AutoCloner

Multiple sequence alignment - TraesCS6B01G208700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G208700	chr6B	100.000	2420	0	0	1	2420	271844541	271842122	0.000000e+00	4470
1	TraesCS6B01G208700	chr6B	91.667	444	37	0	1977	2420	310874842	310875285	1.230000e-172	616
2	TraesCS6B01G208700	chr6B	84.680	359	50	4	873	1226	271191653	271191295	1.060000e-93	353
3	TraesCS6B01G208700	chr4B	94.892	2232	103	4	190	2419	19010705	19012927	0.000000e+00	3480
4	TraesCS6B01G208700	chr4B	97.044	203	6	0	2	204	19010483	19010685	2.300000e-90	342
5	TraesCS6B01G208700	chr2B	93.902	1886	100	4	548	2420	28460758	28462641	0.000000e+00	2832
6	TraesCS6B01G208700	chr2B	78.292	843	144	20	872	1682	711103170	711102335	7.720000e-140	507
7	TraesCS6B01G208700	chr2A	85.402	1144	151	11	1284	2420	241000420	240999286	0.000000e+00	1173
8	TraesCS6B01G208700	chr2A	85.714	1078	137	13	1351	2420	241008201	241007133	0.000000e+00	1122
9	TraesCS6B01G208700	chr2A	84.602	1143	147	19	1284	2420	241009712	241008593	0.000000e+00	1109
10	TraesCS6B01G208700	chr2A	82.474	194	15	5	12	204	401702917	401703092	4.170000e-33	152
11	TraesCS6B01G208700	chr2A	88.800	125	13	1	81	204	403694658	403694782	4.170000e-33	152
12	TraesCS6B01G208700	chr4D	90.559	805	68	5	1263	2063	340809794	340808994	0.000000e+00	1059
13	TraesCS6B01G208700	chr4D	90.062	805	72	5	1263	2063	340823221	340822421	0.000000e+00	1037
14	TraesCS6B01G208700	chr4D	82.915	199	19	6	879	1062	11283144	11282946	5.350000e-37	165
15	TraesCS6B01G208700	chr2D	89.814	805	74	5	1263	2063	481607547	481606747	0.000000e+00	1026
16	TraesCS6B01G208700	chr2D	79.112	833	136	27	879	1682	429292938	429293761	7.610000e-150	540
17	TraesCS6B01G208700	chr3D	89.565	805	76	5	1263	2063	500416126	500415326	0.000000e+00	1014
18	TraesCS6B01G208700	chr3D	78.685	821	137	20	882	1674	183022896	183022086	1.660000e-141	512
19	TraesCS6B01G208700	chr3D	79.109	718	120	14	872	1561	406432492	406433207	3.640000e-128	468
20	TraesCS6B01G208700	chr3D	88.088	319	38	0	972	1290	249280339	249280021	1.760000e-101	379
21	TraesCS6B01G208700	chr3D	87.037	324	42	0	967	1290	249668020	249667697	1.370000e-97	366
22	TraesCS6B01G208700	chr3D	86.728	324	43	0	967	1290	249652663	249652340	6.360000e-96	361
23	TraesCS6B01G208700	chr7B	93.166	439	30	0	1982	2420	25384954	25384516	0.000000e+00	645
24	TraesCS6B01G208700	chr7B	92.290	441	34	0	1980	2420	25367619	25367179	5.680000e-176	627
25	TraesCS6B01G208700	chr7B	82.367	414	58	5	873	1271	654081268	654081681	1.780000e-91	346
26	TraesCS6B01G208700	chr7B	82.126	414	59	1	873	1271	654096678	654097091	8.290000e-90	340
