Multiple sequence alignment - TraesCS6B01G209000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G209000 chr6B 100.000 3272 0 0 1 3272 274384900 274388171 0.000000e+00 6043.0
1 TraesCS6B01G209000 chr6B 90.385 52 3 2 2762 2813 155759150 155759101 2.110000e-07 67.6
2 TraesCS6B01G209000 chr6B 89.583 48 5 0 3223 3270 343648101 343648148 9.800000e-06 62.1
3 TraesCS6B01G209000 chr6B 89.583 48 5 0 3223 3270 343674783 343674830 9.800000e-06 62.1
4 TraesCS6B01G209000 chr6D 94.209 2124 57 22 721 2816 149882418 149884503 0.000000e+00 3181.0
5 TraesCS6B01G209000 chr6D 91.493 529 32 7 175 700 149881325 149881843 0.000000e+00 715.0
6 TraesCS6B01G209000 chr6D 90.708 226 12 3 2994 3210 149884540 149884765 3.190000e-75 292.0
7 TraesCS6B01G209000 chr6D 95.122 123 5 1 2882 3003 471326599 471326721 3.330000e-45 193.0
8 TraesCS6B01G209000 chr6D 93.077 130 8 1 2877 3005 430998458 430998587 4.310000e-44 189.0
9 TraesCS6B01G209000 chr6D 85.965 57 5 3 2744 2799 82943744 82943798 1.270000e-04 58.4
10 TraesCS6B01G209000 chr6A 95.852 1977 55 9 863 2816 195295478 195293506 0.000000e+00 3171.0
11 TraesCS6B01G209000 chr6A 93.542 480 29 2 175 654 195296291 195295814 0.000000e+00 713.0
12 TraesCS6B01G209000 chr6A 91.667 192 7 4 2994 3177 195293469 195293279 1.160000e-64 257.0
13 TraesCS6B01G209000 chr7D 96.694 121 4 0 2882 3002 610248164 610248284 5.540000e-48 202.0
14 TraesCS6B01G209000 chr7D 100.000 29 0 0 3199 3227 428727638 428727610 2.000000e-03 54.7
15 TraesCS6B01G209000 chr5B 95.868 121 5 0 2882 3002 493651545 493651425 2.580000e-46 196.0
16 TraesCS6B01G209000 chr5B 100.000 30 0 0 3204 3233 71726656 71726627 4.560000e-04 56.5
17 TraesCS6B01G209000 chr5B 100.000 30 0 0 3204 3233 582280575 582280604 4.560000e-04 56.5
18 TraesCS6B01G209000 chr3D 95.868 121 5 0 2883 3003 7308173 7308053 2.580000e-46 196.0
19 TraesCS6B01G209000 chr3D 88.889 45 3 1 2766 2810 535407722 535407764 2.000000e-03 54.7
20 TraesCS6B01G209000 chr5D 95.833 120 5 0 2883 3002 30459188 30459069 9.260000e-46 195.0
21 TraesCS6B01G209000 chr5D 91.176 136 12 0 2882 3017 361510235 361510370 5.580000e-43 185.0
22 TraesCS6B01G209000 chr5D 97.872 47 1 0 3226 3272 296959349 296959395 7.520000e-12 82.4
23 TraesCS6B01G209000 chr5D 100.000 30 0 0 3204 3233 423532529 423532500 4.560000e-04 56.5
24 TraesCS6B01G209000 chr1A 96.581 117 4 0 2884 3000 28628560 28628444 9.260000e-46 195.0
25 TraesCS6B01G209000 chr1A 84.946 93 13 1 752 843 580892825 580892733 3.480000e-15 93.5
26 TraesCS6B01G209000 chr1B 95.041 121 6 0 2882 3002 28559704 28559824 1.200000e-44 191.0
27 TraesCS6B01G209000 chr1B 93.617 47 3 0 3226 3272 374327081 374327035 1.630000e-08 71.3
28 TraesCS6B01G209000 chr1B 83.824 68 5 4 2744 2810 671216855 671216917 3.530000e-05 60.2
29 TraesCS6B01G209000 chr1B 85.965 57 5 3 2744 2799 671219627 671219681 1.270000e-04 58.4
30 TraesCS6B01G209000 chr1B 100.000 30 0 0 3204 3233 407525111 407525082 4.560000e-04 56.5
31 TraesCS6B01G209000 chr1B 96.970 33 0 1 3195 3227 400141670 400141639 2.000000e-03 54.7
32 TraesCS6B01G209000 chr3B 93.617 47 3 0 3225 3271 691492876 691492830 1.630000e-08 71.3
33 TraesCS6B01G209000 chr5A 93.333 45 3 0 2764 2808 244760135 244760091 2.110000e-07 67.6
34 TraesCS6B01G209000 chr4A 93.333 45 3 0 3226 3270 33727913 33727869 2.110000e-07 67.6
35 TraesCS6B01G209000 chr3A 95.238 42 2 0 3226 3267 702559972 702560013 2.110000e-07 67.6
36 TraesCS6B01G209000 chr2A 91.489 47 4 0 3226 3272 585738384 585738430 7.580000e-07 65.8
37 TraesCS6B01G209000 chr7B 93.023 43 3 0 3204 3246 582123434 582123392 2.730000e-06 63.9
38 TraesCS6B01G209000 chr7B 100.000 30 0 0 2769 2798 613835637 613835608 4.560000e-04 56.5
39 TraesCS6B01G209000 chr7A 91.304 46 4 0 3225 3270 727823832 727823787 2.730000e-06 63.9
40 TraesCS6B01G209000 chr2B 100.000 30 0 0 3204 3233 746958176 746958147 4.560000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G209000 chr6B 274384900 274388171 3271 False 6043.000000 6043 100.000000 1 3272 1 chr6B.!!$F1 3271
1 TraesCS6B01G209000 chr6D 149881325 149884765 3440 False 1396.000000 3181 92.136667 175 3210 3 chr6D.!!$F4 3035
2 TraesCS6B01G209000 chr6A 195293279 195296291 3012 True 1380.333333 3171 93.687000 175 3177 3 chr6A.!!$R1 3002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.248743 TGCGCTAGGTACGTATGCAC 60.249 55.0 9.73 7.77 0.00 4.57 F
417 418 0.250901 ACAAAAGCGACCTGGCTCAT 60.251 50.0 0.00 0.00 43.93 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 2490 2.266055 GAGTTGAGGAGGGCACGG 59.734 66.667 0.0 0.0 0.00 4.94 R
2318 3032 0.167470 CAGGATGTCGCAACAAGCAG 59.833 55.000 0.0 0.0 46.13 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.701539 TGATAATTGAGTATTTGTTGCCACT 57.298 32.000 0.00 0.00 0.00 4.00
26 27 8.121305 TGATAATTGAGTATTTGTTGCCACTT 57.879 30.769 0.00 0.00 0.00 3.16
27 28 8.028354 TGATAATTGAGTATTTGTTGCCACTTG 58.972 33.333 0.00 0.00 0.00 3.16
28 29 3.641437 TGAGTATTTGTTGCCACTTGC 57.359 42.857 0.00 0.00 41.77 4.01
39 40 0.529378 GCCACTTGCAGATCTTTGGG 59.471 55.000 0.00 0.00 40.77 4.12
40 41 1.887956 GCCACTTGCAGATCTTTGGGA 60.888 52.381 0.00 0.00 40.77 4.37
41 42 2.089980 CCACTTGCAGATCTTTGGGAG 58.910 52.381 0.00 0.00 0.00 4.30
42 43 2.089980 CACTTGCAGATCTTTGGGAGG 58.910 52.381 0.00 0.00 0.00 4.30
43 44 1.707427 ACTTGCAGATCTTTGGGAGGT 59.293 47.619 0.00 0.00 0.00 3.85
44 45 2.108952 ACTTGCAGATCTTTGGGAGGTT 59.891 45.455 0.00 0.00 0.00 3.50
45 46 2.978156 TGCAGATCTTTGGGAGGTTT 57.022 45.000 0.00 0.00 0.00 3.27
46 47 3.243359 TGCAGATCTTTGGGAGGTTTT 57.757 42.857 0.00 0.00 0.00 2.43
47 48 3.575805 TGCAGATCTTTGGGAGGTTTTT 58.424 40.909 0.00 0.00 0.00 1.94
48 49 4.735369 TGCAGATCTTTGGGAGGTTTTTA 58.265 39.130 0.00 0.00 0.00 1.52
49 50 4.522789 TGCAGATCTTTGGGAGGTTTTTAC 59.477 41.667 0.00 0.00 0.00 2.01
50 51 4.379499 GCAGATCTTTGGGAGGTTTTTACG 60.379 45.833 0.00 0.00 0.00 3.18
