Multiple sequence alignment - TraesCS6B01G209900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G209900 chr6B 100.000 4062 0 0 1 4062 276738968 276743029 0.000000e+00 7502.0
1 TraesCS6B01G209900 chr6A 94.549 1761 58 11 1885 3615 190598717 190596965 0.000000e+00 2686.0
2 TraesCS6B01G209900 chr6A 91.147 1909 97 41 1 1887 190600678 190598820 0.000000e+00 2523.0
3 TraesCS6B01G209900 chr6A 89.714 175 17 1 3888 4062 260483698 260483525 5.280000e-54 222.0
4 TraesCS6B01G209900 chr6D 95.443 1580 54 8 2188 3753 152265401 152266976 0.000000e+00 2503.0
5 TraesCS6B01G209900 chr6D 93.042 1394 61 19 248 1630 152263058 152264426 0.000000e+00 2004.0
6 TraesCS6B01G209900 chr6D 96.735 490 13 2 1669 2156 152264927 152265415 0.000000e+00 813.0
7 TraesCS6B01G209900 chr6D 90.698 258 17 5 1 254 152262773 152263027 1.810000e-88 337.0
8 TraesCS6B01G209900 chr4A 95.888 681 28 0 2218 2898 642773860 642773180 0.000000e+00 1103.0
9 TraesCS6B01G209900 chr4A 96.491 513 15 3 1644 2156 642774397 642773888 0.000000e+00 845.0
10 TraesCS6B01G209900 chr3B 96.000 600 24 0 2215 2814 14726332 14726931 0.000000e+00 976.0
11 TraesCS6B01G209900 chr3B 96.296 513 17 2 1644 2156 14725797 14726307 0.000000e+00 841.0
12 TraesCS6B01G209900 chr2B 89.583 192 17 3 3872 4061 549946783 549946973 1.460000e-59 241.0
13 TraesCS6B01G209900 chr2B 89.189 185 17 3 3877 4060 657050760 657050942 1.140000e-55 228.0
14 TraesCS6B01G209900 chr2B 88.235 187 16 5 3877 4061 584125339 584125521 6.840000e-53 219.0
15 TraesCS6B01G209900 chr7D 88.889 189 19 2 3873 4061 4703016 4702830 8.780000e-57 231.0
16 TraesCS6B01G209900 chr7D 89.130 184 19 1 3878 4061 104684830 104685012 1.140000e-55 228.0
17 TraesCS6B01G209900 chr2D 89.189 185 19 1 3877 4061 61777896 61778079 3.160000e-56 230.0
18 TraesCS6B01G209900 chr2D 87.234 188 18 6 3877 4061 152099664 152099848 4.110000e-50 209.0
19 TraesCS6B01G209900 chr2D 82.609 69 7 4 1997 2060 388340745 388340677 5.670000e-04 56.5
20 TraesCS6B01G209900 chr2D 82.609 69 7 4 1997 2060 388385627 388385559 5.670000e-04 56.5
21 TraesCS6B01G209900 chr1A 86.316 190 24 2 3872 4061 533756207 533756394 5.320000e-49 206.0
22 TraesCS6B01G209900 chr1A 93.651 63 4 0 1085 1147 120012480 120012418 1.200000e-15 95.3
23 TraesCS6B01G209900 chr1A 84.058 69 6 4 1997 2060 202611723 202611655 1.220000e-05 62.1
24 TraesCS6B01G209900 chr3D 96.825 63 2 0 1085 1147 90369683 90369745 5.550000e-19 106.0
25 TraesCS6B01G209900 chr3A 96.825 63 2 0 1085 1147 106657718 106657780 5.550000e-19 106.0
26 TraesCS6B01G209900 chr1D 85.870 92 11 2 1058 1147 112771715 112771624 3.340000e-16 97.1
27 TraesCS6B01G209900 chr1D 93.182 44 3 0 283 326 357456104 357456147 9.420000e-07 65.8
28 TraesCS6B01G209900 chr1B 93.651 63 4 0 1085 1147 172387999 172387937 1.200000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G209900 chr6B 276738968 276743029 4061 False 7502.00 7502 100.0000 1 4062 1 chr6B.!!$F1 4061
1 TraesCS6B01G209900 chr6A 190596965 190600678 3713 True 2604.50 2686 92.8480 1 3615 2 chr6A.!!$R2 3614
2 TraesCS6B01G209900 chr6D 152262773 152266976 4203 False 1414.25 2503 93.9795 1 3753 4 chr6D.!!$F1 3752
3 TraesCS6B01G209900 chr4A 642773180 642774397 1217 True 974.00 1103 96.1895 1644 2898 2 chr4A.!!$R1 1254
4 TraesCS6B01G209900 chr3B 14725797 14726931 1134 False 908.50 976 96.1480 1644 2814 2 chr3B.!!$F1 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 655 0.323629 CAAGCCCGGTCTGAAACCTA 59.676 55.000 0.0 0.0 46.87 3.08 F
1050 1101 0.387929 TTACCATAGCGGAAGGAGCG 59.612 55.000 0.0 0.0 40.04 5.03 F
1454 1506 1.065709 TGGGTAAATCTTCACTCGCCC 60.066 52.381 0.0 0.0 35.59 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 2213 0.908198 AGCTAAAGGGCTCAGACTGG 59.092 55.000 1.81 0.0 38.24 4.00 R
3043 3677 1.462670 GTTCAGCTTTGCTCTTCCTCG 59.537 52.381 0.00 0.0 36.40 4.63 R
3270 3904 0.835941 AGGCCAACCAAAAATGCACA 59.164 45.000 5.01 0.0 39.06 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 3.619233 AACTACGTGCCATTTGTTGAC 57.381 42.857 0.00 0.00 0.00 3.18
75 78 1.529438 ACTACGTGCCATTTGTTGACG 59.471 47.619 0.00 0.00 33.19 4.35
89 93 2.287644 TGTTGACGAGTGATTTGCAGTG 59.712 45.455 0.00 0.00 0.00 3.66
155 160 6.093495 TCAGAAAACATCCATTCCGAACATAC 59.907 38.462 0.00 0.00 0.00 2.39
254 260 5.366477 ACATGAAAAATTTCCACTGGTCCTT 59.634 36.000 0.00 0.00 36.36 3.36
279 321 3.116174 GAGTTAGGAACTGGATCCCCTT 58.884 50.000 9.90 0.00 43.03 3.95
296 338 2.250924 CCTTCCCAAGGCTTTGAATGT 58.749 47.619 10.61 0.00 42.78 2.71
407 452 3.697045 CCCGGGCTTCATTTTACAACATA 59.303 43.478 8.08 0.00 0.00 2.29
426 471 0.902531 AAAAGAGGATTCGAGCCGGA 59.097 50.000 5.05 0.00 0.00 5.14
443 488 3.064134 GCCGGACTTGAGCTTCTATTTTC 59.936 47.826 5.05 0.00 0.00 2.29
458 503 6.582677 TCTATTTTCTTGATTTTCGGCCAA 57.417 33.333 2.24 0.00 0.00 4.52
476 521 0.606401 AAGCTTGCACATGCGTAGGT 60.606 50.000 0.00 2.34 45.83 3.08
477 522 1.021390 AGCTTGCACATGCGTAGGTC 61.021 55.000 0.00 0.00 45.83 3.85
514 559 3.073650 AGACAGGATTTCAGGCTTCAAGT 59.926 43.478 0.00 0.00 0.00 3.16
526 571 2.101415 GGCTTCAAGTTGCTTTTCAGGT 59.899 45.455 0.00 0.00 0.00 4.00
530 576 1.946768 CAAGTTGCTTTTCAGGTCGGA 59.053 47.619 0.00 0.00 0.00 4.55
560 606 9.547753 GACATGAGAAAATAGCTATCTTTGGTA 57.452 33.333 6.72 0.45 0.00 3.25
608 654 1.073199 CAAGCCCGGTCTGAAACCT 59.927 57.895 0.00 0.00 46.87 3.50
609 655 0.323629 CAAGCCCGGTCTGAAACCTA 59.676 55.000 0.00 0.00 46.87 3.08
615 661 0.323629 CGGTCTGAAACCTAGCCCAA 59.676 55.000 0.00 0.00 46.87 4.12
619 665 0.404040 CTGAAACCTAGCCCAACCCA 59.596 55.000 0.00 0.00 0.00 4.51
625 672 1.274184 ACCTAGCCCAACCCAGACATA 60.274 52.381 0.00 0.00 0.00 2.29
631 678 3.096092 GCCCAACCCAGACATAATGAAA 58.904 45.455 0.00 0.00 0.00 2.69
646 693 6.692681 ACATAATGAAATTTGCGTGTGATAGC 59.307 34.615 0.00 0.00 37.87 2.97
732 779 1.058903 GGAAACGTCAGAATCGCGC 59.941 57.895 0.00 0.00 0.00 6.86
