Multiple sequence alignment - TraesCS6B01G210800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G210800 chr6B 100.000 3739 0 0 1 3739 278677542 278673804 0.000000e+00 6905.0
1 TraesCS6B01G210800 chr6B 100.000 2406 0 0 4072 6477 278673471 278671066 0.000000e+00 4444.0
2 TraesCS6B01G210800 chr6D 95.389 3318 100 15 421 3733 155604433 155601164 0.000000e+00 5230.0
3 TraesCS6B01G210800 chr6D 90.494 1599 89 19 4922 6475 155600173 155598593 0.000000e+00 2052.0
4 TraesCS6B01G210800 chr6D 93.111 900 30 7 4075 4966 155601049 155600174 0.000000e+00 1290.0
5 TraesCS6B01G210800 chr6D 89.737 380 17 2 1 380 155605065 155604708 3.540000e-127 466.0
6 TraesCS6B01G210800 chr6A 94.807 2311 65 7 824 3133 209393394 209391138 0.000000e+00 3552.0
7 TraesCS6B01G210800 chr6A 92.673 2443 128 19 4074 6475 209390002 209387570 0.000000e+00 3472.0
8 TraesCS6B01G210800 chr6A 96.224 715 19 3 3019 3733 209391139 209390433 0.000000e+00 1164.0
9 TraesCS6B01G210800 chr7B 95.402 87 4 0 2844 2930 13801853 13801939 8.760000e-29 139.0
10 TraesCS6B01G210800 chr7B 83.333 78 11 2 3415 3491 512356504 512356428 3.240000e-08 71.3
11 TraesCS6B01G210800 chr1D 95.455 88 2 2 2846 2933 298568641 298568556 8.760000e-29 139.0
12 TraesCS6B01G210800 chr1D 94.318 88 5 0 2846 2933 141706060 141705973 1.130000e-27 135.0
13 TraesCS6B01G210800 chr1B 95.455 88 3 1 2846 2933 401619037 401618951 8.760000e-29 139.0
14 TraesCS6B01G210800 chr3D 93.478 92 6 0 2839 2930 108916255 108916346 3.150000e-28 137.0
15 TraesCS6B01G210800 chr3A 73.901 364 83 10 5849 6204 724953656 724954015 1.130000e-27 135.0
16 TraesCS6B01G210800 chr1A 94.318 88 5 0 2846 2933 372237242 372237155 1.130000e-27 135.0
17 TraesCS6B01G210800 chr4B 94.186 86 5 0 2845 2930 270831670 270831755 1.470000e-26 132.0
18 TraesCS6B01G210800 chr7D 83.333 78 11 2 3415 3491 484926959 484926883 3.240000e-08 71.3
19 TraesCS6B01G210800 chr7A 83.333 78 11 2 3415 3491 553232320 553232244 3.240000e-08 71.3
20 TraesCS6B01G210800 chr4A 93.182 44 3 0 6112 6155 236163355 236163398 1.510000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G210800 chr6B 278671066 278677542 6476 True 5674.500000 6905 100.00000 1 6477 2 chr6B.!!$R1 6476
1 TraesCS6B01G210800 chr6D 155598593 155605065 6472 True 2259.500000 5230 92.18275 1 6475 4 chr6D.!!$R1 6474
2 TraesCS6B01G210800 chr6A 209387570 209393394 5824 True 2729.333333 3552 94.56800 824 6475 3 chr6A.!!$R1 5651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 960 0.035152 ATCACACATCACCGCACCAT 60.035 50.000 0.00 0.00 0.00 3.55 F
1268 1506 0.324614 TCTTGGCCGCAGATCTTGAA 59.675 50.000 0.00 0.00 0.00 2.69 F
1364 1602 1.202604 TCCTCACTGTGGGAACGAAAC 60.203 52.381 9.77 0.00 0.00 2.78 F
2663 2901 1.468985 CCTCAGACGGTCAGACATCT 58.531 55.000 11.27 1.76 0.00 2.90 F
3735 4086 1.827344 GAATCCCTGGCTTTTCAAGGG 59.173 52.381 0.21 0.21 41.03 3.95 F
4983 5499 0.037605 AAGCACGGAGGACCTAAACG 60.038 55.000 10.24 10.24 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2389 0.741326 AGTCTGCATGCGATACTCGT 59.259 50.000 14.09 0.00 42.81 4.18 R
2773 3011 2.023673 CTTGTTGAGGTTTGTGGCAGA 58.976 47.619 0.00 0.00 0.00 4.26 R
3071 3422 2.103373 GGGAAAAGGAAGAATGGAGCC 58.897 52.381 0.00 0.00 0.00 4.70 R
4348 4819 0.103937 GATCTTGTCTCGAGGCCCTG 59.896 60.000 15.72 4.62 0.00 4.45 R
5084 5600 0.728466 CGTCGAGTTCTTGGTCGTCC 60.728 60.000 0.00 0.00 37.46 4.79 R
5999 6568 0.322546 GGCCTCGGTCCACAGAAAAT 60.323 55.000 0.00 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.846248 GATTCATATCTACAAAGCAACAACTTT 57.154 29.630 0.00 0.00 40.49 2.66
55 56 2.670210 CGAAGACTGCATGCACGCA 61.670 57.895 18.46 7.45 40.32 5.24
