Multiple sequence alignment - TraesCS6B01G205900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G205900 chr6B 100.000 8448 0 0 1 8448 258005244 258013691 0.000000e+00 15601.0
1 TraesCS6B01G205900 chr6D 96.534 5973 142 29 239 6161 147157062 147151105 0.000000e+00 9823.0
2 TraesCS6B01G205900 chr6D 97.978 1533 24 5 6184 7716 147151110 147149585 0.000000e+00 2652.0
3 TraesCS6B01G205900 chr6D 94.631 447 17 4 7799 8240 147149590 147149146 0.000000e+00 686.0
4 TraesCS6B01G205900 chr6D 93.069 202 10 3 8248 8448 147149079 147148881 8.290000e-75 292.0
5 TraesCS6B01G205900 chr6D 95.588 68 2 1 7728 7794 294172528 294172595 3.220000e-19 108.0
6 TraesCS6B01G205900 chr6A 96.259 2994 82 14 3181 6161 200249801 200252777 0.000000e+00 4881.0
7 TraesCS6B01G205900 chr6A 93.871 2953 118 25 239 3162 200246896 200249814 0.000000e+00 4392.0
8 TraesCS6B01G205900 chr6A 94.984 1535 66 7 6184 7716 200252772 200254297 0.000000e+00 2398.0
9 TraesCS6B01G205900 chr6A 89.365 677 35 16 7799 8448 200254292 200254958 0.000000e+00 817.0
10 TraesCS6B01G205900 chr6A 83.660 153 23 2 3 154 562138987 562139138 8.840000e-30 143.0
11 TraesCS6B01G205900 chr3D 85.787 197 18 5 1 189 100514966 100514772 5.170000e-47 200.0
12 TraesCS6B01G205900 chr3D 86.364 88 12 0 1090 1177 323327721 323327808 6.980000e-16 97.1
13 TraesCS6B01G205900 chr3D 85.000 60 9 0 1288 1347 394194840 394194781 2.550000e-05 62.1
14 TraesCS6B01G205900 chr4A 98.387 62 0 1 7728 7788 34045337 34045398 3.220000e-19 108.0
15 TraesCS6B01G205900 chr5B 98.333 60 0 1 7728 7786 43450319 43450378 4.170000e-18 104.0
16 TraesCS6B01G205900 chr5B 84.211 95 10 4 7714 7804 14942855 14942762 4.200000e-13 87.9
17 TraesCS6B01G205900 chr7B 96.774 62 1 1 7728 7788 724217404 724217465 1.500000e-17 102.0
18 TraesCS6B01G205900 chr7B 91.489 47 4 0 7996 8042 476199897 476199943 1.970000e-06 65.8
19 TraesCS6B01G205900 chr1D 95.385 65 1 2 7730 7792 208413316 208413380 1.500000e-17 102.0
20 TraesCS6B01G205900 chr3B 95.238 63 2 1 7726 7787 829355533 829355595 1.940000e-16 99.0
21 TraesCS6B01G205900 chr3B 87.805 82 10 0 1102 1183 395858788 395858707 6.980000e-16 97.1
22 TraesCS6B01G205900 chr3B 85.000 60 9 0 1288 1347 513814764 513814705 2.550000e-05 62.1
23 TraesCS6B01G205900 chr2B 93.939 66 3 1 7728 7793 432719385 432719321 1.940000e-16 99.0
24 TraesCS6B01G205900 chr3A 82.569 109 17 2 1075 1183 399580097 399579991 2.510000e-15 95.3
25 TraesCS6B01G205900 chr4B 89.333 75 5 3 7728 7800 603998813 603998886 3.250000e-14 91.6