781 828 2.007608 GAACACCGTCTATTTCAGCCC 58.992 52.381 0.00 0.00 0.00 5.19
784 831 2.039879 ACACCGTCTATTTCAGCCCTTT 59.960 45.455 0.00 0.00 0.00 3.11
785 832 2.420022 CACCGTCTATTTCAGCCCTTTG 59.580 50.000 0.00 0.00 0.00 2.77
797 844 2.049435 CCCTTTGGCTTGTTCACCC 58.951 57.895 0.00 0.00 0.00 4.61
805 852 1.202521 GGCTTGTTCACCCAAGGTTTG 60.203 52.381 3.39 0.00 41.70 2.93
806 853 1.806247 GCTTGTTCACCCAAGGTTTGC 60.806 52.381 3.39 0.00 41.70 3.68
807 854 1.756538 CTTGTTCACCCAAGGTTTGCT 59.243 47.619 0.00 0.00 38.51 3.91
808 855 2.738587 TGTTCACCCAAGGTTTGCTA 57.261 45.000 0.00 0.00 31.02 3.49
809 856 2.582052 TGTTCACCCAAGGTTTGCTAG 58.418 47.619 0.00 0.00 31.02 3.42
936 987 1.001158 CCGCCGAAATCTCTCTACTCC 60.001 57.143 0.00 0.00 0.00 3.85
1050 1101 0.387929 TTACCATAGCGGAAGGAGCG 59.612 55.000 0.00 0.00 40.04 5.03
1231 1282 2.897326 GGTTTTAGGGGCACATCTGTTT 59.103 45.455 0.00 0.00 0.00 2.83
1274 1325 2.338500 GTTGTCCTCTTTGCGTAGGAG 58.662 52.381 0.00 0.00 42.55 3.69
1341 1392 3.073209 TGGGTGTCCTGCTAACATTTACA 59.927 43.478 0.00 0.00 0.00 2.41
1354 1405 9.926158 TGCTAACATTTACAATGAAATCAACAT 57.074 25.926 3.47 0.00 0.00 2.71
1454 1506 1.065709 TGGGTAAATCTTCACTCGCCC 60.066 52.381 0.00 0.00 35.59 6.13
1499 1551 4.010349 AGGCCTCTGTTATGTTACTTTGC 58.990 43.478 0.00 0.00 0.00 3.68
1548 1601 6.195798 CGCATATCAATGTTGATGACTTGTTG 59.804 38.462 16.40 5.83 46.68 3.33
1559 1612 5.610398 TGATGACTTGTTGTACTGTGATGT 58.390 37.500 0.00 0.00 0.00 3.06
1574 1627 5.641209 ACTGTGATGTGTATCTTTCTGCTTC 59.359 40.000 0.00 0.00 34.31 3.86
1630 1683 4.022935 TGAGGTTGTTGCAGCTCATTTAAG 60.023 41.667 1.17 0.00 44.51 1.85
1632 1685 3.255642 GGTTGTTGCAGCTCATTTAAGGA 59.744 43.478 1.17 0.00 0.00 3.36
1637 1690 1.752084 GCAGCTCATTTAAGGAGGGGG 60.752 57.143 8.71 0.00 32.96 5.40
1662 1715 5.694006 GGAGTCTACATTCATGTCACATAGC 59.306 44.000 0.00 0.00 41.97 2.97
1698 2213 6.521151 ACAATTGATGTTCTTCCTTCATCC 57.479 37.500 13.59 0.00 40.06 3.51
1732 2247 5.448632 CCCTTTAGCTTTATACCGCACTTTG 60.449 44.000 0.00 0.00 0.00 2.77
1878 2396 6.456181 CGCAAAAGACTAGGCTCAAGAATAAG 60.456 42.308 0.00 0.00 0.00 1.73
1958 2580 6.037610 GGCACTCATGTATTTCTAGGTTCAAG 59.962 42.308 0.00 0.00 0.00 3.02
2296 2930 7.176515 AGTCATCTAGCTCTGGACATGTAATAG 59.823 40.741 0.00 0.00 0.00 1.73
2297 2931 6.435591 TCATCTAGCTCTGGACATGTAATAGG 59.564 42.308 0.00 0.00 0.00 2.57
2300 2934 6.943146 TCTAGCTCTGGACATGTAATAGGTAG 59.057 42.308 19.83 19.83 35.79 3.18
2600 3234 3.485463 TGACCCTTTGTTACTGTCTGG 57.515 47.619 0.00 0.00 0.00 3.86
2757 3391 6.936335 TGAGTCTTGTTTCTCATAATTCTGCA 59.064 34.615 0.00 0.00 36.04 4.41
2758 3392 7.118825 TGAGTCTTGTTTCTCATAATTCTGCAG 59.881 37.037 7.63 7.63 36.04 4.41
2762 3396 6.932356 TGTTTCTCATAATTCTGCAGGATC 57.068 37.500 15.13 0.00 0.00 3.36
2853 3487 4.332819 GTCAAAGATGATACAAGGAACCGG 59.667 45.833 0.00 0.00 38.01 5.28
2889 3523 4.622220 GCCAAGGTTAGTGTTCTTCGGATA 60.622 45.833 0.00 0.00 0.00 2.59
2952 3586 8.218488 ACTGTTTTTCCTTACTCTCATAACCTT 58.782 33.333 0.00 0.00 0.00 3.50
3245 3879 9.559732 CAACTTGTGATAATGGGATTATGAGTA 57.440 33.333 0.00 0.00 35.68 2.59
3270 3904 3.753294 ACACTCTTGATTTGTCCTCGT 57.247 42.857 0.00 0.00 0.00 4.18
3289 3923 0.835941 TGTGCATTTTTGGTTGGCCT 59.164 45.000 3.32 0.00 35.27 5.19
3477 4129 3.072476 CCCAAGTTCACTTCTGGTCCTTA 59.928 47.826 0.00 0.00 33.11 2.69
3615 4269 1.801178 GTAGTTGCCACAGACAAGAGC 59.199 52.381 0.00 0.00 0.00 4.09
3619 4273 0.535780 TGCCACAGACAAGAGCAAGG 60.536 55.000 0.00 0.00 0.00 3.61
3665 4319 7.374272 TCTTTTATTCCATTTCATTCGTTGCA 58.626 30.769 0.00 0.00 0.00 4.08
3680 4334 2.860735 CGTTGCAGAACTAGATAGCCAC 59.139 50.000 0.00 0.00 0.00 5.01
3687 4341 0.106167 ACTAGATAGCCACCGAGCCA 60.106 55.000 0.00 0.00 0.00 4.75
3716 4370 4.010667 AGCTATCCTCTACTCACGGTAG 57.989 50.000 0.00 0.00 46.79 3.18
3729 4383 2.960384 TCACGGTAGAAGTCACAGGAAA 59.040 45.455 0.00 0.00 0.00 3.13
3753 4407 0.320247 CACAGCCTCTTCTTGACGCT 60.320 55.000 0.00 0.00 37.49 5.07
3754 4408 0.037790 ACAGCCTCTTCTTGACGCTC 60.038 55.000 0.00 0.00 35.41 5.03
3755 4409 0.246086 CAGCCTCTTCTTGACGCTCT 59.754 55.000 0.00 0.00 35.41 4.09
3756 4410 0.972883 AGCCTCTTCTTGACGCTCTT 59.027 50.000 0.00 0.00 32.89 2.85
3757 4411 1.074752 GCCTCTTCTTGACGCTCTTG 58.925 55.000 0.00 0.00 0.00 3.02
3758 4412 1.337260 GCCTCTTCTTGACGCTCTTGA 60.337 52.381 0.00 0.00 0.00 3.02
3759 4413 2.333014 CCTCTTCTTGACGCTCTTGAC 58.667 52.381 0.00 0.00 0.00 3.18
3760 4414 1.982223 CTCTTCTTGACGCTCTTGACG 59.018 52.381 0.00 0.00 0.00 4.35
3761 4415 0.436531 CTTCTTGACGCTCTTGACGC 59.563 55.000 0.00 0.00 0.00 5.19
3762 4416 0.944311 TTCTTGACGCTCTTGACGCC 60.944 55.000 0.00 0.00 0.00 5.68
3763 4417 2.720758 CTTGACGCTCTTGACGCCG 61.721 63.158 0.00 0.00 0.00 6.46
3764 4418 3.493830 TTGACGCTCTTGACGCCGT 62.494 57.895 0.00 0.00 36.53 5.68
3765 4419 3.173240 GACGCTCTTGACGCCGTC 61.173 66.667 10.96 10.96 42.39 4.79
3769 4423 3.175240 CTCTTGACGCCGTCGCTG 61.175 66.667 13.18 5.25 39.84 5.18
3770 4424 3.898627 CTCTTGACGCCGTCGCTGT 62.899 63.158 13.18 0.00 39.84 4.40
3771 4425 3.470567 CTTGACGCCGTCGCTGTC 61.471 66.667 13.18 7.82 39.84 3.51
3780 4434 4.400109 GTCGCTGTCGGACGAGCA 62.400 66.667 22.91 12.92 39.30 4.26
3781 4435 4.103103 TCGCTGTCGGACGAGCAG 62.103 66.667 22.91 17.59 34.69 4.24
3782 4436 4.406173 CGCTGTCGGACGAGCAGT 62.406 66.667 22.91 0.00 34.69 4.40
3793 4447 2.751166 ACGAGCAGTCAAAGCTGTAT 57.249 45.000 0.00 0.00 43.58 2.29
3794 4448 2.341257 ACGAGCAGTCAAAGCTGTATG 58.659 47.619 0.00 0.00 43.58 2.39
3795 4449 2.029020 ACGAGCAGTCAAAGCTGTATGA 60.029 45.455 0.00 0.00 43.58 2.15
3796 4450 2.602211 CGAGCAGTCAAAGCTGTATGAG 59.398 50.000 0.00 0.00 43.58 2.90
3797 4451 3.674410 CGAGCAGTCAAAGCTGTATGAGA 60.674 47.826 0.00 0.00 43.58 3.27
3798 4452 3.594134 AGCAGTCAAAGCTGTATGAGAC 58.406 45.455 0.00 0.00 41.61 3.36
3799 4453 2.346847 GCAGTCAAAGCTGTATGAGACG 59.653 50.000 0.00 0.00 38.65 4.18