51 52 4.156008 CAGATCTTTGGGAGGTTTTTACGG 59.844 45.833 0.00 0.00 0.00 4.02
52 53 2.866351 TCTTTGGGAGGTTTTTACGGG 58.134 47.619 0.00 0.00 0.00 5.28
53 54 2.442502 TCTTTGGGAGGTTTTTACGGGA 59.557 45.455 0.00 0.00 0.00 5.14
54 55 3.074836 TCTTTGGGAGGTTTTTACGGGAT 59.925 43.478 0.00 0.00 0.00 3.85
55 56 3.529216 TTGGGAGGTTTTTACGGGATT 57.471 42.857 0.00 0.00 0.00 3.01
56 57 4.654389 TTGGGAGGTTTTTACGGGATTA 57.346 40.909 0.00 0.00 0.00 1.75
57 58 4.224991 TGGGAGGTTTTTACGGGATTAG 57.775 45.455 0.00 0.00 0.00 1.73
58 59 3.845398 TGGGAGGTTTTTACGGGATTAGA 59.155 43.478 0.00 0.00 0.00 2.10
59 60 4.475747 TGGGAGGTTTTTACGGGATTAGAT 59.524 41.667 0.00 0.00 0.00 1.98
60 61 5.044698 TGGGAGGTTTTTACGGGATTAGATT 60.045 40.000 0.00 0.00 0.00 2.40
61 62 5.298527 GGGAGGTTTTTACGGGATTAGATTG 59.701 44.000 0.00 0.00 0.00 2.67
62 63 5.220989 GGAGGTTTTTACGGGATTAGATTGC 60.221 44.000 0.00 0.00 0.00 3.56
63 64 4.334481 AGGTTTTTACGGGATTAGATTGCG 59.666 41.667 0.00 0.00 0.00 4.85
64 65 3.955771 TTTTACGGGATTAGATTGCGC 57.044 42.857 0.00 0.00 0.00 6.09
65 66 2.902705 TTACGGGATTAGATTGCGCT 57.097 45.000 9.73 0.00 0.00 5.92
66 67 4.325028 TTTACGGGATTAGATTGCGCTA 57.675 40.909 9.73 0.00 0.00 4.26
67 68 2.440539 ACGGGATTAGATTGCGCTAG 57.559 50.000 9.73 0.00 0.00 3.42
68 69 1.000955 ACGGGATTAGATTGCGCTAGG 59.999 52.381 9.73 0.00 0.00 3.02
69 70 1.000955 CGGGATTAGATTGCGCTAGGT 59.999 52.381 9.73 0.00 0.00 3.08
70 71 2.230508 CGGGATTAGATTGCGCTAGGTA 59.769 50.000 9.73 0.00 0.00 3.08
71 72 3.586892 GGGATTAGATTGCGCTAGGTAC 58.413 50.000 9.73 0.00 0.00 3.34
72 73 3.243336 GGATTAGATTGCGCTAGGTACG 58.757 50.000 9.73 0.00 0.00 3.67
73 74 3.305199 GGATTAGATTGCGCTAGGTACGT 60.305 47.826 9.73 0.00 0.00 3.57
74 75 4.083110 GGATTAGATTGCGCTAGGTACGTA 60.083 45.833 9.73 0.00 0.00 3.57
75 76 5.392811 GGATTAGATTGCGCTAGGTACGTAT 60.393 44.000 9.73 0.00 0.00 3.06
76 77 3.284323 AGATTGCGCTAGGTACGTATG 57.716 47.619 9.73 0.00 0.00 2.39
77 78 1.719780 GATTGCGCTAGGTACGTATGC 59.280 52.381 9.73 11.09 0.00 3.14
78 79 0.456628 TTGCGCTAGGTACGTATGCA 59.543 50.000 9.73 14.84 0.00 3.96
79 80 0.248743 TGCGCTAGGTACGTATGCAC 60.249 55.000 9.73 7.77 0.00 4.57
106 107 3.744719 CGAGGTCTGGCGGACGAA 61.745 66.667 19.64 0.00 45.35 3.85
107 108 2.126031 GAGGTCTGGCGGACGAAC 60.126 66.667 19.64 9.86 45.35 3.95
108 109 2.915659 AGGTCTGGCGGACGAACA 60.916 61.111 19.64 0.00 45.35 3.18
109 110 2.029964 GGTCTGGCGGACGAACAA 59.970 61.111 19.64 0.00 45.35 2.83
110 111 1.595929 GGTCTGGCGGACGAACAAA 60.596 57.895 19.64 0.00 45.35 2.83
111 112 1.566018 GGTCTGGCGGACGAACAAAG 61.566 60.000 19.64 0.00 45.35 2.77
112 113 0.878961 GTCTGGCGGACGAACAAAGT 60.879 55.000 11.29 0.00 35.07 2.66
113 114 0.675083 TCTGGCGGACGAACAAAGTA 59.325 50.000 0.00 0.00 0.00 2.24
114 115 1.274167 TCTGGCGGACGAACAAAGTAT 59.726 47.619 0.00 0.00 0.00 2.12
115 116 1.659098 CTGGCGGACGAACAAAGTATC 59.341 52.381 0.00 0.00 0.00 2.24
116 117 0.643820 GGCGGACGAACAAAGTATCG 59.356 55.000 0.00 0.00 44.33 2.92
117 118 1.621107 GCGGACGAACAAAGTATCGA 58.379 50.000 1.84 0.00 41.43 3.59
118 119 1.319669 GCGGACGAACAAAGTATCGAC 59.680 52.381 1.84 0.00 41.43 4.20
119 120 2.587956 CGGACGAACAAAGTATCGACA 58.412 47.619 1.84 0.00 41.43 4.35
120 121 2.981805 CGGACGAACAAAGTATCGACAA 59.018 45.455 1.84 0.00 41.43 3.18
121 122 3.426191 CGGACGAACAAAGTATCGACAAA 59.574 43.478 1.84 0.00 41.43 2.83
122 123 4.084952 CGGACGAACAAAGTATCGACAAAA 60.085 41.667 1.84 0.00 41.43 2.44
123 124 5.135330 GGACGAACAAAGTATCGACAAAAC 58.865 41.667 1.84 0.00 41.43 2.43
124 125 4.754332 ACGAACAAAGTATCGACAAAACG 58.246 39.130 1.84 0.00 41.43 3.60
125 126 4.503734 ACGAACAAAGTATCGACAAAACGA 59.496 37.500 1.84 0.00 46.04 3.85
126 127 5.005586 ACGAACAAAGTATCGACAAAACGAA 59.994 36.000 1.84 0.00 45.16 3.85
127 128 5.332594 CGAACAAAGTATCGACAAAACGAAC 59.667 40.000 0.00 0.00 45.16 3.95
128 129 4.754332 ACAAAGTATCGACAAAACGAACG 58.246 39.130 0.00 0.00 45.16 3.95
129 130 4.503734 ACAAAGTATCGACAAAACGAACGA 59.496 37.500 0.14 0.00 45.16 3.85
130 131 5.005586 ACAAAGTATCGACAAAACGAACGAA 59.994 36.000 0.14 0.00 45.16 3.85
131 132 4.619931 AGTATCGACAAAACGAACGAAC 57.380 40.909 0.14 0.00 45.16 3.95
132 133 2.548497 ATCGACAAAACGAACGAACG 57.452 45.000 0.14 0.00 45.16 3.95
133 134 1.543614 TCGACAAAACGAACGAACGA 58.456 45.000 11.97 0.00 39.34 3.85
134 135 1.252524 TCGACAAAACGAACGAACGAC 59.747 47.619 11.97 0.00 39.34 4.34
135 136 1.007217 CGACAAAACGAACGAACGACA 60.007 47.619 11.97 0.00 37.03 4.35
136 137 2.346924 CGACAAAACGAACGAACGACAT 60.347 45.455 11.97 0.00 37.03 3.06
137 138 3.121729 CGACAAAACGAACGAACGACATA 60.122 43.478 11.97 0.00 37.03 2.29
138 139 4.106288 ACAAAACGAACGAACGACATAC 57.894 40.909 11.97 0.00 37.03 2.39
139 140 3.060339 ACAAAACGAACGAACGACATACC 60.060 43.478 11.97 0.00 37.03 2.73
140 141 1.330306 AACGAACGAACGACATACCG 58.670 50.000 11.97 0.00 37.03 4.02
141 142 0.516877 ACGAACGAACGACATACCGA 59.483 50.000 11.97 0.00 37.03 4.69
142 143 0.903187 CGAACGAACGACATACCGAC 59.097 55.000 0.14 0.00 35.09 4.79
143 144 1.464687 CGAACGAACGACATACCGACT 60.465 52.381 0.14 0.00 35.09 4.18
144 145 2.589014 GAACGAACGACATACCGACTT 58.411 47.619 0.14 0.00 0.00 3.01
145 146 3.724716 CGAACGAACGACATACCGACTTA 60.725 47.826 0.14 0.00 35.09 2.24
146 147 3.122937 ACGAACGACATACCGACTTAC 57.877 47.619 0.14 0.00 0.00 2.34
147 148 2.159517 ACGAACGACATACCGACTTACC 60.160 50.000 0.14 0.00 0.00 2.85
148 149 2.159531 CGAACGACATACCGACTTACCA 60.160 50.000 0.00 0.00 0.00 3.25
149 150 3.488047 CGAACGACATACCGACTTACCAT 60.488 47.826 0.00 0.00 0.00 3.55
150 151 3.705043 ACGACATACCGACTTACCATC 57.295 47.619 0.00 0.00 0.00 3.51
151 152 3.018856 ACGACATACCGACTTACCATCA 58.981 45.455 0.00 0.00 0.00 3.07
152 153 3.181493 ACGACATACCGACTTACCATCAC 60.181 47.826 0.00 0.00 0.00 3.06
153 154 3.066342 CGACATACCGACTTACCATCACT 59.934 47.826 0.00 0.00 0.00 3.41