90 91 6.882678 GGTAACAAGAGTTTGATAAGGGCTTA 59.117 38.462 0.00 0.00 39.15 3.09
96 97 8.689972 CAAGAGTTTGATAAGGGCTTATTCAAT 58.310 33.333 0.00 0.00 36.02 2.57
131 132 2.290071 ACACCCCTAAATGTTCGGACTG 60.290 50.000 0.00 0.00 0.00 3.51
133 134 1.339631 CCCCTAAATGTTCGGACTGCA 60.340 52.381 0.00 0.00 0.00 4.41
156 157 0.106419 TCCGGTCACTTTTTGCCCTT 60.106 50.000 0.00 0.00 0.00 3.95
160 161 2.035832 CGGTCACTTTTTGCCCTTCAAT 59.964 45.455 0.00 0.00 34.12 2.57
161 162 3.392882 GGTCACTTTTTGCCCTTCAATG 58.607 45.455 0.00 0.00 34.12 2.82
177 178 5.181245 CCTTCAATGTCGTGTATCAAACCTT 59.819 40.000 0.00 0.00 0.00 3.50
191 192 0.249741 AACCTTCGTGGACCAGTTCG 60.250 55.000 0.00 0.00 39.71 3.95
283 284 4.753516 CCACTGTGGGAATATGTACTCA 57.246 45.455 19.23 0.00 32.67 3.41
284 285 4.442706 CCACTGTGGGAATATGTACTCAC 58.557 47.826 19.23 0.00 37.92 3.51
285 286 4.081142 CCACTGTGGGAATATGTACTCACA 60.081 45.833 19.23 0.00 43.81 3.58
286 287 5.487433 CACTGTGGGAATATGTACTCACAA 58.513 41.667 0.00 0.00 45.01 3.33
287 288 5.351465 CACTGTGGGAATATGTACTCACAAC 59.649 44.000 0.00 0.00 45.01 3.32
288 289 4.839121 TGTGGGAATATGTACTCACAACC 58.161 43.478 7.69 0.00 43.21 3.77
289 290 4.196971 GTGGGAATATGTACTCACAACCC 58.803 47.826 0.00 0.00 38.42 4.11
290 291 3.847184 TGGGAATATGTACTCACAACCCA 59.153 43.478 0.00 0.00 41.26 4.51
291 292 4.476846 TGGGAATATGTACTCACAACCCAT 59.523 41.667 0.00 0.00 40.01 4.00
292 293 4.821805 GGGAATATGTACTCACAACCCATG 59.178 45.833 0.00 0.00 38.42 3.66
293 294 5.437060 GGAATATGTACTCACAACCCATGT 58.563 41.667 0.00 0.00 45.34 3.21
318 319 2.910688 TTCAAGTCTGTCTGACCCAC 57.089 50.000 5.17 1.85 46.46 4.61
391 392 4.505808 TCCGAAATTACATTTAGGACGCA 58.494 39.130 6.90 0.00 45.23 5.24
392 393 4.569162 TCCGAAATTACATTTAGGACGCAG 59.431 41.667 6.90 0.00 45.23 5.18
393 394 4.331717 CCGAAATTACATTTAGGACGCAGT 59.668 41.667 3.01 0.00 44.69 4.40
394 395 5.490213 CGAAATTACATTTAGGACGCAGTC 58.510 41.667 0.79 0.79 44.66 3.51
428 663 5.265350 GGCAACCAAACCTTACAAAGTTA 57.735 39.130 0.00 0.00 0.00 2.24
434 669 7.046292 ACCAAACCTTACAAAGTTATTCACC 57.954 36.000 0.00 0.00 0.00 4.02
439 674 7.974482 ACCTTACAAAGTTATTCACCTACAC 57.026 36.000 0.00 0.00 0.00 2.90
456 691 8.526147 TCACCTACACCAACTTCTAACTTATAC 58.474 37.037 0.00 0.00 0.00 1.47
476 711 3.517602 ACGCGACAATATTAGCAGAACA 58.482 40.909 15.93 0.00 0.00 3.18
503 738 6.360681 CGAATCCAAACAACTCTGAAATTCAC 59.639 38.462 0.00 0.00 0.00 3.18
531 766 5.707764 AGTTTTAAGCAACTCCTTGATCTCC 59.292 40.000 0.00 0.00 30.76 3.71
605 840 1.478916 TCTCAACACCACACTCGACAA 59.521 47.619 0.00 0.00 0.00 3.18
610 845 0.655733 CACCACACTCGACAACAACC 59.344 55.000 0.00 0.00 0.00 3.77
648 884 0.318275 GCTAGGATCTCCACGCTTCG 60.318 60.000 0.00 0.00 38.89 3.79
660 896 0.744414 ACGCTTCGGGATCAACATGG 60.744 55.000 0.00 0.00 0.00 3.66
675 911 8.469200 GGATCAACATGGTTCTGAAATAAATGA 58.531 33.333 0.00 0.00 0.00 2.57
683 919 7.206687 TGGTTCTGAAATAAATGACAAACACC 58.793 34.615 0.00 0.00 0.00 4.16
686 922 5.533154 TCTGAAATAAATGACAAACACCGGT 59.467 36.000 0.00 0.00 0.00 5.28
689 925 5.776173 AATAAATGACAAACACCGGTCAA 57.224 34.783 2.59 0.00 46.10 3.18
724 960 0.035152 ATCACACATCACCGCACCAT 60.035 50.000 0.00 0.00 0.00 3.55
727 963 0.035152 ACACATCACCGCACCATCAT 60.035 50.000 0.00 0.00 0.00 2.45
740 976 3.132646 GCACCATCATCACTCTTCTCTCT 59.867 47.826 0.00 0.00 0.00 3.10
783 1019 3.058224 CCGAGTTGATTTTGACCCTGTTC 60.058 47.826 0.00 0.00 0.00 3.18
796 1032 5.650283 TGACCCTGTTCCTGGAATTTAATT 58.350 37.500 13.07 0.00 0.00 1.40
797 1033 5.714806 TGACCCTGTTCCTGGAATTTAATTC 59.285 40.000 13.07 9.03 38.55 2.17
800 1036 6.787458 ACCCTGTTCCTGGAATTTAATTCTTT 59.213 34.615 13.07 0.00 39.24 2.52
808 1044 9.270707 TCCTGGAATTTAATTCTTTTGGATGAT 57.729 29.630 16.02 0.00 39.24 2.45