27	TraesCS6B01G208700	chr1D	79.828	813	119	21	898	1682	403596804	403597599	3.520000e-153	551
28	TraesCS6B01G208700	chr1D	79.501	561	83	14	886	1416	239117354	239116796	1.060000e-98	370
29	TraesCS6B01G208700	chr1D	78.819	576	88	17	873	1416	239135290	239134717	8.230000e-95	357
30	TraesCS6B01G208700	chr3A	83.255	424	55	5	882	1290	666048259	666048681	2.270000e-100	375
31	TraesCS6B01G208700	chr4A	82.984	429	54	5	879	1290	258975589	258975163	1.060000e-98	370
32	TraesCS6B01G208700	chr4A	76.671	733	122	30	866	1561	312692714	312693434	6.360000e-96	361
33	TraesCS6B01G208700	chr6D	82.436	427	59	2	872	1282	369084961	369084535	2.290000e-95	359
34	TraesCS6B01G208700	chr1A	80.628	382	65	5	605	979	120848440	120848061	1.090000e-73	287
35	TraesCS6B01G208700	chr3B	82.039	206	15	6	3	204	148669320	148669133	3.220000e-34	156
36	TraesCS6B01G208700	chr3B	81.553	206	16	6	3	204	148556543	148556356	1.500000e-32	150
37	TraesCS6B01G208700	chr3B	81.553	206	16	7	3	204	148592519	148592332	1.500000e-32	150
38	TraesCS6B01G208700	chr3B	81.553	206	16	6	3	204	148634230	148634043	1.500000e-32	150
39	TraesCS6B01G208700	chr3B	81.579	190	16	5	16	204	148684727	148684556	3.240000e-29	139
40	TraesCS6B01G208700	chr3B	80.693	202	17	6	7	204	341403007	341402824	1.170000e-28	137
41	TraesCS6B01G208700	chr3B	80.000	200	20	11	7	203	341418009	341417827	1.950000e-26	130

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G208700	chr6B	271842122	271844541	2419	True	4470.0	4470	100.000	1	2420	1	chr6B.!!$R2	2419
1	TraesCS6B01G208700	chr4B	19010483	19012927	2444	False	1911.0	3480	95.968	2	2419	2	chr4B.!!$F1	2417
2	TraesCS6B01G208700	chr2B	28460758	28462641	1883	False	2832.0	2832	93.902	548	2420	1	chr2B.!!$F1	1872
3	TraesCS6B01G208700	chr2B	711102335	711103170	835	True	507.0	507	78.292	872	1682	1	chr2B.!!$R1	810
4	TraesCS6B01G208700	chr2A	240999286	241000420	1134	True	1173.0	1173	85.402	1284	2420	1	chr2A.!!$R1	1136
5	TraesCS6B01G208700	chr2A	241007133	241009712	2579	True	1115.5	1122	85.158	1284	2420	2	chr2A.!!$R2	1136
6	TraesCS6B01G208700	chr4D	340808994	340809794	800	True	1059.0	1059	90.559	1263	2063	1	chr4D.!!$R2	800
7	TraesCS6B01G208700	chr4D	340822421	340823221	800	True	1037.0	1037	90.062	1263	2063	1	chr4D.!!$R3	800
8	TraesCS6B01G208700	chr2D	481606747	481607547	800	True	1026.0	1026	89.814	1263	2063	1	chr2D.!!$R1	800
9	TraesCS6B01G208700	chr2D	429292938	429293761	823	False	540.0	540	79.112	879	1682	1	chr2D.!!$F1	803
10	TraesCS6B01G208700	chr3D	500415326	500416126	800	True	1014.0	1014	89.565	1263	2063	1	chr3D.!!$R5	800
