Multiple sequence alignment - TraesCS6B01G209300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G209300 chr6B 100.000 2930 0 0 1 2930 275924538 275927467 0.000000e+00 5411.0
1 TraesCS6B01G209300 chr6B 100.000 69 0 0 2862 2930 584057372 584057304 8.520000e-26 128.0
2 TraesCS6B01G209300 chr6A 96.467 2236 66 11 619 2847 192831228 192828999 0.000000e+00 3679.0
3 TraesCS6B01G209300 chr6A 91.176 102 6 3 395 493 192831326 192831225 5.090000e-28 135.0
4 TraesCS6B01G209300 chr6A 100.000 70 0 0 2861 2930 46062192 46062123 2.370000e-26 130.0
5 TraesCS6B01G209300 chr6A 97.500 40 1 0 2343 2382 192829558 192829519 5.240000e-08 69.4
6 TraesCS6B01G209300 chr6D 96.124 1961 46 14 395 2325 151506402 151508362 0.000000e+00 3173.0
7 TraesCS6B01G209300 chr6D 94.595 518 24 3 2343 2858 151508323 151508838 0.000000e+00 798.0
8 TraesCS6B01G209300 chr5D 88.144 388 31 6 1 386 10986155 10986529 5.760000e-122 448.0
9 TraesCS6B01G209300 chr5D 84.987 393 48 9 3 392 35181902 35181518 3.540000e-104 388.0
10 TraesCS6B01G209300 chr1D 87.565 386 35 7 3 387 228825310 228824937 4.480000e-118 435.0
11 TraesCS6B01G209300 chr1A 86.375 389 45 7 1 386 517086041 517086424 4.520000e-113 418.0
12 TraesCS6B01G209300 chr7D 85.455 385 43 8 4 387 513205027 513204655 3.540000e-104 388.0
13 TraesCS6B01G209300 chr7D 100.000 30 0 0 816 845 431269779 431269750 4.080000e-04 56.5
14 TraesCS6B01G209300 chr2B 85.090 389 49 8 1 385 737933177 737933560 3.540000e-104 388.0
15 TraesCS6B01G209300 chr2B 82.653 392 61 7 3 391 28213280 28212893 1.010000e-89 340.0
16 TraesCS6B01G209300 chr2B 100.000 69 0 0 2862 2930 384105416 384105484 8.520000e-26 128.0
17 TraesCS6B01G209300 chr4A 84.974 386 51 7 1 385 695770805 695770426 4.580000e-103 385.0
18 TraesCS6B01G209300 chr4A 100.000 70 0 0 2861 2930 301818673 301818742 2.370000e-26 130.0
19 TraesCS6B01G209300 chr5B 81.233 373 54 13 3 367 679406041 679405677 1.330000e-73 287.0
20 TraesCS6B01G209300 chr7B 80.444 225 17 11 178 377 7712220 7712442 2.350000e-31 147.0
21 TraesCS6B01G209300 chr7B 100.000 69 0 0 2862 2930 6987376 6987308 8.520000e-26 128.0
22 TraesCS6B01G209300 chr7B 100.000 69 0 0 2862 2930 48114851 48114919 8.520000e-26 128.0
23 TraesCS6B01G209300 chr7B 100.000 69 0 0 2862 2930 579488789 579488721 8.520000e-26 128.0
24 TraesCS6B01G209300 chr7B 73.973 292 62 10 2346 2631 438498529 438498812 3.990000e-19 106.0
25 TraesCS6B01G209300 chr4B 100.000 70 0 0 2861 2930 614026046 614025977 2.370000e-26 130.0
26 TraesCS6B01G209300 chr3A 100.000 70 0 0 2861 2930 140958006 140958075 2.370000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G209300 chr6B 275924538 275927467 2929 False 5411.000000 5411 100.000000 1 2930 1 chr6B.!!$F1 2929
1 TraesCS6B01G209300 chr6A 192828999 192831326 2327 True 1294.466667 3679 95.047667 395 2847 3 chr6A.!!$R2 2452
2 TraesCS6B01G209300 chr6D 151506402 151508838 2436 False 1985.500000 3173 95.359500 395 2858 2 chr6D.!!$F1 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.034337 GTTGCAGAGACCGGGTGTAA 59.966 55.0 3.3 0.25 0.0 2.41 F
645 664 0.106149 GTGGTGGTCGTGTCCTCTTT 59.894 55.0 0.0 0.00 0.0 2.52 F
1047 1073 0.108138 GTCACCATCTTCCTCCACCG 60.108 60.0 0.0 0.00 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1262 1.045350 TCTCGCCTCCATCCTGAAGG 61.045 60.000 0.00 0.0 0.00 3.46 R
1883 1909 2.048603 GTGCCTGGGTTCCATCTGC 61.049 63.158 0.00 0.0 30.82 4.26 R
2832 2864 0.115745 ACCGGAAAGGAGGGAGTGTA 59.884 55.000 9.46 0.0 45.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.728397 AGCTTTCGGGGTGAAAACC 58.272 52.632 0.00 0.00 45.59 3.27
19 20 0.826256 AGCTTTCGGGGTGAAAACCC 60.826 55.000 5.30 5.30 45.59 4.11
42 43 3.038788 GGTTTGGCCTTAATGGTTGTG 57.961 47.619 3.32 0.00 38.35 3.33
43 44 2.412870 GTTTGGCCTTAATGGTTGTGC 58.587 47.619 3.32 0.00 38.35 4.57
44 45 1.709578 TTGGCCTTAATGGTTGTGCA 58.290 45.000 3.32 0.00 38.35 4.57
45 46 1.935799 TGGCCTTAATGGTTGTGCAT 58.064 45.000 3.32 0.00 38.35 3.96
46 47 1.549620 TGGCCTTAATGGTTGTGCATG 59.450 47.619 3.32 0.00 38.35 4.06
47 48 1.824230 GGCCTTAATGGTTGTGCATGA 59.176 47.619 0.00 0.00 38.35 3.07
48 49 2.417243 GGCCTTAATGGTTGTGCATGAC 60.417 50.000 0.00 0.00 38.35 3.06
49 50 2.731968 GCCTTAATGGTTGTGCATGACG 60.732 50.000 0.00 0.00 38.35 4.35
50 51 2.159393 CCTTAATGGTTGTGCATGACGG 60.159 50.000 0.00 0.00 0.00 4.79
51 52 2.192664 TAATGGTTGTGCATGACGGT 57.807 45.000 0.00 0.00 0.00 4.83
52 53 0.597568 AATGGTTGTGCATGACGGTG 59.402 50.000 0.00 0.00 0.00 4.94
53 54 0.250684 ATGGTTGTGCATGACGGTGA 60.251 50.000 0.00 0.00 0.00 4.02
54 55 1.163420 TGGTTGTGCATGACGGTGAC 61.163 55.000 0.00 0.00 0.00 3.67
55 56 1.574428 GTTGTGCATGACGGTGACC 59.426 57.895 0.00 0.00 0.00 4.02
56 57 0.884704 GTTGTGCATGACGGTGACCT 60.885 55.000 0.00 0.00 0.00 3.85
57 58 0.179032 TTGTGCATGACGGTGACCTT 60.179 50.000 0.00 0.00 0.00 3.50
58 59 0.884259 TGTGCATGACGGTGACCTTG 60.884 55.000 0.00 0.00 0.00 3.61
59 60 0.884704 GTGCATGACGGTGACCTTGT 60.885 55.000 0.00 0.00 0.00 3.16
60 61 0.179032 TGCATGACGGTGACCTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
61 62 1.070914 TGCATGACGGTGACCTTGTTA 59.929 47.619 0.00 0.00 0.00 2.41
62 63 2.147958 GCATGACGGTGACCTTGTTAA 58.852 47.619 0.00 0.00 0.00 2.01
63 64 2.550606 GCATGACGGTGACCTTGTTAAA 59.449 45.455 0.00 0.00 0.00 1.52
64 65 3.364964 GCATGACGGTGACCTTGTTAAAG 60.365 47.826 0.00 0.00 0.00 1.85
77 78 6.529463 CCTTGTTAAAGGCATTGTTTTGAG 57.471 37.500 0.00 0.00 46.50 3.02
78 79 6.279882 CCTTGTTAAAGGCATTGTTTTGAGA 58.720 36.000 0.00 0.00 46.50 3.27
79 80 6.421801 CCTTGTTAAAGGCATTGTTTTGAGAG 59.578 38.462 0.00 0.00 46.50 3.20
80 81 5.288804 TGTTAAAGGCATTGTTTTGAGAGC 58.711 37.500 0.00 0.00 0.00 4.09
81 82 2.712057 AAGGCATTGTTTTGAGAGCG 57.288 45.000 0.00 0.00 0.00 5.03
82 83 0.242017 AGGCATTGTTTTGAGAGCGC 59.758 50.000 0.00 0.00 0.00 5.92
83 84 1.067199 GGCATTGTTTTGAGAGCGCG 61.067 55.000 0.00 0.00 0.00 6.86
84 85 0.110238 GCATTGTTTTGAGAGCGCGA 60.110 50.000 12.10 0.00 0.00 5.87
85 86 1.662876 GCATTGTTTTGAGAGCGCGAA 60.663 47.619 12.10 0.00 0.00 4.70
86 87 2.855180 CATTGTTTTGAGAGCGCGAAT 58.145 42.857 12.10 0.00 0.00 3.34
87 88 2.594529 TTGTTTTGAGAGCGCGAATC 57.405 45.000 12.10 7.03 0.00 2.52
88 89 1.795768 TGTTTTGAGAGCGCGAATCT 58.204 45.000 12.10 12.86 0.00 2.40
89 90 2.143122 TGTTTTGAGAGCGCGAATCTT 58.857 42.857 12.10 0.00 0.00 2.40
90 91 2.157668 TGTTTTGAGAGCGCGAATCTTC 59.842 45.455 12.10 7.21 0.00 2.87
91 92 2.370281 TTTGAGAGCGCGAATCTTCT 57.630 45.000 12.10 3.53 0.00 2.85
92 93 1.914634 TTGAGAGCGCGAATCTTCTC 58.085 50.000 12.10 13.50 0.00 2.87
93 94 0.101399 TGAGAGCGCGAATCTTCTCC 59.899 55.000 12.10 0.66 0.00 3.71
94 95 0.101399 GAGAGCGCGAATCTTCTCCA 59.899 55.000 12.10 0.00 0.00 3.86
95 96 0.102120 AGAGCGCGAATCTTCTCCAG 59.898 55.000 12.10 0.00 0.00 3.86
96 97 0.873743 GAGCGCGAATCTTCTCCAGG 60.874 60.000 12.10 0.00 0.00 4.45
97 98 1.141881 GCGCGAATCTTCTCCAGGA 59.858 57.895 12.10 0.00 0.00 3.86
98 99 0.249657 GCGCGAATCTTCTCCAGGAT 60.250 55.000 12.10 0.00 0.00 3.24
