Multiple sequence alignment - TraesCS6B01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G207000 chr6B 100.000 3575 0 0 1 3575 261451631 261455205 0.000000e+00 6602.0
1 TraesCS6B01G207000 chr6B 100.000 49 0 0 3527 3575 261460300 261460348 1.370000e-14 91.6
2 TraesCS6B01G207000 chr6D 96.748 2983 42 21 3 2963 148481248 148484197 0.000000e+00 4920.0
3 TraesCS6B01G207000 chr6D 100.000 49 0 0 2889 2937 148484074 148484122 1.370000e-14 91.6
4 TraesCS6B01G207000 chr6A 95.057 2913 60 34 3 2888 199016661 199013806 0.000000e+00 4505.0
5 TraesCS6B01G207000 chr6A 94.737 76 2 2 2889 2963 199013854 199013780 2.260000e-22 117.0
6 TraesCS6B01G207000 chr7D 83.110 1492 250 2 1077 2567 451187824 451186334 0.000000e+00 1358.0
7 TraesCS6B01G207000 chr7D 92.254 426 29 4 2956 3378 189435815 189435391 5.110000e-168 601.0
8 TraesCS6B01G207000 chr7D 89.462 465 40 9 2956 3419 384068163 384067707 2.390000e-161 579.0
9 TraesCS6B01G207000 chr7D 75.306 409 90 10 2059 2460 166513418 166513014 6.090000e-43 185.0
10 TraesCS6B01G207000 chr7D 75.783 351 68 16 1020 1363 400941801 400942141 1.030000e-35 161.0
11 TraesCS6B01G207000 chr7B 82.691 1531 252 10 1041 2567 470837021 470835500 0.000000e+00 1347.0
12 TraesCS6B01G207000 chr7B 95.965 570 22 1 2955 3524 742264928 742265496 0.000000e+00 924.0
13 TraesCS6B01G207000 chr7B 75.430 407 93 7 2059 2460 130746432 130746028 1.310000e-44 191.0
14 TraesCS6B01G207000 chr7A 82.290 1502 258 6 1071 2565 545934342 545935842 0.000000e+00 1293.0
15 TraesCS6B01G207000 chr7A 76.284 409 86 10 2059 2460 167903790 167903386 1.300000e-49 207.0
16 TraesCS6B01G207000 chr4B 91.783 572 46 1 2956 3527 622317378 622316808 0.000000e+00 795.0
17 TraesCS6B01G207000 chr4B 92.417 422 31 1 2956 3377 451907026 451906606 5.110000e-168 601.0
18 TraesCS6B01G207000 chr4B 74.507 608 145 10 1868 2470 502962226 502962828 4.580000e-64 255.0
19 TraesCS6B01G207000 chr3D 92.601 419 27 3 2956 3371 134847073 134846656 1.840000e-167 599.0
20 TraesCS6B01G207000 chr3D 92.754 414 28 2 2956 3368 596699473 596699885 6.610000e-167 597.0
21 TraesCS6B01G207000 chr3D 75.429 350 71 14 1020 1363 255526042 255526382 4.780000e-34 156.0
22 TraesCS6B01G207000 chrUn 89.871 464 42 5 2955 3415 108425315 108425776 3.070000e-165 592.0
23 TraesCS6B01G207000 chrUn 100.000 49 0 0 3527 3575 477362595 477362547 1.370000e-14 91.6
24 TraesCS6B01G207000 chr2D 89.201 463 46 4 2955 3415 420561502 420561962 3.100000e-160 575.0
25 TraesCS6B01G207000 chr1D 74.064 1469 333 44 1020 2467 474375085 474376526 3.120000e-155 558.0