3800 4454 3.579709 CAGTCAAAGCTGTATGAGACGT 58.420 45.455 0.00 0.00 0.00 4.34
3801 4455 3.366121 CAGTCAAAGCTGTATGAGACGTG 59.634 47.826 0.00 0.00 0.00 4.49
3802 4456 2.668457 GTCAAAGCTGTATGAGACGTGG 59.332 50.000 0.00 0.00 0.00 4.94
3803 4457 1.394917 CAAAGCTGTATGAGACGTGGC 59.605 52.381 0.00 0.00 0.00 5.01
3804 4458 0.898320 AAGCTGTATGAGACGTGGCT 59.102 50.000 0.00 0.00 34.09 4.75
3805 4459 0.174389 AGCTGTATGAGACGTGGCTG 59.826 55.000 0.00 0.00 32.34 4.85
3806 4460 1.424493 GCTGTATGAGACGTGGCTGC 61.424 60.000 0.00 0.00 0.00 5.25
3807 4461 0.807667 CTGTATGAGACGTGGCTGCC 60.808 60.000 12.87 12.87 0.00 4.85
3808 4462 1.257750 TGTATGAGACGTGGCTGCCT 61.258 55.000 21.03 0.00 0.00 4.75
3809 4463 0.108138 GTATGAGACGTGGCTGCCTT 60.108 55.000 21.03 3.81 0.00 4.35
3810 4464 0.108186 TATGAGACGTGGCTGCCTTG 60.108 55.000 21.03 14.28 0.00 3.61
3811 4465 2.031163 GAGACGTGGCTGCCTTGT 59.969 61.111 21.03 17.51 0.00 3.16
3812 4466 2.029844 GAGACGTGGCTGCCTTGTC 61.030 63.158 26.07 26.07 0.00 3.18
3813 4467 2.031163 GACGTGGCTGCCTTGTCT 59.969 61.111 26.09 5.82 0.00 3.41
3814 4468 2.029844 GACGTGGCTGCCTTGTCTC 61.030 63.158 26.09 10.28 0.00 3.36
3815 4469 3.114616 CGTGGCTGCCTTGTCTCG 61.115 66.667 21.03 10.64 0.00 4.04
3816 4470 3.426568 GTGGCTGCCTTGTCTCGC 61.427 66.667 21.03 0.00 0.00 5.03
3817 4471 3.939939 TGGCTGCCTTGTCTCGCA 61.940 61.111 21.03 0.00 0.00 5.10
3818 4472 3.426568 GGCTGCCTTGTCTCGCAC 61.427 66.667 12.43 0.00 0.00 5.34
3819 4473 2.666190 GCTGCCTTGTCTCGCACA 60.666 61.111 0.00 0.00 0.00 4.57
3820 4474 2.253758 GCTGCCTTGTCTCGCACAA 61.254 57.895 0.00 0.57 43.12 3.33
3821 4475 1.580845 GCTGCCTTGTCTCGCACAAT 61.581 55.000 0.83 0.00 44.32 2.71
3822 4476 0.167470 CTGCCTTGTCTCGCACAATG 59.833 55.000 0.83 0.43 44.32 2.82
3823 4477 1.154150 GCCTTGTCTCGCACAATGC 60.154 57.895 10.11 10.11 45.65 3.56
3824 4478 1.503542 CCTTGTCTCGCACAATGCC 59.496 57.895 0.83 0.00 44.32 4.40
3825 4479 0.957395 CCTTGTCTCGCACAATGCCT 60.957 55.000 0.83 0.00 44.32 4.75
3826 4480 1.675714 CCTTGTCTCGCACAATGCCTA 60.676 52.381 0.83 0.00 44.32 3.93
3827 4481 1.394917 CTTGTCTCGCACAATGCCTAC 59.605 52.381 0.83 0.00 44.32 3.18
3828 4482 0.608130 TGTCTCGCACAATGCCTACT 59.392 50.000 0.00 0.00 41.12 2.57
3829 4483 1.002366 GTCTCGCACAATGCCTACTG 58.998 55.000 0.00 0.00 41.12 2.74
3830 4484 0.740868 TCTCGCACAATGCCTACTGC 60.741 55.000 0.00 0.00 41.12 4.40
3831 4485 1.709147 CTCGCACAATGCCTACTGCC 61.709 60.000 0.00 0.00 41.12 4.85
3832 4486 1.746615 CGCACAATGCCTACTGCCT 60.747 57.895 0.00 0.00 41.12 4.75
3833 4487 1.308069 CGCACAATGCCTACTGCCTT 61.308 55.000 0.00 0.00 41.12 4.35
3834 4488 0.890683 GCACAATGCCTACTGCCTTT 59.109 50.000 0.00 0.00 37.42 3.11
3835 4489 1.403249 GCACAATGCCTACTGCCTTTG 60.403 52.381 0.00 0.00 37.42 2.77
3836 4490 0.890683 ACAATGCCTACTGCCTTTGC 59.109 50.000 0.00 0.00 40.16 3.68
3837 4491 1.180029 CAATGCCTACTGCCTTTGCT 58.820 50.000 0.00 0.00 40.16 3.91
3838 4492 1.133790 CAATGCCTACTGCCTTTGCTC 59.866 52.381 0.00 0.00 40.16 4.26
3839 4493 0.394899 ATGCCTACTGCCTTTGCTCC 60.395 55.000 0.00 0.00 40.16 4.70
3840 4494 1.750780 GCCTACTGCCTTTGCTCCC 60.751 63.158 0.00 0.00 38.71 4.30
3841 4495 1.077429 CCTACTGCCTTTGCTCCCC 60.077 63.158 0.00 0.00 38.71 4.81
3842 4496 1.566298 CCTACTGCCTTTGCTCCCCT 61.566 60.000 0.00 0.00 38.71 4.79
3843 4497 0.393537 CTACTGCCTTTGCTCCCCTG 60.394 60.000 0.00 0.00 38.71 4.45
3844 4498 0.840288 TACTGCCTTTGCTCCCCTGA 60.840 55.000 0.00 0.00 38.71 3.86
3845 4499 1.305623 CTGCCTTTGCTCCCCTGAT 59.694 57.895 0.00 0.00 38.71 2.90
3846 4500 1.000521 TGCCTTTGCTCCCCTGATG 60.001 57.895 0.00 0.00 38.71 3.07
3847 4501 2.421399 GCCTTTGCTCCCCTGATGC 61.421 63.158 0.00 0.00 33.53 3.91
3848 4502 1.755783 CCTTTGCTCCCCTGATGCC 60.756 63.158 0.00 0.00 0.00 4.40
3849 4503 1.000521 CTTTGCTCCCCTGATGCCA 60.001 57.895 0.00 0.00 0.00 4.92
3850 4504 0.396695 CTTTGCTCCCCTGATGCCAT 60.397 55.000 0.00 0.00 0.00 4.40
3851 4505 0.396139 TTTGCTCCCCTGATGCCATC 60.396 55.000 0.00 0.00 0.00 3.51
3852 4506 2.281345 GCTCCCCTGATGCCATCG 60.281 66.667 0.00 0.00 0.00 3.84
3853 4507 3.112205 GCTCCCCTGATGCCATCGT 62.112 63.158 0.00 0.00 0.00 3.73
3854 4508 1.528824 CTCCCCTGATGCCATCGTT 59.471 57.895 0.00 0.00 0.00 3.85
3855 4509 0.816825 CTCCCCTGATGCCATCGTTG 60.817 60.000 0.00 0.00 0.00 4.10
3856 4510 1.077501 CCCCTGATGCCATCGTTGT 60.078 57.895 0.00 0.00 0.00 3.32
3857 4511 1.378882 CCCCTGATGCCATCGTTGTG 61.379 60.000 0.00 0.00 0.00 3.33
3858 4512 0.677731 CCCTGATGCCATCGTTGTGT 60.678 55.000 0.00 0.00 0.00 3.72
3859 4513 1.167851 CCTGATGCCATCGTTGTGTT 58.832 50.000 0.00 0.00 0.00 3.32
3860 4514 1.135603 CCTGATGCCATCGTTGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
3861 4515 0.240678 TGATGCCATCGTTGTGTTGC 59.759 50.000 0.00 0.00 0.00 4.17
3862 4516 0.794229 GATGCCATCGTTGTGTTGCG 60.794 55.000 0.00 0.00 0.00 4.85
3863 4517 2.126888 GCCATCGTTGTGTTGCGG 60.127 61.111 0.00 0.00 0.00 5.69
3864 4518 2.126888 CCATCGTTGTGTTGCGGC 60.127 61.111 0.00 0.00 0.00 6.53
3865 4519 2.499520 CATCGTTGTGTTGCGGCG 60.500 61.111 0.51 0.51 0.00 6.46
3866 4520 4.383602 ATCGTTGTGTTGCGGCGC 62.384 61.111 27.44 27.44 0.00 6.53
3878 4532 4.622456 CGGCGCCGCTGTTTGTTT 62.622 61.111 38.48 0.00 0.00 2.83
3879 4533 2.279186 GGCGCCGCTGTTTGTTTT 60.279 55.556 12.58 0.00 0.00 2.43
3880 4534 1.880796 GGCGCCGCTGTTTGTTTTT 60.881 52.632 12.58 0.00 0.00 1.94
3905 4559 9.543783 TTTTAAACAAGGCAAAATATTTACCGT 57.456 25.926 0.01 2.25 0.00 4.83
3906 4560 9.543783 TTTAAACAAGGCAAAATATTTACCGTT 57.456 25.926 0.01 4.80 0.00 4.44
3907 4561 9.543783 TTAAACAAGGCAAAATATTTACCGTTT 57.456 25.926 18.99 18.99 0.00 3.60
3908 4562 8.439993 AAACAAGGCAAAATATTTACCGTTTT 57.560 26.923 0.01 2.13 0.00 2.43
3909 4563 7.646446 ACAAGGCAAAATATTTACCGTTTTC 57.354 32.000 0.01 0.00 0.00 2.29
3910 4564 7.210873 ACAAGGCAAAATATTTACCGTTTTCA 58.789 30.769 0.01 0.00 0.00 2.69