822 1058 2.959030 TGGATGATCGACTCCCTTACTG 59.041 50.000 7.77 0.00 0.00 2.74
835 1071 2.742053 CCCTTACTGTTGTTCATGTCCG 59.258 50.000 0.00 0.00 0.00 4.79
1214 1452 2.203728 TGGTGCCACCGTCCTAGT 60.204 61.111 9.78 0.00 42.58 2.57
1268 1506 0.324614 TCTTGGCCGCAGATCTTGAA 59.675 50.000 0.00 0.00 0.00 2.69
1364 1602 1.202604 TCCTCACTGTGGGAACGAAAC 60.203 52.381 9.77 0.00 0.00 2.78
1437 1675 2.869801 TGGTGTTAGTTTCTTCACGCAG 59.130 45.455 0.00 0.00 0.00 5.18
1439 1677 2.223377 GTGTTAGTTTCTTCACGCAGGG 59.777 50.000 0.00 0.00 0.00 4.45
1716 1954 5.989168 GCAGGGGTTATTAATAAATTGTGCC 59.011 40.000 9.48 5.75 0.00 5.01
1832 2070 3.450115 GGTGTAGAGGAGCGCGGT 61.450 66.667 12.23 12.23 0.00 5.68
1925 2163 2.777536 TGGAGAAGCCACCTCACAT 58.222 52.632 0.00 0.00 43.33 3.21
2042 2280 7.559335 TCTACATGATGTGCTTATAGGGAAT 57.441 36.000 8.61 0.00 0.00 3.01
2056 2294 2.893424 AGGGAATTGCAAGTCATGGTT 58.107 42.857 26.35 4.01 0.00 3.67
2428 2666 7.017498 TGTTTCTGCGTTATTTCTTGTGTAA 57.983 32.000 0.00 0.00 0.00 2.41
2462 2700 3.305709 TGTTTTGAGACAGAGCGGG 57.694 52.632 0.00 0.00 0.00 6.13
2467 2705 3.478857 TTTGAGACAGAGCGGGTTTTA 57.521 42.857 0.00 0.00 0.00 1.52
2520 2758 8.712285 TTAGTAATCAAGATAAGTTCCAACCG 57.288 34.615 0.00 0.00 0.00 4.44
2551 2789 6.930731 TGGTGCCATTTAAAGATAAACCTTC 58.069 36.000 9.77 0.00 33.98 3.46
2553 2791 5.515270 GTGCCATTTAAAGATAAACCTTCGC 59.485 40.000 0.00 0.00 33.98 4.70
2557 2795 6.751888 CCATTTAAAGATAAACCTTCGCTTGG 59.248 38.462 0.00 0.00 33.98 3.61
2570 2808 5.186409 ACCTTCGCTTGGTAGTTAGTGATTA 59.814 40.000 0.00 0.00 35.80 1.75
2663 2901 1.468985 CCTCAGACGGTCAGACATCT 58.531 55.000 11.27 1.76 0.00 2.90
2674 2912 4.452114 CGGTCAGACATCTGTTCAATTGAA 59.548 41.667 16.91 16.91 44.12 2.69
2675 2913 5.049474 CGGTCAGACATCTGTTCAATTGAAA 60.049 40.000 22.07 7.95 44.12 2.69
2676 2914 6.348786 CGGTCAGACATCTGTTCAATTGAAAT 60.349 38.462 22.07 9.96 44.12 2.17
2677 2915 7.148423 CGGTCAGACATCTGTTCAATTGAAATA 60.148 37.037 22.07 13.19 44.12 1.40
2678 2916 8.514594 GGTCAGACATCTGTTCAATTGAAATAA 58.485 33.333 22.07 10.67 44.12 1.40
2773 3011 6.986817 ACCTTTTCATCTCGTCATTTATCGAT 59.013 34.615 2.16 2.16 35.57 3.59
2934 3172 1.893801 AGGAACAGAGGGTGTACTTCG 59.106 52.381 0.00 0.00 39.03 3.79
2980 3218 5.470098 TCAGTTGAAGTATTGTGCTTCCTTC 59.530 40.000 5.54 0.00 41.03 3.46
2988 3226 6.479884 AGTATTGTGCTTCCTTCTCTCATTT 58.520 36.000 0.00 0.00 0.00 2.32
3069 3420 9.020731 GGTCTTTGGGAATTTCTCTTACATTTA 57.979 33.333 0.00 0.00 0.00 1.40
3337 3688 8.768501 AAAAAGAAGAGAGGTAATTTCTGGTT 57.231 30.769 0.00 0.00 30.77 3.67
3369 3720 6.437162 CCTGTTTCCCTGATTTTATTTGGAGA 59.563 38.462 0.00 0.00 0.00 3.71
3431 3782 8.185505 CCCAATATATAGTTCTACTCGAAGCTC 58.814 40.741 0.00 0.00 30.85 4.09
3521 3872 8.506168 TGTGTTATCTCTTGGAAATGTTATCC 57.494 34.615 0.00 0.00 37.48 2.59
3522 3873 8.106462 TGTGTTATCTCTTGGAAATGTTATCCA 58.894 33.333 0.00 0.00 45.09 3.41
3640 3991 5.337578 AAAGCTTAAAGTTCAAGGCAACA 57.662 34.783 0.00 0.00 41.41 3.33
3667 4018 2.895424 AAGCTTCTCCCCACCACCG 61.895 63.158 0.00 0.00 0.00 4.94
3733 4084 3.424703 TCTGAATCCCTGGCTTTTCAAG 58.575 45.455 0.00 0.00 0.00 3.02
3734 4085 2.494870 CTGAATCCCTGGCTTTTCAAGG 59.505 50.000 0.00 0.00 0.00 3.61
3735 4086 1.827344 GAATCCCTGGCTTTTCAAGGG 59.173 52.381 0.21 0.21 41.03 3.95
4147 4605 7.716612 ACAGGACTTCAGGAAAACATTAAAAG 58.283 34.615 0.00 0.00 0.00 2.27
4196 4654 2.288152 GGAACTTTCCATGCGCTCAAAA 60.288 45.455 9.73 3.37 46.76 2.44
4280 4738 6.830324 GGATATTATAGCTGCATTTGGATGGA 59.170 38.462 1.02 0.00 33.72 3.41
4303 4761 2.310538 GCTGTTGCAGGGCCTTTATAT 58.689 47.619 1.32 0.00 39.41 0.86
4341 4812 2.869101 TGGCAGTTAAGGTACATGCA 57.131 45.000 0.00 0.00 38.63 3.96