26 TraesCS6B01G207000 chr1A 73.573 1472 338 46 1028 2476 568730247 568728804 1.900000e-142 516.0
27 TraesCS6B01G207000 chr3B 100.000 49 0 0 3527 3575 467062606 467062558 1.370000e-14 91.6
28 TraesCS6B01G207000 chr3B 97.959 49 1 0 3527 3575 467067747 467067699 6.360000e-13 86.1
29 TraesCS6B01G207000 chr1B 100.000 49 0 0 3527 3575 49650583 49650535 1.370000e-14 91.6
30 TraesCS6B01G207000 chr1B 100.000 49 0 0 3527 3575 49655722 49655674 1.370000e-14 91.6
31 TraesCS6B01G207000 chr2B 100.000 47 0 0 3527 3573 685795440 685795486 1.770000e-13 87.9
32 TraesCS6B01G207000 chr2B 97.959 49 0 1 3527 3575 685800583 685800630 2.290000e-12 84.2
33 TraesCS6B01G207000 chr4A 93.878 49 3 0 3527 3575 559265688 559265736 1.380000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G207000 chr6B 261451631 261455205 3574 False 6602.0 6602 100.000 1 3575 1 chr6B.!!$F1 3574
1 TraesCS6B01G207000 chr6D 148481248 148484197 2949 False 2505.8 4920 98.374 3 2963 2 chr6D.!!$F1 2960
2 TraesCS6B01G207000 chr6A 199013780 199016661 2881 True 2311.0 4505 94.897 3 2963 2 chr6A.!!$R1 2960
3 TraesCS6B01G207000 chr7D 451186334 451187824 1490 True 1358.0 1358 83.110 1077 2567 1 chr7D.!!$R4 1490
4 TraesCS6B01G207000 chr7B 470835500 470837021 1521 True 1347.0 1347 82.691 1041 2567 1 chr7B.!!$R2 1526
5 TraesCS6B01G207000 chr7B 742264928 742265496 568 False 924.0 924 95.965 2955 3524 1 chr7B.!!$F1 569
6 TraesCS6B01G207000 chr7A 545934342 545935842 1500 False 1293.0 1293 82.290 1071 2565 1 chr7A.!!$F1 1494
7 TraesCS6B01G207000 chr4B 622316808 622317378 570 True 795.0 795 91.783 2956 3527 1 chr4B.!!$R2 571
8 TraesCS6B01G207000 chr4B 502962226 502962828 602 False 255.0 255 74.507 1868 2470 1 chr4B.!!$F1 602
9 TraesCS6B01G207000 chr1D 474375085 474376526 1441 False 558.0 558 74.064 1020 2467 1 chr1D.!!$F1 1447
10 TraesCS6B01G207000 chr1A 568728804 568730247 1443 True 516.0 516 73.573 1028 2476 1 chr1A.!!$R1 1448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 507 0.106918 TGGGCCACCACGATTATTCC 60.107 55.0 0.0 0.0 43.37 3.01 F
539 560 0.116541 TCCGTTTCCCTTCTCCTCCT 59.883 55.0 0.0 0.0 0.00 3.69 F
594 621 0.450184 GTCAGGAGAGAGACGAGTGC 59.550 60.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1535 2.467880 GGAGGGATGTAAGTGTCCTCA 58.532 52.381 9.49 0.0 44.17 3.86 R
1761 1814 3.505293 GCAAATCCTTGGCCAGATCTATC 59.495 47.826 5.11 0.0 32.76 2.08 R
2783 2845 2.045340 CGGTTTCGGGGCCAAGAT 60.045 61.111 4.39 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 230 2.651361 CACCACGTTCTCTCCGCT 59.349 61.111 0.00 0.00 0.00 5.52
490 507 0.106918 TGGGCCACCACGATTATTCC 60.107 55.000 0.00 0.00 43.37 3.01