3911 4565 7.875554 ACAAGGCAAAATATTTACCGTTTTCAT 59.124 29.630 0.01 0.00 0.00 2.57
3912 4566 8.716909 CAAGGCAAAATATTTACCGTTTTCATT 58.283 29.630 0.01 0.00 0.00 2.57
3913 4567 8.250538 AGGCAAAATATTTACCGTTTTCATTG 57.749 30.769 0.01 0.00 0.00 2.82
3914 4568 8.091449 AGGCAAAATATTTACCGTTTTCATTGA 58.909 29.630 0.01 0.00 0.00 2.57
3915 4569 8.878769 GGCAAAATATTTACCGTTTTCATTGAT 58.121 29.630 0.01 0.00 0.00 2.57
3926 4580 8.391075 ACCGTTTTCATTGATTAAGAAGAAGA 57.609 30.769 0.00 0.00 0.00 2.87
3927 4581 8.507249 ACCGTTTTCATTGATTAAGAAGAAGAG 58.493 33.333 0.00 0.00 0.00 2.85
3928 4582 8.721478 CCGTTTTCATTGATTAAGAAGAAGAGA 58.279 33.333 0.00 0.00 0.00 3.10
3929 4583 9.752274 CGTTTTCATTGATTAAGAAGAAGAGAG 57.248 33.333 0.00 0.00 0.00 3.20
3933 4587 9.784531 TTCATTGATTAAGAAGAAGAGAGTTGT 57.215 29.630 0.00 0.00 0.00 3.32
3934 4588 9.429359 TCATTGATTAAGAAGAAGAGAGTTGTC 57.571 33.333 0.00 0.00 0.00 3.18
3935 4589 9.434420 CATTGATTAAGAAGAAGAGAGTTGTCT 57.566 33.333 0.00 0.00 34.86 3.41
3936 4590 8.824159 TTGATTAAGAAGAAGAGAGTTGTCTG 57.176 34.615 0.00 0.00 30.97 3.51
3937 4591 8.183104 TGATTAAGAAGAAGAGAGTTGTCTGA 57.817 34.615 0.00 0.00 30.97 3.27
3938 4592 8.811017 TGATTAAGAAGAAGAGAGTTGTCTGAT 58.189 33.333 0.00 0.00 30.97 2.90
3939 4593 9.651913 GATTAAGAAGAAGAGAGTTGTCTGATT 57.348 33.333 0.00 0.00 30.97 2.57
3966 4620 7.815398 TTAAAGAAAAACTGGACGAAAAACC 57.185 32.000 0.00 0.00 0.00 3.27
3967 4621 5.654603 AAGAAAAACTGGACGAAAAACCT 57.345 34.783 0.00 0.00 0.00 3.50
3968 4622 6.762702 AAGAAAAACTGGACGAAAAACCTA 57.237 33.333 0.00 0.00 0.00 3.08
3969 4623 6.762702 AGAAAAACTGGACGAAAAACCTAA 57.237 33.333 0.00 0.00 0.00 2.69
3970 4624 7.160547 AGAAAAACTGGACGAAAAACCTAAA 57.839 32.000 0.00 0.00 0.00 1.85
3971 4625 7.778083 AGAAAAACTGGACGAAAAACCTAAAT 58.222 30.769 0.00 0.00 0.00 1.40
3972 4626 8.255206 AGAAAAACTGGACGAAAAACCTAAATT 58.745 29.630 0.00 0.00 0.00 1.82
3973 4627 9.518906 GAAAAACTGGACGAAAAACCTAAATTA 57.481 29.630 0.00 0.00 0.00 1.40
3974 4628 8.861033 AAAACTGGACGAAAAACCTAAATTAC 57.139 30.769 0.00 0.00 0.00 1.89
3975 4629 7.571080 AACTGGACGAAAAACCTAAATTACA 57.429 32.000 0.00 0.00 0.00 2.41
3976 4630 7.571080 ACTGGACGAAAAACCTAAATTACAA 57.429 32.000 0.00 0.00 0.00 2.41
3977 4631 7.998580 ACTGGACGAAAAACCTAAATTACAAA 58.001 30.769 0.00 0.00 0.00 2.83
3978 4632 7.916977 ACTGGACGAAAAACCTAAATTACAAAC 59.083 33.333 0.00 0.00 0.00 2.93
3979 4633 7.201835 TGGACGAAAAACCTAAATTACAAACC 58.798 34.615 0.00 0.00 0.00 3.27
3980 4634 6.642131 GGACGAAAAACCTAAATTACAAACCC 59.358 38.462 0.00 0.00 0.00 4.11
3981 4635 6.514947 ACGAAAAACCTAAATTACAAACCCC 58.485 36.000 0.00 0.00 0.00 4.95
3982 4636 6.097981 ACGAAAAACCTAAATTACAAACCCCA 59.902 34.615 0.00 0.00 0.00 4.96
3983 4637 6.421501 CGAAAAACCTAAATTACAAACCCCAC 59.578 38.462 0.00 0.00 0.00 4.61
3984 4638 6.809976 AAAACCTAAATTACAAACCCCACA 57.190 33.333 0.00 0.00 0.00 4.17
3985 4639 6.809976 AAACCTAAATTACAAACCCCACAA 57.190 33.333 0.00 0.00 0.00 3.33
3986 4640 6.413783 AACCTAAATTACAAACCCCACAAG 57.586 37.500 0.00 0.00 0.00 3.16
3987 4641 4.836175 ACCTAAATTACAAACCCCACAAGG 59.164 41.667 0.00 0.00 0.00 3.61
3997 4651 3.286751 CCACAAGGGGCACACACG 61.287 66.667 0.00 0.00 0.00 4.49
3998 4652 2.203139 CACAAGGGGCACACACGA 60.203 61.111 0.00 0.00 0.00 4.35
3999 4653 1.821759 CACAAGGGGCACACACGAA 60.822 57.895 0.00 0.00 0.00 3.85
4000 4654 1.822186 ACAAGGGGCACACACGAAC 60.822 57.895 0.00 0.00 0.00 3.95
4001 4655 2.590575 AAGGGGCACACACGAACG 60.591 61.111 0.00 0.00 0.00 3.95
4002 4656 3.096633 AAGGGGCACACACGAACGA 62.097 57.895 0.14 0.00 0.00 3.85
4003 4657 3.343421 GGGGCACACACGAACGAC 61.343 66.667 0.14 0.00 0.00 4.34
4004 4658 3.343421 GGGCACACACGAACGACC 61.343 66.667 0.14 0.00 0.00 4.79
4005 4659 2.279918 GGCACACACGAACGACCT 60.280 61.111 0.14 0.00 0.00 3.85
4006 4660 2.594962 GGCACACACGAACGACCTG 61.595 63.158 0.14 0.00 0.00 4.00
4007 4661 2.594962 GCACACACGAACGACCTGG 61.595 63.158 0.14 0.00 0.00 4.45
4008 4662 2.279918 ACACACGAACGACCTGGC 60.280 61.111 0.14 0.00 0.00 4.85
4009 4663 3.041940 CACACGAACGACCTGGCC 61.042 66.667 0.00 0.00 0.00 5.36
4010 4664 3.542676 ACACGAACGACCTGGCCA 61.543 61.111 4.71 4.71 0.00 5.36
4011 4665 3.041940 CACGAACGACCTGGCCAC 61.042 66.667 0.00 0.00 0.00 5.01
4012 4666 3.542676 ACGAACGACCTGGCCACA 61.543 61.111 0.00 0.00 0.00 4.17
4013 4667 2.280524 CGAACGACCTGGCCACAA 60.281 61.111 0.00 0.00 0.00 3.33
4014 4668 2.317609 CGAACGACCTGGCCACAAG 61.318 63.158 0.00 0.00 0.00 3.16
4015 4669 2.594592 AACGACCTGGCCACAAGC 60.595 61.111 0.00 0.00 42.60 4.01
4016 4670 3.414136 AACGACCTGGCCACAAGCA 62.414 57.895 0.00 0.00 46.50 3.91
4017 4671 2.594303 CGACCTGGCCACAAGCAA 60.594 61.111 0.00 0.00 46.50 3.91
4018 4672 2.620112 CGACCTGGCCACAAGCAAG 61.620 63.158 0.00 0.00 46.50 4.01
4019 4673 1.228245 GACCTGGCCACAAGCAAGA 60.228 57.895 0.00 0.00 46.73 3.02
4020 4674 0.610232 GACCTGGCCACAAGCAAGAT 60.610 55.000 0.00 0.00 46.73 2.40
4021 4675 0.610232 ACCTGGCCACAAGCAAGATC 60.610 55.000 0.00 0.00 46.73 2.75
4022 4676 0.609957 CCTGGCCACAAGCAAGATCA 60.610 55.000 0.00 0.00 46.73 2.92
4023 4677 0.524862 CTGGCCACAAGCAAGATCAC 59.475 55.000 0.00 0.00 46.73 3.06
4024 4678 1.236616 TGGCCACAAGCAAGATCACG 61.237 55.000 0.00 0.00 46.50 4.35
4025 4679 0.955428 GGCCACAAGCAAGATCACGA 60.955 55.000 0.00 0.00 46.50 4.35
4026 4680 0.166814 GCCACAAGCAAGATCACGAC 59.833 55.000 0.00 0.00 42.97 4.34
4027 4681 1.511850 CCACAAGCAAGATCACGACA 58.488 50.000 0.00 0.00 0.00 4.35
4028 4682 1.195448 CCACAAGCAAGATCACGACAC 59.805 52.381 0.00 0.00 0.00 3.67
4029 4683 1.866601 CACAAGCAAGATCACGACACA 59.133 47.619 0.00 0.00 0.00 3.72
4030 4684 2.287644 CACAAGCAAGATCACGACACAA 59.712 45.455 0.00 0.00 0.00 3.33
4031 4685 2.287915 ACAAGCAAGATCACGACACAAC 59.712 45.455 0.00 0.00 0.00 3.32
4032 4686 1.512926 AGCAAGATCACGACACAACC 58.487 50.000 0.00 0.00 0.00 3.77
