Multiple sequence alignment - TraesCS6B01G208900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G208900 chr6B 100.000 9305 0 0 1 9305 274214729 274205425 0.000000e+00 17184.0
1 TraesCS6B01G208900 chr6B 93.445 717 18 2 2513 3229 547721497 547722184 0.000000e+00 1037.0
2 TraesCS6B01G208900 chr6B 100.000 31 0 0 8743 8773 274205874 274205844 3.630000e-04 58.4
3 TraesCS6B01G208900 chr6B 100.000 31 0 0 8856 8886 274205987 274205957 3.630000e-04 58.4
4 TraesCS6B01G208900 chr6A 96.050 5493 153 26 3222 8677 196188485 196193950 0.000000e+00 8883.0
5 TraesCS6B01G208900 chr6A 96.669 1351 30 8 1165 2512 196187161 196188499 0.000000e+00 2231.0
6 TraesCS6B01G208900 chr6A 96.540 1156 32 5 1 1149 196185958 196187112 0.000000e+00 1906.0
7 TraesCS6B01G208900 chr6A 95.455 418 14 2 8893 9305 196194458 196194875 0.000000e+00 662.0
8 TraesCS6B01G208900 chr6A 97.436 78 2 0 8770 8847 196193986 196194063 5.860000e-27 134.0
9 TraesCS6B01G208900 chr6A 100.000 33 0 0 8690 8722 196193948 196193980 2.810000e-05 62.1
10 TraesCS6B01G208900 chr6A 94.595 37 2 0 7567 7603 196192809 196192845 3.630000e-04 58.4
11 TraesCS6B01G208900 chr6D 96.547 4866 118 22 4013 8847 149731231 149726385 0.000000e+00 8010.0
12 TraesCS6B01G208900 chr6D 97.546 1345 30 3 1170 2512 149733311 149731968 0.000000e+00 2298.0
13 TraesCS6B01G208900 chr6D 96.752 1139 26 6 20 1149 149734503 149733367 0.000000e+00 1888.0
14 TraesCS6B01G208900 chr6D 96.693 756 19 2 3222 3975 149731982 149731231 0.000000e+00 1253.0
15 TraesCS6B01G208900 chr6D 95.362 345 11 2 8893 9232 149725944 149725600 2.290000e-150 544.0
16 TraesCS6B01G208900 chr6D 97.101 69 2 0 9237 9305 149725416 149725348 5.900000e-22 117.0
17 TraesCS6B01G208900 chr6D 97.297 37 1 0 7567 7603 149727701 149727665 7.800000e-06 63.9
18 TraesCS6B01G208900 chr1D 93.220 708 22 2 2513 3220 314715328 314716009 0.000000e+00 1018.0
19 TraesCS6B01G208900 chr3D 93.123 698 20 3 2536 3231 555479535 555478864 0.000000e+00 998.0
20 TraesCS6B01G208900 chr3D 87.110 706 49 21 2521 3220 262993403 262994072 0.000000e+00 761.0
21 TraesCS6B01G208900 chr3D 90.850 153 7 4 3065 3217 10331860 10332005 2.050000e-46 198.0
22 TraesCS6B01G208900 chr2D 92.385 696 22 3 2536 3218 305521832 305521155 0.000000e+00 963.0
23 TraesCS6B01G208900 chr5B 96.460 565 19 1 2513 3077 170590894 170591457 0.000000e+00 931.0
24 TraesCS6B01G208900 chr5B 87.251 251 26 5 1857 2104 172626103 172626350 1.980000e-71 281.0
25 TraesCS6B01G208900 chr7D 91.273 699 27 7 2533 3218 13721157 13721834 0.000000e+00 922.0
26 TraesCS6B01G208900 chr7D 89.930 715 19 9 2536 3232 594022458 594021779 0.000000e+00 872.0
27 TraesCS6B01G208900 chr7D 88.592 710 50 12 2513 3218 420735090 420735772 0.000000e+00 833.0
28 TraesCS6B01G208900 chr7A 90.603 713 32 13 2546 3238 374560748 374560051 0.000000e+00 913.0
29 TraesCS6B01G208900 chr7A 86.063 696 36 34 2536 3229 296563216 296563852 0.000000e+00 691.0
30 TraesCS6B01G208900 chr7A 93.103 203 14 0 2513 2715 30815271 30815473 1.960000e-76 298.0
31 TraesCS6B01G208900 chr7A 84.568 162 24 1 2513 2673 24386361 24386522 9.670000e-35 159.0
32 TraesCS6B01G208900 chr4B 89.603 731 36 10 2513 3232 415720092 415720793 0.000000e+00 893.0
33 TraesCS6B01G208900 chr4B 88.919 731 41 10 2513 3232 415666569 415667270 0.000000e+00 865.0
34 TraesCS6B01G208900 chr5A 89.972 718 33 6 2513 3228 205003476 205002796 0.000000e+00 891.0
35 TraesCS6B01G208900 chr3B 94.097 576 22 2 2513 3077 631963605 631964179 0.000000e+00 865.0
36 TraesCS6B01G208900 chr3B 86.538 260 30 3 1857 2115 351995111 351995366 1.980000e-71 281.0
37 TraesCS6B01G208900 chr5D 85.075 268 30 7 1857 2121 175768200 175767940 1.990000e-66 265.0
38 TraesCS6B01G208900 chr4D 84.411 263 36 4 1857 2118 506872335 506872077 4.310000e-63 254.0
39 TraesCS6B01G208900 chr1A 85.039 254 32 5 1857 2108 531220943 531221192 4.310000e-63 254.0