11	TraesCS6B01G208700	chr3D	183022086	183022896	810	True	512.0	512	78.685	882	1674	1	chr3D.!!$R1	792
12	TraesCS6B01G208700	chr3D	406432492	406433207	715	False	468.0	468	79.109	872	1561	1	chr3D.!!$F1	689
13	TraesCS6B01G208700	chr1D	403596804	403597599	795	False	551.0	551	79.828	898	1682	1	chr1D.!!$F1	784
14	TraesCS6B01G208700	chr1D	239116796	239117354	558	True	370.0	370	79.501	886	1416	1	chr1D.!!$R1	530
15	TraesCS6B01G208700	chr1D	239134717	239135290	573	True	357.0	357	78.819	873	1416	1	chr1D.!!$R2	543
16	TraesCS6B01G208700	chr4A	312692714	312693434	720	False	361.0	361	76.671	866	1561	1	chr4A.!!$F1	695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
947	990	0.033504	AAGACGACGCCAGTGTCAAT	59.966	50.0	11.57	0.0	38.84	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2145	2568	2.294512	CTCGCTCATACAGGCATAGACA	59.705	50.0	0.0	0.0	0.0	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
85	86	3.679824	GGCGTGGCCTATACTTTCTAT	57.320	47.619	3.32	0.00	46.69	1.98
122	123	1.332997	ACGTATTCGGATGTCTCGGTC	59.667	52.381	0.00	0.00	41.85	4.79
125	126	1.035932	ATTCGGATGTCTCGGTCGGT	61.036	55.000	0.00	0.00	0.00	4.69
127	128	2.408022	GGATGTCTCGGTCGGTCG	59.592	66.667	0.00	0.00	0.00	4.79
241	276	6.072175	GGCAATGTGAGTAACCTTCAAATACA	60.072	38.462	0.00	0.00	0.00	2.29
275	310	3.202818	AGATTAGGGGATGTGTGCAATCA	59.797	43.478	0.00	0.00	0.00	2.57
313	348	1.740025	GGAAAGAAAGGCATCCGACTG	59.260	52.381	0.00	0.00	0.00	3.51
337	372	1.338973	GGATCATTGCATGCGTGGATT	59.661	47.619	19.07	0.00	0.00	3.01
559	596	3.533547	CAGCAAGAGATCAGGAGAAAGG	58.466	50.000	0.00	0.00	0.00	3.11
621	658	0.900647	AGGAGGTCCTGTGGAAGACG	60.901	60.000	0.00	0.00	46.55	4.18
622	659	1.079750	GAGGTCCTGTGGAAGACGC	60.080	63.158	0.00	0.00	31.38	5.19
623	660	2.432628	GGTCCTGTGGAAGACGCG	60.433	66.667	3.53	3.53	31.38	6.01
624	661	3.112709	GTCCTGTGGAAGACGCGC	61.113	66.667	5.73	0.00	31.38	6.86
625	662	4.373116	TCCTGTGGAAGACGCGCC	62.373	66.667	5.73	0.00	0.00	6.53
947	990	0.033504	AAGACGACGCCAGTGTCAAT	59.966	50.000	11.57	0.00	38.84	2.57
1122	1201	3.244009	CCATCTACTTCGTCATGCTGGAT	60.244	47.826	0.00	0.00	0.00	3.41
1214	1293	4.925861	GGAGCTCGCAGGGATGCC	62.926	72.222	7.83	0.00	0.00	4.40
1233	1312	4.552365	CCGCGTGCCATGGAGGAT	62.552	66.667	18.40	0.00	41.22	3.24
1234	1313	3.274586	CGCGTGCCATGGAGGATG	61.275	66.667	18.40	4.78	41.22	3.51
1242	1321	0.105593	CCATGGAGGATGGTGAGACG	59.894	60.000	5.56	0.00	46.20	4.18
1243	1322	0.105593	CATGGAGGATGGTGAGACGG	59.894	60.000	0.00	0.00	0.00	4.79
1244	1323	0.032117	ATGGAGGATGGTGAGACGGA	60.032	55.000	0.00	0.00	0.00	4.69