532 553 2.038837 CCGGCTTCCGTTTCCCTTC 61.039 63.158 4.47 0.00 46.80 3.46
533 554 1.003718 CGGCTTCCGTTTCCCTTCT 60.004 57.895 0.00 0.00 42.73 2.85
534 555 1.019805 CGGCTTCCGTTTCCCTTCTC 61.020 60.000 0.00 0.00 42.73 2.87
535 556 0.677098 GGCTTCCGTTTCCCTTCTCC 60.677 60.000 0.00 0.00 0.00 3.71
536 557 0.325272 GCTTCCGTTTCCCTTCTCCT 59.675 55.000 0.00 0.00 0.00 3.69
537 558 1.676314 GCTTCCGTTTCCCTTCTCCTC 60.676 57.143 0.00 0.00 0.00 3.71
538 559 0.981943 TTCCGTTTCCCTTCTCCTCC 59.018 55.000 0.00 0.00 0.00 4.30
539 560 0.116541 TCCGTTTCCCTTCTCCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
540 561 0.537653 CCGTTTCCCTTCTCCTCCTC 59.462 60.000 0.00 0.00 0.00 3.71
593 620 1.091537 GGTCAGGAGAGAGACGAGTG 58.908 60.000 0.00 0.00 35.63 3.51
594 621 0.450184 GTCAGGAGAGAGACGAGTGC 59.550 60.000 0.00 0.00 0.00 4.40
595 622 1.021920 TCAGGAGAGAGACGAGTGCG 61.022 60.000 0.00 0.00 44.79 5.34
596 623 1.021920 CAGGAGAGAGACGAGTGCGA 61.022 60.000 0.00 0.00 41.64 5.10
782 822 2.118732 TGGACTGCCTCGTGGGTA 59.881 61.111 5.54 0.00 37.43 3.69
783 823 1.534476 TGGACTGCCTCGTGGGTAA 60.534 57.895 5.54 0.00 37.43 2.85
796 836 3.951765 GGTAACCGAGGGAGGGAG 58.048 66.667 0.00 0.00 35.02 4.30
797 837 1.761271 GGTAACCGAGGGAGGGAGG 60.761 68.421 0.00 0.00 35.02 4.30
798 838 1.761271 GTAACCGAGGGAGGGAGGG 60.761 68.421 0.00 0.00 35.02 4.30
799 839 1.937528 TAACCGAGGGAGGGAGGGA 60.938 63.158 0.00 0.00 35.02 4.20
800 840 1.946063 TAACCGAGGGAGGGAGGGAG 61.946 65.000 0.00 0.00 35.02 4.30
801 841 4.548513 CCGAGGGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
802 842 4.548513 CGAGGGAGGGAGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
918 961 9.650714 AATTTACTAGGGGTTAAAACTTTCAGT 57.349 29.630 0.00 0.00 0.00 3.41
1350 1403 0.801251 CCGTCTACCTCGTCGACTTT 59.199 55.000 14.70 0.00 0.00 2.66
2716 2777 0.488220 TGGTACAGAGGGGTGTGGTA 59.512 55.000 0.00 0.00 31.46 3.25
2718 2779 1.485066 GGTACAGAGGGGTGTGGTATG 59.515 57.143 0.00 0.00 31.46 2.39
2783 2845 2.301583 TGTGTTCCATGTGGATCGAGAA 59.698 45.455 1.98 0.00 44.98 2.87
2784 2846 3.055167 TGTGTTCCATGTGGATCGAGAAT 60.055 43.478 1.98 0.00 44.98 2.40
2785 2847 3.557595 GTGTTCCATGTGGATCGAGAATC 59.442 47.826 1.98 0.00 44.98 2.52
2787 2849 4.080919 TGTTCCATGTGGATCGAGAATCTT 60.081 41.667 1.98 0.00 44.98 2.40
2789 2851 3.136763 CCATGTGGATCGAGAATCTTGG 58.863 50.000 0.00 0.00 37.39 3.61
2791 2853 1.134401 TGTGGATCGAGAATCTTGGCC 60.134 52.381 0.00 0.00 34.56 5.36
2792 2854 0.469917 TGGATCGAGAATCTTGGCCC 59.530 55.000 0.00 0.56 34.56 5.80
2793 2855 0.250510 GGATCGAGAATCTTGGCCCC 60.251 60.000 0.00 0.00 34.56 5.80