40 TraesCS6B01G208900 chr4A 84.091 264 37 4 1856 2118 710416527 710416268 5.580000e-62 250.0
41 TraesCS6B01G208900 chr1B 83.712 264 38 4 1856 2118 629066074 629065815 2.600000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G208900 chr6B 274205425 274214729 9304 True 17184.000000 17184 100.000000 1 9305 1 chr6B.!!$R1 9304
1 TraesCS6B01G208900 chr6B 547721497 547722184 687 False 1037.000000 1037 93.445000 2513 3229 1 chr6B.!!$F1 716
2 TraesCS6B01G208900 chr6A 196185958 196194875 8917 False 1990.928571 8883 96.677857 1 9305 7 chr6A.!!$F1 9304
3 TraesCS6B01G208900 chr6D 149725348 149734503 9155 True 2024.842857 8010 96.756857 20 9305 7 chr6D.!!$R1 9285
4 TraesCS6B01G208900 chr1D 314715328 314716009 681 False 1018.000000 1018 93.220000 2513 3220 1 chr1D.!!$F1 707
5 TraesCS6B01G208900 chr3D 555478864 555479535 671 True 998.000000 998 93.123000 2536 3231 1 chr3D.!!$R1 695
6 TraesCS6B01G208900 chr3D 262993403 262994072 669 False 761.000000 761 87.110000 2521 3220 1 chr3D.!!$F2 699
7 TraesCS6B01G208900 chr2D 305521155 305521832 677 True 963.000000 963 92.385000 2536 3218 1 chr2D.!!$R1 682
8 TraesCS6B01G208900 chr5B 170590894 170591457 563 False 931.000000 931 96.460000 2513 3077 1 chr5B.!!$F1 564
9 TraesCS6B01G208900 chr7D 13721157 13721834 677 False 922.000000 922 91.273000 2533 3218 1 chr7D.!!$F1 685
10 TraesCS6B01G208900 chr7D 594021779 594022458 679 True 872.000000 872 89.930000 2536 3232 1 chr7D.!!$R1 696
11 TraesCS6B01G208900 chr7D 420735090 420735772 682 False 833.000000 833 88.592000 2513 3218 1 chr7D.!!$F2 705
12 TraesCS6B01G208900 chr7A 374560051 374560748 697 True 913.000000 913 90.603000 2546 3238 1 chr7A.!!$R1 692
13 TraesCS6B01G208900 chr7A 296563216 296563852 636 False 691.000000 691 86.063000 2536 3229 1 chr7A.!!$F3 693
14 TraesCS6B01G208900 chr4B 415720092 415720793 701 False 893.000000 893 89.603000 2513 3232 1 chr4B.!!$F2 719
15 TraesCS6B01G208900 chr4B 415666569 415667270 701 False 865.000000 865 88.919000 2513 3232 1 chr4B.!!$F1 719
16 TraesCS6B01G208900 chr5A 205002796 205003476 680 True 891.000000 891 89.972000 2513 3228 1 chr5A.!!$R1 715
17 TraesCS6B01G208900 chr3B 631963605 631964179 574 False 865.000000 865 94.097000 2513 3077 1 chr3B.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 322 0.031716 CCTCCTGATCTGGGTGAGGA 60.032 60.000 17.73 7.80 44.34 3.71 F
1912 1961 0.319383 TTGCGCGGTTTTTGATGCAT 60.319 45.000 8.83 0.00 31.70 3.96 F
2890 2985 1.214325 CGTGCTCCCGTGTGTGATA 59.786 57.895 0.00 0.00 0.00 2.15 F
3232 3351 2.361757 TCGACTCGTAAACCTTGGTTCA 59.638 45.455 5.43 0.00 0.00 3.18 F
4192 4313 1.002544 AGAGTTGCCTGGCACTACTTC 59.997 52.381 23.30 15.65 38.71 3.01 F
5081 5203 0.172578 GTTGATGGTAAAAGCCGGGC 59.827 55.000 12.11 12.11 0.00 6.13 F
6654 6792 1.670087 CGAGTCCTGTTCATCAGCGTT 60.670 52.381 0.00 0.00 42.38 4.84 F
6840 6978 1.674962 CAAGAAGCATTAGCAGGAGCC 59.325 52.381 0.00 0.00 45.49 4.70 F
7813 7962 4.460034 AGAACATCATGTTGTGCTTGCATA 59.540 37.500 8.05 0.00 41.28 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2123 0.041312 GCGCGCTTGACTTTTTCTCA 60.041 50.000 26.67 0.00 0.00 3.27 R
3578 3699 3.559655 TGACGAGAGAAAATGTGTTGGTG 59.440 43.478 0.00 0.00 0.00 4.17 R
4192 4313 1.206849 ACCCAACAAGCAACACAAAGG 59.793 47.619 0.00 0.00 0.00 3.11 R
5074 5196 2.293318 TTGAGACAGATGCCCGGCT 61.293 57.895 11.61 0.00 0.00 5.52 R
5986 6122 1.247419 TGTGGGGCTTAAATGGCACG 61.247 55.000 0.00 0.00 38.90 5.34 R
6840 6978 1.451028 GCTGCAAGGACCTAGCTGG 60.451 63.158 7.40 0.00 42.93 4.85 R
7539 7685 1.049251 CCAATTGTTGTACGCGCAAC 58.951 50.000 18.87 18.87 46.36 4.17 R
7949 8098 1.260538 CCTGCTAGACCTCCACAGCA 61.261 60.000 0.00 0.00 41.52 4.41 R
9185 9744 1.134401 TCCTTGTCGATCAGATTGGGC 60.134 52.381 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 4.918201 CCCGCCGCCTCCTCATTC 62.918 72.222 0.00 0.00 0.00 2.67