154 155 4.274214 CGACATACCGACTTACCATCACTA 59.726 45.833 0.00 0.00 0.00 2.74
155 156 5.511234 ACATACCGACTTACCATCACTAC 57.489 43.478 0.00 0.00 0.00 2.73
156 157 4.340381 ACATACCGACTTACCATCACTACC 59.660 45.833 0.00 0.00 0.00 3.18
157 158 1.747355 ACCGACTTACCATCACTACCG 59.253 52.381 0.00 0.00 0.00 4.02
158 159 1.747355 CCGACTTACCATCACTACCGT 59.253 52.381 0.00 0.00 0.00 4.83
159 160 2.945008 CCGACTTACCATCACTACCGTA 59.055 50.000 0.00 0.00 0.00 4.02
160 161 3.003068 CCGACTTACCATCACTACCGTAG 59.997 52.174 3.88 3.88 0.00 3.51
161 162 3.873361 CGACTTACCATCACTACCGTAGA 59.127 47.826 12.66 0.00 0.00 2.59
162 163 4.260538 CGACTTACCATCACTACCGTAGAC 60.261 50.000 12.66 0.00 0.00 2.59
163 164 4.853007 ACTTACCATCACTACCGTAGACT 58.147 43.478 12.66 0.00 0.00 3.24
164 165 5.259632 ACTTACCATCACTACCGTAGACTT 58.740 41.667 12.66 0.00 0.00 3.01
165 166 5.356470 ACTTACCATCACTACCGTAGACTTC 59.644 44.000 12.66 0.00 0.00 3.01
166 167 3.965694 ACCATCACTACCGTAGACTTCT 58.034 45.455 12.66 0.00 0.00 2.85
167 168 4.342359 ACCATCACTACCGTAGACTTCTT 58.658 43.478 12.66 0.00 0.00 2.52
168 169 4.771054 ACCATCACTACCGTAGACTTCTTT 59.229 41.667 12.66 0.00 0.00 2.52
169 170 5.245526 ACCATCACTACCGTAGACTTCTTTT 59.754 40.000 12.66 0.00 0.00 2.27
170 171 6.164176 CCATCACTACCGTAGACTTCTTTTT 58.836 40.000 12.66 0.00 0.00 1.94
212 213 3.606346 CCGAATGCGAACAAAAACCATAC 59.394 43.478 0.00 0.00 40.82 2.39
213 214 4.222886 CGAATGCGAACAAAAACCATACA 58.777 39.130 0.00 0.00 40.82 2.29
225 226 6.127842 ACAAAAACCATACATACATCCGTTCC 60.128 38.462 0.00 0.00 0.00 3.62
287 288 0.662970 CGGGTCAAACCAAATGTGCG 60.663 55.000 0.00 0.00 41.02 5.34
306 307 2.286654 GCGGTCAAAGCAATATCTCAGC 60.287 50.000 0.00 0.00 34.19 4.26
307 308 2.938451 CGGTCAAAGCAATATCTCAGCA 59.062 45.455 0.00 0.00 0.00 4.41
313 314 5.884232 TCAAAGCAATATCTCAGCACTCAAT 59.116 36.000 0.00 0.00 0.00 2.57
348 349 1.214589 GTACATCACGGTCACGGCT 59.785 57.895 0.00 0.00 46.48 5.52
381 382 0.784778 GTTCCGAAGTCGCTTCAGTG 59.215 55.000 16.26 7.16 40.17 3.66
411 412 2.293122 TGGATTTGACAAAAGCGACCTG 59.707 45.455 4.41 0.00 32.32 4.00
417 418 0.250901 ACAAAAGCGACCTGGCTCAT 60.251 50.000 0.00 0.00 43.93 2.90
433 434 2.028294 GCTCATCCATCATCTCACCGAT 60.028 50.000 0.00 0.00 0.00 4.18
438 439 5.126707 TCATCCATCATCTCACCGATATCAG 59.873 44.000 3.12 0.00 0.00 2.90
443 444 3.575687 TCATCTCACCGATATCAGTGCAT 59.424 43.478 13.33 6.01 33.90 3.96
582 583 3.973206 ACGTTGTCACCTAATCATGGA 57.027 42.857 0.00 0.00 0.00 3.41
585 586 5.357257 ACGTTGTCACCTAATCATGGATAC 58.643 41.667 0.00 0.00 0.00 2.24
700 717 6.525629 AGGTGGATGTCGAAATTCTTATAGG 58.474 40.000 0.00 0.00 0.00 2.57
701 718 6.099845 AGGTGGATGTCGAAATTCTTATAGGT 59.900 38.462 0.00 0.00 0.00 3.08
703 720 6.144080 GTGGATGTCGAAATTCTTATAGGTCG 59.856 42.308 0.00 0.00 0.00 4.79
717 763 8.757982 TCTTATAGGTCGGAGTATGTAACTTT 57.242 34.615 0.00 0.00 39.07 2.66
718 764 8.627403 TCTTATAGGTCGGAGTATGTAACTTTG 58.373 37.037 0.00 0.00 39.07 2.77
760 1445 8.096621 TGACAATTACAAATATACTCCCTCCA 57.903 34.615 0.00 0.00 0.00 3.86
855 1542 8.554528 CACTCATTTCAGCCTATGTATAGTTTG 58.445 37.037 0.00 0.00 0.00 2.93
858 1545 9.542462 TCATTTCAGCCTATGTATAGTTTGTAC 57.458 33.333 0.00 0.00 0.00 2.90
860 1547 9.765795 ATTTCAGCCTATGTATAGTTTGTACTC 57.234 33.333 0.00 0.00 35.78 2.59
861 1548 6.967135 TCAGCCTATGTATAGTTTGTACTCG 58.033 40.000 0.00 0.00 35.78 4.18
862 1549 6.544931 TCAGCCTATGTATAGTTTGTACTCGT 59.455 38.462 0.00 0.00 35.78 4.18
906 1609 5.337578 TTTCTTTTGGCAAGCTACTTTGT 57.662 34.783 0.00 0.00 0.00 2.83
962 1665 8.593492 TGAGTATATATAGCTTGCTTGTGTTG 57.407 34.615 0.00 0.00 0.00 3.33
977 1680 1.079750 GTTGGGAGGACGTGAGCTC 60.080 63.158 6.82 6.82 0.00 4.09
1014 1719 1.317431 TACACATGGAGACGTCGGGG 61.317 60.000 10.46 2.53 0.00 5.73
1446 2151 1.063649 TCTATTCTCGTCGTGCGGC 59.936 57.895 0.00 0.00 41.72 6.53
1609 2314 1.112113 GCTCGAGAATGGGACCTACA 58.888 55.000 18.75 0.00 0.00 2.74
1795 2506 2.203788 TCCGTGCCCTCCTCAACT 60.204 61.111 0.00 0.00 0.00 3.16
2149 2863 0.906756 AGTAGGGAAGCTCTGCTGCA 60.907 55.000 0.88 0.88 39.62 4.41
2318 3032 0.539438 TGCATGGTGGAACTGGAACC 60.539 55.000 0.00 0.00 36.74 3.62
2323 3037 0.178990 GGTGGAACTGGAACCTGCTT 60.179 55.000 0.00 0.00 36.74 3.91
2417 3131 6.767423 AACTGAAGTTGAAATCCCAAATTTGG 59.233 34.615 27.46 27.46 41.41 3.28
2445 3159 0.606401 GTGTCACTGACATGTGGGGG 60.606 60.000 14.95 0.00 44.63 5.40
2446 3160 1.675641 GTCACTGACATGTGGGGGC 60.676 63.158 1.15 0.00 38.40 5.80
2690 3422 2.933906 GACACAACACACATATACCCCG 59.066 50.000 0.00 0.00 0.00 5.73
2717 3449 9.013490 CATCCGTTTCATATCAATTCTTGTTTC 57.987 33.333 0.00 0.00 0.00 2.78
2882 3620 3.931907 TCCTCAAATCGGTCATGGAAT 57.068 42.857 0.00 0.00 0.00 3.01
2883 3621 5.567037 ATCCTCAAATCGGTCATGGAATA 57.433 39.130 0.00 0.00 0.00 1.75
2884 3622 4.703897 TCCTCAAATCGGTCATGGAATAC 58.296 43.478 0.00 0.00 0.00 1.89
2885 3623 4.408921 TCCTCAAATCGGTCATGGAATACT 59.591 41.667 0.00 0.00 0.00 2.12
2886 3624 4.752101 CCTCAAATCGGTCATGGAATACTC 59.248 45.833 0.00 0.00 0.00 2.59
2887 3625 4.703897 TCAAATCGGTCATGGAATACTCC 58.296 43.478 0.00 0.00 42.81 3.85
2888 3626 3.771577 AATCGGTCATGGAATACTCCC 57.228 47.619 0.00 0.00 41.64 4.30
2889 3627 2.471815 TCGGTCATGGAATACTCCCT 57.528 50.000 0.00 0.00 41.64 4.20
2890 3628 2.317040 TCGGTCATGGAATACTCCCTC 58.683 52.381 0.00 0.00 41.64 4.30
2891 3629 1.344763 CGGTCATGGAATACTCCCTCC 59.655 57.143 0.00 0.00 41.64 4.30
2892 3630 1.344763 GGTCATGGAATACTCCCTCCG 59.655 57.143 0.00 0.00 41.64 4.63
2893 3631 2.040178 GTCATGGAATACTCCCTCCGT 58.960 52.381 0.00 0.00 41.64 4.69
2894 3632 2.036089 GTCATGGAATACTCCCTCCGTC 59.964 54.545 0.00 0.00 41.64 4.79
2895 3633 1.344763 CATGGAATACTCCCTCCGTCC 59.655 57.143 0.00 0.00 41.64 4.79
2896 3634 0.754217 TGGAATACTCCCTCCGTCCG 60.754 60.000 0.00 0.00 41.64 4.79
2897 3635 1.461911 GGAATACTCCCTCCGTCCGG 61.462 65.000 0.00 0.00 35.42 5.14