4342 4813 3.147553 TGGCAGTTAAGGTACATGCAA 57.852 42.857 0.00 0.00 38.63 4.08
4343 4814 3.491342 TGGCAGTTAAGGTACATGCAAA 58.509 40.909 0.00 0.00 38.63 3.68
4344 4815 3.891977 TGGCAGTTAAGGTACATGCAAAA 59.108 39.130 0.00 0.00 38.63 2.44
4345 4816 4.234574 GGCAGTTAAGGTACATGCAAAAC 58.765 43.478 0.00 0.00 38.63 2.43
4346 4817 4.022329 GGCAGTTAAGGTACATGCAAAACT 60.022 41.667 0.00 0.00 38.63 2.66
4347 4818 4.917415 GCAGTTAAGGTACATGCAAAACTG 59.083 41.667 15.34 15.34 43.14 3.16
4348 4819 4.917415 CAGTTAAGGTACATGCAAAACTGC 59.083 41.667 10.40 0.00 36.87 4.40
4355 4826 2.123338 TGCAAAACTGCAGGGCCT 60.123 55.556 19.93 0.00 40.23 5.19
4356 4827 2.202395 TGCAAAACTGCAGGGCCTC 61.202 57.895 19.93 4.67 40.23 4.70
4381 4852 8.496751 TCGAGACAAGATCAATATTAGTACTCG 58.503 37.037 0.00 0.00 41.03 4.18
4462 4933 6.856135 TGCAGCATTCTAGTCTATTCAATG 57.144 37.500 0.00 0.00 0.00 2.82
4561 5032 8.500753 TTAAAGCGACTATGAACCAATTGTAT 57.499 30.769 4.43 0.00 0.00 2.29
4580 5051 2.512692 TGCTACCATGGTGCTGAATT 57.487 45.000 28.17 0.00 0.00 2.17
4610 5081 2.684881 CAGTCCAGAAACAAACAGCACT 59.315 45.455 0.00 0.00 0.00 4.40
4634 5105 3.133003 GCTCCTCTTAACATCCTGCACTA 59.867 47.826 0.00 0.00 0.00 2.74
4638 5109 5.069648 TCCTCTTAACATCCTGCACTATGAG 59.930 44.000 9.88 0.00 0.00 2.90
4674 5145 3.171277 GTGTTGCCGCATTCTAAACATC 58.829 45.455 0.00 0.00 33.67 3.06
4812 5283 2.876079 GCTGAAGAAAGTACCACCCCAG 60.876 54.545 0.00 0.00 0.00 4.45
4916 5387 1.268283 CCCAGAGGAAGTCACTCCCC 61.268 65.000 0.00 0.00 35.95 4.81
4919 5390 1.277557 CAGAGGAAGTCACTCCCCAAG 59.722 57.143 0.00 0.00 35.95 3.61
4983 5499 0.037605 AAGCACGGAGGACCTAAACG 60.038 55.000 10.24 10.24 0.00 3.60
5037 5553 1.916697 GCAGCTTCAGGAAACCGAGC 61.917 60.000 0.00 0.00 0.00 5.03
5084 5600 0.819582 TCCGAGCTAAAGTTACCCCG 59.180 55.000 0.00 0.00 0.00 5.73
5161 5677 1.737236 TCCTTCGATTTTGTGATGGCG 59.263 47.619 0.00 0.00 31.36 5.69
5219 5735 7.221067 GTGCCATATTTCGATAGTGTATCTAGC 59.779 40.741 0.00 0.00 33.01 3.42
5300 5832 0.393402 TCGTAAGCGAGGCTCCAGTA 60.393 55.000 9.32 0.00 42.81 2.74
5522 6056 2.955660 TGAATGGACAAGAAAAAGGCGT 59.044 40.909 0.00 0.00 0.00 5.68
5701 6256 4.398044 GTGAGAAAGGTTGTCCTGTTGAAA 59.602 41.667 0.00 0.00 44.35 2.69
5702 6257 5.013547 TGAGAAAGGTTGTCCTGTTGAAAA 58.986 37.500 0.00 0.00 44.35 2.29
5727 6282 1.747924 GCTTGGCTGAAAGATCTTCCC 59.252 52.381 8.78 7.79 34.07 3.97
5764 6319 0.809385 CTCAAACGCTCCCTCTACGA 59.191 55.000 0.00 0.00 0.00 3.43
5767 6322 0.526662 AAACGCTCCCTCTACGACTG 59.473 55.000 0.00 0.00 0.00 3.51
5868 6436 2.815211 CCACCGCGACCTCACATG 60.815 66.667 8.23 0.00 0.00 3.21
5885 6453 5.487433 TCACATGTATTTGTTCTCATCCGT 58.513 37.500 0.00 0.00 0.00 4.69
5889 6457 7.439356 CACATGTATTTGTTCTCATCCGTATCT 59.561 37.037 0.00 0.00 0.00 1.98
5926 6495 6.198639 AGTCACTTCATTCCACTATACTCCT 58.801 40.000 0.00 0.00 0.00 3.69
5938 6507 1.987080 ATACTCCTCCCCCAAGCTTT 58.013 50.000 0.00 0.00 0.00 3.51
5991 6560 1.672881 CTGGCATCGGATCCAACTTTC 59.327 52.381 13.41 0.00 30.98 2.62
5998 6567 2.233922 TCGGATCCAACTTTCAGACCTC 59.766 50.000 13.41 0.00 0.00 3.85
5999 6568 2.028112 CGGATCCAACTTTCAGACCTCA 60.028 50.000 13.41 0.00 0.00 3.86
6012 6581 3.077359 CAGACCTCATTTTCTGTGGACC 58.923 50.000 0.69 0.00 40.34 4.46
6014 6583 1.697432 ACCTCATTTTCTGTGGACCGA 59.303 47.619 0.69 0.00 40.34 4.69
6016 6585 2.350522 CTCATTTTCTGTGGACCGAGG 58.649 52.381 0.00 0.00 0.00 4.63
6070 6639 2.592032 TTCGCATGGCTCTCCACCA 61.592 57.895 0.00 0.00 46.92 4.17
6074 6643 1.985614 CATGGCTCTCCACCACTCA 59.014 57.895 0.00 0.00 46.92 3.41
6075 6644 0.545171 CATGGCTCTCCACCACTCAT 59.455 55.000 0.00 0.00 46.92 2.90
6095 6664 2.423898 GGAGGAGTTCGCCCGATCA 61.424 63.158 0.00 0.00 0.00 2.92