320 322 0.031716 CCTCCTGATCTGGGTGAGGA 60.032 60.000 17.73 7.80 44.34 3.71
584 587 7.060383 TGGGCAATCATTTTGTTTTCTCTAA 57.940 32.000 0.00 0.00 0.00 2.10
669 672 3.186283 TGCTTGGTTAGTAGGGATGGAA 58.814 45.455 0.00 0.00 0.00 3.53
711 714 6.552725 TGCTATGGAACCAATGCCATTTATAA 59.447 34.615 14.87 0.00 42.03 0.98
838 841 2.349886 CGCTCACCTGCTCTCAAATTAC 59.650 50.000 0.00 0.00 0.00 1.89
923 930 4.214758 GGGTGCAAAATAGTTTACACGTCT 59.785 41.667 11.68 0.00 40.54 4.18
934 941 9.924650 AATAGTTTACACGTCTCTATTTTGTCT 57.075 29.630 0.00 0.00 30.36 3.41
935 942 7.639162 AGTTTACACGTCTCTATTTTGTCTG 57.361 36.000 0.00 0.00 0.00 3.51
936 943 6.145696 AGTTTACACGTCTCTATTTTGTCTGC 59.854 38.462 0.00 0.00 0.00 4.26
937 944 2.987149 ACACGTCTCTATTTTGTCTGCG 59.013 45.455 0.00 0.00 0.00 5.18
938 945 1.993370 ACGTCTCTATTTTGTCTGCGC 59.007 47.619 0.00 0.00 0.00 6.09
958 971 6.878317 TGCGCCATTATATCTATAGCTCTTT 58.122 36.000 4.18 0.00 0.00 2.52
959 972 6.758416 TGCGCCATTATATCTATAGCTCTTTG 59.242 38.462 4.18 0.00 0.00 2.77
1149 1163 6.813649 CGAGTTTGGGTGGTATATATGAGATG 59.186 42.308 0.00 0.00 0.00 2.90
1150 1164 7.020827 AGTTTGGGTGGTATATATGAGATGG 57.979 40.000 0.00 0.00 0.00 3.51
1151 1165 5.435686 TTGGGTGGTATATATGAGATGGC 57.564 43.478 0.00 0.00 0.00 4.40
1153 1167 4.040755 GGGTGGTATATATGAGATGGCCT 58.959 47.826 3.32 0.00 0.00 5.19
1154 1168 4.475016 GGGTGGTATATATGAGATGGCCTT 59.525 45.833 3.32 0.00 0.00 4.35
1155 1169 5.044846 GGGTGGTATATATGAGATGGCCTTT 60.045 44.000 3.32 0.00 0.00 3.11
1157 1171 6.375455 GGTGGTATATATGAGATGGCCTTTTG 59.625 42.308 3.32 0.00 0.00 2.44
1159 1173 7.448469 GTGGTATATATGAGATGGCCTTTTGTT 59.552 37.037 3.32 0.00 0.00 2.83
1160 1174 7.665559 TGGTATATATGAGATGGCCTTTTGTTC 59.334 37.037 3.32 0.00 0.00 3.18
1162 1176 1.923356 TGAGATGGCCTTTTGTTCCC 58.077 50.000 3.32 0.00 0.00 3.97
1163 1177 1.146774 TGAGATGGCCTTTTGTTCCCA 59.853 47.619 3.32 0.00 0.00 4.37
1164 1178 2.247358 GAGATGGCCTTTTGTTCCCAA 58.753 47.619 3.32 0.00 0.00 4.12
1165 1179 2.833943 GAGATGGCCTTTTGTTCCCAAT 59.166 45.455 3.32 0.00 0.00 3.16
1166 1180 4.023291 GAGATGGCCTTTTGTTCCCAATA 58.977 43.478 3.32 0.00 0.00 1.90
1167 1181 4.623863 AGATGGCCTTTTGTTCCCAATAT 58.376 39.130 3.32 0.00 0.00 1.28
1168 1182 4.406649 AGATGGCCTTTTGTTCCCAATATG 59.593 41.667 3.32 0.00 0.00 1.78
1912 1961 0.319383 TTGCGCGGTTTTTGATGCAT 60.319 45.000 8.83 0.00 31.70 3.96
1970 2019 8.998377 TGGATTGAACATGTATAAATGGTATCG 58.002 33.333 7.81 0.00 31.46 2.92
1976 2025 9.184062 GAACATGTATAAATGGTATCGTCGTAA 57.816 33.333 7.81 0.00 31.46 3.18
2073 2123 9.935241 ATAGTCAAAGTTATATGCGATGAAGAT 57.065 29.630 0.00 0.00 0.00 2.40
2074 2124 8.081208 AGTCAAAGTTATATGCGATGAAGATG 57.919 34.615 0.00 0.00 0.00 2.90
2405 2457 1.493772 TTAGTGTTTCTGCGTCGGTG 58.506 50.000 0.00 0.00 0.00 4.94
2449 2501 3.334583 AGTATGCACAAGACGGTTGAT 57.665 42.857 6.77 0.00 0.00 2.57
2510 2562 9.125026 ACTTGAATGAATCAACTTTAGTTCACT 57.875 29.630 0.00 0.00 43.08 3.41
2511 2563 9.956720 CTTGAATGAATCAACTTTAGTTCACTT 57.043 29.630 0.00 0.00 43.08 3.16
2704 2790 1.490910 GATAAGTTACCCAGCCTGGCT 59.509 52.381 17.22 17.22 40.77 4.75
2890 2985 1.214325 CGTGCTCCCGTGTGTGATA 59.786 57.895 0.00 0.00 0.00 2.15
3197 3316 6.598064 TCACGATTAGTCTATGAGTCTCAACA 59.402 38.462 6.64 0.00 0.00 3.33
3232 3351 2.361757 TCGACTCGTAAACCTTGGTTCA 59.638 45.455 5.43 0.00 0.00 3.18
3233 3352 2.473984 CGACTCGTAAACCTTGGTTCAC 59.526 50.000 5.43 0.43 0.00 3.18
3578 3699 6.985059 AGTTGTAGACACACCTAAAAGAACTC 59.015 38.462 0.00 0.00 33.30 3.01
3595 3716 5.440610 AGAACTCACCAACACATTTTCTCT 58.559 37.500 0.00 0.00 0.00 3.10
3940 4061 8.240682 CGAAAATAAATGTTGTCTACCCAATCA 58.759 33.333 0.00 0.00 0.00 2.57
3947 4068 4.041567 TGTTGTCTACCCAATCACTCATGT 59.958 41.667 0.00 0.00 0.00 3.21
3980 4101 9.875675 GTGTCAAAATTGATAAGATATGCTCTC 57.124 33.333 0.00 0.00 39.73 3.20