2898 3636 0.466922 GAATACTCCCTCCGTCCGGA 60.467 60.000 0.00 0.00 42.90 5.14
2899 3637 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2900 3638 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2901 3639 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2902 3640 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2903 3641 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2904 3642 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2905 3643 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
2906 3644 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
2907 3645 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
2908 3646 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
2909 3647 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
2910 3648 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
2911 3649 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
2912 3650 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
2913 3651 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
2914 3652 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
2915 3653 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
2916 3654 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
2917 3655 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
2918 3656 3.381949 GAAATACTCGTCGGAGGAATGG 58.618 50.000 1.73 0.00 44.93 3.16
2919 3657 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
2920 3658 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
2921 3659 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
2922 3660 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
2923 3661 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
2924 3662 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
2925 3663 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
2926 3664 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
2927 3665 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
2928 3666 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
2929 3667 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
2930 3668 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
2931 3669 6.829298 GTCGGAGGAATGGATGTATCTAGATA 59.171 42.308 8.44 8.44 0.00 1.98
2932 3670 7.504238 GTCGGAGGAATGGATGTATCTAGATAT 59.496 40.741 15.43 1.62 0.00 1.63
2933 3671 8.724310 TCGGAGGAATGGATGTATCTAGATATA 58.276 37.037 15.43 13.22 0.00 0.86
2934 3672 9.527157 CGGAGGAATGGATGTATCTAGATATAT 57.473 37.037 18.82 18.82 0.00 0.86
2974 3712 9.301153 ACATTTATTTTTATGCATTTCTCCGAC 57.699 29.630 3.54 0.00 0.00 4.79
2975 3713 9.299963 CATTTATTTTTATGCATTTCTCCGACA 57.700 29.630 3.54 0.00 0.00 4.35
2976 3714 9.868277 ATTTATTTTTATGCATTTCTCCGACAA 57.132 25.926 3.54 0.00 0.00 3.18
2977 3715 8.909708 TTATTTTTATGCATTTCTCCGACAAG 57.090 30.769 3.54 0.00 0.00 3.16
2978 3716 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
2979 3717 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
2980 3718 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
2981 3719 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
2982 3720 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
2983 3721 5.957842 TGCATTTCTCCGACAAGTATTTT 57.042 34.783 0.00 0.00 0.00 1.82
2984 3722 5.938322 TGCATTTCTCCGACAAGTATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
2985 3723 5.471797 TGCATTTCTCCGACAAGTATTTTCA 59.528 36.000 0.00 0.00 0.00 2.69
2986 3724 6.024049 GCATTTCTCCGACAAGTATTTTCAG 58.976 40.000 0.00 0.00 0.00 3.02
2987 3725 6.128282 GCATTTCTCCGACAAGTATTTTCAGA 60.128 38.462 0.00 0.00 0.00 3.27
2988 3726 6.780706 TTTCTCCGACAAGTATTTTCAGAC 57.219 37.500 0.00 0.00 0.00 3.51
2989 3727 4.482386 TCTCCGACAAGTATTTTCAGACG 58.518 43.478 0.00 0.00 0.00 4.18
2990 3728 3.581755 TCCGACAAGTATTTTCAGACGG 58.418 45.455 0.00 0.00 39.30 4.79
2991 3729 3.256383 TCCGACAAGTATTTTCAGACGGA 59.744 43.478 0.00 0.00 43.35 4.69
2992 3730 3.612860 CCGACAAGTATTTTCAGACGGAG 59.387 47.826 0.00 0.00 40.16 4.63
2993 3731 3.612860 CGACAAGTATTTTCAGACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2994 3732 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2995 3733 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2996 3734 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3097 3843 7.312899 AGCAAAACTAATGTGCCAAGTAATAC 58.687 34.615 0.00 0.00 39.13 1.89
3189 3936 0.459063 AAATAAGGGACGTCGACGCC 60.459 55.000 35.92 32.83 44.43 5.68
3202 3949 1.674441 TCGACGCCCTAGATACAACTG 59.326 52.381 0.00 0.00 0.00 3.16
3203 3950 1.674441 CGACGCCCTAGATACAACTGA 59.326 52.381 0.00 0.00 0.00 3.41
3210 3957 6.374894 ACGCCCTAGATACAACTGATATACTC 59.625 42.308 0.00 0.00 0.00 2.59
3211 3958 6.183360 CGCCCTAGATACAACTGATATACTCC 60.183 46.154 0.00 0.00 0.00 3.85
3212 3959 6.097129 GCCCTAGATACAACTGATATACTCCC 59.903 46.154 0.00 0.00 0.00 4.30
3213 3960 7.415086 CCCTAGATACAACTGATATACTCCCT 58.585 42.308 0.00 0.00 0.00 4.20
3214 3961 7.558444 CCCTAGATACAACTGATATACTCCCTC 59.442 44.444 0.00 0.00 0.00 4.30
3215 3962 7.558444 CCTAGATACAACTGATATACTCCCTCC 59.442 44.444 0.00 0.00 0.00 4.30
3216 3963 5.946972 AGATACAACTGATATACTCCCTCCG 59.053 44.000 0.00 0.00 0.00 4.63
3217 3964 3.912248 ACAACTGATATACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
3218 3965 4.287552 ACAACTGATATACTCCCTCCGTT 58.712 43.478 0.00 0.00 0.00 4.44
3219 3966 4.341520 ACAACTGATATACTCCCTCCGTTC 59.658 45.833 0.00 0.00 0.00 3.95
3220 3967 3.498334 ACTGATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
3221 3968 3.117246 ACTGATATACTCCCTCCGTTCCA 60.117 47.826 0.00 0.00 0.00 3.53
3222 3969 3.895656 CTGATATACTCCCTCCGTTCCAA 59.104 47.826 0.00 0.00 0.00 3.53
3223 3970 4.291792 TGATATACTCCCTCCGTTCCAAA 58.708 43.478 0.00 0.00 0.00 3.28
3224 3971 4.717778 TGATATACTCCCTCCGTTCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
3225 3972 5.368523 TGATATACTCCCTCCGTTCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