4033 4687 1.202639 AGCAAGATCACGACACAACCA 60.203 47.619 0.00 0.00 0.00 3.67
4034 4688 1.601903 GCAAGATCACGACACAACCAA 59.398 47.619 0.00 0.00 0.00 3.67
4035 4689 2.226437 GCAAGATCACGACACAACCAAT 59.774 45.455 0.00 0.00 0.00 3.16
4036 4690 3.813800 CAAGATCACGACACAACCAATG 58.186 45.455 0.00 0.00 0.00 2.82
4037 4691 3.401033 AGATCACGACACAACCAATGA 57.599 42.857 0.00 0.00 0.00 2.57
4038 4692 3.942829 AGATCACGACACAACCAATGAT 58.057 40.909 0.00 0.00 0.00 2.45
4039 4693 5.084818 AGATCACGACACAACCAATGATA 57.915 39.130 0.00 0.00 0.00 2.15
4040 4694 5.674525 AGATCACGACACAACCAATGATAT 58.325 37.500 0.00 0.00 0.00 1.63
4041 4695 6.816136 AGATCACGACACAACCAATGATATA 58.184 36.000 0.00 0.00 0.00 0.86
4042 4696 6.925718 AGATCACGACACAACCAATGATATAG 59.074 38.462 0.00 0.00 0.00 1.31
4043 4697 4.808895 TCACGACACAACCAATGATATAGC 59.191 41.667 0.00 0.00 0.00 2.97
4044 4698 4.024893 CACGACACAACCAATGATATAGCC 60.025 45.833 0.00 0.00 0.00 3.93
4045 4699 3.184379 CGACACAACCAATGATATAGCCG 59.816 47.826 0.00 0.00 0.00 5.52
4046 4700 4.127171 GACACAACCAATGATATAGCCGT 58.873 43.478 0.00 0.00 0.00 5.68
4047 4701 4.127171 ACACAACCAATGATATAGCCGTC 58.873 43.478 0.00 0.00 0.00 4.79
4048 4702 3.184379 CACAACCAATGATATAGCCGTCG 59.816 47.826 0.00 0.00 0.00 5.12
4049 4703 3.069016 ACAACCAATGATATAGCCGTCGA 59.931 43.478 0.00 0.00 0.00 4.20
4050 4704 3.577649 ACCAATGATATAGCCGTCGAG 57.422 47.619 0.00 0.00 0.00 4.04
4051 4705 3.154710 ACCAATGATATAGCCGTCGAGA 58.845 45.455 0.00 0.00 0.00 4.04
4052 4706 3.191581 ACCAATGATATAGCCGTCGAGAG 59.808 47.826 0.00 0.00 0.00 3.20
4053 4707 3.428180 CCAATGATATAGCCGTCGAGAGG 60.428 52.174 0.00 2.63 0.00 3.69
4054 4708 2.563261 TGATATAGCCGTCGAGAGGT 57.437 50.000 8.46 0.55 0.00 3.85
4055 4709 3.690475 TGATATAGCCGTCGAGAGGTA 57.310 47.619 8.46 2.78 0.00 3.08
4056 4710 3.597255 TGATATAGCCGTCGAGAGGTAG 58.403 50.000 8.46 0.00 0.00 3.18
4057 4711 1.805869 TATAGCCGTCGAGAGGTAGC 58.194 55.000 8.46 0.00 0.00 3.58
4058 4712 0.179026 ATAGCCGTCGAGAGGTAGCA 60.179 55.000 8.46 0.00 0.00 3.49
4059 4713 1.094073 TAGCCGTCGAGAGGTAGCAC 61.094 60.000 8.46 0.00 0.00 4.40
4060 4714 2.799371 CCGTCGAGAGGTAGCACC 59.201 66.667 0.00 0.00 38.99 5.01
4061 4715 2.044555 CCGTCGAGAGGTAGCACCA 61.045 63.158 7.86 0.00 41.95 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 59 1.795872 TCGTCAACAAATGGCACGTAG 59.204 47.619 0.00 0.00 32.70 3.51
58 61 0.586319 CTCGTCAACAAATGGCACGT 59.414 50.000 0.00 0.00 32.70 4.49
59 62 0.586319 ACTCGTCAACAAATGGCACG 59.414 50.000 0.00 0.00 31.20 5.34
63 66 3.670055 GCAAATCACTCGTCAACAAATGG 59.330 43.478 0.00 0.00 0.00 3.16
69 72 2.287915 ACACTGCAAATCACTCGTCAAC 59.712 45.455 0.00 0.00 0.00 3.18
74 77 6.164408 TGTATAAACACTGCAAATCACTCG 57.836 37.500 0.00 0.00 0.00 4.18
75 78 7.023575 CCTTGTATAAACACTGCAAATCACTC 58.976 38.462 0.00 0.00 34.61 3.51
155 160 4.062991 ACTGTAGAAACTTTAAGGGCACG 58.937 43.478 0.00 0.00 0.00 5.34
205 211 4.927978 TGTTGATCAAAATTGTCGGGTT 57.072 36.364 10.35 0.00 0.00 4.11
206 212 4.340950 AGTTGTTGATCAAAATTGTCGGGT 59.659 37.500 10.35 0.00 37.81 5.28
207 213 4.870363 AGTTGTTGATCAAAATTGTCGGG 58.130 39.130 10.35 0.00 37.81 5.14
208 214 6.434596 TGTAGTTGTTGATCAAAATTGTCGG 58.565 36.000 10.35 0.00 37.81 4.79
210 216 9.462174 TTCATGTAGTTGTTGATCAAAATTGTC 57.538 29.630 10.35 0.00 37.81 3.18
241 247 4.993705 AACTCATTAAGGACCAGTGGAA 57.006 40.909 18.40 0.00 0.00 3.53
242 248 4.469945 CCTAACTCATTAAGGACCAGTGGA 59.530 45.833 18.40 0.00 0.00 4.02
254 260 4.658901 GGGGATCCAGTTCCTAACTCATTA 59.341 45.833 15.23 0.00 40.46 1.90
279 321 6.432403 AAAATTACATTCAAAGCCTTGGGA 57.568 33.333 0.00 0.00 33.01 4.37
407 452 0.902531 TCCGGCTCGAATCCTCTTTT 59.097 50.000 0.00 0.00 0.00 2.27
426 471 9.905171 GAAAATCAAGAAAATAGAAGCTCAAGT 57.095 29.630 0.00 0.00 0.00 3.16
443 488 2.331194 CAAGCTTGGCCGAAAATCAAG 58.669 47.619 19.14 0.00 40.38 3.02
458 503 1.003355 ACCTACGCATGTGCAAGCT 60.003 52.632 6.08 0.00 42.21 3.74
484 529 4.154918 GCCTGAAATCCTGTCTTAACACTG 59.845 45.833 0.00 0.00 0.00 3.66
492 537 3.073650 ACTTGAAGCCTGAAATCCTGTCT 59.926 43.478 0.00 0.00 0.00 3.41
494 539 3.515602 ACTTGAAGCCTGAAATCCTGT 57.484 42.857 0.00 0.00 0.00 4.00
514 559 2.038426 TCTGATCCGACCTGAAAAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
526 571 5.069648 AGCTATTTTCTCATGTCTGATCCGA 59.930 40.000 0.00 0.00 0.00 4.55
560 606 1.589414 AGACTAAGCCTGGCCTCAAT 58.411 50.000 16.57 0.00 0.00 2.57
564 610 2.292587 ACTAGAAGACTAAGCCTGGCCT 60.293 50.000 16.57 4.69 0.00 5.19
608 654 3.119319 TCATTATGTCTGGGTTGGGCTA 58.881 45.455 0.00 0.00 0.00 3.93
609 655 1.922447 TCATTATGTCTGGGTTGGGCT 59.078 47.619 0.00 0.00 0.00 5.19
615 661 4.462483 ACGCAAATTTCATTATGTCTGGGT 59.538 37.500 0.00 0.00 0.00 4.51
619 665 6.252967 TCACACGCAAATTTCATTATGTCT 57.747 33.333 0.00 0.00 0.00 3.41
625 672 5.058149 TGCTATCACACGCAAATTTCATT 57.942 34.783 0.00 0.00 32.40 2.57
631 678 5.163723 GCCATATATGCTATCACACGCAAAT 60.164 40.000 7.24 0.00 39.89 2.32
689 736 4.810491 ACCTCAACATTGCATTTTGTGTTC 59.190 37.500 0.00 0.00 32.87 3.18
732 779 0.466555 TTCCCCAGTTTTGTGTCGGG 60.467 55.000 0.00 0.00 36.59 5.14
785 832 1.119684 AAACCTTGGGTGAACAAGCC 58.880 50.000 0.00 0.00 44.98 4.35
797 844 0.967380 CTGGCCCCTAGCAAACCTTG 60.967 60.000 0.00 0.00 46.50 3.61
805 852 3.541713 CGGAGTCTGGCCCCTAGC 61.542 72.222 0.00 0.00 42.60 3.42
806 853 2.128507 GTCGGAGTCTGGCCCCTAG 61.129 68.421 0.00 0.00 0.00 3.02
807 854 2.043248 GTCGGAGTCTGGCCCCTA 60.043 66.667 0.00 0.00 0.00 3.53
808 855 3.999285 AGTCGGAGTCTGGCCCCT 61.999 66.667 0.00 0.00 0.00 4.79
809 856 3.775654 CAGTCGGAGTCTGGCCCC 61.776 72.222 0.00 0.00 39.88 5.80
936 987 2.674220 GGGGACTTGAGGGGAGCAG 61.674 68.421 0.00 0.00 0.00 4.24
1354 1405 6.892658 ACAGCATCACAAACCAAATTAGTA 57.107 33.333 0.00 0.00 0.00 1.82
1454 1506 7.218204 GCCTAAACTGATACAAAAATACGCTTG 59.782 37.037 0.00 0.00 0.00 4.01
1530 1582 6.634035 CACAGTACAACAAGTCATCAACATTG 59.366 38.462 0.00 0.00 0.00 2.82