99 100 1.495878 CGCGAATCTTCTCCAGGATG 58.504 55.000 0.00 0.00 0.00 3.51
100 101 1.067669 CGCGAATCTTCTCCAGGATGA 59.932 52.381 0.00 0.00 39.69 2.92
101 102 2.481969 CGCGAATCTTCTCCAGGATGAA 60.482 50.000 0.00 0.00 39.69 2.57
102 103 2.869192 GCGAATCTTCTCCAGGATGAAC 59.131 50.000 0.00 0.00 39.69 3.18
103 104 3.679917 GCGAATCTTCTCCAGGATGAACA 60.680 47.826 0.00 0.00 39.69 3.18
104 105 3.868077 CGAATCTTCTCCAGGATGAACAC 59.132 47.826 0.00 0.00 39.69 3.32
105 106 3.922171 ATCTTCTCCAGGATGAACACC 57.078 47.619 0.00 0.00 39.69 4.16
106 107 2.907892 TCTTCTCCAGGATGAACACCT 58.092 47.619 0.00 0.00 39.69 4.00
107 108 4.061131 TCTTCTCCAGGATGAACACCTA 57.939 45.455 0.00 0.00 39.69 3.08
108 109 4.425772 TCTTCTCCAGGATGAACACCTAA 58.574 43.478 0.00 0.00 39.69 2.69
109 110 4.467795 TCTTCTCCAGGATGAACACCTAAG 59.532 45.833 0.00 0.00 39.69 2.18
110 111 4.061131 TCTCCAGGATGAACACCTAAGA 57.939 45.455 0.00 0.00 39.69 2.10
111 112 4.624913 TCTCCAGGATGAACACCTAAGAT 58.375 43.478 0.00 0.00 39.69 2.40
112 113 4.651503 TCTCCAGGATGAACACCTAAGATC 59.348 45.833 0.00 0.00 39.69 2.75
113 114 4.624913 TCCAGGATGAACACCTAAGATCT 58.375 43.478 0.00 0.00 39.69 2.75
114 115 5.777449 TCCAGGATGAACACCTAAGATCTA 58.223 41.667 0.00 0.00 39.69 1.98
115 116 5.835819 TCCAGGATGAACACCTAAGATCTAG 59.164 44.000 0.00 0.00 39.69 2.43
116 117 5.011533 CCAGGATGAACACCTAAGATCTAGG 59.988 48.000 13.60 13.60 39.69 3.02
117 118 5.835819 CAGGATGAACACCTAAGATCTAGGA 59.164 44.000 19.24 0.00 39.69 2.94
118 119 6.496565 CAGGATGAACACCTAAGATCTAGGAT 59.503 42.308 19.24 8.57 39.69 3.24
119 120 6.723977 AGGATGAACACCTAAGATCTAGGATC 59.276 42.308 19.24 14.85 38.09 3.36
120 121 6.495181 GGATGAACACCTAAGATCTAGGATCA 59.505 42.308 19.24 18.06 38.09 2.92
121 122 6.968263 TGAACACCTAAGATCTAGGATCAG 57.032 41.667 19.24 11.17 38.09 2.90
122 123 5.835819 TGAACACCTAAGATCTAGGATCAGG 59.164 44.000 19.24 10.13 38.09 3.86
123 124 4.156477 ACACCTAAGATCTAGGATCAGGC 58.844 47.826 19.24 0.00 38.09 4.85
124 125 3.192422 CACCTAAGATCTAGGATCAGGCG 59.808 52.174 19.24 0.56 38.09 5.52
125 126 3.074687 ACCTAAGATCTAGGATCAGGCGA 59.925 47.826 19.24 0.00 38.09 5.54
126 127 4.264172 ACCTAAGATCTAGGATCAGGCGAT 60.264 45.833 19.24 0.00 38.09 4.58
127 128 4.097741 CCTAAGATCTAGGATCAGGCGATG 59.902 50.000 10.96 0.00 36.85 3.84
128 129 3.448093 AGATCTAGGATCAGGCGATGA 57.552 47.619 9.71 0.00 43.70 2.92
129 130 3.088532 AGATCTAGGATCAGGCGATGAC 58.911 50.000 9.71 0.00 41.91 3.06
130 131 1.239347 TCTAGGATCAGGCGATGACG 58.761 55.000 0.00 0.00 41.91 4.35
131 132 0.242286 CTAGGATCAGGCGATGACGG 59.758 60.000 0.00 0.00 41.91 4.79
132 133 0.467474 TAGGATCAGGCGATGACGGT 60.467 55.000 0.00 0.00 41.91 4.83
133 134 1.592669 GGATCAGGCGATGACGGTG 60.593 63.158 0.00 0.00 41.91 4.94
134 135 1.592669 GATCAGGCGATGACGGTGG 60.593 63.158 0.00 0.00 41.91 4.61
135 136 2.298158 GATCAGGCGATGACGGTGGT 62.298 60.000 0.00 0.00 41.91 4.16
136 137 1.899437 ATCAGGCGATGACGGTGGTT 61.899 55.000 0.00 0.00 41.91 3.67
137 138 2.100631 CAGGCGATGACGGTGGTTC 61.101 63.158 0.00 0.00 40.15 3.62
138 139 2.264794 GGCGATGACGGTGGTTCT 59.735 61.111 0.00 0.00 40.15 3.01
139 140 2.100631 GGCGATGACGGTGGTTCTG 61.101 63.158 0.00 0.00 40.15 3.02
140 141 2.740714 GCGATGACGGTGGTTCTGC 61.741 63.158 0.00 0.00 40.15 4.26
141 142 1.374125 CGATGACGGTGGTTCTGCA 60.374 57.895 0.00 0.00 35.72 4.41
142 143 1.626654 CGATGACGGTGGTTCTGCAC 61.627 60.000 0.00 0.00 35.72 4.57
150 151 4.475527 GGTTCTGCACCGTTTCCT 57.524 55.556 0.00 0.00 35.12 3.36
151 152 2.715536 GGTTCTGCACCGTTTCCTT 58.284 52.632 0.00 0.00 35.12 3.36
152 153 0.591659 GGTTCTGCACCGTTTCCTTC 59.408 55.000 0.00 0.00 35.12 3.46
153 154 1.594331 GTTCTGCACCGTTTCCTTCT 58.406 50.000 0.00 0.00 0.00 2.85
154 155 1.947456 GTTCTGCACCGTTTCCTTCTT 59.053 47.619 0.00 0.00 0.00 2.52
155 156 1.593196 TCTGCACCGTTTCCTTCTTG 58.407 50.000 0.00 0.00 0.00 3.02
156 157 0.593128 CTGCACCGTTTCCTTCTTGG 59.407 55.000 0.00 0.00 37.10 3.61
157 158 0.181587 TGCACCGTTTCCTTCTTGGA 59.818 50.000 0.00 0.00 44.51 3.53
166 167 2.930826 TCCTTCTTGGAAGCTTCGTT 57.069 45.000 19.91 0.00 42.94 3.85
167 168 3.208747 TCCTTCTTGGAAGCTTCGTTT 57.791 42.857 19.91 0.00 42.94 3.60
168 169 3.551846 TCCTTCTTGGAAGCTTCGTTTT 58.448 40.909 19.91 0.00 42.94 2.43
169 170 4.710324 TCCTTCTTGGAAGCTTCGTTTTA 58.290 39.130 19.91 4.90 42.94 1.52
170 171 4.755123 TCCTTCTTGGAAGCTTCGTTTTAG 59.245 41.667 19.91 13.35 42.94 1.85
171 172 4.083271 CCTTCTTGGAAGCTTCGTTTTAGG 60.083 45.833 19.91 17.74 38.35 2.69
172 173 4.345859 TCTTGGAAGCTTCGTTTTAGGA 57.654 40.909 19.91 8.23 0.00 2.94
173 174 4.315803 TCTTGGAAGCTTCGTTTTAGGAG 58.684 43.478 19.91 8.53 0.00 3.69
174 175 4.039973 TCTTGGAAGCTTCGTTTTAGGAGA 59.960 41.667 19.91 10.43 0.00 3.71
175 176 4.345859 TGGAAGCTTCGTTTTAGGAGAA 57.654 40.909 19.91 0.00 0.00 2.87
176 177 4.906618 TGGAAGCTTCGTTTTAGGAGAAT 58.093 39.130 19.91 0.00 0.00 2.40
177 178 5.313712 TGGAAGCTTCGTTTTAGGAGAATT 58.686 37.500 19.91 0.00 0.00 2.17
178 179 6.469410 TGGAAGCTTCGTTTTAGGAGAATTA 58.531 36.000 19.91 0.00 0.00 1.40
179 180 6.594159 TGGAAGCTTCGTTTTAGGAGAATTAG 59.406 38.462 19.91 0.00 0.00 1.73
180 181 6.037281 GGAAGCTTCGTTTTAGGAGAATTAGG 59.963 42.308 19.91 0.00 0.00 2.69
181 182 6.295719 AGCTTCGTTTTAGGAGAATTAGGA 57.704 37.500 0.00 0.00 0.00 2.94
182 183 6.890293 AGCTTCGTTTTAGGAGAATTAGGAT 58.110 36.000 0.00 0.00 0.00 3.24
183 184 7.339482 AGCTTCGTTTTAGGAGAATTAGGATT 58.661 34.615 0.00 0.00 0.00 3.01
184 185 7.829706 AGCTTCGTTTTAGGAGAATTAGGATTT 59.170 33.333 0.00 0.00 0.00 2.17
185 186 8.123575 GCTTCGTTTTAGGAGAATTAGGATTTC 58.876 37.037 0.00 0.00 0.00 2.17
186 187 7.766219 TCGTTTTAGGAGAATTAGGATTTCG 57.234 36.000 0.00 0.00 0.00 3.46
187 188 6.759827 TCGTTTTAGGAGAATTAGGATTTCGG 59.240 38.462 0.00 0.00 0.00 4.30
188 189 6.018180 CGTTTTAGGAGAATTAGGATTTCGGG 60.018 42.308 0.00 0.00 0.00 5.14
189 190 6.570654 TTTAGGAGAATTAGGATTTCGGGT 57.429 37.500 0.00 0.00 0.00 5.28
190 191 4.423625 AGGAGAATTAGGATTTCGGGTG 57.576 45.455 0.00 0.00 0.00 4.61
191 192 3.780850 AGGAGAATTAGGATTTCGGGTGT 59.219 43.478 0.00 0.00 0.00 4.16
192 193 4.227527 AGGAGAATTAGGATTTCGGGTGTT 59.772 41.667 0.00 0.00 0.00 3.32
193 194 4.335594 GGAGAATTAGGATTTCGGGTGTTG 59.664 45.833 0.00 0.00 0.00 3.33
194 195 4.918588 AGAATTAGGATTTCGGGTGTTGT 58.081 39.130 0.00 0.00 0.00 3.32
195 196 4.941873 AGAATTAGGATTTCGGGTGTTGTC 59.058 41.667 0.00 0.00 0.00 3.18
196 197 4.569719 ATTAGGATTTCGGGTGTTGTCT 57.430 40.909 0.00 0.00 0.00 3.41
197 198 5.687166 ATTAGGATTTCGGGTGTTGTCTA 57.313 39.130 0.00 0.00 0.00 2.59
198 199 3.611766 AGGATTTCGGGTGTTGTCTAG 57.388 47.619 0.00 0.00 0.00 2.43
199 200 2.236395 AGGATTTCGGGTGTTGTCTAGG 59.764 50.000 0.00 0.00 0.00 3.02
200 201 2.027469 GGATTTCGGGTGTTGTCTAGGT 60.027 50.000 0.00 0.00 0.00 3.08
201 202 2.536761 TTTCGGGTGTTGTCTAGGTG 57.463 50.000 0.00 0.00 0.00 4.00
202 203 0.682852 TTCGGGTGTTGTCTAGGTGG 59.317 55.000 0.00 0.00 0.00 4.61