3226 3973 6.555738 TGATATACTCCCTCCGTTCCAAAATA 59.444 38.462 0.00 0.00 0.00 1.40
3227 3974 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
3228 3975 2.910977 ACTCCCTCCGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
3229 3976 3.055312 ACTCCCTCCGTTCCAAAATACTC 60.055 47.826 0.00 0.00 0.00 2.59
3230 3977 2.237893 TCCCTCCGTTCCAAAATACTCC 59.762 50.000 0.00 0.00 0.00 3.85
3231 3978 2.640184 CCTCCGTTCCAAAATACTCCC 58.360 52.381 0.00 0.00 0.00 4.30
3232 3979 2.238898 CCTCCGTTCCAAAATACTCCCT 59.761 50.000 0.00 0.00 0.00 4.20
3233 3980 3.308188 CCTCCGTTCCAAAATACTCCCTT 60.308 47.826 0.00 0.00 0.00 3.95
3234 3981 4.332828 CTCCGTTCCAAAATACTCCCTTT 58.667 43.478 0.00 0.00 0.00 3.11
3235 3982 4.076394 TCCGTTCCAAAATACTCCCTTTG 58.924 43.478 0.00 0.00 33.25 2.77
3236 3983 3.824443 CCGTTCCAAAATACTCCCTTTGT 59.176 43.478 0.00 0.00 31.84 2.83
3237 3984 4.279922 CCGTTCCAAAATACTCCCTTTGTT 59.720 41.667 0.00 0.00 31.84 2.83
3238 3985 5.221362 CCGTTCCAAAATACTCCCTTTGTTT 60.221 40.000 0.00 0.00 31.84 2.83
3239 3986 5.918576 CGTTCCAAAATACTCCCTTTGTTTC 59.081 40.000 0.00 0.00 31.84 2.78
3240 3987 6.460399 CGTTCCAAAATACTCCCTTTGTTTCA 60.460 38.462 0.00 0.00 31.84 2.69
3241 3988 7.269316 GTTCCAAAATACTCCCTTTGTTTCAA 58.731 34.615 0.00 0.00 31.84 2.69
3242 3989 7.425224 TCCAAAATACTCCCTTTGTTTCAAA 57.575 32.000 0.00 0.00 31.84 2.69
3243 3990 7.852263 TCCAAAATACTCCCTTTGTTTCAAAA 58.148 30.769 0.00 0.00 31.84 2.44
3244 3991 8.490311 TCCAAAATACTCCCTTTGTTTCAAAAT 58.510 29.630 0.00 0.00 31.84 1.82
3245 3992 9.771534 CCAAAATACTCCCTTTGTTTCAAAATA 57.228 29.630 0.00 0.00 31.84 1.40
3250 3997 9.753674 ATACTCCCTTTGTTTCAAAATAGATGA 57.246 29.630 0.00 0.00 0.00 2.92
3251 3998 7.886338 ACTCCCTTTGTTTCAAAATAGATGAC 58.114 34.615 0.00 0.00 0.00 3.06
3252 3999 7.039714 ACTCCCTTTGTTTCAAAATAGATGACC 60.040 37.037 0.00 0.00 0.00 4.02
3253 4000 6.210584 TCCCTTTGTTTCAAAATAGATGACCC 59.789 38.462 0.00 0.00 0.00 4.46
3254 4001 6.014669 CCCTTTGTTTCAAAATAGATGACCCA 60.015 38.462 0.00 0.00 0.00 4.51
3255 4002 7.441017 CCTTTGTTTCAAAATAGATGACCCAA 58.559 34.615 0.00 0.00 0.00 4.12
3256 4003 7.384932 CCTTTGTTTCAAAATAGATGACCCAAC 59.615 37.037 0.00 0.00 0.00 3.77
3257 4004 7.595819 TTGTTTCAAAATAGATGACCCAACT 57.404 32.000 0.00 0.00 0.00 3.16
3258 4005 7.595819 TGTTTCAAAATAGATGACCCAACTT 57.404 32.000 0.00 0.00 0.00 2.66
3259 4006 7.657336 TGTTTCAAAATAGATGACCCAACTTC 58.343 34.615 0.00 0.00 0.00 3.01
3260 4007 7.286546 TGTTTCAAAATAGATGACCCAACTTCA 59.713 33.333 0.00 0.00 0.00 3.02
3261 4008 8.306761 GTTTCAAAATAGATGACCCAACTTCAT 58.693 33.333 0.00 0.00 36.37 2.57
3262 4009 9.527157 TTTCAAAATAGATGACCCAACTTCATA 57.473 29.630 0.00 0.00 33.70 2.15
3263 4010 8.506168 TCAAAATAGATGACCCAACTTCATAC 57.494 34.615 0.00 0.00 33.70 2.39
3264 4011 8.328758 TCAAAATAGATGACCCAACTTCATACT 58.671 33.333 0.00 0.00 33.70 2.12
3265 4012 9.613428 CAAAATAGATGACCCAACTTCATACTA 57.387 33.333 0.00 0.00 33.70 1.82
3267 4014 9.614792 AAATAGATGACCCAACTTCATACTAAC 57.385 33.333 0.00 0.00 33.70 2.34
3268 4015 6.875972 AGATGACCCAACTTCATACTAACT 57.124 37.500 0.00 0.00 33.70 2.24
3269 4016 7.259088 AGATGACCCAACTTCATACTAACTT 57.741 36.000 0.00 0.00 33.70 2.66
3270 4017 7.690256 AGATGACCCAACTTCATACTAACTTT 58.310 34.615 0.00 0.00 33.70 2.66
3271 4018 7.607991 AGATGACCCAACTTCATACTAACTTTG 59.392 37.037 0.00 0.00 33.70 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.529378 CCCAAAGATCTGCAAGTGGC 59.471 55.000 0.00 0.00 45.13 5.01
21 22 2.089980 CTCCCAAAGATCTGCAAGTGG 58.910 52.381 0.00 0.00 33.76 4.00
22 23 2.089980 CCTCCCAAAGATCTGCAAGTG 58.910 52.381 0.00 0.00 33.76 3.16
23 24 1.707427 ACCTCCCAAAGATCTGCAAGT 59.293 47.619 0.00 0.00 33.76 3.16
24 25 2.503895 ACCTCCCAAAGATCTGCAAG 57.496 50.000 0.00 0.00 0.00 4.01
25 26 2.978156 AACCTCCCAAAGATCTGCAA 57.022 45.000 0.00 0.00 0.00 4.08
26 27 2.978156 AAACCTCCCAAAGATCTGCA 57.022 45.000 0.00 0.00 0.00 4.41
27 28 4.379499 CGTAAAAACCTCCCAAAGATCTGC 60.379 45.833 0.00 0.00 0.00 4.26
28 29 4.156008 CCGTAAAAACCTCCCAAAGATCTG 59.844 45.833 0.00 0.00 0.00 2.90
29 30 4.332828 CCGTAAAAACCTCCCAAAGATCT 58.667 43.478 0.00 0.00 0.00 2.75
30 31 3.442625 CCCGTAAAAACCTCCCAAAGATC 59.557 47.826 0.00 0.00 0.00 2.75
31 32 3.074836 TCCCGTAAAAACCTCCCAAAGAT 59.925 43.478 0.00 0.00 0.00 2.40
32 33 2.442502 TCCCGTAAAAACCTCCCAAAGA 59.557 45.455 0.00 0.00 0.00 2.52
33 34 2.866351 TCCCGTAAAAACCTCCCAAAG 58.134 47.619 0.00 0.00 0.00 2.77
34 35 3.529216 ATCCCGTAAAAACCTCCCAAA 57.471 42.857 0.00 0.00 0.00 3.28
35 36 3.529216 AATCCCGTAAAAACCTCCCAA 57.471 42.857 0.00 0.00 0.00 4.12
36 37 3.845398 TCTAATCCCGTAAAAACCTCCCA 59.155 43.478 0.00 0.00 0.00 4.37
37 38 4.492494 TCTAATCCCGTAAAAACCTCCC 57.508 45.455 0.00 0.00 0.00 4.30
38 39 5.220989 GCAATCTAATCCCGTAAAAACCTCC 60.221 44.000 0.00 0.00 0.00 4.30
39 40 5.503520 CGCAATCTAATCCCGTAAAAACCTC 60.504 44.000 0.00 0.00 0.00 3.85
40 41 4.334481 CGCAATCTAATCCCGTAAAAACCT 59.666 41.667 0.00 0.00 0.00 3.50
41 42 4.594136 CGCAATCTAATCCCGTAAAAACC 58.406 43.478 0.00 0.00 0.00 3.27
42 43 4.033019 GCGCAATCTAATCCCGTAAAAAC 58.967 43.478 0.30 0.00 0.00 2.43
43 44 3.942748 AGCGCAATCTAATCCCGTAAAAA 59.057 39.130 11.47 0.00 0.00 1.94
44 45 3.537580 AGCGCAATCTAATCCCGTAAAA 58.462 40.909 11.47 0.00 0.00 1.52
45 46 3.188159 AGCGCAATCTAATCCCGTAAA 57.812 42.857 11.47 0.00 0.00 2.01
46 47 2.902705 AGCGCAATCTAATCCCGTAA 57.097 45.000 11.47 0.00 0.00 3.18
47 48 2.230508 CCTAGCGCAATCTAATCCCGTA 59.769 50.000 11.47 0.00 0.00 4.02
48 49 1.000955 CCTAGCGCAATCTAATCCCGT 59.999 52.381 11.47 0.00 0.00 5.28
49 50 1.000955 ACCTAGCGCAATCTAATCCCG 59.999 52.381 11.47 0.00 0.00 5.14
50 51 2.841442 ACCTAGCGCAATCTAATCCC 57.159 50.000 11.47 0.00 0.00 3.85
51 52 3.243336 CGTACCTAGCGCAATCTAATCC 58.757 50.000 11.47 0.00 0.00 3.01
52 53 3.898529 ACGTACCTAGCGCAATCTAATC 58.101 45.455 11.47 0.00 0.00 1.75