4053 4174 9.771915 CAACTGTTTTTGTTTTCAATGCTAAAT 57.228 25.926 0.00 0.00 39.70 1.40
4121 4242 4.713824 ATCATTGCAGTCTTTCATGTGG 57.286 40.909 0.00 0.00 0.00 4.17
4192 4313 1.002544 AGAGTTGCCTGGCACTACTTC 59.997 52.381 23.30 15.65 38.71 3.01
4241 4362 6.757897 TGGATTTAAGTTAGTGCCTGATTG 57.242 37.500 0.00 0.00 0.00 2.67
4276 4397 6.809196 CAGTATCACTTCTTGTTGAGGAGTAC 59.191 42.308 0.00 0.00 42.63 2.73
4354 4475 1.718757 GGTGTTCTGATGCCATCCGC 61.719 60.000 1.49 0.00 38.31 5.54
4400 4521 3.070015 ACATTGAGCCCTTGAAACTTTGG 59.930 43.478 0.00 0.00 0.00 3.28
4406 4527 5.013704 TGAGCCCTTGAAACTTTGGATAGTA 59.986 40.000 0.00 0.00 0.00 1.82
4644 4766 3.941483 AGACCGCATCCTCAATTACTTTG 59.059 43.478 0.00 0.00 36.61 2.77
4688 4810 5.375417 TGTGGAATGAATGTAGTTGCTTG 57.625 39.130 0.00 0.00 0.00 4.01
4734 4856 3.449018 GTGGATGCTCTCTAGTTTCTGGA 59.551 47.826 0.00 0.00 0.00 3.86
4793 4915 7.410120 ACTTTTTAGGCTTCAAATATGGAGG 57.590 36.000 0.00 0.00 32.24 4.30
4806 4928 6.761242 TCAAATATGGAGGATTACAAGTCACG 59.239 38.462 0.00 0.00 0.00 4.35
4854 4976 6.537301 TCAAATACGGCAGGATTACAAGTTAG 59.463 38.462 0.00 0.00 0.00 2.34
4882 5004 4.137116 TGTAGCAGGTTAACTATGGCAG 57.863 45.455 5.42 0.00 0.00 4.85
4907 5029 6.316390 GGATCCCCATATTTTCGTATGCTTAG 59.684 42.308 0.00 0.00 32.03 2.18
5074 5196 3.161866 GGGGAGCTTGTTGATGGTAAAA 58.838 45.455 0.00 0.00 0.00 1.52
5081 5203 0.172578 GTTGATGGTAAAAGCCGGGC 59.827 55.000 12.11 12.11 0.00 6.13
5142 5277 5.177142 CGATAGCACTGGAGATTCTCAAATG 59.823 44.000 15.36 5.60 31.08 2.32
5155 5290 8.306680 AGATTCTCAAATGAACTGCAATTTTG 57.693 30.769 0.00 0.00 31.03 2.44
5241 5377 9.554053 ACCATCTTTTCTATGCTACTATATCCT 57.446 33.333 0.00 0.00 0.00 3.24
5557 5693 1.733399 AGGCGCGAGAAAAGACGTC 60.733 57.895 12.10 7.70 0.00 4.34
5882 6018 9.880157 TGGAGTAGATGTTATTAAACTTGTACC 57.120 33.333 7.42 0.00 38.90 3.34
5965 6101 4.314522 TGCACCATCTCAAATCCCTAAA 57.685 40.909 0.00 0.00 0.00 1.85
6085 6222 5.368145 AGTTATTGTTGTCTCTGCACTCAA 58.632 37.500 0.00 0.00 0.00 3.02
6197 6335 1.711375 TGGGGTACTTTGGTGGCATTA 59.289 47.619 0.00 0.00 0.00 1.90
6221 6359 7.578310 AATGCAATTACAATCTGTCAGCTAT 57.422 32.000 0.00 0.00 32.46 2.97
6226 6364 7.412853 CAATTACAATCTGTCAGCTATTCACC 58.587 38.462 0.00 0.00 0.00 4.02
6403 6541 4.319177 CGACTCCAAATCTGAAAGGAAGT 58.681 43.478 0.00 0.00 0.00 3.01
6414 6552 3.355378 TGAAAGGAAGTCCGGTATCGTA 58.645 45.455 0.00 0.00 42.08 3.43
6459 6597 6.673839 AGCAAATCTAGGTTCCCTATACTC 57.326 41.667 0.00 0.00 35.36 2.59
6654 6792 1.670087 CGAGTCCTGTTCATCAGCGTT 60.670 52.381 0.00 0.00 42.38 4.84
6840 6978 1.674962 CAAGAAGCATTAGCAGGAGCC 59.325 52.381 0.00 0.00 45.49 4.70
7571 7717 8.487970 CGTACAACAATTGGACATATGACTATC 58.512 37.037 10.38 0.00 45.00 2.08
7609 7755 7.805542 CACGTACAACAATTGGACATGATTTTA 59.194 33.333 10.83 0.00 39.97 1.52
7707 7856 5.572511 CCCACACAAATGATGTAATTGAACG 59.427 40.000 0.00 0.00 41.46 3.95
7735 7884 8.081633 TCAGTTTCTGCATTATTACAAACTTGG 58.918 33.333 0.00 0.00 32.94 3.61
7789 7938 9.529325 TTCTCAACTATTGTGTTATCGGATAAG 57.471 33.333 10.60 0.51 0.00 1.73
7813 7962 4.460034 AGAACATCATGTTGTGCTTGCATA 59.540 37.500 8.05 0.00 41.28 3.14
7984 8133 0.457851 CAGGTACAGAAGGAGGAGCG 59.542 60.000 0.00 0.00 0.00 5.03
8439 8588 5.817816 GGACAACCATAATCTGAGGTTAGTG 59.182 44.000 0.00 0.00 43.43 2.74
8510 8659 6.071896 TGTTAATGGTGCGAATCATGGTTTTA 60.072 34.615 0.00 0.00 0.00 1.52
8530 8682 7.698130 GGTTTTAATCAAAGCTGCTACATGTAG 59.302 37.037 25.68 25.68 39.42 2.74
8532 8684 9.443323 TTTTAATCAAAGCTGCTACATGTAGTA 57.557 29.630 28.95 24.87 35.65 1.82
8533 8685 9.443323 TTTAATCAAAGCTGCTACATGTAGTAA 57.557 29.630 28.95 18.70 35.65 2.24
8535 8687 7.721286 ATCAAAGCTGCTACATGTAGTAATC 57.279 36.000 28.95 19.82 35.65 1.75
8536 8688 6.878317 TCAAAGCTGCTACATGTAGTAATCT 58.122 36.000 28.95 21.35 35.65 2.40