6125 6694 3.181454 ACTCAATACGGTGGGAATCCATC 60.181 47.826 0.09 0.00 46.09 3.51
6131 6700 1.144057 GTGGGAATCCATCGCGTCT 59.856 57.895 5.77 0.00 46.09 4.18
6214 6783 4.619227 CGTCTGGCACCCCAACGT 62.619 66.667 0.00 0.00 41.58 3.99
6280 6849 1.404843 GGCTCCGAGTCAGAGGTAAT 58.595 55.000 5.53 0.00 0.00 1.89
6282 6851 2.303175 GCTCCGAGTCAGAGGTAATCT 58.697 52.381 5.53 0.00 39.56 2.40
6331 6900 2.597818 TTATGGTGCGGGGTGCTCA 61.598 57.895 0.00 0.00 46.63 4.26
6352 6921 2.043349 TGCTAGGCAGAGGGCGTA 60.043 61.111 0.00 0.00 46.16 4.42
6359 6928 3.905678 CAGAGGGCGTAGGAGGCG 61.906 72.222 0.00 0.00 37.59 5.52
6437 7006 2.815684 TACGGATGACCAGCACCCCT 62.816 60.000 0.00 0.00 35.59 4.79
6438 7007 2.063979 CGGATGACCAGCACCCCTA 61.064 63.158 0.00 0.00 35.59 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.736721 GCATGCAGTCTTCGACTTTGTA 59.263 45.455 14.21 0.00 41.37 2.41
55 56 7.458397 TCAAACTCTTGTTACCAATAGACCAT 58.542 34.615 0.00 0.00 34.96 3.55
73 74 6.920210 GCATTGAATAAGCCCTTATCAAACTC 59.080 38.462 1.33 0.00 34.90 3.01
75 76 5.687285 CGCATTGAATAAGCCCTTATCAAAC 59.313 40.000 1.33 4.81 34.90 2.93
78 79 3.820467 CCGCATTGAATAAGCCCTTATCA 59.180 43.478 1.33 0.32 34.90 2.15
90 91 3.257873 TGTTTTGATGGACCGCATTGAAT 59.742 39.130 0.00 0.00 0.00 2.57
96 97 1.175983 GGGTGTTTTGATGGACCGCA 61.176 55.000 0.00 0.00 0.00 5.69
131 132 0.958822 AAAAAGTGACCGGACCATGC 59.041 50.000 9.46 0.00 0.00 4.06
133 134 0.958822 GCAAAAAGTGACCGGACCAT 59.041 50.000 9.46 0.00 0.00 3.55
156 157 4.387559 CGAAGGTTTGATACACGACATTGA 59.612 41.667 0.00 0.00 0.00 2.57
160 161 3.054166 CACGAAGGTTTGATACACGACA 58.946 45.455 0.00 0.00 0.00 4.35
161 162 2.410730 CCACGAAGGTTTGATACACGAC 59.589 50.000 0.00 0.00 0.00 4.34
177 178 1.374125 CATGCGAACTGGTCCACGA 60.374 57.895 4.64 0.00 0.00 4.35
191 192 1.795768 TTGTGAGAAGTCGGACATGC 58.204 50.000 11.27 0.00 0.00 4.06
282 283 4.046487 CTTGAAAAGGCACATGGGTTGTG 61.046 47.826 0.00 1.43 46.51 3.33
283 284 1.786937 TGAAAAGGCACATGGGTTGT 58.213 45.000 0.00 0.00 39.91 3.32
284 285 2.758009 CTTGAAAAGGCACATGGGTTG 58.242 47.619 0.00 0.00 41.27 3.77
398 399 4.293671 TTTGGTTGCCCCTCCCCG 62.294 66.667 0.00 0.00 0.00 5.73
399 400 2.603473 GTTTGGTTGCCCCTCCCC 60.603 66.667 0.00 0.00 0.00 4.81
400 401 2.603473 GGTTTGGTTGCCCCTCCC 60.603 66.667 0.00 0.00 0.00 4.30
401 402 0.113580 TAAGGTTTGGTTGCCCCTCC 59.886 55.000 0.00 0.00 0.00 4.30
402 403 1.254026 GTAAGGTTTGGTTGCCCCTC 58.746 55.000 0.00 0.00 0.00 4.30
403 404 0.558712 TGTAAGGTTTGGTTGCCCCT 59.441 50.000 0.00 0.00 0.00 4.79
404 405 1.415200 TTGTAAGGTTTGGTTGCCCC 58.585 50.000 0.00 0.00 0.00 5.80
405 406 2.432874 ACTTTGTAAGGTTTGGTTGCCC 59.567 45.455 0.00 0.00 0.00 5.36
406 407 3.812156 ACTTTGTAAGGTTTGGTTGCC 57.188 42.857 0.00 0.00 0.00 4.52
407 408 6.981559 TGAATAACTTTGTAAGGTTTGGTTGC 59.018 34.615 0.00 0.00 0.00 4.17
408 409 7.436970 GGTGAATAACTTTGTAAGGTTTGGTTG 59.563 37.037 0.00 0.00 0.00 3.77
409 410 7.343574 AGGTGAATAACTTTGTAAGGTTTGGTT 59.656 33.333 0.00 0.00 0.00 3.67
410 411 6.837048 AGGTGAATAACTTTGTAAGGTTTGGT 59.163 34.615 0.00 0.00 0.00 3.67
411 412 7.284919 AGGTGAATAACTTTGTAAGGTTTGG 57.715 36.000 0.00 0.00 0.00 3.28
412 413 8.842280 TGTAGGTGAATAACTTTGTAAGGTTTG 58.158 33.333 0.00 0.00 0.00 2.93
413 414 8.843262 GTGTAGGTGAATAACTTTGTAAGGTTT 58.157 33.333 0.00 0.00 0.00 3.27
414 415 7.446319 GGTGTAGGTGAATAACTTTGTAAGGTT 59.554 37.037 0.00 0.00 0.00 3.50
415 416 6.938596 GGTGTAGGTGAATAACTTTGTAAGGT 59.061 38.462 0.00 0.00 0.00 3.50
416 417 6.938030 TGGTGTAGGTGAATAACTTTGTAAGG 59.062 38.462 0.00 0.00 0.00 2.69
417 418 7.972832 TGGTGTAGGTGAATAACTTTGTAAG 57.027 36.000 0.00 0.00 0.00 2.34
418 419 7.994334 AGTTGGTGTAGGTGAATAACTTTGTAA 59.006 33.333 0.00 0.00 0.00 2.41