1548 1601 6.102663 AGCAGAAAGATACACATCACAGTAC 58.897 40.000 0.00 0.00 33.21 2.73
1559 1612 5.188555 ACTCATGGAGAAGCAGAAAGATACA 59.811 40.000 0.00 0.00 33.32 2.29
1637 1690 4.471904 TGTGACATGAATGTAGACTCCC 57.528 45.455 0.00 0.00 41.95 4.30
1638 1691 5.694006 GCTATGTGACATGAATGTAGACTCC 59.306 44.000 8.61 0.00 41.95 3.85
1639 1692 6.511416 AGCTATGTGACATGAATGTAGACTC 58.489 40.000 8.61 0.00 41.95 3.36
1662 1715 4.157289 ACATCAATTGTAGGCAAGCAAGAG 59.843 41.667 5.13 0.00 36.57 2.85
1698 2213 0.908198 AGCTAAAGGGCTCAGACTGG 59.092 55.000 1.81 0.00 38.24 4.00
1878 2396 3.689649 CAGTTCTTTGCATGGTAGGTACC 59.310 47.826 2.73 2.73 46.62 3.34
1958 2580 5.415221 TGTTGGTCAAATCAAAGGTCAAAC 58.585 37.500 0.00 0.00 0.00 2.93
2210 2832 5.336213 GCCCATACAAGCAATATCAATGAGG 60.336 44.000 0.00 0.00 0.00 3.86
2296 2930 7.849804 TCAGCAGTTTCTGATTTAATCTACC 57.150 36.000 6.50 0.00 38.11 3.18
2529 3163 4.455533 GCATCCATACACAAGTGTTGAAGA 59.544 41.667 11.50 4.64 41.83 2.87
2600 3234 6.929606 AGGAATGTAGATAAATAACAGACGGC 59.070 38.462 0.00 0.00 0.00 5.68
2762 3396 7.158021 AGTTAAGAGACTGAAAAGAGGACATG 58.842 38.462 0.00 0.00 0.00 3.21
2889 3523 3.088532 TGGTAAGTACGGTCCGTATGTT 58.911 45.455 26.15 22.47 44.12 2.71
2952 3586 5.924356 TCAATATTTCGATCTGGCCAGTAA 58.076 37.500 31.58 14.98 0.00 2.24
3040 3674 1.672356 GCTTTGCTCTTCCTCGGCA 60.672 57.895 0.00 0.00 0.00 5.69
3043 3677 1.462670 GTTCAGCTTTGCTCTTCCTCG 59.537 52.381 0.00 0.00 36.40 4.63
3165 3799 2.423538 ACTAAAATAAGCTGCGCCCTTG 59.576 45.455 17.55 5.30 0.00 3.61
3245 3879 6.045318 CGAGGACAAATCAAGAGTGTATCAT 58.955 40.000 0.00 0.00 0.00 2.45
3252 3886 3.393800 CACACGAGGACAAATCAAGAGT 58.606 45.455 0.00 0.00 0.00 3.24
3270 3904 0.835941 AGGCCAACCAAAAATGCACA 59.164 45.000 5.01 0.00 39.06 4.57
3289 3923 3.255725 CCACACGCGTAATAGGAGAAAA 58.744 45.455 13.44 0.00 0.00 2.29
3384 4019 6.128063 ACGTGTGTTGTACTACTAAGAGATCC 60.128 42.308 8.88 0.00 0.00 3.36
3477 4129 4.434713 ACTGCGACAGTTTGAAAAACTT 57.565 36.364 6.67 0.00 42.59 2.66
3615 4269 2.781945 GCTTTGGCCGATATTCCTTG 57.218 50.000 0.00 0.00 0.00 3.61
3665 4319 1.957877 GCTCGGTGGCTATCTAGTTCT 59.042 52.381 0.00 0.00 0.00 3.01
3680 4334 0.461548 TAGCTTCTCATGTGGCTCGG 59.538 55.000 0.00 0.00 36.40 4.63
3687 4341 5.534654 GTGAGTAGAGGATAGCTTCTCATGT 59.465 44.000 0.00 1.21 40.36 3.21
3729 4383 2.235898 GTCAAGAAGAGGCTGTGAGGAT 59.764 50.000 0.00 0.00 0.00 3.24
3753 4407 3.891586 GACAGCGACGGCGTCAAGA 62.892 63.158 35.62 0.00 46.35 3.02
3754 4408 3.470567 GACAGCGACGGCGTCAAG 61.471 66.667 35.62 26.17 46.35 3.02
3763 4417 4.400109 TGCTCGTCCGACAGCGAC 62.400 66.667 14.32 0.00 40.82 5.19
3764 4418 4.103103 CTGCTCGTCCGACAGCGA 62.103 66.667 14.32 0.00 40.82 4.93
3765 4419 4.406173 ACTGCTCGTCCGACAGCG 62.406 66.667 14.69 12.12 34.72 5.18
3766 4420 2.505118 GACTGCTCGTCCGACAGC 60.505 66.667 13.09 13.09 36.62 4.40
3767 4421 0.318699 TTTGACTGCTCGTCCGACAG 60.319 55.000 13.76 13.76 42.13 3.51
3768 4422 0.318699 CTTTGACTGCTCGTCCGACA 60.319 55.000 0.00 0.00 42.13 4.35
3769 4423 1.618640 GCTTTGACTGCTCGTCCGAC 61.619 60.000 4.63 0.00 42.13 4.79
3770 4424 1.372997 GCTTTGACTGCTCGTCCGA 60.373 57.895 4.63 0.00 42.13 4.55
3771 4425 1.373497 AGCTTTGACTGCTCGTCCG 60.373 57.895 4.63 0.00 42.13 4.79
3772 4426 0.601311 ACAGCTTTGACTGCTCGTCC 60.601 55.000 4.63 0.00 42.13 4.79
3773 4427 2.065993 TACAGCTTTGACTGCTCGTC 57.934 50.000 0.00 0.53 41.60 4.20
3774 4428 2.029020 TCATACAGCTTTGACTGCTCGT 60.029 45.455 0.00 0.00 41.60 4.18
3775 4429 2.602211 CTCATACAGCTTTGACTGCTCG 59.398 50.000 0.00 0.00 41.60 5.03
3776 4430 3.616379 GTCTCATACAGCTTTGACTGCTC 59.384 47.826 0.00 0.00 41.60 4.26
3777 4431 3.594134 GTCTCATACAGCTTTGACTGCT 58.406 45.455 0.00 0.00 41.60 4.24
3778 4432 2.346847 CGTCTCATACAGCTTTGACTGC 59.653 50.000 0.00 0.00 41.60 4.40
3779 4433 3.366121 CACGTCTCATACAGCTTTGACTG 59.634 47.826 0.00 0.00 43.59 3.51
3780 4434 3.579709 CACGTCTCATACAGCTTTGACT 58.420 45.455 0.00 0.00 0.00 3.41
3781 4435 2.668457 CCACGTCTCATACAGCTTTGAC 59.332 50.000 0.00 0.00 0.00 3.18
3782 4436 2.930887 GCCACGTCTCATACAGCTTTGA 60.931 50.000 0.00 0.00 0.00 2.69
3783 4437 1.394917 GCCACGTCTCATACAGCTTTG 59.605 52.381 0.00 0.00 0.00 2.77
3784 4438 1.276421 AGCCACGTCTCATACAGCTTT 59.724 47.619 0.00 0.00 0.00 3.51
3785 4439 0.898320 AGCCACGTCTCATACAGCTT 59.102 50.000 0.00 0.00 0.00 3.74
3786 4440 0.174389 CAGCCACGTCTCATACAGCT 59.826 55.000 0.00 0.00 0.00 4.24
3787 4441 1.424493 GCAGCCACGTCTCATACAGC 61.424 60.000 0.00 0.00 0.00 4.40
3788 4442 0.807667 GGCAGCCACGTCTCATACAG 60.808 60.000 6.55 0.00 0.00 2.74
3789 4443 1.218047 GGCAGCCACGTCTCATACA 59.782 57.895 6.55 0.00 0.00 2.29
3790 4444 0.108138 AAGGCAGCCACGTCTCATAC 60.108 55.000 15.80 0.00 0.00 2.39
3791 4445 0.108186 CAAGGCAGCCACGTCTCATA 60.108 55.000 15.80 0.00 0.00 2.15
3792 4446 1.376424 CAAGGCAGCCACGTCTCAT 60.376 57.895 15.80 0.00 0.00 2.90
3793 4447 2.031012 CAAGGCAGCCACGTCTCA 59.969 61.111 15.80 0.00 0.00 3.27
3794 4448 2.029844 GACAAGGCAGCCACGTCTC 61.030 63.158 20.84 3.14 0.00 3.36
3795 4449 2.031163 GACAAGGCAGCCACGTCT 59.969 61.111 20.84 0.00 0.00 4.18
3796 4450 2.029844 GAGACAAGGCAGCCACGTC 61.030 63.158 20.64 20.64 0.00 4.34
3797 4451 2.031163 GAGACAAGGCAGCCACGT 59.969 61.111 15.80 10.15 0.00 4.49
3798 4452 3.114616 CGAGACAAGGCAGCCACG 61.115 66.667 15.80 6.37 0.00 4.94
3799 4453 3.426568 GCGAGACAAGGCAGCCAC 61.427 66.667 15.80 1.87 0.00 5.01
3800 4454 3.939939 TGCGAGACAAGGCAGCCA 61.940 61.111 15.80 0.00 33.52 4.75
3801 4455 3.426568 GTGCGAGACAAGGCAGCC 61.427 66.667 1.84 1.84 40.32 4.85
3802 4456 2.253758 TTGTGCGAGACAAGGCAGC 61.254 57.895 0.00 0.00 39.78 5.25
3803 4457 4.047834 TTGTGCGAGACAAGGCAG 57.952 55.556 0.00 0.00 39.78 4.85
3809 4463 0.608130 AGTAGGCATTGTGCGAGACA 59.392 50.000 0.00 0.00 46.21 3.41
3810 4464 1.002366 CAGTAGGCATTGTGCGAGAC 58.998 55.000 0.00 0.00 46.21 3.36