203 204 0.470456 TCGGGTGTTGTCTAGGTGGT 60.470 55.000 0.00 0.00 0.00 4.16
204 205 0.320421 CGGGTGTTGTCTAGGTGGTG 60.320 60.000 0.00 0.00 0.00 4.17
205 206 0.036306 GGGTGTTGTCTAGGTGGTGG 59.964 60.000 0.00 0.00 0.00 4.61
206 207 0.763035 GGTGTTGTCTAGGTGGTGGT 59.237 55.000 0.00 0.00 0.00 4.16
207 208 1.142262 GGTGTTGTCTAGGTGGTGGTT 59.858 52.381 0.00 0.00 0.00 3.67
208 209 2.490991 GTGTTGTCTAGGTGGTGGTTC 58.509 52.381 0.00 0.00 0.00 3.62
209 210 1.069513 TGTTGTCTAGGTGGTGGTTCG 59.930 52.381 0.00 0.00 0.00 3.95
210 211 1.069668 GTTGTCTAGGTGGTGGTTCGT 59.930 52.381 0.00 0.00 0.00 3.85
211 212 0.677288 TGTCTAGGTGGTGGTTCGTG 59.323 55.000 0.00 0.00 0.00 4.35
212 213 0.669625 GTCTAGGTGGTGGTTCGTGC 60.670 60.000 0.00 0.00 0.00 5.34
213 214 0.830444 TCTAGGTGGTGGTTCGTGCT 60.830 55.000 0.00 0.00 0.00 4.40
214 215 0.670546 CTAGGTGGTGGTTCGTGCTG 60.671 60.000 0.00 0.00 0.00 4.41
215 216 2.725203 TAGGTGGTGGTTCGTGCTGC 62.725 60.000 0.00 0.00 0.00 5.25
216 217 2.899838 GTGGTGGTTCGTGCTGCA 60.900 61.111 0.00 0.00 0.00 4.41
217 218 2.591429 TGGTGGTTCGTGCTGCAG 60.591 61.111 10.11 10.11 0.00 4.41
218 219 4.030452 GGTGGTTCGTGCTGCAGC 62.030 66.667 31.89 31.89 42.50 5.25
219 220 2.974698 GTGGTTCGTGCTGCAGCT 60.975 61.111 36.61 0.00 42.66 4.24
220 221 1.667830 GTGGTTCGTGCTGCAGCTA 60.668 57.895 36.61 21.64 42.66 3.32
221 222 1.667830 TGGTTCGTGCTGCAGCTAC 60.668 57.895 36.61 28.99 42.66 3.58
222 223 2.730672 GGTTCGTGCTGCAGCTACG 61.731 63.158 36.30 36.30 42.46 3.51
223 224 1.733041 GTTCGTGCTGCAGCTACGA 60.733 57.895 38.39 38.39 45.32 3.43
224 225 1.444383 TTCGTGCTGCAGCTACGAG 60.444 57.895 38.68 26.92 46.39 4.18
225 226 2.819117 TTCGTGCTGCAGCTACGAGG 62.819 60.000 38.68 27.14 46.39 4.63
226 227 2.573869 GTGCTGCAGCTACGAGGA 59.426 61.111 36.61 14.44 42.66 3.71
227 228 1.079819 GTGCTGCAGCTACGAGGAA 60.080 57.895 36.61 13.65 42.66 3.36
228 229 0.460987 GTGCTGCAGCTACGAGGAAT 60.461 55.000 36.61 0.00 42.66 3.01
229 230 0.250234 TGCTGCAGCTACGAGGAATT 59.750 50.000 36.61 0.00 42.66 2.17
230 231 0.654683 GCTGCAGCTACGAGGAATTG 59.345 55.000 31.33 0.00 38.21 2.32
231 232 1.740380 GCTGCAGCTACGAGGAATTGA 60.740 52.381 31.33 0.00 38.21 2.57
232 233 2.831333 CTGCAGCTACGAGGAATTGAT 58.169 47.619 0.00 0.00 0.00 2.57
233 234 2.799412 CTGCAGCTACGAGGAATTGATC 59.201 50.000 0.00 0.00 0.00 2.92
234 235 1.789464 GCAGCTACGAGGAATTGATCG 59.211 52.381 7.22 7.22 44.36 3.69
235 236 1.789464 CAGCTACGAGGAATTGATCGC 59.211 52.381 8.42 0.00 42.61 4.58
236 237 1.683917 AGCTACGAGGAATTGATCGCT 59.316 47.619 8.42 0.00 42.61 4.93
237 238 1.789464 GCTACGAGGAATTGATCGCTG 59.211 52.381 8.42 4.00 42.61 5.18
238 239 1.789464 CTACGAGGAATTGATCGCTGC 59.211 52.381 8.42 0.00 42.61 5.25
239 240 0.176680 ACGAGGAATTGATCGCTGCT 59.823 50.000 8.42 0.00 42.61 4.24
240 241 0.580578 CGAGGAATTGATCGCTGCTG 59.419 55.000 0.00 0.00 31.42 4.41
241 242 1.661341 GAGGAATTGATCGCTGCTGT 58.339 50.000 0.00 0.00 0.00 4.40
242 243 2.799562 CGAGGAATTGATCGCTGCTGTA 60.800 50.000 0.00 0.00 31.42 2.74
243 244 2.799412 GAGGAATTGATCGCTGCTGTAG 59.201 50.000 0.00 0.00 0.00 2.74
244 245 1.869767 GGAATTGATCGCTGCTGTAGG 59.130 52.381 0.00 0.00 0.00 3.18
245 246 2.483714 GGAATTGATCGCTGCTGTAGGA 60.484 50.000 0.00 0.00 0.00 2.94
246 247 3.397482 GAATTGATCGCTGCTGTAGGAT 58.603 45.455 0.00 0.00 0.00 3.24
247 248 2.515926 TTGATCGCTGCTGTAGGATC 57.484 50.000 13.33 13.33 35.44 3.36
248 249 1.402787 TGATCGCTGCTGTAGGATCA 58.597 50.000 16.68 16.68 39.08 2.92
249 250 1.966354 TGATCGCTGCTGTAGGATCAT 59.034 47.619 16.68 0.00 37.78 2.45
250 251 2.366590 TGATCGCTGCTGTAGGATCATT 59.633 45.455 16.68 0.00 37.78 2.57
251 252 2.515926 TCGCTGCTGTAGGATCATTC 57.484 50.000 0.00 0.00 0.00 2.67
252 253 2.034878 TCGCTGCTGTAGGATCATTCT 58.965 47.619 0.00 0.00 0.00 2.40
253 254 2.432146 TCGCTGCTGTAGGATCATTCTT 59.568 45.455 0.00 0.00 0.00 2.52
254 255 3.118629 TCGCTGCTGTAGGATCATTCTTT 60.119 43.478 0.00 0.00 0.00 2.52
255 256 3.624861 CGCTGCTGTAGGATCATTCTTTT 59.375 43.478 0.00 0.00 0.00 2.27
256 257 4.095483 CGCTGCTGTAGGATCATTCTTTTT 59.905 41.667 0.00 0.00 0.00 1.94
257 258 5.576895 GCTGCTGTAGGATCATTCTTTTTC 58.423 41.667 0.00 0.00 0.00 2.29
258 259 5.356470 GCTGCTGTAGGATCATTCTTTTTCT 59.644 40.000 0.00 0.00 0.00 2.52
259 260 6.127786 GCTGCTGTAGGATCATTCTTTTTCTT 60.128 38.462 0.00 0.00 0.00 2.52
260 261 7.576477 GCTGCTGTAGGATCATTCTTTTTCTTT 60.576 37.037 0.00 0.00 0.00 2.52
261 262 8.181904 TGCTGTAGGATCATTCTTTTTCTTTT 57.818 30.769 0.00 0.00 0.00 2.27
262 263 8.299570 TGCTGTAGGATCATTCTTTTTCTTTTC 58.700 33.333 0.00 0.00 0.00 2.29
263 264 8.518702 GCTGTAGGATCATTCTTTTTCTTTTCT 58.481 33.333 0.00 0.00 0.00 2.52
293 294 6.900568 TTTTTATTGTCTTTTGGCTGTGTG 57.099 33.333 0.00 0.00 0.00 3.82
294 295 2.514205 ATTGTCTTTTGGCTGTGTGC 57.486 45.000 0.00 0.00 41.94 4.57
295 296 0.100325 TTGTCTTTTGGCTGTGTGCG 59.900 50.000 0.00 0.00 44.05 5.34
296 297 1.029408 TGTCTTTTGGCTGTGTGCGT 61.029 50.000 0.00 0.00 44.05 5.24
297 298 0.100503 GTCTTTTGGCTGTGTGCGTT 59.899 50.000 0.00 0.00 44.05 4.84
298 299 0.814457 TCTTTTGGCTGTGTGCGTTT 59.186 45.000 0.00 0.00 44.05 3.60
299 300 0.922717 CTTTTGGCTGTGTGCGTTTG 59.077 50.000 0.00 0.00 44.05 2.93
300 301 0.244994 TTTTGGCTGTGTGCGTTTGT 59.755 45.000 0.00 0.00 44.05 2.83
301 302 1.095600 TTTGGCTGTGTGCGTTTGTA 58.904 45.000 0.00 0.00 44.05 2.41
302 303 1.095600 TTGGCTGTGTGCGTTTGTAA 58.904 45.000 0.00 0.00 44.05 2.41
303 304 1.313772 TGGCTGTGTGCGTTTGTAAT 58.686 45.000 0.00 0.00 44.05 1.89
304 305 1.001924 TGGCTGTGTGCGTTTGTAATG 60.002 47.619 0.00 0.00 44.05 1.90
305 306 1.001815 GGCTGTGTGCGTTTGTAATGT 60.002 47.619 0.00 0.00 44.05 2.71
306 307 2.307049 GCTGTGTGCGTTTGTAATGTC 58.693 47.619 0.00 0.00 0.00 3.06
307 308 2.032030 GCTGTGTGCGTTTGTAATGTCT 60.032 45.455 0.00 0.00 0.00 3.41
308 309 3.548014 GCTGTGTGCGTTTGTAATGTCTT 60.548 43.478 0.00 0.00 0.00 3.01
309 310 4.597079 CTGTGTGCGTTTGTAATGTCTTT 58.403 39.130 0.00 0.00 0.00 2.52
310 311 5.736486 TGTGTGCGTTTGTAATGTCTTTA 57.264 34.783 0.00 0.00 0.00 1.85
311 312 5.503498 TGTGTGCGTTTGTAATGTCTTTAC 58.497 37.500 2.41 2.41 40.59 2.01
312 313 4.605594 GTGTGCGTTTGTAATGTCTTTACG 59.394 41.667 4.65 0.00 42.68 3.18
313 314 4.507021 TGTGCGTTTGTAATGTCTTTACGA 59.493 37.500 0.00 0.55 42.68 3.43
314 315 5.177881 TGTGCGTTTGTAATGTCTTTACGAT 59.822 36.000 0.00 0.00 42.68 3.73
315 316 6.365518 TGTGCGTTTGTAATGTCTTTACGATA 59.634 34.615 0.00 0.00 42.68 2.92
316 317 7.063662 TGTGCGTTTGTAATGTCTTTACGATAT 59.936 33.333 0.00 0.00 42.68 1.63
317 318 7.901377 GTGCGTTTGTAATGTCTTTACGATATT 59.099 33.333 0.00 0.00 42.68 1.28
318 319 7.900864 TGCGTTTGTAATGTCTTTACGATATTG 59.099 33.333 0.00 0.00 42.68 1.90
319 320 7.097570 GCGTTTGTAATGTCTTTACGATATTGC 60.098 37.037 0.00 0.00 42.68 3.56
320 321 7.108309 CGTTTGTAATGTCTTTACGATATTGCG 59.892 37.037 0.00 0.00 42.68 4.85
322 323 7.528481 TGTAATGTCTTTACGATATTGCGTT 57.472 32.000 0.00 0.00 42.71 4.84
323 324 7.395645 TGTAATGTCTTTACGATATTGCGTTG 58.604 34.615 0.00 0.00 42.71 4.10