1245	1324	0.684479	TGGAGGATGGTGAGACGGAG	60.684	60.000	0.00	0.00	0.00	4.63
1246	1325	1.439644	GAGGATGGTGAGACGGAGC	59.560	63.158	0.00	0.00	0.00	4.70
1247	1326	1.000993	AGGATGGTGAGACGGAGCT	59.999	57.895	0.00	0.00	0.00	4.09
1248	1327	1.040339	AGGATGGTGAGACGGAGCTC	61.040	60.000	4.71	4.71	35.46	4.09
1249	1328	1.064946	GATGGTGAGACGGAGCTCG	59.935	63.158	7.83	5.83	45.88	5.03
1250	1329	2.945398	GATGGTGAGACGGAGCTCGC	62.945	65.000	7.83	0.00	43.89	5.03
1251	1330	3.444805	GGTGAGACGGAGCTCGCT	61.445	66.667	7.83	4.80	43.24	4.93
1252	1331	2.113433	GGTGAGACGGAGCTCGCTA	61.113	63.158	7.83	0.00	43.24	4.26
1253	1332	1.353804	GTGAGACGGAGCTCGCTAG	59.646	63.158	7.83	1.60	43.89	3.42
1254	1333	1.820056	TGAGACGGAGCTCGCTAGG	60.820	63.158	7.83	0.00	43.89	3.02
1255	1334	1.524165	GAGACGGAGCTCGCTAGGA	60.524	63.158	7.83	0.00	43.89	2.94
1256	1335	0.887387	GAGACGGAGCTCGCTAGGAT	60.887	60.000	7.83	0.00	43.89	3.24
1257	1336	1.169661	AGACGGAGCTCGCTAGGATG	61.170	60.000	7.83	0.00	43.89	3.51
1258	1337	1.152943	ACGGAGCTCGCTAGGATGA	60.153	57.895	7.83	0.00	43.89	2.92
1259	1338	1.284408	CGGAGCTCGCTAGGATGAC	59.716	63.158	7.83	0.00	0.00	3.06
1260	1339	1.284408	GGAGCTCGCTAGGATGACG	59.716	63.158	7.83	0.00	0.00	4.35
1261	1340	1.371145	GAGCTCGCTAGGATGACGC	60.371	63.158	0.00	0.00	0.00	5.19
1262	1341	1.791103	GAGCTCGCTAGGATGACGCT	61.791	60.000	0.00	0.00	0.00	5.07
1263	1342	1.371145	GCTCGCTAGGATGACGCTC	60.371	63.158	0.00	0.00	0.00	5.03
1264	1343	1.082431	CTCGCTAGGATGACGCTCG	60.082	63.158	0.00	0.00	0.00	5.03
1265	1344	1.777030	CTCGCTAGGATGACGCTCGT	61.777	60.000	0.00	0.00	0.00	4.18
1266	1345	1.369448	CGCTAGGATGACGCTCGTC	60.369	63.158	14.77	14.77	44.77	4.20
1293	1372	4.785453	GTCAAGCTGGAGCCCGGG	62.785	72.222	19.09	19.09	43.38	5.73
1315	1398	2.685017	TGGAGCTCGCAGGGATGT	60.685	61.111	7.83	0.00	0.00	3.06
1359	1544	2.045242	ACGGAGCTCGCTAGGACA	60.045	61.111	7.83	0.00	43.89	4.02
1603	2012	0.615331	ATGAAGATGACACACGCCCT	59.385	50.000	0.00	0.00	0.00	5.19
1610	2019	1.116536	TGACACACGCCCTGGTTCTA	61.117	55.000	0.00	0.00	0.00	2.10
1719	2128	1.780309	TCCTTTGTCTTGGTGGACCAT	59.220	47.619	0.00	0.00	46.97	3.55
1875	2284	3.260632	TCCATGATGTCACCTTTCTTCGA	59.739	43.478	0.00	0.00	0.00	3.71
1990	2412	4.215742	CGGGCGGCGTGATCCTTA	62.216	66.667	9.37	0.00	0.00	2.69
1997	2419	2.014128	CGGCGTGATCCTTATTTTGGT	58.986	47.619	0.00	0.00	0.00	3.67
2027	2449	4.034652	CGAATACGGTGTCTAGCCAAGAC	61.035	52.174	9.37	9.37	44.06	3.01
2120	2543	1.513586	GTCGTAACCTCGGCGTCTG	60.514	63.158	6.85	0.00	0.00	3.51
2145	2568	2.111043	CGAGGCACCAACCACACT	59.889	61.111	0.00	0.00	0.00	3.55