3811 4465 0.740868 GCAGTAGGCATTGTGCGAGA 60.741 55.000 0.00 0.00 46.21 4.04
3812 4466 1.709147 GGCAGTAGGCATTGTGCGAG 61.709 60.000 0.00 0.00 46.21 5.03
3813 4467 1.745115 GGCAGTAGGCATTGTGCGA 60.745 57.895 0.00 0.00 46.21 5.10
3814 4468 1.308069 AAGGCAGTAGGCATTGTGCG 61.308 55.000 0.00 0.00 46.23 5.34
3815 4469 2.571548 AAGGCAGTAGGCATTGTGC 58.428 52.632 0.00 0.00 46.23 4.57
3822 4476 1.750780 GGGAGCAAAGGCAGTAGGC 60.751 63.158 0.00 0.00 44.61 3.93
3823 4477 1.077429 GGGGAGCAAAGGCAGTAGG 60.077 63.158 0.00 0.00 44.61 3.18
3824 4478 0.393537 CAGGGGAGCAAAGGCAGTAG 60.394 60.000 0.00 0.00 44.61 2.57
3825 4479 0.840288 TCAGGGGAGCAAAGGCAGTA 60.840 55.000 0.00 0.00 44.61 2.74
3826 4480 1.504275 ATCAGGGGAGCAAAGGCAGT 61.504 55.000 0.00 0.00 44.61 4.40
3827 4481 1.035932 CATCAGGGGAGCAAAGGCAG 61.036 60.000 0.00 0.00 44.61 4.85
3828 4482 1.000521 CATCAGGGGAGCAAAGGCA 60.001 57.895 0.00 0.00 44.61 4.75
3829 4483 2.421399 GCATCAGGGGAGCAAAGGC 61.421 63.158 0.00 0.00 41.61 4.35
3830 4484 1.755783 GGCATCAGGGGAGCAAAGG 60.756 63.158 0.00 0.00 0.00 3.11
3831 4485 0.396695 ATGGCATCAGGGGAGCAAAG 60.397 55.000 0.00 0.00 0.00 2.77
3832 4486 0.396139 GATGGCATCAGGGGAGCAAA 60.396 55.000 22.23 0.00 0.00 3.68
3833 4487 1.228228 GATGGCATCAGGGGAGCAA 59.772 57.895 22.23 0.00 0.00 3.91
3834 4488 2.921435 GATGGCATCAGGGGAGCA 59.079 61.111 22.23 0.00 0.00 4.26
3835 4489 2.281345 CGATGGCATCAGGGGAGC 60.281 66.667 25.88 0.00 0.00 4.70
3836 4490 0.816825 CAACGATGGCATCAGGGGAG 60.817 60.000 25.88 11.63 0.00 4.30
3837 4491 1.224315 CAACGATGGCATCAGGGGA 59.776 57.895 25.88 0.00 0.00 4.81
3838 4492 1.077501 ACAACGATGGCATCAGGGG 60.078 57.895 25.88 12.67 0.00 4.79
3839 4493 0.677731 ACACAACGATGGCATCAGGG 60.678 55.000 25.88 17.94 0.00 4.45
3840 4494 1.135603 CAACACAACGATGGCATCAGG 60.136 52.381 25.88 16.39 0.00 3.86
3841 4495 1.730121 GCAACACAACGATGGCATCAG 60.730 52.381 25.88 19.75 0.00 2.90
3842 4496 0.240678 GCAACACAACGATGGCATCA 59.759 50.000 25.88 0.00 0.00 3.07
3843 4497 0.794229 CGCAACACAACGATGGCATC 60.794 55.000 17.58 17.58 0.00 3.91
3844 4498 1.209898 CGCAACACAACGATGGCAT 59.790 52.632 0.00 0.00 0.00 4.40
3845 4499 2.636462 CGCAACACAACGATGGCA 59.364 55.556 0.00 0.00 0.00 4.92
3846 4500 2.126888 CCGCAACACAACGATGGC 60.127 61.111 0.00 0.00 0.00 4.40
3847 4501 2.126888 GCCGCAACACAACGATGG 60.127 61.111 0.00 0.00 0.00 3.51
3848 4502 2.499520 CGCCGCAACACAACGATG 60.500 61.111 0.00 0.00 0.00 3.84
3849 4503 4.383602 GCGCCGCAACACAACGAT 62.384 61.111 3.15 0.00 0.00 3.73
3861 4515 4.622456 AAACAAACAGCGGCGCCG 62.622 61.111 43.13 43.13 43.09 6.46
3862 4516 1.880796 AAAAACAAACAGCGGCGCC 60.881 52.632 30.40 19.07 0.00 6.53
3863 4517 3.699671 AAAAACAAACAGCGGCGC 58.300 50.000 26.86 26.86 0.00 6.53
3879 4533 9.543783 ACGGTAAATATTTTGCCTTGTTTAAAA 57.456 25.926 5.91 0.00 0.00 1.52
3880 4534 9.543783 AACGGTAAATATTTTGCCTTGTTTAAA 57.456 25.926 5.91 0.00 0.00 1.52
3881 4535 9.543783 AAACGGTAAATATTTTGCCTTGTTTAA 57.456 25.926 5.91 0.00 0.00 1.52
3882 4536 9.543783 AAAACGGTAAATATTTTGCCTTGTTTA 57.456 25.926 5.91 0.00 0.00 2.01
3883 4537 8.439993 AAAACGGTAAATATTTTGCCTTGTTT 57.560 26.923 5.91 11.79 0.00 2.83
3884 4538 7.711339 TGAAAACGGTAAATATTTTGCCTTGTT 59.289 29.630 5.91 4.86 0.00 2.83
3885 4539 7.210873 TGAAAACGGTAAATATTTTGCCTTGT 58.789 30.769 5.91 2.03 0.00 3.16
3886 4540 7.644986 TGAAAACGGTAAATATTTTGCCTTG 57.355 32.000 5.91 1.48 0.00 3.61
3887 4541 8.716909 CAATGAAAACGGTAAATATTTTGCCTT 58.283 29.630 5.91 0.85 0.00 4.35
3888 4542 8.091449 TCAATGAAAACGGTAAATATTTTGCCT 58.909 29.630 5.91 0.00 0.00 4.75
3889 4543 8.245701 TCAATGAAAACGGTAAATATTTTGCC 57.754 30.769 5.91 8.45 0.00 4.52
3900 4554 9.496873 TCTTCTTCTTAATCAATGAAAACGGTA 57.503 29.630 0.00 0.00 0.00 4.02
3901 4555 8.391075 TCTTCTTCTTAATCAATGAAAACGGT 57.609 30.769 0.00 0.00 0.00 4.83
3902 4556 8.721478 TCTCTTCTTCTTAATCAATGAAAACGG 58.279 33.333 0.00 0.00 0.00 4.44
3903 4557 9.752274 CTCTCTTCTTCTTAATCAATGAAAACG 57.248 33.333 0.00 0.00 0.00 3.60
3907 4561 9.784531 ACAACTCTCTTCTTCTTAATCAATGAA 57.215 29.630 0.00 0.00 0.00 2.57
3908 4562 9.429359 GACAACTCTCTTCTTCTTAATCAATGA 57.571 33.333 0.00 0.00 0.00 2.57
3909 4563 9.434420 AGACAACTCTCTTCTTCTTAATCAATG 57.566 33.333 0.00 0.00 0.00 2.82
3910 4564 9.434420 CAGACAACTCTCTTCTTCTTAATCAAT 57.566 33.333 0.00 0.00 0.00 2.57
3911 4565 8.642432 TCAGACAACTCTCTTCTTCTTAATCAA 58.358 33.333 0.00 0.00 0.00 2.57
3912 4566 8.183104 TCAGACAACTCTCTTCTTCTTAATCA 57.817 34.615 0.00 0.00 0.00 2.57
3913 4567 9.651913 AATCAGACAACTCTCTTCTTCTTAATC 57.348 33.333 0.00 0.00 0.00 1.75
3940 4594 8.875803 GGTTTTTCGTCCAGTTTTTCTTTAATT 58.124 29.630 0.00 0.00 0.00 1.40
3941 4595 8.255206 AGGTTTTTCGTCCAGTTTTTCTTTAAT 58.745 29.630 0.00 0.00 0.00 1.40
3942 4596 7.604549 AGGTTTTTCGTCCAGTTTTTCTTTAA 58.395 30.769 0.00 0.00 0.00 1.52
3943 4597 7.160547 AGGTTTTTCGTCCAGTTTTTCTTTA 57.839 32.000 0.00 0.00 0.00 1.85
3944 4598 6.032956 AGGTTTTTCGTCCAGTTTTTCTTT 57.967 33.333 0.00 0.00 0.00 2.52
3945 4599 5.654603 AGGTTTTTCGTCCAGTTTTTCTT 57.345 34.783 0.00 0.00 0.00 2.52
3946 4600 6.762702 TTAGGTTTTTCGTCCAGTTTTTCT 57.237 33.333 0.00 0.00 0.00 2.52
3947 4601 7.997107 ATTTAGGTTTTTCGTCCAGTTTTTC 57.003 32.000 0.00 0.00 0.00 2.29
3948 4602 9.304731 GTAATTTAGGTTTTTCGTCCAGTTTTT 57.695 29.630 0.00 0.00 0.00 1.94
3949 4603 8.468399 TGTAATTTAGGTTTTTCGTCCAGTTTT 58.532 29.630 0.00 0.00 0.00 2.43
3950 4604 7.998580 TGTAATTTAGGTTTTTCGTCCAGTTT 58.001 30.769 0.00 0.00 0.00 2.66
3951 4605 7.571080 TGTAATTTAGGTTTTTCGTCCAGTT 57.429 32.000 0.00 0.00 0.00 3.16
3952 4606 7.571080 TTGTAATTTAGGTTTTTCGTCCAGT 57.429 32.000 0.00 0.00 0.00 4.00
3953 4607 7.380333 GGTTTGTAATTTAGGTTTTTCGTCCAG 59.620 37.037 0.00 0.00 0.00 3.86
3954 4608 7.201835 GGTTTGTAATTTAGGTTTTTCGTCCA 58.798 34.615 0.00 0.00 0.00 4.02
3955 4609 6.642131 GGGTTTGTAATTTAGGTTTTTCGTCC 59.358 38.462 0.00 0.00 0.00 4.79