53 54 5.399858 CATACGTACCTAGCGCAATCTAAT 58.600 41.667 11.47 0.00 0.00 1.73
54 55 4.790878 CATACGTACCTAGCGCAATCTAA 58.209 43.478 11.47 0.00 0.00 2.10
55 56 3.365666 GCATACGTACCTAGCGCAATCTA 60.366 47.826 11.47 0.00 0.00 1.98
56 57 2.607282 GCATACGTACCTAGCGCAATCT 60.607 50.000 11.47 0.00 0.00 2.40
57 58 1.719780 GCATACGTACCTAGCGCAATC 59.280 52.381 11.47 0.00 0.00 2.67
58 59 1.067974 TGCATACGTACCTAGCGCAAT 59.932 47.619 11.47 0.00 0.00 3.56
59 60 0.456628 TGCATACGTACCTAGCGCAA 59.543 50.000 11.47 0.00 0.00 4.85
60 61 0.248743 GTGCATACGTACCTAGCGCA 60.249 55.000 11.47 8.09 35.89 6.09
61 62 1.266786 CGTGCATACGTACCTAGCGC 61.267 60.000 0.00 0.00 44.99 5.92
62 63 2.779636 CGTGCATACGTACCTAGCG 58.220 57.895 0.00 0.00 44.99 4.26
89 90 3.744719 TTCGTCCGCCAGACCTCG 61.745 66.667 0.00 0.00 43.08 4.63
90 91 2.126031 GTTCGTCCGCCAGACCTC 60.126 66.667 0.00 0.00 43.08 3.85
91 92 2.035237 TTTGTTCGTCCGCCAGACCT 62.035 55.000 0.00 0.00 43.08 3.85
92 93 1.566018 CTTTGTTCGTCCGCCAGACC 61.566 60.000 0.00 0.00 43.08 3.85
93 94 0.878961 ACTTTGTTCGTCCGCCAGAC 60.879 55.000 0.00 0.00 42.54 3.51
94 95 0.675083 TACTTTGTTCGTCCGCCAGA 59.325 50.000 0.00 0.00 0.00 3.86
95 96 1.659098 GATACTTTGTTCGTCCGCCAG 59.341 52.381 0.00 0.00 0.00 4.85
96 97 1.717194 GATACTTTGTTCGTCCGCCA 58.283 50.000 0.00 0.00 0.00 5.69
97 98 0.643820 CGATACTTTGTTCGTCCGCC 59.356 55.000 0.00 0.00 0.00 6.13
98 99 1.319669 GTCGATACTTTGTTCGTCCGC 59.680 52.381 0.00 0.00 36.74 5.54
99 100 2.587956 TGTCGATACTTTGTTCGTCCG 58.412 47.619 0.00 0.00 36.74 4.79
100 101 4.977741 TTTGTCGATACTTTGTTCGTCC 57.022 40.909 0.00 0.00 36.74 4.79
101 102 4.831779 CGTTTTGTCGATACTTTGTTCGTC 59.168 41.667 0.00 0.00 36.74 4.20
102 103 4.503734 TCGTTTTGTCGATACTTTGTTCGT 59.496 37.500 0.00 0.00 36.74 3.85
103 104 4.997107 TCGTTTTGTCGATACTTTGTTCG 58.003 39.130 0.00 0.00 34.85 3.95
104 105 5.332594 CGTTCGTTTTGTCGATACTTTGTTC 59.667 40.000 0.00 0.00 39.57 3.18
105 106 5.005586 TCGTTCGTTTTGTCGATACTTTGTT 59.994 36.000 0.00 0.00 39.57 2.83
106 107 4.503734 TCGTTCGTTTTGTCGATACTTTGT 59.496 37.500 0.00 0.00 39.57 2.83
107 108 4.997107 TCGTTCGTTTTGTCGATACTTTG 58.003 39.130 0.00 0.00 39.57 2.77
108 109 5.426240 GTTCGTTCGTTTTGTCGATACTTT 58.574 37.500 0.00 0.00 39.57 2.66
109 110 4.374309 CGTTCGTTCGTTTTGTCGATACTT 60.374 41.667 0.00 0.00 39.57 2.24
110 111 3.118482 CGTTCGTTCGTTTTGTCGATACT 59.882 43.478 0.00 0.00 39.57 2.12
111 112 3.117832 TCGTTCGTTCGTTTTGTCGATAC 59.882 43.478 0.00 0.00 39.57 2.24
112 113 3.117832 GTCGTTCGTTCGTTTTGTCGATA 59.882 43.478 0.00 0.00 39.57 2.92
113 114 2.097733 GTCGTTCGTTCGTTTTGTCGAT 60.098 45.455 0.00 0.00 39.57 3.59
114 115 1.252524 GTCGTTCGTTCGTTTTGTCGA 59.747 47.619 0.00 0.00 38.08 4.20
115 116 1.007217 TGTCGTTCGTTCGTTTTGTCG 60.007 47.619 2.67 0.00 0.00 4.35
116 117 2.699628 TGTCGTTCGTTCGTTTTGTC 57.300 45.000 2.67 0.00 0.00 3.18
117 118 3.060339 GGTATGTCGTTCGTTCGTTTTGT 60.060 43.478 2.67 0.00 0.00 2.83
118 119 3.463127 GGTATGTCGTTCGTTCGTTTTG 58.537 45.455 2.67 0.00 0.00 2.44
119 120 2.153627 CGGTATGTCGTTCGTTCGTTTT 59.846 45.455 2.67 0.00 0.00 2.43
120 121 1.715519 CGGTATGTCGTTCGTTCGTTT 59.284 47.619 2.67 0.00 0.00 3.60
121 122 1.069296 TCGGTATGTCGTTCGTTCGTT 60.069 47.619 2.67 0.00 0.00 3.85
122 123 0.516877 TCGGTATGTCGTTCGTTCGT 59.483 50.000 2.67 0.00 0.00 3.85
123 124 0.903187 GTCGGTATGTCGTTCGTTCG 59.097 55.000 0.00 0.00 0.00 3.95
124 125 2.253392 AGTCGGTATGTCGTTCGTTC 57.747 50.000 0.00 0.00 0.00 3.95
125 126 2.712057 AAGTCGGTATGTCGTTCGTT 57.288 45.000 0.00 0.00 0.00 3.85
126 127 2.159517 GGTAAGTCGGTATGTCGTTCGT 60.160 50.000 0.00 0.00 0.00 3.85
127 128 2.159531 TGGTAAGTCGGTATGTCGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
128 129 3.492421 TGGTAAGTCGGTATGTCGTTC 57.508 47.619 0.00 0.00 0.00 3.95
129 130 3.444742 TGATGGTAAGTCGGTATGTCGTT 59.555 43.478 0.00 0.00 0.00 3.85
130 131 3.018856 TGATGGTAAGTCGGTATGTCGT 58.981 45.455 0.00 0.00 0.00 4.34
131 132 3.066342 AGTGATGGTAAGTCGGTATGTCG 59.934 47.826 0.00 0.00 0.00 4.35
132 133 4.650754 AGTGATGGTAAGTCGGTATGTC 57.349 45.455 0.00 0.00 0.00 3.06
133 134 4.340381 GGTAGTGATGGTAAGTCGGTATGT 59.660 45.833 0.00 0.00 0.00 2.29
134 135 4.556104 CGGTAGTGATGGTAAGTCGGTATG 60.556 50.000 0.00 0.00 0.00 2.39
135 136 3.567164 CGGTAGTGATGGTAAGTCGGTAT 59.433 47.826 0.00 0.00 0.00 2.73
136 137 2.945008 CGGTAGTGATGGTAAGTCGGTA 59.055 50.000 0.00 0.00 0.00 4.02
137 138 1.747355 CGGTAGTGATGGTAAGTCGGT 59.253 52.381 0.00 0.00 0.00 4.69
138 139 1.747355 ACGGTAGTGATGGTAAGTCGG 59.253 52.381 0.00 0.00 0.00 4.79
139 140 3.873361 TCTACGGTAGTGATGGTAAGTCG 59.127 47.826 14.45 0.00 0.00 4.18
140 141 4.880696 AGTCTACGGTAGTGATGGTAAGTC 59.119 45.833 14.45 0.00 0.00 3.01
141 142 4.853007 AGTCTACGGTAGTGATGGTAAGT 58.147 43.478 14.45 0.00 0.00 2.24
142 143 5.589452 AGAAGTCTACGGTAGTGATGGTAAG 59.411 44.000 14.45 0.00 0.00 2.34
143 144 5.503927 AGAAGTCTACGGTAGTGATGGTAA 58.496 41.667 14.45 0.00 0.00 2.85
144 145 5.108187 AGAAGTCTACGGTAGTGATGGTA 57.892 43.478 14.45 0.00 0.00 3.25
145 146 3.965694 AGAAGTCTACGGTAGTGATGGT 58.034 45.455 14.45 0.00 0.00 3.55
146 147 4.985538 AAGAAGTCTACGGTAGTGATGG 57.014 45.455 14.45 0.00 0.00 3.51
167 168 5.989777 GGCCGTATATCTCTGCTTCTAAAAA 59.010 40.000 0.00 0.00 0.00 1.94
168 169 5.539048 GGCCGTATATCTCTGCTTCTAAAA 58.461 41.667 0.00 0.00 0.00 1.52
169 170 4.321008 CGGCCGTATATCTCTGCTTCTAAA 60.321 45.833 19.50 0.00 0.00 1.85
170 171 3.190744 CGGCCGTATATCTCTGCTTCTAA 59.809 47.826 19.50 0.00 0.00 2.10
171 172 2.747989 CGGCCGTATATCTCTGCTTCTA 59.252 50.000 19.50 0.00 0.00 2.10
172 173 1.542030 CGGCCGTATATCTCTGCTTCT 59.458 52.381 19.50 0.00 0.00 2.85
173 174 1.540267 TCGGCCGTATATCTCTGCTTC 59.460 52.381 27.15 0.00 0.00 3.86
174 175 1.617322 TCGGCCGTATATCTCTGCTT 58.383 50.000 27.15 0.00 0.00 3.91
175 176 1.617322 TTCGGCCGTATATCTCTGCT 58.383 50.000 27.15 0.00 0.00 4.24