26 TraesCS6B01G205900 chr4B 89.362 47 5 0 7996 8042 270831668 270831714 9.160000e-05 60.2
27 TraesCS6B01G205900 chr2D 97.778 45 1 0 7996 8040 469737367 469737323 2.530000e-10 78.7
28 TraesCS6B01G205900 chr7D 91.489 47 4 0 7996 8042 452969839 452969885 1.970000e-06 65.8
29 TraesCS6B01G205900 chr1A 87.500 56 5 1 7995 8048 347323161 347323106 7.080000e-06 63.9
30 TraesCS6B01G205900 chr1A 90.909 44 3 1 8002 8045 478625906 478625948 3.290000e-04 58.4
31 TraesCS6B01G205900 chr7A 91.304 46 3 1 7996 8040 254882833 254882878 2.550000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G205900 chr6B 258005244 258013691 8447 False 15601.00 15601 100.00000 1 8448 1 chr6B.!!$F1 8447
1 TraesCS6B01G205900 chr6D 147148881 147157062 8181 True 3363.25 9823 95.55300 239 8448 4 chr6D.!!$R1 8209
2 TraesCS6B01G205900 chr6A 200246896 200254958 8062 False 3122.00 4881 93.61975 239 8448 4 chr6A.!!$F2 8209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.031043 CGCCTCATCTCTCTGAGCAG 59.969 60.000 0.00 0.00 41.12 4.24 F
122 123 0.034059 GCCGAGATCCACCATACCTG 59.966 60.000 0.00 0.00 0.00 4.00 F
1634 1691 0.041312 CCGAACAAAGTTCACGCTGG 60.041 55.000 10.15 0.00 0.00 4.85 F
1636 1693 0.317854 GAACAAAGTTCACGCTGGGC 60.318 55.000 5.09 0.00 0.00 5.36 F
2901 2968 0.106708 GTCTGGACAGCTCCACAACA 59.893 55.000 0.00 0.00 42.15 3.33 F
3338 3407 1.135315 CACGGAGGCATTCAAAGCG 59.865 57.895 0.00 0.00 0.00 4.68 F
4030 4099 0.730265 TGGTTGTTGCAGACACGTTC 59.270 50.000 1.85 0.00 38.18 3.95 F
5058 5134 0.746204 GGCTAGTGCTCCTGAAAGGC 60.746 60.000 0.00 0.00 45.45 4.35 F
5981 6061 1.805120 GCATGCATGATGAACCTTGCC 60.805 52.381 30.64 3.82 36.67 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1693 0.038159 AGAAGCTGAAGTCGGAACCG 60.038 55.000 6.94 6.94 41.35 4.44 R
1921 1978 2.557056 TGGTACCTTGAGAGTTGAGTCG 59.443 50.000 14.36 0.00 0.00 4.18 R
2692 2758 0.038166 TTTGTCCACCTGAGATGCCC 59.962 55.000 0.00 0.00 0.00 5.36 R
3338 3407 1.080569 CTTGCGGCCAACATGGAAC 60.081 57.895 2.24 0.00 40.96 3.62 R
4030 4099 0.169672 CAAGCTGAGCAAATGACCCG 59.830 55.000 7.39 0.00 0.00 5.28 R
5139 5215 1.074248 AGTTTTCCGTCCCGCCAAT 59.926 52.632 0.00 0.00 0.00 3.16 R
5283 5359 2.874780 CACGCCGAGTACACGAGC 60.875 66.667 14.54 13.79 35.09 5.03 R
6076 6156 1.067295 TGACACCCAAGGCATCTTCT 58.933 50.000 0.00 0.00 0.00 2.85 R
7742 7826 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.757512 TCCATCATCAGAGAGCTGCC 59.242 55.000 0.00 0.00 42.01 4.85
20 21 0.600518 CCATCATCAGAGAGCTGCCG 60.601 60.000 0.00 0.00 42.01 5.69