2794 2856 0.601311 GATCGAGAATCTTGGCCCCG 60.601 60.000 0.00 0.00 0.00 5.73
2795 2857 1.048724 ATCGAGAATCTTGGCCCCGA 61.049 55.000 0.00 0.00 0.00 5.14
2796 2858 1.220749 CGAGAATCTTGGCCCCGAA 59.779 57.895 0.00 0.00 0.00 4.30
2797 2859 0.392461 CGAGAATCTTGGCCCCGAAA 60.392 55.000 0.00 0.00 0.00 3.46
2865 2931 2.890311 TGATTTGTTCCGAATGTTGGCT 59.110 40.909 0.00 0.00 0.00 4.75
2918 2984 1.173043 GTTCCGAATGTTGGCCATCA 58.827 50.000 18.62 18.62 31.75 3.07
3040 3106 2.939103 GGTAGGATACGTGTAGTGTCGT 59.061 50.000 0.00 0.00 44.28 4.34
3078 3144 6.790461 TGTACCCTTGGCCTCTTATATATGAA 59.210 38.462 3.32 0.00 0.00 2.57
3115 3181 7.280876 ACGTTGTAACCTATGACGACTAGATAA 59.719 37.037 0.00 0.00 37.20 1.75
3121 3187 5.996513 ACCTATGACGACTAGATAACGACAT 59.003 40.000 17.29 17.29 42.35 3.06
3207 3273 1.153628 GAGCGCCCGTAGTCATTGT 60.154 57.895 2.29 0.00 0.00 2.71
3248 3314 3.810941 TCGCTGAACCTCGTTAACAAATT 59.189 39.130 6.39 0.00 0.00 1.82
3280 3346 5.284079 GTCATTGTCTGTGATTGCTTGTTT 58.716 37.500 0.00 0.00 0.00 2.83
3321 3387 6.256321 GCGTACCTCGGATTTATTCTAACAAA 59.744 38.462 0.00 0.00 40.26 2.83
3375 3441 4.707448 GTCTGGTTGATCTAGAAGAGGTGA 59.293 45.833 0.00 0.00 35.50 4.02
3389 3455 5.247110 AGAAGAGGTGAAGATACTGCAGAAA 59.753 40.000 23.35 8.48 0.00 2.52
3425 3491 2.404923 TGGAATCGGAAAATACGGCA 57.595 45.000 0.00 0.00 0.00 5.69
3533 3599 2.356553 GGCAACGCGGTGTCAGTA 60.357 61.111 26.29 0.00 0.00 2.74
3534 3600 2.664436 GGCAACGCGGTGTCAGTAC 61.664 63.158 26.29 6.22 0.00 2.73
3535 3601 1.663702 GCAACGCGGTGTCAGTACT 60.664 57.895 27.13 0.00 0.00 2.73
3536 3602 1.886861 GCAACGCGGTGTCAGTACTG 61.887 60.000 27.13 17.17 0.00 2.74
3537 3603 1.663702 AACGCGGTGTCAGTACTGC 60.664 57.895 18.45 13.34 46.86 4.40
3540 3606 3.031660 GCGGTGTCAGTACTGCTAC 57.968 57.895 18.45 17.24 46.81 3.58
3541 3607 0.797249 GCGGTGTCAGTACTGCTACG 60.797 60.000 18.45 18.34 46.81 3.51
3542 3608 0.797249 CGGTGTCAGTACTGCTACGC 60.797 60.000 18.45 17.11 0.00 4.42
3543 3609 0.526662 GGTGTCAGTACTGCTACGCT 59.473 55.000 18.45 0.00 0.00 5.07
3544 3610 1.618861 GTGTCAGTACTGCTACGCTG 58.381 55.000 18.45 0.00 0.00 5.18
3545 3611 1.199327 GTGTCAGTACTGCTACGCTGA 59.801 52.381 18.45 0.00 35.85 4.26
3546 3612 1.883926 TGTCAGTACTGCTACGCTGAA 59.116 47.619 18.45 0.00 39.33 3.02
3547 3613 2.095212 TGTCAGTACTGCTACGCTGAAG 60.095 50.000 18.45 0.00 39.33 3.02
3548 3614 1.472878 TCAGTACTGCTACGCTGAAGG 59.527 52.381 18.45 0.00 35.36 3.46
3549 3615 1.202582 CAGTACTGCTACGCTGAAGGT 59.797 52.381 10.54 0.00 0.00 3.50
3550 3616 1.893801 AGTACTGCTACGCTGAAGGTT 59.106 47.619 0.00 0.00 0.00 3.50
3551 3617 1.993370 GTACTGCTACGCTGAAGGTTG 59.007 52.381 0.00 0.00 0.00 3.77