176 177 2.263077 CATTCGGCCGTATATCTCTGC 58.737 52.381 27.15 0.00 0.00 4.26
177 178 2.263077 GCATTCGGCCGTATATCTCTG 58.737 52.381 27.15 10.77 36.11 3.35
178 179 1.135373 CGCATTCGGCCGTATATCTCT 60.135 52.381 27.15 0.00 40.31 3.10
179 180 1.135489 TCGCATTCGGCCGTATATCTC 60.135 52.381 27.15 9.81 40.31 2.75
180 181 0.885879 TCGCATTCGGCCGTATATCT 59.114 50.000 27.15 0.00 40.31 1.98
181 182 1.389106 GTTCGCATTCGGCCGTATATC 59.611 52.381 27.15 14.67 40.31 1.63
225 226 1.080093 TTTGACTAGCGGTGCTCGG 60.080 57.895 0.00 0.00 40.44 4.63
287 288 3.944015 AGTGCTGAGATATTGCTTTGACC 59.056 43.478 0.00 0.00 0.00 4.02
306 307 5.399301 CGTTAGCTTTTTGACCAATTGAGTG 59.601 40.000 7.12 0.00 0.00 3.51
307 308 5.067283 ACGTTAGCTTTTTGACCAATTGAGT 59.933 36.000 7.12 2.94 0.00 3.41
313 314 5.527951 TGATGTACGTTAGCTTTTTGACCAA 59.472 36.000 0.00 0.00 0.00 3.67
348 349 6.073657 CGACTTCGGAACAAACACCTTAAATA 60.074 38.462 0.00 0.00 35.37 1.40
381 382 6.142320 CGCTTTTGTCAAATCCAGAAGTAAAC 59.858 38.462 0.00 0.00 0.00 2.01
411 412 1.607509 CGGTGAGATGATGGATGAGCC 60.608 57.143 0.00 0.00 37.10 4.70
417 418 4.411013 ACTGATATCGGTGAGATGATGGA 58.589 43.478 16.56 0.00 40.40 3.41
438 439 6.639686 TCGGAAGAAAAGTATCGTATATGCAC 59.360 38.462 0.00 0.00 37.03 4.57
443 444 6.363577 ACGTCGGAAGAAAAGTATCGTATA 57.636 37.500 0.00 0.00 45.01 1.47
669 686 3.328382 TTCGACATCCACCTCGATTTT 57.672 42.857 0.00 0.00 38.65 1.82
676 693 6.099845 ACCTATAAGAATTTCGACATCCACCT 59.900 38.462 0.00 0.00 0.00 4.00
700 717 5.648572 ACTAGCAAAGTTACATACTCCGAC 58.351 41.667 0.00 0.00 35.54 4.79
701 718 5.909621 ACTAGCAAAGTTACATACTCCGA 57.090 39.130 0.00 0.00 35.54 4.55
734 1305 8.553153 TGGAGGGAGTATATTTGTAATTGTCAA 58.447 33.333 0.00 0.00 0.00 3.18
788 1475 7.211573 ACGTGTCCATATACATCCGATTTAAA 58.788 34.615 0.00 0.00 0.00 1.52
789 1476 6.751157 ACGTGTCCATATACATCCGATTTAA 58.249 36.000 0.00 0.00 0.00 1.52
790 1477 6.335471 ACGTGTCCATATACATCCGATTTA 57.665 37.500 0.00 0.00 0.00 1.40
796 1483 9.731819 CATACTAATACGTGTCCATATACATCC 57.268 37.037 0.00 0.00 0.00 3.51
806 1493 7.330208 AGTGAACAAACATACTAATACGTGTCC 59.670 37.037 0.00 0.00 0.00 4.02
810 1497 8.997621 ATGAGTGAACAAACATACTAATACGT 57.002 30.769 0.00 0.00 0.00 3.57
855 1542 4.222114 CCCGTTCCGAATTATACGAGTAC 58.778 47.826 0.00 0.00 36.16 2.73
858 1545 2.035066 ACCCCGTTCCGAATTATACGAG 59.965 50.000 0.00 0.00 36.16 4.18
860 1547 2.514205 ACCCCGTTCCGAATTATACG 57.486 50.000 0.00 0.00 0.00 3.06
861 1548 4.590850 ACTACCCCGTTCCGAATTATAC 57.409 45.455 0.00 0.00 0.00 1.47
862 1549 6.916360 AATACTACCCCGTTCCGAATTATA 57.084 37.500 0.00 0.00 0.00 0.98
866 1553 3.708121 AGAAATACTACCCCGTTCCGAAT 59.292 43.478 0.00 0.00 0.00 3.34
867 1554 3.099141 AGAAATACTACCCCGTTCCGAA 58.901 45.455 0.00 0.00 0.00 4.30
906 1609 5.593010 CAGTTTACCGACAAAATGGGAAAA 58.407 37.500 0.00 0.00 39.71 2.29
962 1665 1.142748 CATGAGCTCACGTCCTCCC 59.857 63.158 20.97 0.00 0.00 4.30
977 1680 3.361644 GTGTACGCAAAAGTGAATGCATG 59.638 43.478 0.00 0.00 42.68 4.06
1779 2490 2.266055 GAGTTGAGGAGGGCACGG 59.734 66.667 0.00 0.00 0.00 4.94
2040 2754 3.908081 ACAGCGGACGTGTCGGTT 61.908 61.111 9.42 0.82 36.14 4.44
2160 2874 4.086178 ACGTCTCGGTCGCAGTCG 62.086 66.667 0.00 7.42 0.00 4.18
2318 3032 0.167470 CAGGATGTCGCAACAAGCAG 59.833 55.000 0.00 0.00 46.13 4.24
2445 3159 5.571784 TCATGAAAATGACATCTCTTGGC 57.428 39.130 0.00 0.00 0.00 4.52
2609 3340 2.112198 AACACGTGGTGCACTGGTG 61.112 57.895 21.57 23.92 36.98 4.17
2610 3341 2.112198 CAACACGTGGTGCACTGGT 61.112 57.895 22.47 9.38 36.98 4.00
2611 3342 0.812014 TACAACACGTGGTGCACTGG 60.812 55.000 32.70 9.28 36.98 4.00
2612 3343 1.010580 TTACAACACGTGGTGCACTG 58.989 50.000 32.70 10.09 36.98 3.66
2613 3344 1.668751 CTTTACAACACGTGGTGCACT 59.331 47.619 32.70 16.67 36.98 4.40
2614 3345 1.268335 CCTTTACAACACGTGGTGCAC 60.268 52.381 32.70 8.80 36.98 4.57
2717 3449 1.852280 TGATCGAAAGCTGCGTAATCG 59.148 47.619 8.80 11.27 40.37 3.34
2840 3578 9.676861 GAGGATATTGATTTGGTATCATGATGA 57.323 33.333 18.72 0.00 0.00 2.92
2841 3579 9.457436 TGAGGATATTGATTTGGTATCATGATG 57.543 33.333 18.72 0.00 0.00 3.07
2851 3589 6.262944 TGACCGATTTGAGGATATTGATTTGG 59.737 38.462 0.00 0.00 0.00 3.28
2882 3620 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2883 3621 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2884 3622 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2885 3623 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2886 3624 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2887 3625 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
2888 3626 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
2889 3627 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
2890 3628 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
2891 3629 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
2892 3630 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
2893 3631 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
2894 3632 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
2895 3633 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
2896 3634 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
2897 3635 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
2898 3636 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
2899 3637 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
2900 3638 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
2901 3639 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
2902 3640 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
2903 3641 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
2904 3642 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
2905 3643 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
2906 3644 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
2907 3645 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