2147	2570	1.152963	GAGGCACCAACCACACTGT	60.153	57.895	0.00	0.00	0.00	3.55
2155	2578	1.003580	CCAACCACACTGTCTATGCCT	59.996	52.381	0.00	0.00	0.00	4.75
2188	2611	1.671845	GTTGGTTTTACACTGACGCCA	59.328	47.619	0.00	0.00	0.00	5.69
2234	2659	2.855014	AACCCCTTGCGTACCCCA	60.855	61.111	0.00	0.00	0.00	4.96
2235	2660	2.814913	GAACCCCTTGCGTACCCCAG	62.815	65.000	0.00	0.00	0.00	4.45
2349	4218	4.778143	GGCGAGGGCGAACATGGT	62.778	66.667	0.00	0.00	41.24	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
127	128	2.100631	ATACACACGCGAGCTTGCC	61.101	57.895	20.46	2.90	0.00	4.52
241	276	7.398618	CACATCCCCTAATCTCATGTACTCTAT	59.601	40.741	0.00	0.00	0.00	1.98
259	294	3.290710	ACTTATGATTGCACACATCCCC	58.709	45.455	7.88	0.00	0.00	4.81
481	516	1.101635	TATGAGCTGAGCGCCGTACT	61.102	55.000	2.29	0.00	40.39	2.73
515	550	7.388224	GCTGCTAGGTCTCGCTACATATATATA	59.612	40.741	0.00	0.00	0.00	0.86
559	596	2.933834	ACCTGGGTACACTGCCCC	60.934	66.667	0.00	0.00	45.49	5.80
683	726	0.320374	ATGGCTTGTTCTTCGTCCGA	59.680	50.000	0.00	0.00	0.00	4.55
894	937	2.672651	CCATCCACCGCAGCAACA	60.673	61.111	0.00	0.00	0.00	3.33
947	990	0.966875	ATGGCGCCAGCTTGATGAAA	60.967	50.000	35.36	6.16	44.37	2.69
1122	1201	1.451567	CACGCCTCCGTCCTCTAGA	60.452	63.158	0.00	0.00	46.39	2.43
1216	1295	4.552365	ATCCTCCATGGCACGCGG	62.552	66.667	12.47	0.00	35.26	6.46
1217	1296	3.274586	CATCCTCCATGGCACGCG	61.275	66.667	6.96	3.53	35.26	6.01
1218	1297	2.903855	CCATCCTCCATGGCACGC	60.904	66.667	6.96	0.00	46.18	5.34
1224	1303	0.105593	CCGTCTCACCATCCTCCATG	59.894	60.000	0.00	0.00	0.00	3.66
1225	1304	0.032117	TCCGTCTCACCATCCTCCAT	60.032	55.000	0.00	0.00	0.00	3.41
1226	1305	0.684479	CTCCGTCTCACCATCCTCCA	60.684	60.000	0.00	0.00	0.00	3.86
1227	1306	2.022240	GCTCCGTCTCACCATCCTCC	62.022	65.000	0.00	0.00	0.00	4.30
1228	1307	1.040339	AGCTCCGTCTCACCATCCTC	61.040	60.000	0.00	0.00	0.00	3.71
1229	1308	1.000993	AGCTCCGTCTCACCATCCT	59.999	57.895	0.00	0.00	0.00	3.24
1230	1309	1.439644	GAGCTCCGTCTCACCATCC	59.560	63.158	0.87	0.00	33.41	3.51
1231	1310	1.064946	CGAGCTCCGTCTCACCATC	59.935	63.158	8.47	0.00	33.41	3.51
1232	1311	3.069980	GCGAGCTCCGTCTCACCAT	62.070	63.158	8.47	0.00	41.15	3.55
1233	1312	2.814913	TAGCGAGCTCCGTCTCACCA	62.815	60.000	8.47	0.00	41.15	4.17
1234	1313	2.054140	CTAGCGAGCTCCGTCTCACC	62.054	65.000	8.47	0.00	41.15	4.02
1235	1314	1.353804	CTAGCGAGCTCCGTCTCAC	59.646	63.158	8.47	0.00	41.15	3.51
1236	1315	1.820056	CCTAGCGAGCTCCGTCTCA	60.820	63.158	8.47	0.00	41.15	3.27
1237	1316	0.887387	ATCCTAGCGAGCTCCGTCTC	60.887	60.000	8.47	0.00	41.15	3.36
1238	1317	1.149627	ATCCTAGCGAGCTCCGTCT	59.850	57.895	8.47	5.62	41.15	4.18