324 325 6.417191 AATGTCTTTACGATATTGCGTTGT 57.583 33.333 0.00 0.00 42.71 3.32
325 326 5.849357 TGTCTTTACGATATTGCGTTGTT 57.151 34.783 0.00 0.00 42.71 2.83
326 327 5.613812 TGTCTTTACGATATTGCGTTGTTG 58.386 37.500 0.00 0.00 42.71 3.33
327 328 4.490890 GTCTTTACGATATTGCGTTGTTGC 59.509 41.667 0.00 0.00 42.71 4.17
328 329 4.152580 TCTTTACGATATTGCGTTGTTGCA 59.847 37.500 0.00 0.00 42.71 4.08
334 335 3.731136 TGCGTTGTTGCAGAGACC 58.269 55.556 0.00 0.00 40.62 3.85
335 336 2.243957 TGCGTTGTTGCAGAGACCG 61.244 57.895 0.00 0.00 40.62 4.79
336 337 2.954753 GCGTTGTTGCAGAGACCGG 61.955 63.158 0.00 0.00 34.15 5.28
337 338 2.317609 CGTTGTTGCAGAGACCGGG 61.318 63.158 6.32 0.00 0.00 5.73
338 339 1.227853 GTTGTTGCAGAGACCGGGT 60.228 57.895 6.32 0.00 0.00 5.28
339 340 1.227823 TTGTTGCAGAGACCGGGTG 60.228 57.895 3.30 0.00 0.00 4.61
340 341 1.978455 TTGTTGCAGAGACCGGGTGT 61.978 55.000 3.30 0.00 0.00 4.16
341 342 1.116536 TGTTGCAGAGACCGGGTGTA 61.117 55.000 3.30 0.00 0.00 2.90
342 343 0.034337 GTTGCAGAGACCGGGTGTAA 59.966 55.000 3.30 0.25 0.00 2.41
343 344 0.981183 TTGCAGAGACCGGGTGTAAT 59.019 50.000 3.30 0.00 0.00 1.89
344 345 0.981183 TGCAGAGACCGGGTGTAATT 59.019 50.000 3.30 0.00 0.00 1.40
345 346 1.338674 TGCAGAGACCGGGTGTAATTG 60.339 52.381 3.30 1.37 0.00 2.32
346 347 2.012051 GCAGAGACCGGGTGTAATTGG 61.012 57.143 3.30 0.00 0.00 3.16
347 348 1.278127 CAGAGACCGGGTGTAATTGGT 59.722 52.381 3.30 0.00 37.44 3.67
348 349 2.498481 CAGAGACCGGGTGTAATTGGTA 59.502 50.000 3.30 0.00 34.12 3.25
349 350 3.134081 CAGAGACCGGGTGTAATTGGTAT 59.866 47.826 3.30 0.00 34.12 2.73
350 351 3.387050 AGAGACCGGGTGTAATTGGTATC 59.613 47.826 3.30 0.00 41.78 2.24
351 352 3.381335 AGACCGGGTGTAATTGGTATCT 58.619 45.455 3.30 0.00 34.12 1.98
352 353 3.387050 AGACCGGGTGTAATTGGTATCTC 59.613 47.826 3.30 0.00 34.12 2.75
353 354 2.436911 ACCGGGTGTAATTGGTATCTCC 59.563 50.000 6.32 0.00 31.60 3.71
354 355 2.547218 CCGGGTGTAATTGGTATCTCCG 60.547 54.545 0.00 0.00 39.52 4.63
355 356 2.490991 GGGTGTAATTGGTATCTCCGC 58.509 52.381 0.00 0.00 39.52 5.54
356 357 2.104281 GGGTGTAATTGGTATCTCCGCT 59.896 50.000 0.00 0.00 39.52 5.52
357 358 3.322828 GGGTGTAATTGGTATCTCCGCTA 59.677 47.826 0.00 0.00 39.52 4.26
358 359 4.020485 GGGTGTAATTGGTATCTCCGCTAT 60.020 45.833 0.00 0.00 39.52 2.97
359 360 5.186409 GGGTGTAATTGGTATCTCCGCTATA 59.814 44.000 0.00 0.00 39.52 1.31
360 361 6.127140 GGGTGTAATTGGTATCTCCGCTATAT 60.127 42.308 0.00 0.00 39.52 0.86
361 362 7.328737 GGTGTAATTGGTATCTCCGCTATATT 58.671 38.462 0.00 0.00 39.52 1.28
362 363 7.822822 GGTGTAATTGGTATCTCCGCTATATTT 59.177 37.037 0.00 0.00 39.52 1.40
363 364 9.865321 GTGTAATTGGTATCTCCGCTATATTTA 57.135 33.333 0.00 0.00 39.52 1.40
409 410 6.517605 AGTTGTTTGGTTGTGTAACTTGTTT 58.482 32.000 0.00 0.00 38.04 2.83
437 438 7.930325 TGATGGCATAAACATTTTTCTGAACAA 59.070 29.630 0.00 0.00 0.00 2.83
442 443 9.801714 GCATAAACATTTTTCTGAACAAGATTG 57.198 29.630 0.00 0.00 33.93 2.67
556 561 5.183969 GGAGGGTAGAAATTGTAGGTCAAC 58.816 45.833 0.00 0.00 38.97 3.18
560 565 6.070710 AGGGTAGAAATTGTAGGTCAACTCTC 60.071 42.308 0.00 0.00 38.97 3.20
562 567 7.036829 GGTAGAAATTGTAGGTCAACTCTCTC 58.963 42.308 0.00 0.00 38.97 3.20
566 571 6.524101 AATTGTAGGTCAACTCTCTCTCTC 57.476 41.667 0.00 0.00 38.97 3.20
568 573 4.839121 TGTAGGTCAACTCTCTCTCTCTC 58.161 47.826 0.00 0.00 0.00 3.20
569 574 4.534500 TGTAGGTCAACTCTCTCTCTCTCT 59.466 45.833 0.00 0.00 0.00 3.10
570 575 3.955471 AGGTCAACTCTCTCTCTCTCTG 58.045 50.000 0.00 0.00 0.00 3.35
571 576 3.016736 GGTCAACTCTCTCTCTCTCTGG 58.983 54.545 0.00 0.00 0.00 3.86
572 577 2.423538 GTCAACTCTCTCTCTCTCTGGC 59.576 54.545 0.00 0.00 0.00 4.85
573 578 1.750778 CAACTCTCTCTCTCTCTGGCC 59.249 57.143 0.00 0.00 0.00 5.36
574 579 0.258774 ACTCTCTCTCTCTCTGGCCC 59.741 60.000 0.00 0.00 0.00 5.80
575 580 0.552848 CTCTCTCTCTCTCTGGCCCT 59.447 60.000 0.00 0.00 0.00 5.19
616 635 1.714787 TGTCTGGTGAGGGGTAGTAGT 59.285 52.381 0.00 0.00 0.00 2.73
642 661 2.342648 GGTGGTGGTCGTGTCCTC 59.657 66.667 0.00 0.00 0.00 3.71
643 662 2.207924 GGTGGTGGTCGTGTCCTCT 61.208 63.158 0.00 0.00 0.00 3.69
645 664 0.106149 GTGGTGGTCGTGTCCTCTTT 59.894 55.000 0.00 0.00 0.00 2.52
746 769 3.119602 GCCGTTCCTTTACATCTTTTCCC 60.120 47.826 0.00 0.00 0.00 3.97
895 919 2.426023 GTCGTCCCTTGCCACACT 59.574 61.111 0.00 0.00 0.00 3.55
896 920 1.227853 GTCGTCCCTTGCCACACTT 60.228 57.895 0.00 0.00 0.00 3.16
906 930 1.846007 TGCCACACTTGAGGTTTGTT 58.154 45.000 0.00 0.00 0.00 2.83
926 950 6.954487 TGTTTGTAGATAAGATAGAGGCGA 57.046 37.500 0.00 0.00 0.00 5.54
1047 1073 0.108138 GTCACCATCTTCCTCCACCG 60.108 60.000 0.00 0.00 0.00 4.94
1053 1079 2.356125 CCATCTTCCTCCACCGTTCAAT 60.356 50.000 0.00 0.00 0.00 2.57
1239 1265 4.351054 CCTTCAGGTGGCGGCCTT 62.351 66.667 21.46 2.85 36.58 4.35
1344 1370 2.048597 CGGGACAGCGCTAACACA 60.049 61.111 10.99 0.00 0.00 3.72
1620 1646 4.048470 GGGAAGGGGCAGGTGGTC 62.048 72.222 0.00 0.00 0.00 4.02
2125 2156 9.093970 TCTACATCAGTTATTGTTTCGGTTATG 57.906 33.333 0.00 0.00 0.00 1.90
2332 2364 2.159014 GGGTTGTTTGGTTCCTTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
2333 2365 2.498078 GGTTGTTTGGTTCCTTGGTTCA 59.502 45.455 0.00 0.00 0.00 3.18
2342 2374 3.255888 GGTTCCTTGGTTCACAGGATTTC 59.744 47.826 0.00 0.00 0.00 2.17
2345 2377 4.541705 TCCTTGGTTCACAGGATTTCAAA 58.458 39.130 0.00 0.00 0.00 2.69
2373 2405 7.094205 ACACATGAATTCTATCAACTTGGGTTC 60.094 37.037 7.05 0.00 32.73 3.62
2434 2466 7.901029 TGATAAACATGGCCAAATTAAAGTCA 58.099 30.769 10.96 7.73 0.00 3.41
2438 2470 4.987912 ACATGGCCAAATTAAAGTCAAACG 59.012 37.500 10.96 0.00 0.00 3.60
2505 2537 4.902443 TGGTCTTGTTTTTCGTGCATAA 57.098 36.364 0.00 0.00 0.00 1.90
2614 2646 3.244491 CCTTTGCCCCATTCATTTGAACA 60.244 43.478 0.00 0.00 36.80 3.18
2827 2859 9.176181 TGTAAGCGCAAGTTCTTTAATTTAAAG 57.824 29.630 18.75 18.75 42.57 1.85
2830 2862 9.908152 AAGCGCAAGTTCTTTAATTTAAAGTAT 57.092 25.926 22.17 11.04 42.17 2.12
2831 2863 9.341899 AGCGCAAGTTCTTTAATTTAAAGTATG 57.658 29.630 22.17 17.70 42.17 2.39
2832 2864 9.124807 GCGCAAGTTCTTTAATTTAAAGTATGT 57.875 29.630 22.17 9.22 42.17 2.29
2849 2881 1.263356 TGTACACTCCCTCCTTTCCG 58.737 55.000 0.00 0.00 0.00 4.30
2852 2884 1.192803 ACACTCCCTCCTTTCCGGTC 61.193 60.000 0.00 0.00 0.00 4.79
2853 2885 1.157751 ACTCCCTCCTTTCCGGTCA 59.842 57.895 0.00 0.00 0.00 4.02
2854 2886 0.252742 ACTCCCTCCTTTCCGGTCAT 60.253 55.000 0.00 0.00 0.00 3.06
2855 2887 1.007963 ACTCCCTCCTTTCCGGTCATA 59.992 52.381 0.00 0.00 0.00 2.15
2856 2888 1.689273 CTCCCTCCTTTCCGGTCATAG 59.311 57.143 0.00 0.00 0.00 2.23
2858 2890 1.691482 CCCTCCTTTCCGGTCATAGGA 60.691 57.143 0.00 8.74 35.57 2.94
2859 2891 2.330216 CCTCCTTTCCGGTCATAGGAT 58.670 52.381 14.01 0.00 37.65 3.24
2860 2892 2.706190 CCTCCTTTCCGGTCATAGGATT 59.294 50.000 14.01 0.00 37.65 3.01
2861 2893 3.136626 CCTCCTTTCCGGTCATAGGATTT 59.863 47.826 14.01 0.00 37.65 2.17
2862 2894 4.385310 CCTCCTTTCCGGTCATAGGATTTT 60.385 45.833 14.01 0.00 37.65 1.82
2863 2895 5.187621 TCCTTTCCGGTCATAGGATTTTT 57.812 39.130 0.00 0.00 37.65 1.94