21 22 1.069427 ATCATCAGAGAGCTGCCGC 59.931 57.895 0.00 0.00 42.01 6.53
22 23 2.380433 ATCATCAGAGAGCTGCCGCC 62.380 60.000 0.00 0.00 42.01 6.13
23 24 4.218578 ATCAGAGAGCTGCCGCCG 62.219 66.667 0.00 0.00 42.01 6.46
34 35 4.959596 GCCGCCGCCTCATCTCTC 62.960 72.222 0.00 0.00 0.00 3.20
35 36 3.222855 CCGCCGCCTCATCTCTCT 61.223 66.667 0.00 0.00 0.00 3.10
36 37 2.027314 CGCCGCCTCATCTCTCTG 59.973 66.667 0.00 0.00 0.00 3.35
37 38 2.484928 CGCCGCCTCATCTCTCTGA 61.485 63.158 0.00 0.00 0.00 3.27
38 39 1.363443 GCCGCCTCATCTCTCTGAG 59.637 63.158 0.00 0.00 41.93 3.35
39 40 1.363443 CCGCCTCATCTCTCTGAGC 59.637 63.158 0.00 0.00 41.12 4.26
40 41 1.390383 CCGCCTCATCTCTCTGAGCA 61.390 60.000 0.00 0.00 41.12 4.26
41 42 0.031043 CGCCTCATCTCTCTGAGCAG 59.969 60.000 0.00 0.00 41.12 4.24
42 43 1.401761 GCCTCATCTCTCTGAGCAGA 58.598 55.000 0.00 4.72 41.12 4.26
43 44 1.755959 GCCTCATCTCTCTGAGCAGAA 59.244 52.381 0.00 0.00 41.12 3.02
44 45 2.481795 GCCTCATCTCTCTGAGCAGAAC 60.482 54.545 0.00 0.00 41.12 3.01
45 46 2.759535 CCTCATCTCTCTGAGCAGAACA 59.240 50.000 0.00 0.00 41.12 3.18
46 47 3.429272 CCTCATCTCTCTGAGCAGAACAC 60.429 52.174 0.00 0.00 41.12 3.32
47 48 3.160269 TCATCTCTCTGAGCAGAACACA 58.840 45.455 0.00 0.00 36.94 3.72
48 49 3.575687 TCATCTCTCTGAGCAGAACACAA 59.424 43.478 0.00 0.00 36.94 3.33
49 50 4.039609 TCATCTCTCTGAGCAGAACACAAA 59.960 41.667 0.00 0.00 36.94 2.83
50 51 3.722147 TCTCTCTGAGCAGAACACAAAC 58.278 45.455 0.00 0.00 36.94 2.93
51 52 3.386078 TCTCTCTGAGCAGAACACAAACT 59.614 43.478 0.00 0.00 36.94 2.66
52 53 3.722147 TCTCTGAGCAGAACACAAACTC 58.278 45.455 0.00 0.00 36.94 3.01
53 54 3.386078 TCTCTGAGCAGAACACAAACTCT 59.614 43.478 0.00 0.00 36.94 3.24
54 55 4.584743 TCTCTGAGCAGAACACAAACTCTA 59.415 41.667 0.00 0.00 36.94 2.43
55 56 5.069119 TCTCTGAGCAGAACACAAACTCTAA 59.931 40.000 0.00 0.00 36.94 2.10
56 57 5.670485 TCTGAGCAGAACACAAACTCTAAA 58.330 37.500 0.00 0.00 33.91 1.85
57 58 6.112734 TCTGAGCAGAACACAAACTCTAAAA 58.887 36.000 0.00 0.00 33.91 1.52
58 59 6.597672 TCTGAGCAGAACACAAACTCTAAAAA 59.402 34.615 0.00 0.00 33.91 1.94
93 94 2.928416 AAAAACCGAAGCCCTCTCG 58.072 52.632 0.00 0.00 0.00 4.04
94 95 1.235281 AAAAACCGAAGCCCTCTCGC 61.235 55.000 0.00 0.00 0.00 5.03
95 96 3.607370 AAACCGAAGCCCTCTCGCC 62.607 63.158 0.00 0.00 0.00 5.54
98 99 4.856607 CGAAGCCCTCTCGCCGAC 62.857 72.222 0.00 0.00 0.00 4.79
99 100 3.760035 GAAGCCCTCTCGCCGACA 61.760 66.667 0.00 0.00 0.00 4.35
100 101 3.296709 GAAGCCCTCTCGCCGACAA 62.297 63.158 0.00 0.00 0.00 3.18