2908 3646 7.831691 ATATCTAGATACATCCATTCCTCCG 57.168 40.000 14.71 0.00 0.00 4.63
2948 3686 9.301153 GTCGGAGAAATGCATAAAAATAAATGT 57.699 29.630 0.00 0.00 39.69 2.71
2949 3687 9.299963 TGTCGGAGAAATGCATAAAAATAAATG 57.700 29.630 0.00 0.00 39.69 2.32
2950 3688 9.868277 TTGTCGGAGAAATGCATAAAAATAAAT 57.132 25.926 0.00 0.00 39.69 1.40
2951 3689 9.352784 CTTGTCGGAGAAATGCATAAAAATAAA 57.647 29.630 0.00 0.00 39.69 1.40
2952 3690 8.519526 ACTTGTCGGAGAAATGCATAAAAATAA 58.480 29.630 0.00 0.00 39.69 1.40
2953 3691 8.050778 ACTTGTCGGAGAAATGCATAAAAATA 57.949 30.769 0.00 0.00 39.69 1.40
2954 3692 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
2955 3693 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
2956 3694 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
2957 3695 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
2958 3696 7.624360 AAATACTTGTCGGAGAAATGCATAA 57.376 32.000 0.00 0.00 39.69 1.90
2959 3697 7.335673 TGAAAATACTTGTCGGAGAAATGCATA 59.664 33.333 0.00 0.00 39.69 3.14
2960 3698 6.150976 TGAAAATACTTGTCGGAGAAATGCAT 59.849 34.615 0.00 0.00 39.69 3.96
2961 3699 5.471797 TGAAAATACTTGTCGGAGAAATGCA 59.528 36.000 0.00 0.00 39.69 3.96
2962 3700 5.938322 TGAAAATACTTGTCGGAGAAATGC 58.062 37.500 0.00 0.00 39.69 3.56
2963 3701 7.237173 GTCTGAAAATACTTGTCGGAGAAATG 58.763 38.462 0.00 0.00 39.69 2.32
2964 3702 6.090898 CGTCTGAAAATACTTGTCGGAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
2965 3703 5.404366 CGTCTGAAAATACTTGTCGGAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
2966 3704 4.921515 CGTCTGAAAATACTTGTCGGAGAA 59.078 41.667 0.00 0.00 39.69 2.87
2967 3705 4.482386 CGTCTGAAAATACTTGTCGGAGA 58.518 43.478 0.00 0.00 0.00 3.71
2968 3706 3.612860 CCGTCTGAAAATACTTGTCGGAG 59.387 47.826 0.00 0.00 38.03 4.63
2969 3707 3.256383 TCCGTCTGAAAATACTTGTCGGA 59.744 43.478 0.00 0.00 41.50 4.55
2970 3708 3.581755 TCCGTCTGAAAATACTTGTCGG 58.418 45.455 0.00 0.00 37.29 4.79
2971 3709 3.612860 CCTCCGTCTGAAAATACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2972 3710 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2973 3711 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2974 3712 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2975 3713 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2976 3714 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2977 3715 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2978 3716 7.850935 AATATACTCCCTCCGTCTGAAAATA 57.149 36.000 0.00 0.00 0.00 1.40
2979 3717 6.749036 AATATACTCCCTCCGTCTGAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
2980 3718 6.555463 AAATATACTCCCTCCGTCTGAAAA 57.445 37.500 0.00 0.00 0.00 2.29
2981 3719 6.555463 AAAATATACTCCCTCCGTCTGAAA 57.445 37.500 0.00 0.00 0.00 2.69
2982 3720 6.555463 AAAAATATACTCCCTCCGTCTGAA 57.445 37.500 0.00 0.00 0.00 3.02
2983 3721 7.850935 ATAAAAATATACTCCCTCCGTCTGA 57.149 36.000 0.00 0.00 0.00 3.27
3189 3936 7.558444 GGAGGGAGTATATCAGTTGTATCTAGG 59.442 44.444 0.00 0.00 0.00 3.02
3202 3949 4.950205 TTTGGAACGGAGGGAGTATATC 57.050 45.455 0.00 0.00 0.00 1.63
3203 3950 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
3210 3957 2.640184 GGAGTATTTTGGAACGGAGGG 58.360 52.381 0.00 0.00 0.00 4.30
3211 3958 2.238898 AGGGAGTATTTTGGAACGGAGG 59.761 50.000 0.00 0.00 0.00 4.30
3212 3959 3.629142 AGGGAGTATTTTGGAACGGAG 57.371 47.619 0.00 0.00 0.00 4.63
3213 3960 4.076394 CAAAGGGAGTATTTTGGAACGGA 58.924 43.478 0.00 0.00 32.13 4.69
3214 3961 3.824443 ACAAAGGGAGTATTTTGGAACGG 59.176 43.478 2.54 0.00 38.33 4.44
3215 3962 5.447624 AACAAAGGGAGTATTTTGGAACG 57.552 39.130 2.54 0.00 38.33 3.95
3216 3963 6.811954 TGAAACAAAGGGAGTATTTTGGAAC 58.188 36.000 2.54 0.00 38.33 3.62
3217 3964 7.425224 TTGAAACAAAGGGAGTATTTTGGAA 57.575 32.000 2.54 0.00 38.33 3.53
3218 3965 7.425224 TTTGAAACAAAGGGAGTATTTTGGA 57.575 32.000 0.00 0.00 38.33 3.53
3219 3966 8.675705 ATTTTGAAACAAAGGGAGTATTTTGG 57.324 30.769 0.00 0.00 38.33 3.28
3224 3971 9.753674 TCATCTATTTTGAAACAAAGGGAGTAT 57.246 29.630 0.00 0.00 0.00 2.12
3225 3972 9.010029 GTCATCTATTTTGAAACAAAGGGAGTA 57.990 33.333 0.00 0.00 0.00 2.59
3226 3973 7.039714 GGTCATCTATTTTGAAACAAAGGGAGT 60.040 37.037 0.00 0.00 0.00 3.85
3227 3974 7.315890 GGTCATCTATTTTGAAACAAAGGGAG 58.684 38.462 0.00 0.00 0.00 4.30
3228 3975 6.210584 GGGTCATCTATTTTGAAACAAAGGGA 59.789 38.462 0.00 0.00 0.00 4.20
3229 3976 6.014669 TGGGTCATCTATTTTGAAACAAAGGG 60.015 38.462 0.00 0.00 0.00 3.95
3230 3977 6.991938 TGGGTCATCTATTTTGAAACAAAGG 58.008 36.000 0.00 0.00 0.00 3.11
3231 3978 8.143835 AGTTGGGTCATCTATTTTGAAACAAAG 58.856 33.333 0.00 0.00 0.00 2.77
3232 3979 8.017418 AGTTGGGTCATCTATTTTGAAACAAA 57.983 30.769 0.00 0.00 0.00 2.83
3233 3980 7.595819 AGTTGGGTCATCTATTTTGAAACAA 57.404 32.000 0.00 0.00 0.00 2.83
3234 3981 7.286546 TGAAGTTGGGTCATCTATTTTGAAACA 59.713 33.333 0.00 0.00 0.00 2.83
3235 3982 7.657336 TGAAGTTGGGTCATCTATTTTGAAAC 58.343 34.615 0.00 0.00 0.00 2.78
3236 3983 7.831691 TGAAGTTGGGTCATCTATTTTGAAA 57.168 32.000 0.00 0.00 0.00 2.69
3237 3984 8.956426 GTATGAAGTTGGGTCATCTATTTTGAA 58.044 33.333 0.00 0.00 37.01 2.69
3238 3985 8.328758 AGTATGAAGTTGGGTCATCTATTTTGA 58.671 33.333 0.00 0.00 37.01 2.69
3239 3986 8.511604 AGTATGAAGTTGGGTCATCTATTTTG 57.488 34.615 0.00 0.00 37.01 2.44
3241 3988 9.614792 GTTAGTATGAAGTTGGGTCATCTATTT 57.385 33.333 0.00 0.00 37.01 1.40
3242 3989 8.993424 AGTTAGTATGAAGTTGGGTCATCTATT 58.007 33.333 0.00 0.00 37.01 1.73
3243 3990 8.554490 AGTTAGTATGAAGTTGGGTCATCTAT 57.446 34.615 0.00 0.00 37.01 1.98
3244 3991 7.973048 AGTTAGTATGAAGTTGGGTCATCTA 57.027 36.000 0.00 0.00 37.01 1.98
3245 3992 6.875972 AGTTAGTATGAAGTTGGGTCATCT 57.124 37.500 0.00 0.00 37.01 2.90
3246 3993 7.752695 CAAAGTTAGTATGAAGTTGGGTCATC 58.247 38.462 0.00 0.00 37.01 2.92
3247 3994 7.687941 CAAAGTTAGTATGAAGTTGGGTCAT 57.312 36.000 0.00 0.00 39.12 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.