8537 8689 7.331026 TCAAAGCTGCTACATGTAGTAATCTT 58.669 34.615 28.95 24.67 35.65 2.40
8538 8690 8.474831 TCAAAGCTGCTACATGTAGTAATCTTA 58.525 33.333 28.95 15.27 35.65 2.10
8539 8691 9.265901 CAAAGCTGCTACATGTAGTAATCTTAT 57.734 33.333 28.95 17.58 35.65 1.73
8580 8732 3.632604 GGACACCGAGTCTCTTATGATCA 59.367 47.826 0.00 0.00 46.72 2.92
8581 8733 4.261405 GGACACCGAGTCTCTTATGATCAG 60.261 50.000 0.09 0.00 46.72 2.90
8582 8734 4.274147 ACACCGAGTCTCTTATGATCAGT 58.726 43.478 0.09 0.00 0.00 3.41
8585 8737 3.058570 CCGAGTCTCTTATGATCAGTCCG 60.059 52.174 0.09 0.00 0.00 4.79
8586 8738 3.810386 CGAGTCTCTTATGATCAGTCCGA 59.190 47.826 0.09 0.00 0.00 4.55
8587 8739 4.084066 CGAGTCTCTTATGATCAGTCCGAG 60.084 50.000 0.09 4.82 0.00 4.63
8588 8740 4.787551 AGTCTCTTATGATCAGTCCGAGT 58.212 43.478 0.09 0.00 0.00 4.18
8590 8742 6.358178 AGTCTCTTATGATCAGTCCGAGTTA 58.642 40.000 0.09 0.00 0.00 2.24
8591 8743 6.485313 AGTCTCTTATGATCAGTCCGAGTTAG 59.515 42.308 0.09 0.00 0.00 2.34
8651 8810 6.687531 CGTCCGTATGCTATATATGAACTGTC 59.312 42.308 0.00 0.00 0.00 3.51
8741 8901 7.149973 CCATTTGGTGGCTTATGATAATCTTG 58.850 38.462 0.00 0.00 42.12 3.02
8747 8907 6.461509 GGTGGCTTATGATAATCTTGGTTTGG 60.462 42.308 0.00 0.00 0.00 3.28
8748 8908 6.321181 GTGGCTTATGATAATCTTGGTTTGGA 59.679 38.462 0.00 0.00 0.00 3.53
8749 8909 6.894654 TGGCTTATGATAATCTTGGTTTGGAA 59.105 34.615 0.00 0.00 0.00 3.53
8750 8910 7.564660 TGGCTTATGATAATCTTGGTTTGGAAT 59.435 33.333 0.00 0.00 0.00 3.01
8751 8911 7.869429 GGCTTATGATAATCTTGGTTTGGAATG 59.131 37.037 0.00 0.00 0.00 2.67
8752 8912 8.632679 GCTTATGATAATCTTGGTTTGGAATGA 58.367 33.333 0.00 0.00 0.00 2.57
8756 8916 9.826574 ATGATAATCTTGGTTTGGAATGATTTG 57.173 29.630 0.00 0.00 0.00 2.32
8757 8917 8.814931 TGATAATCTTGGTTTGGAATGATTTGT 58.185 29.630 0.00 0.00 0.00 2.83
8758 8918 9.657419 GATAATCTTGGTTTGGAATGATTTGTT 57.343 29.630 0.00 0.00 0.00 2.83
8759 8919 7.733402 AATCTTGGTTTGGAATGATTTGTTG 57.267 32.000 0.00 0.00 0.00 3.33
8760 8920 5.609423 TCTTGGTTTGGAATGATTTGTTGG 58.391 37.500 0.00 0.00 0.00 3.77
8761 8921 5.365025 TCTTGGTTTGGAATGATTTGTTGGA 59.635 36.000 0.00 0.00 0.00 3.53
8762 8922 5.822132 TGGTTTGGAATGATTTGTTGGAT 57.178 34.783 0.00 0.00 0.00 3.41
8763 8923 6.185114 TGGTTTGGAATGATTTGTTGGATT 57.815 33.333 0.00 0.00 0.00 3.01
8764 8924 5.996513 TGGTTTGGAATGATTTGTTGGATTG 59.003 36.000 0.00 0.00 0.00 2.67
8765 8925 5.997129 GGTTTGGAATGATTTGTTGGATTGT 59.003 36.000 0.00 0.00 0.00 2.71
8766 8926 6.486320 GGTTTGGAATGATTTGTTGGATTGTT 59.514 34.615 0.00 0.00 0.00 2.83
8767 8927 7.659390 GGTTTGGAATGATTTGTTGGATTGTTA 59.341 33.333 0.00 0.00 0.00 2.41
8860 9020 9.677567 GGTATAATATTACAACTGCATGTTTGG 57.322 33.333 0.00 0.00 36.63 3.28
8865 9025 5.781210 TTACAACTGCATGTTTGGAATGA 57.219 34.783 0.00 0.00 36.63 2.57
8869 9029 5.467399 ACAACTGCATGTTTGGAATGATTTG 59.533 36.000 7.52 0.00 36.63 2.32
8870 9030 5.217978 ACTGCATGTTTGGAATGATTTGT 57.782 34.783 0.00 0.00 0.00 2.83
8871 9031 5.613329 ACTGCATGTTTGGAATGATTTGTT 58.387 33.333 0.00 0.00 0.00 2.83
8872 9032 5.467399 ACTGCATGTTTGGAATGATTTGTTG 59.533 36.000 0.00 0.00 0.00 3.33
8873 9033 4.755629 TGCATGTTTGGAATGATTTGTTGG 59.244 37.500 0.00 0.00 0.00 3.77
8874 9034 4.996122 GCATGTTTGGAATGATTTGTTGGA 59.004 37.500 0.00 0.00 0.00 3.53
8875 9035 5.644636 GCATGTTTGGAATGATTTGTTGGAT 59.355 36.000 0.00 0.00 0.00 3.41
8877 9037 7.523219 CATGTTTGGAATGATTTGTTGGATTG 58.477 34.615 0.00 0.00 0.00 2.67
8881 9041 9.218440 GTTTGGAATGATTTGTTGGATTGTTAT 57.782 29.630 0.00 0.00 0.00 1.89
8882 9042 9.790344 TTTGGAATGATTTGTTGGATTGTTATT 57.210 25.926 0.00 0.00 0.00 1.40
8884 9044 9.868277 TGGAATGATTTGTTGGATTGTTATTAC 57.132 29.630 0.00 0.00 0.00 1.89
8885 9045 9.868277 GGAATGATTTGTTGGATTGTTATTACA 57.132 29.630 0.00 0.00 0.00 2.41
8890 9050 9.301153 GATTTGTTGGATTGTTATTACACATCC 57.699 33.333 14.15 14.15 39.63 3.51