3552 3618 0.951040 ACTGCTACGCTGAAGGTTGC 60.951 55.000 0.00 0.00 36.81 4.17
3553 3619 0.950555 CTGCTACGCTGAAGGTTGCA 60.951 55.000 1.60 1.60 42.28 4.08
3554 3620 1.227999 TGCTACGCTGAAGGTTGCAC 61.228 55.000 0.00 0.00 40.29 4.57
3555 3621 1.912371 GCTACGCTGAAGGTTGCACC 61.912 60.000 0.00 0.00 38.99 5.01
3556 3622 0.602638 CTACGCTGAAGGTTGCACCA 60.603 55.000 7.86 0.00 41.95 4.17
3557 3623 0.602638 TACGCTGAAGGTTGCACCAG 60.603 55.000 7.86 0.00 41.95 4.00
3558 3624 2.647297 GCTGAAGGTTGCACCAGC 59.353 61.111 7.86 0.00 41.95 4.85
3568 3634 2.280797 GCACCAGCACTGACGGAA 60.281 61.111 0.00 0.00 41.58 4.30
3569 3635 2.320587 GCACCAGCACTGACGGAAG 61.321 63.158 0.00 0.00 41.58 3.46
3570 3636 2.996168 GCACCAGCACTGACGGAAGT 62.996 60.000 0.00 0.00 45.10 3.01
3571 3637 3.625318 GCACCAGCACTGACGGAAGTA 62.625 57.143 0.00 0.00 43.15 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 230 1.218844 GGAGCTGGGGTATGGGTTTA 58.781 55.000 0.00 0.00 0.00 2.01
247 259 1.284982 GACAGCTGTGCGTGATTCGT 61.285 55.000 27.27 0.00 42.13 3.85
490 507 1.348064 TAATAGATGGCACGAGGGGG 58.652 55.000 0.00 0.00 0.00 5.40
532 553 4.179599 GGGGAGGGGGAGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
535 556 4.179599 GAGGGGGAGGGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
595 622 3.191539 CTTCTTCTGGCGCCGCTC 61.192 66.667 23.90 0.00 0.00 5.03
596 623 4.767255 CCTTCTTCTGGCGCCGCT 62.767 66.667 23.90 0.00 0.00 5.52
745 785 6.379133 AGTCCACGGCCGATAAGAATAATATA 59.621 38.462 35.90 0.00 0.00 0.86
746 786 5.187186 AGTCCACGGCCGATAAGAATAATAT 59.813 40.000 35.90 0.00 0.00 1.28
754 794 1.883084 GCAGTCCACGGCCGATAAG 60.883 63.158 35.90 17.89 0.00 1.73
782 822 3.281787 TCCCTCCCTCCCTCGGTT 61.282 66.667 0.00 0.00 0.00 4.44
783 823 3.756783 CTCCCTCCCTCCCTCGGT 61.757 72.222 0.00 0.00 0.00 4.69
795 835 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
796 836 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
797 837 2.019272 TACCTCCCTCCCTCCCTCC 61.019 68.421 0.00 0.00 0.00 4.30
798 838 1.544703 CTACCTCCCTCCCTCCCTC 59.455 68.421 0.00 0.00 0.00 4.30
799 839 2.021652 CCTACCTCCCTCCCTCCCT 61.022 68.421 0.00 0.00 0.00 4.20
800 840 2.615773 CCTACCTCCCTCCCTCCC 59.384 72.222 0.00 0.00 0.00 4.30
801 841 2.122769 GCCTACCTCCCTCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
802 842 2.522193 CGCCTACCTCCCTCCCTC 60.522 72.222 0.00 0.00 0.00 4.30
918 961 2.435422 TCAAAATGCGAGATCTGGCAA 58.565 42.857 32.06 15.58 46.80 4.52
1482 1535 2.467880 GGAGGGATGTAAGTGTCCTCA 58.532 52.381 9.49 0.00 44.17 3.86
1761 1814 3.505293 GCAAATCCTTGGCCAGATCTATC 59.495 47.826 5.11 0.00 32.76 2.08