419 420 7.511268 AGTTGGTGTAGGTGAATAACTTTGTA 58.489 34.615 0.00 0.00 0.00 2.41
428 663 6.435292 AGTTAGAAGTTGGTGTAGGTGAAT 57.565 37.500 0.00 0.00 0.00 2.57
434 669 6.195983 CGCGTATAAGTTAGAAGTTGGTGTAG 59.804 42.308 0.00 0.00 0.00 2.74
439 674 5.097529 TGTCGCGTATAAGTTAGAAGTTGG 58.902 41.667 5.77 0.00 0.00 3.77
456 691 4.263800 GTTGTTCTGCTAATATTGTCGCG 58.736 43.478 0.00 0.00 0.00 5.87
476 711 5.828299 TTTCAGAGTTGTTTGGATTCGTT 57.172 34.783 0.00 0.00 0.00 3.85
503 738 7.922811 AGATCAAGGAGTTGCTTAAAACTTTTG 59.077 33.333 0.00 9.63 40.48 2.44
531 766 7.569408 CGGTAGTGCATATGCTAAACAATACAG 60.569 40.741 27.13 16.12 42.66 2.74
605 840 1.059913 AGGCTTGCTCTACAGGTTGT 58.940 50.000 0.00 0.00 0.00 3.32
648 884 6.773976 TTATTTCAGAACCATGTTGATCCC 57.226 37.500 0.00 0.00 0.00 3.85
660 896 6.362283 CCGGTGTTTGTCATTTATTTCAGAAC 59.638 38.462 0.00 0.00 0.00 3.01
689 925 3.030291 TGTGATCACAACAGGGCTTTTT 58.970 40.909 26.02 0.00 38.56 1.94
724 960 5.047448 CCAAGTTCAGAGAGAAGAGTGATGA 60.047 44.000 0.00 0.00 36.78 2.92
727 963 4.279671 GTCCAAGTTCAGAGAGAAGAGTGA 59.720 45.833 0.00 0.00 36.78 3.41
740 976 1.282653 TGGGGTGGTGTCCAAGTTCA 61.283 55.000 0.00 0.00 34.18 3.18
783 1019 9.538508 GATCATCCAAAAGAATTAAATTCCAGG 57.461 33.333 0.00 0.00 40.13 4.45
796 1032 3.107601 AGGGAGTCGATCATCCAAAAGA 58.892 45.455 14.08 0.00 37.33 2.52
797 1033 3.550437 AGGGAGTCGATCATCCAAAAG 57.450 47.619 14.08 0.00 37.33 2.27
800 1036 3.384789 CAGTAAGGGAGTCGATCATCCAA 59.615 47.826 14.08 0.00 37.33 3.53
808 1044 2.960384 TGAACAACAGTAAGGGAGTCGA 59.040 45.455 0.00 0.00 0.00 4.20
814 1050 2.742053 CGGACATGAACAACAGTAAGGG 59.258 50.000 0.00 0.00 0.00 3.95
822 1058 2.218603 ACCTTCACGGACATGAACAAC 58.781 47.619 0.00 0.00 34.84 3.32
1214 1452 3.131223 GTGCAGATCTAGCTGAGTAACCA 59.869 47.826 15.20 0.00 38.14 3.67
1268 1506 2.306384 GGGAAAGGGGGATCCACGT 61.306 63.158 15.23 9.17 37.46 4.49
1364 1602 2.608546 CCTGCAAACAAAACATGTGGTG 59.391 45.455 0.00 3.02 42.99 4.17
1716 1954 4.785453 GGCCAAGGGTCGCCTCTG 62.785 72.222 0.00 0.00 42.21 3.35
1725 1963 1.228063 CATCCATCTCGGCCAAGGG 60.228 63.158 2.24 0.00 33.14 3.95
1832 2070 1.093496 CCTGCGCATCATGCTCTTCA 61.093 55.000 12.24 0.00 42.25 3.02
1925 2163 1.689575 CCGATCTTCCTCCCTTCTGGA 60.690 57.143 0.00 0.00 42.41 3.86
2042 2280 4.098914 ACCTTAGAACCATGACTTGCAA 57.901 40.909 0.00 0.00 0.00 4.08
2056 2294 4.389374 CTCCTTGTCTTTGCAACCTTAGA 58.611 43.478 0.00 0.00 0.00 2.10
2140 2378 1.739035 CGATACTCGTGCAATGGGTGT 60.739 52.381 3.05 0.00 36.99 4.16
2151 2389 0.741326 AGTCTGCATGCGATACTCGT 59.259 50.000 14.09 0.00 42.81 4.18
2385 2623 7.641411 CAGAAACAGGAAAGAAATATGCATACG 59.359 37.037 8.99 0.00 0.00 3.06
2428 2666 5.690865 TCAAAACAGGAAGTAAGACCACAT 58.309 37.500 0.00 0.00 0.00 3.21
2551 2789 8.470040 TTTAACTAATCACTAACTACCAAGCG 57.530 34.615 0.00 0.00 0.00 4.68
2570 2808 9.990868 ACATGGTAGAATTCCCTATTTTTAACT 57.009 29.630 0.65 0.00 0.00 2.24
2773 3011 2.023673 CTTGTTGAGGTTTGTGGCAGA 58.976 47.619 0.00 0.00 0.00 4.26
2934 3172 2.808543 CCGATATTGAGCAGGGCTTTAC 59.191 50.000 0.00 0.00 39.88 2.01
2980 3218 7.588512 CCCTAAGTTGAACTTGAAAATGAGAG 58.411 38.462 20.06 6.32 39.11 3.20
2988 3226 2.105134 TCGGCCCTAAGTTGAACTTGAA 59.895 45.455 20.06 0.58 39.11 2.69
3040 3391 6.490040 TGTAAGAGAAATTCCCAAAGACCTTG 59.510 38.462 0.00 0.00 34.52 3.61
3069 3420 3.435275 GGAAAAGGAAGAATGGAGCCTT 58.565 45.455 0.00 0.00 42.27 4.35
3071 3422 2.103373 GGGAAAAGGAAGAATGGAGCC 58.897 52.381 0.00 0.00 0.00 4.70
3112 3463 5.386958 AAGTGACTCTGCGAGTATACAAA 57.613 39.130 5.50 0.00 43.53 2.83
3116 3467 4.822350 AGCATAAGTGACTCTGCGAGTATA 59.178 41.667 12.53 2.31 43.53 1.47