1239	1318	1.167155	TCATCCTAGCGAGCTCCGTC	61.167	60.000	8.47	0.00	41.15	4.79
1240	1319	1.152943	TCATCCTAGCGAGCTCCGT	60.153	57.895	8.47	0.00	41.15	4.69
1241	1320	1.284408	GTCATCCTAGCGAGCTCCG	59.716	63.158	8.47	4.62	42.21	4.63
1242	1321	1.284408	CGTCATCCTAGCGAGCTCC	59.716	63.158	8.47	0.68	0.00	4.70
1243	1322	1.371145	GCGTCATCCTAGCGAGCTC	60.371	63.158	2.73	2.73	0.00	4.09
1244	1323	1.791103	GAGCGTCATCCTAGCGAGCT	61.791	60.000	2.25	2.25	36.06	4.09
1245	1324	1.371145	GAGCGTCATCCTAGCGAGC	60.371	63.158	0.00	0.00	35.78	5.03
1246	1325	1.082431	CGAGCGTCATCCTAGCGAG	60.082	63.158	0.00	0.00	35.78	5.03
1247	1326	1.773054	GACGAGCGTCATCCTAGCGA	61.773	60.000	17.21	0.00	44.02	4.93
1248	1327	1.369448	GACGAGCGTCATCCTAGCG	60.369	63.158	17.21	0.00	44.02	4.26
1249	1328	1.369448	CGACGAGCGTCATCCTAGC	60.369	63.158	21.09	0.00	44.77	3.42
1250	1329	4.903730	CGACGAGCGTCATCCTAG	57.096	61.111	21.09	1.95	44.77	3.02
1260	1339	2.327081	TGACAAAGTAGACGACGAGC	57.673	50.000	0.00	0.00	0.00	5.03
1261	1340	2.657372	GCTTGACAAAGTAGACGACGAG	59.343	50.000	0.00	0.00	35.69	4.18
1262	1341	2.292569	AGCTTGACAAAGTAGACGACGA	59.707	45.455	0.00	0.00	35.69	4.20
1263	1342	2.405357	CAGCTTGACAAAGTAGACGACG	59.595	50.000	0.00	0.00	35.69	5.12
1264	1343	2.731976	CCAGCTTGACAAAGTAGACGAC	59.268	50.000	0.00	0.00	35.69	4.34
1265	1344	2.626266	TCCAGCTTGACAAAGTAGACGA	59.374	45.455	0.00	0.00	35.69	4.20
1266	1345	2.989840	CTCCAGCTTGACAAAGTAGACG	59.010	50.000	0.00	0.00	35.69	4.18
1275	1354	4.020617	CCGGGCTCCAGCTTGACA	62.021	66.667	0.00	0.00	41.70	3.58
1329	1412	1.826054	CTCCGTCTCGCCATCCTCT	60.826	63.158	0.00	0.00	0.00	3.69
1572	1980	0.537188	ATCTTCATGGACTCCGCGTT	59.463	50.000	4.92	0.00	0.00	4.84
1603	2012	0.250124	CTGTGTTGCGGGTAGAACCA	60.250	55.000	0.00	0.00	41.02	3.67
1610	2019	3.560251	AGGCTCTGTGTTGCGGGT	61.560	61.111	0.00	0.00	0.00	5.28
1719	2128	2.103538	GCTGGACGCCGTATTCGA	59.896	61.111	0.00	0.00	39.71	3.71
1821	2230	2.648304	TGATACCCCGTCCTAGCTAGAT	59.352	50.000	22.70	4.67	0.00	1.98
1875	2284	3.737172	GGCAAAGCATCGCGGTGT	61.737	61.111	22.24	4.83	0.00	4.16
2120	2543	2.927580	TTGGTGCCTCGTCTCGACC	61.928	63.158	0.00	0.00	0.00	4.79
2145	2568	2.294512	CTCGCTCATACAGGCATAGACA	59.705	50.000	0.00	0.00	0.00	3.41
2147	2570	2.294512	CACTCGCTCATACAGGCATAGA	59.705	50.000	0.00	0.00	0.00	1.98
2155	2578	2.831685	AACCAACACTCGCTCATACA	57.168	45.000	0.00	0.00	0.00	2.29
2188	2611	3.822940	CGGGAGTACTCTTATGGAGACT	58.177	50.000	21.88	4.34	44.45	3.24
2349	4218	2.429971	TCAAAACATGGCTTTGTGCTGA	59.570	40.909	17.26	1.38	42.39	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.