2884 2916 4.600692 TTTTTAGAGAAAAGGCCAAGGC 57.399 40.909 5.01 1.52 35.96 4.35
2894 2926 4.657952 GCCAAGGCCCGACTTTAT 57.342 55.556 0.00 0.00 34.56 1.40
2895 2927 3.792712 GCCAAGGCCCGACTTTATA 57.207 52.632 0.00 0.00 34.56 0.98
2896 2928 1.594331 GCCAAGGCCCGACTTTATAG 58.406 55.000 0.00 0.00 34.56 1.31
2897 2929 1.140252 GCCAAGGCCCGACTTTATAGA 59.860 52.381 0.00 0.00 34.56 1.98
2898 2930 2.224548 GCCAAGGCCCGACTTTATAGAT 60.225 50.000 0.00 0.00 34.56 1.98
2899 2931 3.007614 GCCAAGGCCCGACTTTATAGATA 59.992 47.826 0.00 0.00 34.56 1.98
2900 2932 4.504340 GCCAAGGCCCGACTTTATAGATAA 60.504 45.833 0.00 0.00 34.56 1.75
2901 2933 5.617252 CCAAGGCCCGACTTTATAGATAAA 58.383 41.667 0.00 0.00 0.00 1.40
2902 2934 7.730663 GCCAAGGCCCGACTTTATAGATAAAG 61.731 46.154 16.88 16.88 43.23 1.85
2923 2955 4.457496 CCAGGCAGCGTCACGGAT 62.457 66.667 0.00 0.00 0.00 4.18
2924 2956 2.494445 CAGGCAGCGTCACGGATA 59.506 61.111 0.00 0.00 0.00 2.59
2925 2957 1.878522 CAGGCAGCGTCACGGATAC 60.879 63.158 0.00 0.00 0.00 2.24
2926 2958 2.585247 GGCAGCGTCACGGATACC 60.585 66.667 0.00 0.00 0.00 2.73
2927 2959 2.183300 GCAGCGTCACGGATACCA 59.817 61.111 0.00 0.00 0.00 3.25
2928 2960 2.165301 GCAGCGTCACGGATACCAC 61.165 63.158 0.00 0.00 0.00 4.16
2929 2961 1.214325 CAGCGTCACGGATACCACA 59.786 57.895 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.728397 GGTTTTCACCCCGAAAGCT 58.272 52.632 0.00 0.00 44.32 3.74
22 23 2.870035 GCACAACCATTAAGGCCAAACC 60.870 50.000 5.01 0.00 43.14 3.27
23 24 2.224161 TGCACAACCATTAAGGCCAAAC 60.224 45.455 5.01 0.00 43.14 2.93
24 25 2.042464 TGCACAACCATTAAGGCCAAA 58.958 42.857 5.01 0.00 43.14 3.28
25 26 1.709578 TGCACAACCATTAAGGCCAA 58.290 45.000 5.01 0.00 43.14 4.52
26 27 1.549620 CATGCACAACCATTAAGGCCA 59.450 47.619 5.01 0.00 43.14 5.36
27 28 1.824230 TCATGCACAACCATTAAGGCC 59.176 47.619 0.00 0.00 43.14 5.19
28 29 2.731968 CGTCATGCACAACCATTAAGGC 60.732 50.000 0.00 0.00 43.14 4.35
29 30 2.159393 CCGTCATGCACAACCATTAAGG 60.159 50.000 0.00 0.00 45.67 2.69
30 31 2.487762 ACCGTCATGCACAACCATTAAG 59.512 45.455 0.00 0.00 0.00 1.85
31 32 2.227626 CACCGTCATGCACAACCATTAA 59.772 45.455 0.00 0.00 0.00 1.40
32 33 1.809547 CACCGTCATGCACAACCATTA 59.190 47.619 0.00 0.00 0.00 1.90
33 34 0.597568 CACCGTCATGCACAACCATT 59.402 50.000 0.00 0.00 0.00 3.16
34 35 0.250684 TCACCGTCATGCACAACCAT 60.251 50.000 0.00 0.00 0.00 3.55
35 36 1.147153 TCACCGTCATGCACAACCA 59.853 52.632 0.00 0.00 0.00 3.67
36 37 1.574428 GTCACCGTCATGCACAACC 59.426 57.895 0.00 0.00 0.00 3.77
37 38 0.884704 AGGTCACCGTCATGCACAAC 60.885 55.000 0.00 0.00 0.00 3.32
38 39 0.179032 AAGGTCACCGTCATGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
39 40 0.884259 CAAGGTCACCGTCATGCACA 60.884 55.000 0.00 0.00 0.00 4.57
40 41 0.884704 ACAAGGTCACCGTCATGCAC 60.885 55.000 0.00 0.00 0.00 4.57
41 42 0.179032 AACAAGGTCACCGTCATGCA 60.179 50.000 0.00 0.00 0.00 3.96
42 43 1.803334 TAACAAGGTCACCGTCATGC 58.197 50.000 0.00 0.00 0.00 4.06
43 44 3.188460 CCTTTAACAAGGTCACCGTCATG 59.812 47.826 0.00 0.00 44.46 3.07
44 45 3.408634 CCTTTAACAAGGTCACCGTCAT 58.591 45.455 0.00 0.00 44.46 3.06
45 46 2.841215 CCTTTAACAAGGTCACCGTCA 58.159 47.619 0.00 0.00 44.46 4.35
55 56 6.074142 GCTCTCAAAACAATGCCTTTAACAAG 60.074 38.462 0.00 0.00 0.00 3.16
56 57 5.752955 GCTCTCAAAACAATGCCTTTAACAA 59.247 36.000 0.00 0.00 0.00 2.83
57 58 5.288804 GCTCTCAAAACAATGCCTTTAACA 58.711 37.500 0.00 0.00 0.00 2.41
58 59 4.382754 CGCTCTCAAAACAATGCCTTTAAC 59.617 41.667 0.00 0.00 0.00 2.01
59 60 4.545610 CGCTCTCAAAACAATGCCTTTAA 58.454 39.130 0.00 0.00 0.00 1.52
60 61 3.611530 GCGCTCTCAAAACAATGCCTTTA 60.612 43.478 0.00 0.00 0.00 1.85
61 62 2.863704 GCGCTCTCAAAACAATGCCTTT 60.864 45.455 0.00 0.00 0.00 3.11
62 63 1.336240 GCGCTCTCAAAACAATGCCTT 60.336 47.619 0.00 0.00 0.00 4.35
63 64 0.242017 GCGCTCTCAAAACAATGCCT 59.758 50.000 0.00 0.00 0.00 4.75
64 65 1.067199 CGCGCTCTCAAAACAATGCC 61.067 55.000 5.56 0.00 0.00 4.40
65 66 0.110238 TCGCGCTCTCAAAACAATGC 60.110 50.000 5.56 0.00 0.00 3.56
66 67 2.314561 TTCGCGCTCTCAAAACAATG 57.685 45.000 5.56 0.00 0.00 2.82
67 68 2.744202 AGATTCGCGCTCTCAAAACAAT 59.256 40.909 5.56 0.00 0.00 2.71
68 69 2.143122 AGATTCGCGCTCTCAAAACAA 58.857 42.857 5.56 0.00 0.00 2.83
69 70 1.795768 AGATTCGCGCTCTCAAAACA 58.204 45.000 5.56 0.00 0.00 2.83
70 71 2.413453 AGAAGATTCGCGCTCTCAAAAC 59.587 45.455 5.56 0.00 0.00 2.43
71 72 2.668457 GAGAAGATTCGCGCTCTCAAAA 59.332 45.455 15.02 0.00 0.00 2.44
72 73 2.263077 GAGAAGATTCGCGCTCTCAAA 58.737 47.619 15.02 0.00 0.00 2.69
73 74 1.469940 GGAGAAGATTCGCGCTCTCAA 60.470 52.381 19.77 2.97 0.00 3.02
74 75 0.101399 GGAGAAGATTCGCGCTCTCA 59.899 55.000 19.77 0.00 0.00 3.27
75 76 0.101399 TGGAGAAGATTCGCGCTCTC 59.899 55.000 12.32 12.32 0.00 3.20
76 77 0.102120 CTGGAGAAGATTCGCGCTCT 59.898 55.000 5.56 2.72 0.00 4.09
77 78 0.873743 CCTGGAGAAGATTCGCGCTC 60.874 60.000 5.56 0.02 0.00 5.03
78 79 1.142748 CCTGGAGAAGATTCGCGCT 59.857 57.895 5.56 0.00 0.00 5.92
79 80 0.249657 ATCCTGGAGAAGATTCGCGC 60.250 55.000 0.00 0.00 0.00 6.86
80 81 1.067669 TCATCCTGGAGAAGATTCGCG 59.932 52.381 0.00 0.00 0.00 5.87
81 82 2.869192 GTTCATCCTGGAGAAGATTCGC 59.131 50.000 1.52 0.00 0.00 4.70
82 83 3.868077 GTGTTCATCCTGGAGAAGATTCG 59.132 47.826 1.52 0.00 0.00 3.34
83 84 4.080638 AGGTGTTCATCCTGGAGAAGATTC 60.081 45.833 1.52 3.00 33.62 2.52
84 85 3.848975 AGGTGTTCATCCTGGAGAAGATT 59.151 43.478 1.52 0.00 33.62 2.40
85 86 3.458831 AGGTGTTCATCCTGGAGAAGAT 58.541 45.455 1.52 0.00 33.62 2.40
86 87 2.907892 AGGTGTTCATCCTGGAGAAGA 58.092 47.619 1.52 2.42 33.62 2.87
87 88 4.467795 TCTTAGGTGTTCATCCTGGAGAAG 59.532 45.833 1.52 0.00 36.60 2.85
88 89 4.425772 TCTTAGGTGTTCATCCTGGAGAA 58.574 43.478 1.52 3.67 36.60 2.87
89 90 4.061131 TCTTAGGTGTTCATCCTGGAGA 57.939 45.455 1.52 0.00 36.60 3.71
90 91 4.653341 AGATCTTAGGTGTTCATCCTGGAG 59.347 45.833 1.52 0.00 36.60 3.86
91 92 4.624913 AGATCTTAGGTGTTCATCCTGGA 58.375 43.478 0.00 0.00 36.60 3.86
92 93 5.011533 CCTAGATCTTAGGTGTTCATCCTGG 59.988 48.000 0.00 0.00 36.60 4.45
93 94 5.835819 TCCTAGATCTTAGGTGTTCATCCTG 59.164 44.000 0.00 0.00 36.60 3.86
94 95 6.031964 TCCTAGATCTTAGGTGTTCATCCT 57.968 41.667 0.00 0.00 38.91 3.24
95 96 6.495181 TGATCCTAGATCTTAGGTGTTCATCC 59.505 42.308 0.00 0.00 36.16 3.51
96 97 7.309744 CCTGATCCTAGATCTTAGGTGTTCATC 60.310 44.444 0.00 5.50 36.16 2.92
97 98 6.496565 CCTGATCCTAGATCTTAGGTGTTCAT 59.503 42.308 0.00 0.00 36.16 2.57
98 99 5.835819 CCTGATCCTAGATCTTAGGTGTTCA 59.164 44.000 0.00 9.66 36.16 3.18
99 100 5.279256 GCCTGATCCTAGATCTTAGGTGTTC 60.279 48.000 0.00 6.22 36.16 3.18
100 101 4.591072 GCCTGATCCTAGATCTTAGGTGTT 59.409 45.833 0.00 0.00 36.16 3.32
101 102 4.156477 GCCTGATCCTAGATCTTAGGTGT 58.844 47.826 0.00 0.44 36.16 4.16
102 103 3.192422 CGCCTGATCCTAGATCTTAGGTG 59.808 52.174 0.00 9.94 36.16 4.00
103 104 3.074687 TCGCCTGATCCTAGATCTTAGGT 59.925 47.826 0.00 0.00 36.16 3.08
104 105 3.691575 TCGCCTGATCCTAGATCTTAGG 58.308 50.000 0.00 6.23 36.06 2.69