3123 3474 7.439356 TGAATATAACAGCATAAGTGACTCTGC 59.561 37.037 10.96 10.96 34.85 4.26
3337 3688 9.777008 AATAAAATCAGGGAAACAGGGTATTAA 57.223 29.630 0.00 0.00 0.00 1.40
3347 3698 9.554395 TTTTTCTCCAAATAAAATCAGGGAAAC 57.446 29.630 0.00 0.00 0.00 2.78
3377 3728 9.709495 AAACAAAATAGCTAAATCAAATCTGCA 57.291 25.926 0.00 0.00 0.00 4.41
3425 3776 3.443976 GTGAATCTTCTCCTCGAGCTTC 58.556 50.000 6.99 1.81 0.00 3.86
3431 3782 1.923204 CTTGCGTGAATCTTCTCCTCG 59.077 52.381 0.00 0.00 0.00 4.63
3519 3870 4.701651 AGATGCAAGATTCGAAATGTTGGA 59.298 37.500 0.00 7.99 0.00 3.53
3520 3871 4.990257 AGATGCAAGATTCGAAATGTTGG 58.010 39.130 0.00 0.00 0.00 3.77
3521 3872 5.633927 TGAGATGCAAGATTCGAAATGTTG 58.366 37.500 0.00 7.49 0.00 3.33
3522 3873 5.885230 TGAGATGCAAGATTCGAAATGTT 57.115 34.783 0.00 0.00 0.00 2.71
3523 3874 7.228108 ACATATGAGATGCAAGATTCGAAATGT 59.772 33.333 10.38 0.00 0.00 2.71
3524 3875 7.582352 ACATATGAGATGCAAGATTCGAAATG 58.418 34.615 10.38 3.18 0.00 2.32
3527 3878 7.928167 AGTAACATATGAGATGCAAGATTCGAA 59.072 33.333 10.38 0.00 0.00 3.71
3528 3879 7.436933 AGTAACATATGAGATGCAAGATTCGA 58.563 34.615 10.38 0.00 0.00 3.71
3529 3880 7.649370 AGTAACATATGAGATGCAAGATTCG 57.351 36.000 10.38 0.00 0.00 3.34
3530 3881 7.802251 GCAAGTAACATATGAGATGCAAGATTC 59.198 37.037 10.38 0.00 33.00 2.52
3531 3882 7.501559 AGCAAGTAACATATGAGATGCAAGATT 59.498 33.333 10.38 0.00 35.11 2.40
3532 3883 6.996879 AGCAAGTAACATATGAGATGCAAGAT 59.003 34.615 10.38 0.00 35.11 2.40
3640 3991 1.078143 GGAGAAGCTTGGCATCGGT 60.078 57.895 2.10 0.00 31.18 4.69
3667 4018 7.014326 AGGATTACCTTTTTCAGTTCAACCTTC 59.986 37.037 0.00 0.00 45.36 3.46
4103 4553 8.406297 AGTCCTGTTTTTAAGTGATGAAAGTTC 58.594 33.333 0.00 0.00 0.00 3.01
4105 4555 7.881775 AGTCCTGTTTTTAAGTGATGAAAGT 57.118 32.000 0.00 0.00 0.00 2.66
4106 4556 8.405531 TGAAGTCCTGTTTTTAAGTGATGAAAG 58.594 33.333 0.00 0.00 0.00 2.62
4107 4557 8.287439 TGAAGTCCTGTTTTTAAGTGATGAAA 57.713 30.769 0.00 0.00 0.00 2.69
4147 4605 9.547753 TTTTCAGTATATCTTCTGAACATAGCC 57.452 33.333 13.69 0.00 46.03 3.93
4280 4738 1.123246 AAAGGCCCTGCAACAGCATT 61.123 50.000 0.00 1.07 37.69 3.56
4303 4761 8.579850 ACTGCCAATACAGATTTTTCTATGAA 57.420 30.769 0.00 0.00 40.25 2.57
4341 4812 1.302832 CTCGAGGCCCTGCAGTTTT 60.303 57.895 13.81 0.00 0.00 2.43
4342 4813 2.217038 TCTCGAGGCCCTGCAGTTT 61.217 57.895 13.56 0.00 0.00 2.66
4343 4814 2.604686 TCTCGAGGCCCTGCAGTT 60.605 61.111 13.56 0.00 0.00 3.16
4344 4815 3.386237 GTCTCGAGGCCCTGCAGT 61.386 66.667 13.56 0.00 0.00 4.40
4345 4816 2.849120 CTTGTCTCGAGGCCCTGCAG 62.849 65.000 15.72 6.78 0.00 4.41
4346 4817 2.922503 TTGTCTCGAGGCCCTGCA 60.923 61.111 15.72 0.00 0.00 4.41
4347 4818 1.965754 ATCTTGTCTCGAGGCCCTGC 61.966 60.000 15.72 0.00 0.00 4.85
4348 4819 0.103937 GATCTTGTCTCGAGGCCCTG 59.896 60.000 15.72 4.62 0.00 4.45
4349 4820 0.324738 TGATCTTGTCTCGAGGCCCT 60.325 55.000 15.72 0.00 0.00 5.19
4350 4821 0.537188 TTGATCTTGTCTCGAGGCCC 59.463 55.000 15.72 2.62 0.00 5.80
4351 4822 2.611225 ATTGATCTTGTCTCGAGGCC 57.389 50.000 15.72 5.30 0.00 5.19
4352 4823 6.451393 ACTAATATTGATCTTGTCTCGAGGC 58.549 40.000 10.89 10.89 0.00 4.70
4353 4824 8.788806 AGTACTAATATTGATCTTGTCTCGAGG 58.211 37.037 13.56 0.00 0.00 4.63
4354 4825 9.820229 GAGTACTAATATTGATCTTGTCTCGAG 57.180 37.037 5.93 5.93 0.00 4.04
4355 4826 8.496751 CGAGTACTAATATTGATCTTGTCTCGA 58.503 37.037 0.00 0.00 40.14 4.04
4356 4827 7.746916 CCGAGTACTAATATTGATCTTGTCTCG 59.253 40.741 0.00 0.00 38.38 4.04
4411 4882 9.774742 GGTGAAAGATTATTTTCTGTCATACAC 57.225 33.333 0.00 0.00 41.03 2.90
4416 4887 7.014134 TGCAAGGTGAAAGATTATTTTCTGTCA 59.986 33.333 0.00 0.00 37.59 3.58
4434 4905 2.983229 AGACTAGAATGCTGCAAGGTG 58.017 47.619 6.36 0.00 0.00 4.00