8891 9051 6.767524 TGTTGGATTGTTATTACACATCCC 57.232 37.500 16.49 8.27 39.09 3.85
8922 9481 2.223433 GCAATCCTAGCAGTTCATGTGC 60.223 50.000 0.00 0.00 41.54 4.57
8981 9540 1.739562 CCTCTCGCAGTGCACTTCC 60.740 63.158 18.94 10.46 0.00 3.46
9116 9675 7.039011 CCCATTGTGGTCTGTATAGCTCTAATA 60.039 40.741 0.00 0.00 35.17 0.98
9181 9740 3.547054 TTTGACGTACCAGTTCCTTGT 57.453 42.857 0.00 0.00 0.00 3.16
9185 9744 3.623960 TGACGTACCAGTTCCTTGTTTTG 59.376 43.478 0.00 0.00 0.00 2.44
9186 9745 2.356695 ACGTACCAGTTCCTTGTTTTGC 59.643 45.455 0.00 0.00 0.00 3.68
9251 9994 7.818930 TCTCACCATCAAATTAATTTGGCTTTC 59.181 33.333 30.96 0.00 45.39 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.474570 CTCTGCGGGGGAAGGGAG 61.475 72.222 0.00 0.00 0.00 4.30
13 14 4.082523 CGAAAGCTCTGCGGGGGA 62.083 66.667 0.00 0.00 0.00 4.81
33 34 1.660917 GGAGCTTCGATCCTACCGG 59.339 63.158 0.00 0.00 33.77 5.28
39 40 2.279784 CTGCCGGAGCTTCGATCC 60.280 66.667 18.24 4.26 40.80 3.36
100 101 1.144936 CCAGACCGAATGAGGAGGC 59.855 63.158 0.00 0.00 34.73 4.70
173 175 1.060713 ACGCAGATCGAAACGTGAAG 58.939 50.000 4.87 0.00 41.67 3.02
320 322 4.019681 TCATTACACGAATCCAAACCTCCT 60.020 41.667 0.00 0.00 0.00 3.69
584 587 1.882623 GCAAGAAACAAGCAGCTAGGT 59.117 47.619 0.00 0.00 0.00 3.08
669 672 6.155221 TCCATAGCATTCTCTAACTGAGTTGT 59.845 38.462 8.33 0.00 43.13 3.32
838 841 1.673920 AGCACACAACCAAGTAAACCG 59.326 47.619 0.00 0.00 0.00 4.44
931 938 5.837437 AGCTATAGATATAATGGCGCAGAC 58.163 41.667 10.83 0.00 36.09 3.51
932 939 5.830457 AGAGCTATAGATATAATGGCGCAGA 59.170 40.000 10.83 0.00 36.09 4.26
933 940 6.083098 AGAGCTATAGATATAATGGCGCAG 57.917 41.667 10.83 0.00 36.09 5.18
934 941 6.471233 AAGAGCTATAGATATAATGGCGCA 57.529 37.500 10.83 0.00 36.09 6.09
935 942 6.758886 ACAAAGAGCTATAGATATAATGGCGC 59.241 38.462 3.21 0.00 36.09 6.53
936 943 8.709386 AACAAAGAGCTATAGATATAATGGCG 57.291 34.615 3.21 0.00 36.09 5.69
958 971 3.540617 TGCTTCAAGCTGTGAGTAAACA 58.459 40.909 11.57 0.00 42.97 2.83
959 972 4.453819 AGATGCTTCAAGCTGTGAGTAAAC 59.546 41.667 11.57 0.00 42.97 2.01
1157 1171 9.434420 TGAATTTTTCATCAACATATTGGGAAC 57.566 29.630 0.00 0.00 33.89 3.62
1274 1323 6.126940 ACAGATGGCACTTGTATCTATTCACT 60.127 38.462 4.08 0.00 30.43 3.41
1677 1726 5.010282 AGAGAGAGAGAAGAAGAACTGACC 58.990 45.833 0.00 0.00 0.00 4.02
1771 1820 9.936759 ACAGGAAATTGACTAAAAACAGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
2073 2123 0.041312 GCGCGCTTGACTTTTTCTCA 60.041 50.000 26.67 0.00 0.00 3.27
2074 2124 0.726118 GGCGCGCTTGACTTTTTCTC 60.726 55.000 32.29 5.07 0.00 2.87
2386 2438 1.493772 CACCGACGCAGAAACACTAA 58.506 50.000 0.00 0.00 0.00 2.24
2387 2439 0.942410 GCACCGACGCAGAAACACTA 60.942 55.000 0.00 0.00 0.00 2.74
2449 2501 8.792830 AACAGCTTTATCAAAACTAGCATCTA 57.207 30.769 0.00 0.00 0.00 1.98
2510 2562 2.422479 CCCTCGACTCGTAATCAGTGAA 59.578 50.000 0.00 0.00 0.00 3.18
2511 2563 2.014857 CCCTCGACTCGTAATCAGTGA 58.985 52.381 0.00 0.00 0.00 3.41
2764 2850 6.320434 TCTATCTCTCTTCCTTCTCTGTCA 57.680 41.667 0.00 0.00 0.00 3.58
2767 2853 5.940617 TCCTCTATCTCTCTTCCTTCTCTG 58.059 45.833 0.00 0.00 0.00 3.35
2890 2985 4.666253 ATTGCCACCGCCAGCACT 62.666 61.111 0.00 0.00 39.10 4.40
3027 3125 6.803320 CAGTATGCAATAAAACCAGAAGTGTG 59.197 38.462 0.00 0.00 0.00 3.82
3323 3442 6.890268 CAGGCAGGGATACTACTATGTGTATA 59.110 42.308 0.00 0.00 30.49 1.47
3456 3575 9.866655 ATGCCCATTAGACTTTAAATGAATAGA 57.133 29.630 0.00 0.00 35.53 1.98
3516 3637 5.841810 TGCATAACCAACCTTCTGAAAAAG 58.158 37.500 0.00 0.00 0.00 2.27
3578 3699 3.559655 TGACGAGAGAAAATGTGTTGGTG 59.440 43.478 0.00 0.00 0.00 4.17
3595 3716 3.712016 TTTGGAGGATTGGAATGACGA 57.288 42.857 0.00 0.00 0.00 4.20
3940 4061 8.420222 TCAATTTTGACACCAAATTACATGAGT 58.580 29.630 0.00 0.00 41.43 3.41
3980 4101 7.765695 ATAGTAAGGCACATCAAAATATGGG 57.234 36.000 0.00 0.00 33.15 4.00