105 106 4.946772 TCATCGCCTGATCCTAGATCTTAG 59.053 45.833 0.00 0.00 30.49 2.18
106 107 4.702612 GTCATCGCCTGATCCTAGATCTTA 59.297 45.833 0.00 0.00 35.97 2.10
107 108 3.509575 GTCATCGCCTGATCCTAGATCTT 59.490 47.826 0.00 0.00 35.97 2.40
108 109 3.088532 GTCATCGCCTGATCCTAGATCT 58.911 50.000 0.00 0.00 35.97 2.75
109 110 2.159448 CGTCATCGCCTGATCCTAGATC 60.159 54.545 0.00 0.00 35.97 2.75
110 111 1.815613 CGTCATCGCCTGATCCTAGAT 59.184 52.381 0.00 0.00 35.97 1.98
111 112 1.239347 CGTCATCGCCTGATCCTAGA 58.761 55.000 0.00 0.00 35.97 2.43
112 113 0.242286 CCGTCATCGCCTGATCCTAG 59.758 60.000 0.00 0.00 35.97 3.02
113 114 0.467474 ACCGTCATCGCCTGATCCTA 60.467 55.000 0.00 0.00 35.97 2.94
114 115 1.758514 ACCGTCATCGCCTGATCCT 60.759 57.895 0.00 0.00 35.97 3.24
115 116 1.592669 CACCGTCATCGCCTGATCC 60.593 63.158 0.00 0.00 35.97 3.36
116 117 1.592669 CCACCGTCATCGCCTGATC 60.593 63.158 0.00 0.00 35.97 2.92
117 118 1.899437 AACCACCGTCATCGCCTGAT 61.899 55.000 0.00 0.00 35.97 2.90
118 119 2.501223 GAACCACCGTCATCGCCTGA 62.501 60.000 0.00 0.00 35.54 3.86
119 120 2.047274 AACCACCGTCATCGCCTG 60.047 61.111 0.00 0.00 35.54 4.85
120 121 2.264794 GAACCACCGTCATCGCCT 59.735 61.111 0.00 0.00 35.54 5.52
121 122 2.100631 CAGAACCACCGTCATCGCC 61.101 63.158 0.00 0.00 35.54 5.54
122 123 2.740714 GCAGAACCACCGTCATCGC 61.741 63.158 0.00 0.00 35.54 4.58
123 124 1.374125 TGCAGAACCACCGTCATCG 60.374 57.895 0.00 0.00 0.00 3.84
124 125 2.162716 GTGCAGAACCACCGTCATC 58.837 57.895 0.00 0.00 0.00 2.92
125 126 4.379174 GTGCAGAACCACCGTCAT 57.621 55.556 0.00 0.00 0.00 3.06
133 134 0.591659 GAAGGAAACGGTGCAGAACC 59.408 55.000 0.00 0.00 46.60 3.62
134 135 1.594331 AGAAGGAAACGGTGCAGAAC 58.406 50.000 0.00 0.00 0.00 3.01
135 136 1.946768 CAAGAAGGAAACGGTGCAGAA 59.053 47.619 0.00 0.00 0.00 3.02
136 137 1.593196 CAAGAAGGAAACGGTGCAGA 58.407 50.000 0.00 0.00 0.00 4.26
137 138 0.593128 CCAAGAAGGAAACGGTGCAG 59.407 55.000 0.00 0.00 41.22 4.41
138 139 0.181587 TCCAAGAAGGAAACGGTGCA 59.818 50.000 0.00 0.00 45.65 4.57
139 140 3.015516 TCCAAGAAGGAAACGGTGC 57.984 52.632 0.00 0.00 45.65 5.01
148 149 3.990318 AAAACGAAGCTTCCAAGAAGG 57.010 42.857 20.62 7.26 39.47 3.46
149 150 4.755123 TCCTAAAACGAAGCTTCCAAGAAG 59.245 41.667 20.62 12.22 0.00 2.85
150 151 4.710324 TCCTAAAACGAAGCTTCCAAGAA 58.290 39.130 20.62 3.35 0.00 2.52
151 152 4.039973 TCTCCTAAAACGAAGCTTCCAAGA 59.960 41.667 20.62 8.75 0.00 3.02
152 153 4.315803 TCTCCTAAAACGAAGCTTCCAAG 58.684 43.478 20.62 9.43 0.00 3.61
153 154 4.345859 TCTCCTAAAACGAAGCTTCCAA 57.654 40.909 20.62 1.26 0.00 3.53
154 155 4.345859 TTCTCCTAAAACGAAGCTTCCA 57.654 40.909 20.62 0.56 0.00 3.53
155 156 5.881777 AATTCTCCTAAAACGAAGCTTCC 57.118 39.130 20.62 3.48 0.00 3.46
156 157 6.817140 TCCTAATTCTCCTAAAACGAAGCTTC 59.183 38.462 16.84 16.84 0.00 3.86
157 158 6.708285 TCCTAATTCTCCTAAAACGAAGCTT 58.292 36.000 0.00 0.00 0.00 3.74
158 159 6.295719 TCCTAATTCTCCTAAAACGAAGCT 57.704 37.500 0.00 0.00 0.00 3.74
159 160 7.555306 AATCCTAATTCTCCTAAAACGAAGC 57.445 36.000 0.00 0.00 0.00 3.86
160 161 8.328864 CGAAATCCTAATTCTCCTAAAACGAAG 58.671 37.037 0.00 0.00 0.00 3.79
161 162 7.279313 CCGAAATCCTAATTCTCCTAAAACGAA 59.721 37.037 0.00 0.00 0.00 3.85
162 163 6.759827 CCGAAATCCTAATTCTCCTAAAACGA 59.240 38.462 0.00 0.00 0.00 3.85
163 164 6.018180 CCCGAAATCCTAATTCTCCTAAAACG 60.018 42.308 0.00 0.00 0.00 3.60
164 165 6.827251 ACCCGAAATCCTAATTCTCCTAAAAC 59.173 38.462 0.00 0.00 0.00 2.43
165 166 6.826741 CACCCGAAATCCTAATTCTCCTAAAA 59.173 38.462 0.00 0.00 0.00 1.52
166 167 6.069847 ACACCCGAAATCCTAATTCTCCTAAA 60.070 38.462 0.00 0.00 0.00 1.85
167 168 5.427481 ACACCCGAAATCCTAATTCTCCTAA 59.573 40.000 0.00 0.00 0.00 2.69
168 169 4.966805 ACACCCGAAATCCTAATTCTCCTA 59.033 41.667 0.00 0.00 0.00 2.94
169 170 3.780850 ACACCCGAAATCCTAATTCTCCT 59.219 43.478 0.00 0.00 0.00 3.69
170 171 4.152284 ACACCCGAAATCCTAATTCTCC 57.848 45.455 0.00 0.00 0.00 3.71
171 172 4.941873 ACAACACCCGAAATCCTAATTCTC 59.058 41.667 0.00 0.00 0.00 2.87
172 173 4.918588 ACAACACCCGAAATCCTAATTCT 58.081 39.130 0.00 0.00 0.00 2.40
173 174 4.941873 AGACAACACCCGAAATCCTAATTC 59.058 41.667 0.00 0.00 0.00 2.17
174 175 4.918588 AGACAACACCCGAAATCCTAATT 58.081 39.130 0.00 0.00 0.00 1.40
175 176 4.569719 AGACAACACCCGAAATCCTAAT 57.430 40.909 0.00 0.00 0.00 1.73
176 177 4.081309 CCTAGACAACACCCGAAATCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
177 178 3.449737 CCTAGACAACACCCGAAATCCTA 59.550 47.826 0.00 0.00 0.00 2.94
178 179 2.236395 CCTAGACAACACCCGAAATCCT 59.764 50.000 0.00 0.00 0.00 3.24
179 180 2.027469 ACCTAGACAACACCCGAAATCC 60.027 50.000 0.00 0.00 0.00 3.01
180 181 3.000727 CACCTAGACAACACCCGAAATC 58.999 50.000 0.00 0.00 0.00 2.17
181 182 2.290071 CCACCTAGACAACACCCGAAAT 60.290 50.000 0.00 0.00 0.00 2.17
182 183 1.071071 CCACCTAGACAACACCCGAAA 59.929 52.381 0.00 0.00 0.00 3.46
183 184 0.682852 CCACCTAGACAACACCCGAA 59.317 55.000 0.00 0.00 0.00 4.30
184 185 0.470456 ACCACCTAGACAACACCCGA 60.470 55.000 0.00 0.00 0.00 5.14
185 186 0.320421 CACCACCTAGACAACACCCG 60.320 60.000 0.00 0.00 0.00 5.28
186 187 0.036306 CCACCACCTAGACAACACCC 59.964 60.000 0.00 0.00 0.00 4.61
187 188 0.763035 ACCACCACCTAGACAACACC 59.237 55.000 0.00 0.00 0.00 4.16
188 189 2.490991 GAACCACCACCTAGACAACAC 58.509 52.381 0.00 0.00 0.00 3.32
189 190 1.069513 CGAACCACCACCTAGACAACA 59.930 52.381 0.00 0.00 0.00 3.33
190 191 1.069668 ACGAACCACCACCTAGACAAC 59.930 52.381 0.00 0.00 0.00 3.32
191 192 1.069513 CACGAACCACCACCTAGACAA 59.930 52.381 0.00 0.00 0.00 3.18
192 193 0.677288 CACGAACCACCACCTAGACA 59.323 55.000 0.00 0.00 0.00 3.41
193 194 0.669625 GCACGAACCACCACCTAGAC 60.670 60.000 0.00 0.00 0.00 2.59
194 195 0.830444 AGCACGAACCACCACCTAGA 60.830 55.000 0.00 0.00 0.00 2.43
195 196 0.670546 CAGCACGAACCACCACCTAG 60.671 60.000 0.00 0.00 0.00 3.02
196 197 1.369692 CAGCACGAACCACCACCTA 59.630 57.895 0.00 0.00 0.00 3.08
197 198 2.111043 CAGCACGAACCACCACCT 59.889 61.111 0.00 0.00 0.00 4.00
198 199 3.660111 GCAGCACGAACCACCACC 61.660 66.667 0.00 0.00 0.00 4.61
199 200 2.896801 CTGCAGCACGAACCACCAC 61.897 63.158 0.00 0.00 0.00 4.16
200 201 2.591429 CTGCAGCACGAACCACCA 60.591 61.111 0.00 0.00 0.00 4.17
201 202 4.030452 GCTGCAGCACGAACCACC 62.030 66.667 33.36 0.00 41.59 4.61
202 203 1.667830 TAGCTGCAGCACGAACCAC 60.668 57.895 38.24 7.79 45.16 4.16
203 204 1.667830 GTAGCTGCAGCACGAACCA 60.668 57.895 38.24 12.61 45.16 3.67
204 205 2.730672 CGTAGCTGCAGCACGAACC 61.731 63.158 37.67 21.45 43.15 3.62
205 206 1.678269 CTCGTAGCTGCAGCACGAAC 61.678 60.000 39.33 30.06 45.78 3.95
206 207 1.444383 CTCGTAGCTGCAGCACGAA 60.444 57.895 39.33 30.10 45.78 3.85
207 208 2.179267 CTCGTAGCTGCAGCACGA 59.821 61.111 38.62 38.62 45.05 4.35
208 209 2.819117 TTCCTCGTAGCTGCAGCACG 62.819 60.000 36.30 36.30 45.16 5.34
209 210 0.460987 ATTCCTCGTAGCTGCAGCAC 60.461 55.000 38.24 29.63 45.16 4.40
210 211 0.250234 AATTCCTCGTAGCTGCAGCA 59.750 50.000 38.24 22.31 45.16 4.41
