69 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.