4053 4174 9.695526 CAATTGGACATTTCAATGAGAAGTTTA 57.304 29.630 6.53 0.00 39.67 2.01
4101 4222 3.253921 CACCACATGAAAGACTGCAATGA 59.746 43.478 0.00 0.00 0.00 2.57
4192 4313 1.206849 ACCCAACAAGCAACACAAAGG 59.793 47.619 0.00 0.00 0.00 3.11
4241 4362 8.329203 ACAAGAAGTGATACTGGAAAGATTTC 57.671 34.615 0.00 0.00 36.46 2.17
4354 4475 8.633561 TGTGTATATCAACAAGATCTCCTAGTG 58.366 37.037 0.00 0.00 38.19 2.74
4415 4536 8.055279 ACAATTTTTAGTAGTCACATCCATGG 57.945 34.615 4.97 4.97 0.00 3.66
4644 4766 2.627863 TGCACACAACGGATTTATGC 57.372 45.000 0.00 0.00 0.00 3.14
4688 4810 6.828785 ACATTCACATTAACAGGGAGATAACC 59.171 38.462 0.00 0.00 0.00 2.85
4734 4856 8.328758 TCCATACCTGAGATTCAACTTTGTAAT 58.671 33.333 0.00 0.00 0.00 1.89
4793 4915 8.133627 AGTATATGTACACCGTGACTTGTAATC 58.866 37.037 5.28 0.00 33.09 1.75
4806 4928 9.772973 TTGATACATGGAAAGTATATGTACACC 57.227 33.333 0.00 3.58 39.34 4.16
4854 4976 6.591834 CCATAGTTAACCTGCTACATATGCTC 59.408 42.308 1.58 0.00 0.00 4.26
4882 5004 4.589908 AGCATACGAAAATATGGGGATCC 58.410 43.478 1.92 1.92 33.79 3.36
4907 5029 7.822822 TGCAAGGTAAGAAAATAGTAGAACTCC 59.177 37.037 0.00 0.00 0.00 3.85
5074 5196 2.293318 TTGAGACAGATGCCCGGCT 61.293 57.895 11.61 0.00 0.00 5.52
5081 5203 5.954296 ACCATTTTCAGTTGAGACAGATG 57.046 39.130 0.00 0.00 0.00 2.90
5155 5290 8.363029 GCTTGCTACGTATGTTGTTAAAATTTC 58.637 33.333 0.00 0.00 0.00 2.17
5557 5693 1.798223 TGATTTCCTGTCACGCTTTCG 59.202 47.619 0.00 0.00 42.43 3.46
5882 6018 4.501071 CTGATGGCCCAAGAAAGAAATTG 58.499 43.478 0.00 0.00 0.00 2.32
5986 6122 1.247419 TGTGGGGCTTAAATGGCACG 61.247 55.000 0.00 0.00 38.90 5.34
6085 6222 4.520179 TGCAGACAGTAATCAATGATGCT 58.480 39.130 0.00 0.00 35.32 3.79
6197 6335 5.909621 AGCTGACAGATTGTAATTGCATT 57.090 34.783 6.65 0.00 0.00 3.56
6217 6355 4.632538 AAATTGTAAGGCGGTGAATAGC 57.367 40.909 0.00 0.00 0.00 2.97
6221 6359 4.794655 GCAAGAAAATTGTAAGGCGGTGAA 60.795 41.667 0.00 0.00 0.00 3.18
6226 6364 3.244976 CTGGCAAGAAAATTGTAAGGCG 58.755 45.455 0.00 0.00 0.00 5.52
6414 6552 1.542547 CGGTTGCCAGTTAGAACAGGT 60.543 52.381 5.81 0.00 37.82 4.00
6459 6597 7.009815 GCACAAATAATGATTGATGTGTGAAGG 59.990 37.037 15.72 0.00 36.66 3.46
6654 6792 2.540383 AGCATGGACAGGACTTCTACA 58.460 47.619 0.00 0.00 0.00 2.74
6840 6978 1.451028 GCTGCAAGGACCTAGCTGG 60.451 63.158 7.40 0.00 42.93 4.85
7539 7685 1.049251 CCAATTGTTGTACGCGCAAC 58.951 50.000 18.87 18.87 46.36 4.17
7544 7690 5.064707 AGTCATATGTCCAATTGTTGTACGC 59.935 40.000 4.43 0.00 0.00 4.42
7571 7717 3.188254 TGTTGTACGTGCAATCATTCTGG 59.812 43.478 21.92 0.00 0.00 3.86
7680 7829 5.541868 TCAATTACATCATTTGTGTGGGGTT 59.458 36.000 0.00 0.00 39.48 4.11
7707 7856 9.463443 AAGTTTGTAATAATGCAGAAACTGAAC 57.537 29.630 2.81 0.00 32.44 3.18
7735 7884 7.331193 AGTGATACACTACGACAAATTTCCTTC 59.669 37.037 2.43 0.00 43.46 3.46
7789 7938 3.240069 GCAAGCACAACATGATGTTCTC 58.760 45.455 8.03 0.70 38.77 2.87
7892 8041 6.715718 ACACTCGACTAGGCTATACATATGTT 59.284 38.462 14.77 4.83 0.00 2.71
7949 8098 1.260538 CCTGCTAGACCTCCACAGCA 61.261 60.000 0.00 0.00 41.52 4.41
8439 8588 5.641209 TGGCATGCAATTAACAAAACCATAC 59.359 36.000 21.36 0.00 0.00 2.39
8510 8659 7.989741 AGATTACTACATGTAGCAGCTTTGATT 59.010 33.333 28.88 10.86 36.66 2.57
8539 8691 9.153721 CGGTGTCCATATTTGTAAAAAGTACTA 57.846 33.333 0.00 0.00 0.00 1.82
8540 8692 7.879160 TCGGTGTCCATATTTGTAAAAAGTACT 59.121 33.333 0.00 0.00 0.00 2.73
8541 8693 8.031848 TCGGTGTCCATATTTGTAAAAAGTAC 57.968 34.615 0.00 0.00 0.00 2.73
8549 8701 4.954202 AGAGACTCGGTGTCCATATTTGTA 59.046 41.667 6.59 0.00 46.46 2.41
8585 8737 4.603231 AGATCGTTCGTGAGACTAACTC 57.397 45.455 0.00 0.00 45.11 3.01
8586 8738 4.454847 TCAAGATCGTTCGTGAGACTAACT 59.545 41.667 7.86 0.00 41.84 2.24
8587 8739 4.720090 TCAAGATCGTTCGTGAGACTAAC 58.280 43.478 7.86 0.00 41.84 2.34
8685 8844 5.760253 AGCCTAAAACCATCAGTGATAATCG 59.240 40.000 5.03 0.00 0.00 3.34