211 212 0.654683 CAATTCCTCGTAGCTGCAGC 59.345 55.000 31.53 31.53 42.49 5.25
212 213 2.299993 TCAATTCCTCGTAGCTGCAG 57.700 50.000 10.11 10.11 0.00 4.41
213 214 2.799562 CGATCAATTCCTCGTAGCTGCA 60.800 50.000 1.02 0.00 0.00 4.41
214 215 1.789464 CGATCAATTCCTCGTAGCTGC 59.211 52.381 0.00 0.00 0.00 5.25
215 216 1.789464 GCGATCAATTCCTCGTAGCTG 59.211 52.381 0.00 0.00 37.23 4.24
216 217 1.683917 AGCGATCAATTCCTCGTAGCT 59.316 47.619 7.72 0.00 37.23 3.32
217 218 1.789464 CAGCGATCAATTCCTCGTAGC 59.211 52.381 7.72 0.00 37.23 3.58
218 219 1.789464 GCAGCGATCAATTCCTCGTAG 59.211 52.381 7.72 3.20 37.23 3.51
219 220 1.409064 AGCAGCGATCAATTCCTCGTA 59.591 47.619 7.72 0.00 37.23 3.43
220 221 0.176680 AGCAGCGATCAATTCCTCGT 59.823 50.000 7.72 0.00 37.23 4.18
221 222 0.580578 CAGCAGCGATCAATTCCTCG 59.419 55.000 0.00 2.54 37.92 4.63
222 223 1.661341 ACAGCAGCGATCAATTCCTC 58.339 50.000 0.00 0.00 0.00 3.71
223 224 2.484417 CCTACAGCAGCGATCAATTCCT 60.484 50.000 0.00 0.00 0.00 3.36
224 225 1.869767 CCTACAGCAGCGATCAATTCC 59.130 52.381 0.00 0.00 0.00 3.01
225 226 2.826428 TCCTACAGCAGCGATCAATTC 58.174 47.619 0.00 0.00 0.00 2.17
226 227 2.988010 TCCTACAGCAGCGATCAATT 57.012 45.000 0.00 0.00 0.00 2.32
227 228 2.366590 TGATCCTACAGCAGCGATCAAT 59.633 45.455 7.29 0.00 37.70 2.57
228 229 1.756538 TGATCCTACAGCAGCGATCAA 59.243 47.619 7.29 0.00 37.70 2.57
229 230 1.402787 TGATCCTACAGCAGCGATCA 58.597 50.000 5.97 5.97 38.02 2.92
230 231 2.739885 ATGATCCTACAGCAGCGATC 57.260 50.000 0.00 1.37 34.25 3.69
231 232 2.632028 AGAATGATCCTACAGCAGCGAT 59.368 45.455 0.00 0.00 0.00 4.58
232 233 2.034878 AGAATGATCCTACAGCAGCGA 58.965 47.619 0.00 0.00 0.00 4.93
233 234 2.522836 AGAATGATCCTACAGCAGCG 57.477 50.000 0.00 0.00 0.00 5.18
234 235 5.356470 AGAAAAAGAATGATCCTACAGCAGC 59.644 40.000 0.00 0.00 0.00 5.25
235 236 6.998968 AGAAAAAGAATGATCCTACAGCAG 57.001 37.500 0.00 0.00 0.00 4.24
236 237 7.765695 AAAGAAAAAGAATGATCCTACAGCA 57.234 32.000 0.00 0.00 0.00 4.41
237 238 8.518702 AGAAAAGAAAAAGAATGATCCTACAGC 58.481 33.333 0.00 0.00 0.00 4.40
270 271 5.293079 GCACACAGCCAAAAGACAATAAAAA 59.707 36.000 0.00 0.00 37.23 1.94
271 272 4.808364 GCACACAGCCAAAAGACAATAAAA 59.192 37.500 0.00 0.00 37.23 1.52
272 273 4.367450 GCACACAGCCAAAAGACAATAAA 58.633 39.130 0.00 0.00 37.23 1.40
273 274 3.549827 CGCACACAGCCAAAAGACAATAA 60.550 43.478 0.00 0.00 41.38 1.40
274 275 2.031245 CGCACACAGCCAAAAGACAATA 60.031 45.455 0.00 0.00 41.38 1.90
275 276 1.269206 CGCACACAGCCAAAAGACAAT 60.269 47.619 0.00 0.00 41.38 2.71
276 277 0.100325 CGCACACAGCCAAAAGACAA 59.900 50.000 0.00 0.00 41.38 3.18
277 278 1.029408 ACGCACACAGCCAAAAGACA 61.029 50.000 0.00 0.00 41.38 3.41
278 279 0.100503 AACGCACACAGCCAAAAGAC 59.899 50.000 0.00 0.00 41.38 3.01
279 280 0.814457 AAACGCACACAGCCAAAAGA 59.186 45.000 0.00 0.00 41.38 2.52
280 281 0.922717 CAAACGCACACAGCCAAAAG 59.077 50.000 0.00 0.00 41.38 2.27
281 282 0.244994 ACAAACGCACACAGCCAAAA 59.755 45.000 0.00 0.00 41.38 2.44
282 283 1.095600 TACAAACGCACACAGCCAAA 58.904 45.000 0.00 0.00 41.38 3.28
283 284 1.095600 TTACAAACGCACACAGCCAA 58.904 45.000 0.00 0.00 41.38 4.52
284 285 1.001924 CATTACAAACGCACACAGCCA 60.002 47.619 0.00 0.00 41.38 4.75
285 286 1.001815 ACATTACAAACGCACACAGCC 60.002 47.619 0.00 0.00 41.38 4.85
286 287 2.032030 AGACATTACAAACGCACACAGC 60.032 45.455 0.00 0.00 40.87 4.40
287 288 3.878086 AGACATTACAAACGCACACAG 57.122 42.857 0.00 0.00 0.00 3.66
288 289 4.624336 AAAGACATTACAAACGCACACA 57.376 36.364 0.00 0.00 0.00 3.72
289 290 4.605594 CGTAAAGACATTACAAACGCACAC 59.394 41.667 1.89 0.00 43.43 3.82
290 291 4.507021 TCGTAAAGACATTACAAACGCACA 59.493 37.500 1.89 0.00 43.43 4.57
291 292 5.009048 TCGTAAAGACATTACAAACGCAC 57.991 39.130 1.89 0.00 43.43 5.34
292 293 5.849357 ATCGTAAAGACATTACAAACGCA 57.151 34.783 1.89 0.00 43.43 5.24
293 294 7.097570 GCAATATCGTAAAGACATTACAAACGC 60.098 37.037 1.89 0.00 43.43 4.84
294 295 7.108309 CGCAATATCGTAAAGACATTACAAACG 59.892 37.037 1.89 0.00 43.43 3.60
295 296 7.901377 ACGCAATATCGTAAAGACATTACAAAC 59.099 33.333 1.89 0.00 43.43 2.93
296 297 7.966111 ACGCAATATCGTAAAGACATTACAAA 58.034 30.769 1.89 0.00 43.43 2.83
297 298 7.528481 ACGCAATATCGTAAAGACATTACAA 57.472 32.000 1.89 0.00 43.43 2.41
298 299 7.063662 ACAACGCAATATCGTAAAGACATTACA 59.936 33.333 1.89 0.00 43.43 2.41
299 300 7.396419 ACAACGCAATATCGTAAAGACATTAC 58.604 34.615 0.00 0.00 42.46 1.89
300 301 7.528481 ACAACGCAATATCGTAAAGACATTA 57.472 32.000 0.00 0.00 42.46 1.90
301 302 6.417191 ACAACGCAATATCGTAAAGACATT 57.583 33.333 0.00 0.00 42.46 2.71
302 303 6.247903 CAACAACGCAATATCGTAAAGACAT 58.752 36.000 0.00 0.00 42.46 3.06
303 304 5.613812 CAACAACGCAATATCGTAAAGACA 58.386 37.500 0.00 0.00 42.46 3.41
304 305 4.490890 GCAACAACGCAATATCGTAAAGAC 59.509 41.667 0.00 0.00 42.46 3.01
305 306 4.152580 TGCAACAACGCAATATCGTAAAGA 59.847 37.500 0.00 0.00 42.46 2.52
306 307 4.399112 TGCAACAACGCAATATCGTAAAG 58.601 39.130 0.00 0.00 42.46 1.85
307 308 4.152580 TCTGCAACAACGCAATATCGTAAA 59.847 37.500 0.00 0.00 42.45 2.01
308 309 3.680458 TCTGCAACAACGCAATATCGTAA 59.320 39.130 0.00 0.00 42.45 3.18
309 310 3.254892 TCTGCAACAACGCAATATCGTA 58.745 40.909 0.00 0.00 42.45 3.43
310 311 2.073056 TCTGCAACAACGCAATATCGT 58.927 42.857 0.00 0.00 42.45 3.73
311 312 2.348362 TCTCTGCAACAACGCAATATCG 59.652 45.455 0.00 0.00 42.45 2.92
312 313 3.485877 GGTCTCTGCAACAACGCAATATC 60.486 47.826 0.00 0.00 42.45 1.63
313 314 2.420022 GGTCTCTGCAACAACGCAATAT 59.580 45.455 0.00 0.00 42.45 1.28
314 315 1.804151 GGTCTCTGCAACAACGCAATA 59.196 47.619 0.00 0.00 42.45 1.90
315 316 0.593128 GGTCTCTGCAACAACGCAAT 59.407 50.000 0.00 0.00 42.45 3.56
316 317 1.771073 CGGTCTCTGCAACAACGCAA 61.771 55.000 0.00 0.00 42.45 4.85
317 318 2.243957 CGGTCTCTGCAACAACGCA 61.244 57.895 0.00 0.00 40.32 5.24
318 319 2.551270 CGGTCTCTGCAACAACGC 59.449 61.111 0.00 0.00 0.00 4.84
319 320 2.317609 CCCGGTCTCTGCAACAACG 61.318 63.158 0.00 0.00 0.00 4.10
320 321 1.227853 ACCCGGTCTCTGCAACAAC 60.228 57.895 0.00 0.00 0.00 3.32
321 322 1.227823 CACCCGGTCTCTGCAACAA 60.228 57.895 0.00 0.00 0.00 2.83
322 323 1.116536 TACACCCGGTCTCTGCAACA 61.117 55.000 0.00 0.00 0.00 3.33
323 324 0.034337 TTACACCCGGTCTCTGCAAC 59.966 55.000 0.00 0.00 0.00 4.17
324 325 0.981183 ATTACACCCGGTCTCTGCAA 59.019 50.000 0.00 0.00 0.00 4.08
325 326 0.981183 AATTACACCCGGTCTCTGCA 59.019 50.000 0.00 0.00 0.00 4.41
326 327 1.369625 CAATTACACCCGGTCTCTGC 58.630 55.000 0.00 0.00 0.00 4.26
327 328 1.278127 ACCAATTACACCCGGTCTCTG 59.722 52.381 0.00 0.00 0.00 3.35
328 329 1.652947 ACCAATTACACCCGGTCTCT 58.347 50.000 0.00 0.00 0.00 3.10
329 330 3.387050 AGATACCAATTACACCCGGTCTC 59.613 47.826 0.00 0.00 32.81 3.36
330 331 3.381335 AGATACCAATTACACCCGGTCT 58.619 45.455 0.00 0.00 32.81 3.85
331 332 3.493873 GGAGATACCAATTACACCCGGTC 60.494 52.174 0.00 0.00 38.79 4.79
332 333 2.436911 GGAGATACCAATTACACCCGGT 59.563 50.000 0.00 0.00 38.79 5.28
333 334 2.547218 CGGAGATACCAATTACACCCGG 60.547 54.545 0.00 0.00 38.90 5.73