3956 4610 6.642131 GGGGTTTGTAATTTAGGTTTTTCGTC 59.358 38.462 0.00 0.00 0.00 4.20
3957 4611 6.097981 TGGGGTTTGTAATTTAGGTTTTTCGT 59.902 34.615 0.00 0.00 0.00 3.85
3958 4612 6.421501 GTGGGGTTTGTAATTTAGGTTTTTCG 59.578 38.462 0.00 0.00 0.00 3.46
3959 4613 7.273712 TGTGGGGTTTGTAATTTAGGTTTTTC 58.726 34.615 0.00 0.00 0.00 2.29
3960 4614 7.196637 TGTGGGGTTTGTAATTTAGGTTTTT 57.803 32.000 0.00 0.00 0.00 1.94
3961 4615 6.809976 TGTGGGGTTTGTAATTTAGGTTTT 57.190 33.333 0.00 0.00 0.00 2.43
3962 4616 6.183361 CCTTGTGGGGTTTGTAATTTAGGTTT 60.183 38.462 0.00 0.00 0.00 3.27
3963 4617 5.305902 CCTTGTGGGGTTTGTAATTTAGGTT 59.694 40.000 0.00 0.00 0.00 3.50
3964 4618 4.836175 CCTTGTGGGGTTTGTAATTTAGGT 59.164 41.667 0.00 0.00 0.00 3.08
3965 4619 5.400066 CCTTGTGGGGTTTGTAATTTAGG 57.600 43.478 0.00 0.00 0.00 2.69
3980 4634 3.286751 CGTGTGTGCCCCTTGTGG 61.287 66.667 0.00 0.00 0.00 4.17
3981 4635 1.821759 TTCGTGTGTGCCCCTTGTG 60.822 57.895 0.00 0.00 0.00 3.33
3982 4636 1.822186 GTTCGTGTGTGCCCCTTGT 60.822 57.895 0.00 0.00 0.00 3.16
3983 4637 2.892334 CGTTCGTGTGTGCCCCTTG 61.892 63.158 0.00 0.00 0.00 3.61
3984 4638 2.590575 CGTTCGTGTGTGCCCCTT 60.591 61.111 0.00 0.00 0.00 3.95
3985 4639 3.542676 TCGTTCGTGTGTGCCCCT 61.543 61.111 0.00 0.00 0.00 4.79
3986 4640 3.343421 GTCGTTCGTGTGTGCCCC 61.343 66.667 0.00 0.00 0.00 5.80
3987 4641 3.343421 GGTCGTTCGTGTGTGCCC 61.343 66.667 0.00 0.00 0.00 5.36
3988 4642 2.279918 AGGTCGTTCGTGTGTGCC 60.280 61.111 0.00 0.00 0.00 5.01
3989 4643 2.594962 CCAGGTCGTTCGTGTGTGC 61.595 63.158 0.00 0.00 0.00 4.57
3990 4644 2.594962 GCCAGGTCGTTCGTGTGTG 61.595 63.158 0.00 0.00 0.00 3.82
3991 4645 2.279918 GCCAGGTCGTTCGTGTGT 60.280 61.111 0.00 0.00 0.00 3.72
3992 4646 3.041940 GGCCAGGTCGTTCGTGTG 61.042 66.667 0.00 0.00 0.00 3.82
3993 4647 3.542676 TGGCCAGGTCGTTCGTGT 61.543 61.111 0.00 0.00 0.00 4.49
3994 4648 3.041940 GTGGCCAGGTCGTTCGTG 61.042 66.667 5.11 0.00 0.00 4.35
3995 4649 2.989055 CTTGTGGCCAGGTCGTTCGT 62.989 60.000 5.11 0.00 0.00 3.85
3996 4650 2.280524 TTGTGGCCAGGTCGTTCG 60.281 61.111 5.11 0.00 0.00 3.95
3997 4651 2.617274 GCTTGTGGCCAGGTCGTTC 61.617 63.158 5.11 0.00 34.27 3.95
3998 4652 2.594592 GCTTGTGGCCAGGTCGTT 60.595 61.111 5.11 0.00 34.27 3.85
3999 4653 3.414136 TTGCTTGTGGCCAGGTCGT 62.414 57.895 5.11 0.00 40.92 4.34
4000 4654 2.594303 TTGCTTGTGGCCAGGTCG 60.594 61.111 5.11 0.00 40.92 4.79
4001 4655 0.610232 ATCTTGCTTGTGGCCAGGTC 60.610 55.000 5.11 0.00 40.92 3.85
4002 4656 0.610232 GATCTTGCTTGTGGCCAGGT 60.610 55.000 5.11 0.00 40.92 4.00
4003 4657 0.609957 TGATCTTGCTTGTGGCCAGG 60.610 55.000 5.11 0.00 40.92 4.45
4004 4658 0.524862 GTGATCTTGCTTGTGGCCAG 59.475 55.000 5.11 0.00 40.92 4.85
4005 4659 1.236616 CGTGATCTTGCTTGTGGCCA 61.237 55.000 0.00 0.00 40.92 5.36
4006 4660 0.955428 TCGTGATCTTGCTTGTGGCC 60.955 55.000 0.00 0.00 40.92 5.36
4007 4661 0.166814 GTCGTGATCTTGCTTGTGGC 59.833 55.000 0.00 0.00 42.22 5.01
4008 4662 1.195448 GTGTCGTGATCTTGCTTGTGG 59.805 52.381 0.00 0.00 0.00 4.17
4009 4663 1.866601 TGTGTCGTGATCTTGCTTGTG 59.133 47.619 0.00 0.00 0.00 3.33
4010 4664 2.238942 TGTGTCGTGATCTTGCTTGT 57.761 45.000 0.00 0.00 0.00 3.16
4011 4665 2.349817 GGTTGTGTCGTGATCTTGCTTG 60.350 50.000 0.00 0.00 0.00 4.01
4012 4666 1.873591 GGTTGTGTCGTGATCTTGCTT 59.126 47.619 0.00 0.00 0.00 3.91
4013 4667 1.202639 TGGTTGTGTCGTGATCTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
4014 4668 1.225855 TGGTTGTGTCGTGATCTTGC 58.774 50.000 0.00 0.00 0.00 4.01
4015 4669 3.498018 TCATTGGTTGTGTCGTGATCTTG 59.502 43.478 0.00 0.00 0.00 3.02
4016 4670 3.738982 TCATTGGTTGTGTCGTGATCTT 58.261 40.909 0.00 0.00 0.00 2.40
4017 4671 3.401033 TCATTGGTTGTGTCGTGATCT 57.599 42.857 0.00 0.00 0.00 2.75
4018 4672 5.991328 ATATCATTGGTTGTGTCGTGATC 57.009 39.130 0.00 0.00 0.00 2.92
4019 4673 5.466728 GCTATATCATTGGTTGTGTCGTGAT 59.533 40.000 0.00 0.00 0.00 3.06
4020 4674 4.808895 GCTATATCATTGGTTGTGTCGTGA 59.191 41.667 0.00 0.00 0.00 4.35
4021 4675 4.024893 GGCTATATCATTGGTTGTGTCGTG 60.025 45.833 0.00 0.00 0.00 4.35
4022 4676 4.127171 GGCTATATCATTGGTTGTGTCGT 58.873 43.478 0.00 0.00 0.00 4.34
4023 4677 3.184379 CGGCTATATCATTGGTTGTGTCG 59.816 47.826 0.00 0.00 0.00 4.35
4024 4678 4.127171 ACGGCTATATCATTGGTTGTGTC 58.873 43.478 0.00 0.00 0.00 3.67
4025 4679 4.127171 GACGGCTATATCATTGGTTGTGT 58.873 43.478 0.00 0.00 0.00 3.72
4026 4680 3.184379 CGACGGCTATATCATTGGTTGTG 59.816 47.826 0.00 0.00 0.00 3.33
4027 4681 3.069016 TCGACGGCTATATCATTGGTTGT 59.931 43.478 0.00 0.00 0.00 3.32
4028 4682 3.649073 TCGACGGCTATATCATTGGTTG 58.351 45.455 0.00 0.00 0.00 3.77
4029 4683 3.572682 TCTCGACGGCTATATCATTGGTT 59.427 43.478 0.00 0.00 0.00 3.67
4030 4684 3.154710 TCTCGACGGCTATATCATTGGT 58.845 45.455 0.00 0.00 0.00 3.67
4031 4685 3.428180 CCTCTCGACGGCTATATCATTGG 60.428 52.174 0.00 0.00 0.00 3.16
4032 4686 3.191581 ACCTCTCGACGGCTATATCATTG 59.808 47.826 0.00 0.00 0.00 2.82
4033 4687 3.422796 ACCTCTCGACGGCTATATCATT 58.577 45.455 0.00 0.00 0.00 2.57
4034 4688 3.074675 ACCTCTCGACGGCTATATCAT 57.925 47.619 0.00 0.00 0.00 2.45
4035 4689 2.563261 ACCTCTCGACGGCTATATCA 57.437 50.000 0.00 0.00 0.00 2.15
4036 4690 2.352342 GCTACCTCTCGACGGCTATATC 59.648 54.545 0.00 0.00 0.00 1.63
4037 4691 2.290134 TGCTACCTCTCGACGGCTATAT 60.290 50.000 0.00 0.00 0.00 0.86
4038 4692 1.071228 TGCTACCTCTCGACGGCTATA 59.929 52.381 0.00 0.00 0.00 1.31
4039 4693 0.179026 TGCTACCTCTCGACGGCTAT 60.179 55.000 0.00 0.00 0.00 2.97
4040 4694 1.094073 GTGCTACCTCTCGACGGCTA 61.094 60.000 0.00 0.00 0.00 3.93
4041 4695 2.045242 TGCTACCTCTCGACGGCT 60.045 61.111 0.00 0.00 0.00 5.52
4042 4696 2.102553 GTGCTACCTCTCGACGGC 59.897 66.667 0.00 0.00 0.00 5.68
4043 4697 2.044555 TGGTGCTACCTCTCGACGG 61.045 63.158 0.00 0.00 39.58 4.79
4044 4698 3.587095 TGGTGCTACCTCTCGACG 58.413 61.111 6.83 0.00 39.58 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.