2783 2845 2.045340 CGGTTTCGGGGCCAAGAT 60.045 61.111 4.39 0.00 0.00 2.40
2784 2846 2.340673 TTTCGGTTTCGGGGCCAAGA 62.341 55.000 4.39 0.27 36.95 3.02
2785 2847 1.862602 CTTTCGGTTTCGGGGCCAAG 61.863 60.000 4.39 0.00 36.95 3.61
2787 2849 2.281900 CTTTCGGTTTCGGGGCCA 60.282 61.111 4.39 0.00 36.95 5.36
2789 2851 2.032987 TCCTTTCGGTTTCGGGGC 59.967 61.111 0.00 0.00 36.95 5.80
2791 2853 0.887387 TTGCTCCTTTCGGTTTCGGG 60.887 55.000 0.00 0.00 36.95 5.14
2792 2854 0.237498 GTTGCTCCTTTCGGTTTCGG 59.763 55.000 0.00 0.00 36.95 4.30
2793 2855 1.069906 CAGTTGCTCCTTTCGGTTTCG 60.070 52.381 0.00 0.00 37.82 3.46
2794 2856 1.335051 GCAGTTGCTCCTTTCGGTTTC 60.335 52.381 0.00 0.00 38.21 2.78
2795 2857 0.668535 GCAGTTGCTCCTTTCGGTTT 59.331 50.000 0.00 0.00 38.21 3.27
2796 2858 1.507141 CGCAGTTGCTCCTTTCGGTT 61.507 55.000 2.29 0.00 39.32 4.44
2797 2859 1.961277 CGCAGTTGCTCCTTTCGGT 60.961 57.895 2.29 0.00 39.32 4.69
2865 2931 4.082949 CCGACAGGTTAGCACGATATGATA 60.083 45.833 0.00 0.00 0.00 2.15
2918 2984 2.950309 AGACGACAGGTTAGCACGATAT 59.050 45.455 0.00 0.00 0.00 1.63
2994 3060 2.092646 ACTACAACACCAAGTCCAAGCA 60.093 45.455 0.00 0.00 0.00 3.91
3040 3106 0.881118 GGGTACAACGTGTCCGACTA 59.119 55.000 0.00 0.00 37.88 2.59
3078 3144 0.981183 TTACAACGTGGGATGCCTCT 59.019 50.000 4.35 0.00 0.00 3.69
3085 3151 2.094597 CGTCATAGGTTACAACGTGGGA 60.095 50.000 0.00 0.00 0.00 4.37
3165 3231 0.528924 CCGAGATACCACAACACCGA 59.471 55.000 0.00 0.00 0.00 4.69
3207 3273 4.517934 CTCGCCTACTCCCCGGGA 62.518 72.222 26.32 5.87 0.00 5.14
3230 3296 4.575645 ACCGAAATTTGTTAACGAGGTTCA 59.424 37.500 15.56 0.00 0.00 3.18
3248 3314 1.067974 ACAGACAATGACGACACCGAA 59.932 47.619 0.00 0.00 39.50 4.30
3280 3346 2.893449 CGCGATCGATCCACCGAGA 61.893 63.158 21.57 0.00 42.21 4.04
3321 3387 5.077564 TCGTAACCTAGCTCATGATACCAT 58.922 41.667 0.00 0.00 0.00 3.55
3375 3441 4.450053 GCCTGATCTTTCTGCAGTATCTT 58.550 43.478 14.67 0.00 0.00 2.40
3389 3455 3.219928 ATCGCCGACGCCTGATCT 61.220 61.111 0.00 0.00 39.84 2.75
3551 3617 2.280797 TTCCGTCAGTGCTGGTGC 60.281 61.111 0.00 0.00 40.20 5.01
3552 3618 0.317160 TACTTCCGTCAGTGCTGGTG 59.683 55.000 0.00 0.00 0.00 4.17
3553 3619 0.317479 GTACTTCCGTCAGTGCTGGT 59.683 55.000 0.00 0.00 0.00 4.00
3554 3620 0.732880 CGTACTTCCGTCAGTGCTGG 60.733 60.000 0.00 0.00 0.00 4.85
3555 3621 0.039437 ACGTACTTCCGTCAGTGCTG 60.039 55.000 0.00 0.00 35.95 4.41
3556 3622 2.338381 ACGTACTTCCGTCAGTGCT 58.662 52.632 0.00 0.00 35.95 4.40
3557 3623 4.959446 ACGTACTTCCGTCAGTGC 57.041 55.556 0.00 0.00 35.95 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.