334 335 2.750948 CGGAGATACCAATTACACCCG 58.249 52.381 0.00 0.00 38.90 5.28
335 336 2.104281 AGCGGAGATACCAATTACACCC 59.896 50.000 0.00 0.00 38.90 4.61
336 337 3.470645 AGCGGAGATACCAATTACACC 57.529 47.619 0.00 0.00 38.90 4.16
337 338 8.773404 AAATATAGCGGAGATACCAATTACAC 57.227 34.615 0.00 0.00 38.90 2.90
381 382 7.496263 ACAAGTTACACAACCAAACAACTTTTT 59.504 29.630 0.00 0.00 34.82 1.94
382 383 6.987404 ACAAGTTACACAACCAAACAACTTTT 59.013 30.769 0.00 0.00 34.82 2.27
383 384 6.517605 ACAAGTTACACAACCAAACAACTTT 58.482 32.000 0.00 0.00 34.82 2.66
384 385 6.091718 ACAAGTTACACAACCAAACAACTT 57.908 33.333 0.00 0.00 36.84 2.66
385 386 5.715434 ACAAGTTACACAACCAAACAACT 57.285 34.783 0.00 0.00 35.05 3.16
386 387 6.201234 ACAAACAAGTTACACAACCAAACAAC 59.799 34.615 0.00 0.00 35.05 3.32
387 388 6.201044 CACAAACAAGTTACACAACCAAACAA 59.799 34.615 0.00 0.00 35.05 2.83
388 389 5.692204 CACAAACAAGTTACACAACCAAACA 59.308 36.000 0.00 0.00 35.05 2.83
389 390 5.921408 TCACAAACAAGTTACACAACCAAAC 59.079 36.000 0.00 0.00 35.05 2.93
390 391 6.085555 TCACAAACAAGTTACACAACCAAA 57.914 33.333 0.00 0.00 35.05 3.28
391 392 5.707242 TCACAAACAAGTTACACAACCAA 57.293 34.783 0.00 0.00 35.05 3.67
392 393 5.393569 CCATCACAAACAAGTTACACAACCA 60.394 40.000 0.00 0.00 35.05 3.67
393 394 5.040635 CCATCACAAACAAGTTACACAACC 58.959 41.667 0.00 0.00 35.05 3.77
394 395 4.502645 GCCATCACAAACAAGTTACACAAC 59.497 41.667 0.00 0.00 34.67 3.32
395 396 4.158579 TGCCATCACAAACAAGTTACACAA 59.841 37.500 0.00 0.00 0.00 3.33
396 397 3.696548 TGCCATCACAAACAAGTTACACA 59.303 39.130 0.00 0.00 0.00 3.72
397 398 4.300189 TGCCATCACAAACAAGTTACAC 57.700 40.909 0.00 0.00 0.00 2.90
398 399 6.641169 TTATGCCATCACAAACAAGTTACA 57.359 33.333 0.00 0.00 0.00 2.41
399 400 6.920758 TGTTTATGCCATCACAAACAAGTTAC 59.079 34.615 2.54 0.00 43.97 2.50
409 410 6.990798 TCAGAAAAATGTTTATGCCATCACA 58.009 32.000 0.00 0.00 36.17 3.58
442 443 8.989980 GTGTGTTTAGGGCATCTCTTTATATAC 58.010 37.037 0.00 0.00 0.00 1.47
494 499 0.470341 GGGCTAGCTTCTCGGGAAAT 59.530 55.000 15.72 0.00 0.00 2.17
556 561 0.552848 AGGGCCAGAGAGAGAGAGAG 59.447 60.000 6.18 0.00 0.00 3.20
560 565 0.552848 AGAGAGGGCCAGAGAGAGAG 59.447 60.000 6.18 0.00 0.00 3.20
562 567 0.552848 AGAGAGAGGGCCAGAGAGAG 59.447 60.000 6.18 0.00 0.00 3.20
566 571 0.552848 AGAGAGAGAGAGGGCCAGAG 59.447 60.000 6.18 0.00 0.00 3.35
568 573 1.402787 GAAGAGAGAGAGAGGGCCAG 58.597 60.000 6.18 0.00 0.00 4.85
569 574 0.032615 GGAAGAGAGAGAGAGGGCCA 60.033 60.000 6.18 0.00 0.00 5.36
570 575 0.032615 TGGAAGAGAGAGAGAGGGCC 60.033 60.000 0.00 0.00 0.00 5.80
571 576 2.086610 ATGGAAGAGAGAGAGAGGGC 57.913 55.000 0.00 0.00 0.00 5.19
572 577 5.434182 AAAAATGGAAGAGAGAGAGAGGG 57.566 43.478 0.00 0.00 0.00 4.30
598 617 1.006758 CCACTACTACCCCTCACCAGA 59.993 57.143 0.00 0.00 0.00 3.86
746 769 3.044235 TGGAGTATGATATTGCGGCAG 57.956 47.619 1.67 0.00 0.00 4.85
937 963 4.555262 CTCTCTCTCGTTTCTCTTGCTTT 58.445 43.478 0.00 0.00 0.00 3.51
938 964 3.613910 GCTCTCTCTCGTTTCTCTTGCTT 60.614 47.826 0.00 0.00 0.00 3.91
1047 1073 4.638421 TGATGGAAATCACGGGTATTGAAC 59.362 41.667 0.00 0.00 0.00 3.18
1236 1262 1.045350 TCTCGCCTCCATCCTGAAGG 61.045 60.000 0.00 0.00 0.00 3.46
1239 1265 1.667154 CGTTCTCGCCTCCATCCTGA 61.667 60.000 0.00 0.00 0.00 3.86
1344 1370 3.371063 ATGACGTGCGTCCGGAGT 61.371 61.111 19.99 0.00 43.97 3.85
1883 1909 2.048603 GTGCCTGGGTTCCATCTGC 61.049 63.158 0.00 0.00 30.82 4.26
2125 2156 6.798959 GCAAAATCAGTTATGAGACACAAGAC 59.201 38.462 0.00 0.00 39.29 3.01
2292 2324 3.256631 ACCCAAGTTGACAGAATTCATGC 59.743 43.478 8.44 0.00 0.00 4.06
2332 2364 7.718272 ATTCATGTGTTTTTGAAATCCTGTG 57.282 32.000 0.00 0.00 35.63 3.66
2333 2365 8.206189 AGAATTCATGTGTTTTTGAAATCCTGT 58.794 29.630 8.44 0.00 33.97 4.00
2345 2377 7.233348 ACCCAAGTTGATAGAATTCATGTGTTT 59.767 33.333 8.44 0.00 0.00 2.83
2400 2432 5.732633 TGGCCATGTTTATCAGGATTTTTG 58.267 37.500 0.00 0.00 0.00 2.44
2485 2517 6.576551 TTTTTATGCACGAAAAACAAGACC 57.423 33.333 14.18 0.00 32.29 3.85
2614 2646 9.926158 TTTGTGATAGTACAATTCATGCATTTT 57.074 25.926 0.00 0.00 40.00 1.82
2661 2693 5.013183 TCAAAGGAGAAGTAGAGGGGAAAAG 59.987 44.000 0.00 0.00 0.00 2.27
2665 2697 3.838903 GTTCAAAGGAGAAGTAGAGGGGA 59.161 47.826 0.00 0.00 0.00 4.81
2824 2856 5.045797 GGAAAGGAGGGAGTGTACATACTTT 60.046 44.000 0.00 0.56 0.00 2.66
2827 2859 3.181478 CGGAAAGGAGGGAGTGTACATAC 60.181 52.174 0.00 0.00 0.00 2.39
2829 2861 1.831736 CGGAAAGGAGGGAGTGTACAT 59.168 52.381 0.00 0.00 0.00 2.29
2830 2862 1.263356 CGGAAAGGAGGGAGTGTACA 58.737 55.000 0.00 0.00 0.00 2.90
2831 2863 0.535797 CCGGAAAGGAGGGAGTGTAC 59.464 60.000 0.00 0.00 45.00 2.90
2832 2864 0.115745 ACCGGAAAGGAGGGAGTGTA 59.884 55.000 9.46 0.00 45.00 2.90
2833 2865 1.152096 ACCGGAAAGGAGGGAGTGT 60.152 57.895 9.46 0.00 45.00 3.55
2834 2866 1.192146 TGACCGGAAAGGAGGGAGTG 61.192 60.000 9.46 0.00 45.00 3.51
2863 2895 3.323691 GGCCTTGGCCTTTTCTCTAAAAA 59.676 43.478 22.47 0.00 34.26 1.94
2864 2896 2.897326 GGCCTTGGCCTTTTCTCTAAAA 59.103 45.455 22.47 0.00 33.58 1.52
2865 2897 2.525368 GGCCTTGGCCTTTTCTCTAAA 58.475 47.619 22.47 0.00 0.00 1.85
2866 2898 1.272480 GGGCCTTGGCCTTTTCTCTAA 60.272 52.381 27.45 0.00 45.39 2.10
2867 2899 0.331616 GGGCCTTGGCCTTTTCTCTA 59.668 55.000 27.45 0.00 45.39 2.43
2868 2900 1.077445 GGGCCTTGGCCTTTTCTCT 59.923 57.895 27.45 0.00 45.39 3.10
2869 2901 2.343426 CGGGCCTTGGCCTTTTCTC 61.343 63.158 27.45 10.85 46.75 2.87
2870 2902 2.283173 CGGGCCTTGGCCTTTTCT 60.283 61.111 27.45 0.00 46.75 2.52
2871 2903 2.282887 TCGGGCCTTGGCCTTTTC 60.283 61.111 27.45 11.88 46.75 2.29
2872 2904 2.600470 GTCGGGCCTTGGCCTTTT 60.600 61.111 27.45 0.00 46.75 2.27
2873 2905 2.656698 AAAGTCGGGCCTTGGCCTTT 62.657 55.000 27.45 17.72 46.75 3.11
2874 2906 1.785353 TAAAGTCGGGCCTTGGCCTT 61.785 55.000 27.45 16.81 46.75 4.35
2875 2907 1.571773 ATAAAGTCGGGCCTTGGCCT 61.572 55.000 27.45 11.30 46.75 5.19
2876 2908 0.181824 TATAAAGTCGGGCCTTGGCC 59.818 55.000 21.74 21.74 45.38 5.36
2877 2909 1.140252 TCTATAAAGTCGGGCCTTGGC 59.860 52.381 0.84 2.49 0.00 4.52
2878 2910 3.771577 ATCTATAAAGTCGGGCCTTGG 57.228 47.619 0.84 0.00 0.00 3.61
2879 2911 5.179555 GCTTTATCTATAAAGTCGGGCCTTG 59.820 44.000 18.85 0.00 46.78 3.61
2880 2912 5.306394 GCTTTATCTATAAAGTCGGGCCTT 58.694 41.667 18.85 0.00 46.78 4.35
2881 2913 4.262938 GGCTTTATCTATAAAGTCGGGCCT 60.263 45.833 18.85 0.00 46.78 5.19
2882 2914 4.001652 GGCTTTATCTATAAAGTCGGGCC 58.998 47.826 18.85 12.81 46.78 5.80
2906 2938 3.076258 TATCCGTGACGCTGCCTGG 62.076 63.158 0.00 0.00 0.00 4.45
2907 2939 1.878522 GTATCCGTGACGCTGCCTG 60.879 63.158 0.00 0.00 0.00 4.85
2908 2940 2.494918 GTATCCGTGACGCTGCCT 59.505 61.111 0.00 0.00 0.00 4.75
2909 2941 2.585247 GGTATCCGTGACGCTGCC 60.585 66.667 0.00 0.00 0.00 4.85
2910 2942 2.165301 GTGGTATCCGTGACGCTGC 61.165 63.158 0.00 0.00 0.00 5.25
2911 2943 1.214325 TGTGGTATCCGTGACGCTG 59.786 57.895 0.00 0.00 0.00 5.18
2912 2944 3.689414 TGTGGTATCCGTGACGCT 58.311 55.556 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.