8741 8901 5.997129 ACAATCCAACAAATCATTCCAAACC 59.003 36.000 0.00 0.00 0.00 3.27
8754 8914 7.386299 GCCAAACATGTAATAACAATCCAACAA 59.614 33.333 0.00 0.00 39.58 2.83
8756 8916 6.034470 CGCCAAACATGTAATAACAATCCAAC 59.966 38.462 0.00 0.00 39.58 3.77
8757 8917 6.096036 CGCCAAACATGTAATAACAATCCAA 58.904 36.000 0.00 0.00 39.58 3.53
8758 8918 5.184096 ACGCCAAACATGTAATAACAATCCA 59.816 36.000 0.00 0.00 39.58 3.41
8759 8919 5.646606 ACGCCAAACATGTAATAACAATCC 58.353 37.500 0.00 0.00 39.58 3.01
8760 8920 7.966204 ACTAACGCCAAACATGTAATAACAATC 59.034 33.333 0.00 0.00 39.58 2.67
8761 8921 7.822658 ACTAACGCCAAACATGTAATAACAAT 58.177 30.769 0.00 0.00 39.58 2.71
8762 8922 7.204496 ACTAACGCCAAACATGTAATAACAA 57.796 32.000 0.00 0.00 39.58 2.83
8763 8923 6.804770 ACTAACGCCAAACATGTAATAACA 57.195 33.333 0.00 0.00 40.69 2.41
8764 8924 9.429600 GATAACTAACGCCAAACATGTAATAAC 57.570 33.333 0.00 0.00 0.00 1.89
8765 8925 9.163899 TGATAACTAACGCCAAACATGTAATAA 57.836 29.630 0.00 0.00 0.00 1.40
8766 8926 8.719560 TGATAACTAACGCCAAACATGTAATA 57.280 30.769 0.00 0.00 0.00 0.98
8767 8927 7.618502 TGATAACTAACGCCAAACATGTAAT 57.381 32.000 0.00 0.00 0.00 1.89
8847 9007 5.613329 ACAAATCATTCCAAACATGCAGTT 58.387 33.333 0.00 0.00 43.89 3.16
8848 9008 5.217978 ACAAATCATTCCAAACATGCAGT 57.782 34.783 0.00 0.00 0.00 4.40
8850 9010 4.755629 CCAACAAATCATTCCAAACATGCA 59.244 37.500 0.00 0.00 0.00 3.96
8851 9011 4.996122 TCCAACAAATCATTCCAAACATGC 59.004 37.500 0.00 0.00 0.00 4.06
8853 9013 7.225725 ACAATCCAACAAATCATTCCAAACAT 58.774 30.769 0.00 0.00 0.00 2.71
8854 9014 6.590068 ACAATCCAACAAATCATTCCAAACA 58.410 32.000 0.00 0.00 0.00 2.83
8855 9015 7.495135 AACAATCCAACAAATCATTCCAAAC 57.505 32.000 0.00 0.00 0.00 2.93
8856 9016 9.790344 AATAACAATCCAACAAATCATTCCAAA 57.210 25.926 0.00 0.00 0.00 3.28
8858 9018 9.868277 GTAATAACAATCCAACAAATCATTCCA 57.132 29.630 0.00 0.00 0.00 3.53
8859 9019 9.868277 TGTAATAACAATCCAACAAATCATTCC 57.132 29.630 0.00 0.00 30.91 3.01
8865 9025 8.257306 GGGATGTGTAATAACAATCCAACAAAT 58.743 33.333 15.32 0.00 40.89 2.32
8869 9029 5.587043 TCGGGATGTGTAATAACAATCCAAC 59.413 40.000 15.32 5.11 40.89 3.77
8870 9030 5.746284 TCGGGATGTGTAATAACAATCCAA 58.254 37.500 15.32 6.26 40.89 3.53
8871 9031 5.360649 TCGGGATGTGTAATAACAATCCA 57.639 39.130 15.32 0.00 40.89 3.41
8872 9032 6.687081 TTTCGGGATGTGTAATAACAATCC 57.313 37.500 9.40 9.40 39.75 3.01
8873 9033 9.581099 AAATTTTCGGGATGTGTAATAACAATC 57.419 29.630 0.00 0.00 37.36 2.67
8877 9037 8.185505 TGCTAAATTTTCGGGATGTGTAATAAC 58.814 33.333 0.00 0.00 0.00 1.89
8881 9041 6.576662 TTGCTAAATTTTCGGGATGTGTAA 57.423 33.333 0.00 0.00 0.00 2.41
8882 9042 6.183360 GGATTGCTAAATTTTCGGGATGTGTA 60.183 38.462 0.00 0.00 0.00 2.90
8883 9043 5.394115 GGATTGCTAAATTTTCGGGATGTGT 60.394 40.000 0.00 0.00 0.00 3.72
8884 9044 5.043248 GGATTGCTAAATTTTCGGGATGTG 58.957 41.667 0.00 0.00 0.00 3.21
8885 9045 4.956075 AGGATTGCTAAATTTTCGGGATGT 59.044 37.500 0.00 0.00 0.00 3.06
8886 9046 5.520376 AGGATTGCTAAATTTTCGGGATG 57.480 39.130 0.00 0.00 0.00 3.51
8887 9047 5.241728 GCTAGGATTGCTAAATTTTCGGGAT 59.758 40.000 0.00 0.00 0.00 3.85
8888 9048 4.578928 GCTAGGATTGCTAAATTTTCGGGA 59.421 41.667 0.00 0.00 0.00 5.14
8890 9050 5.066505 ACTGCTAGGATTGCTAAATTTTCGG 59.933 40.000 0.00 0.00 0.00 4.30
8891 9051 6.124088 ACTGCTAGGATTGCTAAATTTTCG 57.876 37.500 0.00 0.00 0.00 3.46
8981 9540 3.081133 CTCGAACGGTTGGATGCG 58.919 61.111 6.04 0.00 0.00 4.73
9116 9675 6.950842 TGATATTGATTCACTGGAAGACACT 58.049 36.000 0.00 0.00 36.25 3.55
9181 9740 2.789213 TGTCGATCAGATTGGGCAAAA 58.211 42.857 0.00 0.00 0.00 2.44
9185 9744 1.134401 TCCTTGTCGATCAGATTGGGC 60.134 52.381 0.00 0.00 0.00 5.36
9186 9745 2.555199 GTCCTTGTCGATCAGATTGGG 58.445 52.381 0.00 0.00 0.00 4.12
9251 9994 2.159517 GGAGCGCAGAAGTACAAAATGG 60.160 50.000 11.47 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.