4462 4933 6.033707 TCAACTCTACAATTGGTAGGTTGCC 61.034 44.000 22.97 0.00 46.75 4.52
4543 5014 6.765989 TGGTAGCATACAATTGGTTCATAGTC 59.234 38.462 10.83 0.00 45.43 2.59
4561 5032 2.512692 AATTCAGCACCATGGTAGCA 57.487 45.000 29.08 16.42 0.00 3.49
4580 5051 5.560722 TTGTTTCTGGACTGGTTCAGATA 57.439 39.130 11.93 5.48 39.42 1.98
4610 5081 2.305635 TGCAGGATGTTAAGAGGAGCAA 59.694 45.455 0.00 0.00 39.31 3.91
4634 5105 5.390885 CAACACGTGTTTAGCTAATGCTCAT 60.391 40.000 30.49 1.56 41.87 2.90
4638 5109 2.908626 GCAACACGTGTTTAGCTAATGC 59.091 45.455 30.49 23.83 35.83 3.56
4674 5145 8.358148 AGGTAATAAGTACTGTGATATTGTCCG 58.642 37.037 0.00 0.00 32.80 4.79
4787 5258 2.303311 GGTGGTACTTTCTTCAGCCTCT 59.697 50.000 0.00 0.00 0.00 3.69
4812 5283 1.134670 GCTCATACGGATAGGATGGCC 60.135 57.143 0.00 0.00 41.61 5.36
4849 5320 4.647424 ACTTTCTTCGCACCATTTTGAA 57.353 36.364 0.00 0.00 0.00 2.69
4983 5499 4.563168 CCCTGACTCCTGATGATTATCTGC 60.563 50.000 0.00 0.00 34.31 4.26
5084 5600 0.728466 CGTCGAGTTCTTGGTCGTCC 60.728 60.000 0.00 0.00 37.46 4.79
5161 5677 2.753043 CCAGAGGCATGCACACCC 60.753 66.667 21.36 0.72 0.00 4.61
5219 5735 0.872388 GGTTTACAGAACACAGGCCG 59.128 55.000 0.00 0.00 0.00 6.13
5399 5933 1.080366 CCATTGCAATGCAGCACGT 60.080 52.632 30.15 0.00 45.61 4.49
5522 6056 4.821260 TGCACTTGAGCTGAATGAAGTTAA 59.179 37.500 0.00 0.00 34.99 2.01
5629 6184 1.077212 CTGAGTGCATCCCTTGGGG 60.077 63.158 5.78 0.00 46.11 4.96
5649 6204 2.370445 CGGCTTCCAGGACCTCCAT 61.370 63.158 0.00 0.00 38.89 3.41
5701 6256 2.592102 TCTTTCAGCCAAGCTCCATT 57.408 45.000 0.00 0.00 36.40 3.16
5702 6257 2.241685 AGATCTTTCAGCCAAGCTCCAT 59.758 45.455 0.00 0.00 36.40 3.41
5743 6298 0.175989 GTAGAGGGAGCGTTTGAGGG 59.824 60.000 0.00 0.00 0.00 4.30
5752 6307 1.730451 GAGCCAGTCGTAGAGGGAGC 61.730 65.000 0.00 0.00 36.95 4.70
5764 6319 0.252421 TGGACATGAGGAGAGCCAGT 60.252 55.000 0.00 0.00 36.29 4.00
5767 6322 1.145819 GCTGGACATGAGGAGAGCC 59.854 63.158 0.00 0.00 0.00 4.70
5828 6396 2.026729 TCATTGTGGGCCGAATCTAACA 60.027 45.455 0.00 0.00 0.00 2.41
5868 6436 6.360148 GTCGAGATACGGATGAGAACAAATAC 59.640 42.308 0.00 0.00 42.82 1.89
5885 6453 5.014858 AGTGACTAGGTTTTGGTCGAGATA 58.985 41.667 0.00 0.00 33.21 1.98
5889 6457 3.385433 TGAAGTGACTAGGTTTTGGTCGA 59.615 43.478 0.00 0.00 33.21 4.20
5926 6495 0.825840 CCGAAACAAAGCTTGGGGGA 60.826 55.000 5.66 0.00 34.12 4.81
5938 6507 2.098233 GCCGAAGATCGCCGAAACA 61.098 57.895 10.61 0.00 38.82 2.83
5991 6560 3.077359 GGTCCACAGAAAATGAGGTCTG 58.923 50.000 0.00 0.00 45.59 3.51
5998 6567 0.804989 GCCTCGGTCCACAGAAAATG 59.195 55.000 0.00 0.00 0.00 2.32
5999 6568 0.322546 GGCCTCGGTCCACAGAAAAT 60.323 55.000 0.00 0.00 0.00 1.82
6067 6636 1.280457 GAACTCCTCCCATGAGTGGT 58.720 55.000 0.00 0.00 44.48 4.16
6070 6639 1.617947 GGCGAACTCCTCCCATGAGT 61.618 60.000 0.00 0.00 44.75 3.41
6074 6643 3.470888 CGGGCGAACTCCTCCCAT 61.471 66.667 0.00 0.00 40.05 4.00
6075 6644 3.976490 ATCGGGCGAACTCCTCCCA 62.976 63.158 0.00 0.00 40.05 4.37
6095 6664 0.963962 ACCGTATTGAGTGTGACCGT 59.036 50.000 0.00 0.00 0.00 4.83
6107 6676 2.543777 CGATGGATTCCCACCGTATT 57.456 50.000 0.00 0.00 44.53 1.89
6125 6694 2.502510 GCCATTTGCACAGACGCG 60.503 61.111 3.53 3.53 40.77 6.01
6131 6700 1.534336 ATCCAAGCGCCATTTGCACA 61.534 50.000 2.29 0.00 41.33 4.57
6214 6783 2.030862 GTTACGTCACCGCCCCAA 59.969 61.111 0.00 0.00 37.70 4.12
6331 6900 2.664081 GCCCTCTGCCTAGCACAGT 61.664 63.158 9.93 0.00 36.50 3.55
6352 6921 0.983378 AAGGGCTACAATCGCCTCCT 60.983 55.000 0.71 0.00 46.73 3.69
6437 7006 2.740826 GACTTGGTTGCGGCGCTA 60.741 61.111 33.26 23.86 0.00 4.26
6449 7019 1.954146 CCGACACCACCACGACTTG 60.954 63.158 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.