101 102 3.302347 AAGCCCTCTCGCCGACAAG 62.302 63.158 0.00 0.00 0.00 3.16
102 103 4.821589 GCCCTCTCGCCGACAAGG 62.822 72.222 4.20 4.20 44.97 3.61
103 104 4.148825 CCCTCTCGCCGACAAGGG 62.149 72.222 13.77 13.77 42.47 3.95
111 112 2.107141 CCGACAAGGGCCGAGATC 59.893 66.667 0.00 0.00 35.97 2.75
112 113 2.107141 CGACAAGGGCCGAGATCC 59.893 66.667 0.00 0.00 0.00 3.36
113 114 2.721167 CGACAAGGGCCGAGATCCA 61.721 63.158 0.00 0.00 0.00 3.41
114 115 1.153349 GACAAGGGCCGAGATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
115 116 2.190578 CAAGGGCCGAGATCCACC 59.809 66.667 0.00 0.00 0.00 4.61
116 117 2.285368 AAGGGCCGAGATCCACCA 60.285 61.111 0.00 0.00 0.00 4.17
117 118 1.694169 AAGGGCCGAGATCCACCAT 60.694 57.895 0.00 0.00 0.00 3.55
118 119 0.399949 AAGGGCCGAGATCCACCATA 60.400 55.000 0.00 0.00 0.00 2.74
119 120 1.122019 AGGGCCGAGATCCACCATAC 61.122 60.000 0.00 0.00 0.00 2.39
120 121 1.371558 GGCCGAGATCCACCATACC 59.628 63.158 0.00 0.00 0.00 2.73
121 122 1.122019 GGCCGAGATCCACCATACCT 61.122 60.000 0.00 0.00 0.00 3.08
122 123 0.034059 GCCGAGATCCACCATACCTG 59.966 60.000 0.00 0.00 0.00 4.00
123 124 0.034059 CCGAGATCCACCATACCTGC 59.966 60.000 0.00 0.00 0.00 4.85
124 125 0.752658 CGAGATCCACCATACCTGCA 59.247 55.000 0.00 0.00 0.00 4.41
125 126 1.345741 CGAGATCCACCATACCTGCAT 59.654 52.381 0.00 0.00 0.00 3.96
126 127 2.775890 GAGATCCACCATACCTGCATG 58.224 52.381 0.00 0.00 0.00 4.06
131 132 2.602438 CCATACCTGCATGGCCCA 59.398 61.111 0.00 0.00 39.18 5.36
132 133 1.076118 CCATACCTGCATGGCCCAA 60.076 57.895 0.00 0.00 39.18 4.12
133 134 0.687098 CCATACCTGCATGGCCCAAA 60.687 55.000 0.00 0.00 39.18 3.28
134 135 0.748450 CATACCTGCATGGCCCAAAG 59.252 55.000 0.00 0.00 40.22 2.77
135 136 0.630673 ATACCTGCATGGCCCAAAGA 59.369 50.000 0.00 0.00 40.22 2.52
136 137 0.323360 TACCTGCATGGCCCAAAGAC 60.323 55.000 0.00 0.00 40.22 3.01
137 138 2.353610 CCTGCATGGCCCAAAGACC 61.354 63.158 0.00 0.00 0.00 3.85
138 139 1.607178 CTGCATGGCCCAAAGACCA 60.607 57.895 0.00 0.00 41.06 4.02
139 140 1.880819 CTGCATGGCCCAAAGACCAC 61.881 60.000 0.00 0.00 39.19 4.16
140 141 1.907807 GCATGGCCCAAAGACCACA 60.908 57.895 0.00 0.00 39.19 4.17
141 142 1.880819 GCATGGCCCAAAGACCACAG 61.881 60.000 0.00 0.00 39.19 3.66
142 143 1.077265 ATGGCCCAAAGACCACAGG 59.923 57.895 0.00 0.00 39.19 4.00
143 144 1.434513 ATGGCCCAAAGACCACAGGA 61.435 55.000 0.00 0.00 39.19 3.86
144 145 1.303643 GGCCCAAAGACCACAGGAG 60.304 63.158 0.00 0.00 0.00 3.69
145 146 1.761174 GCCCAAAGACCACAGGAGA 59.239 57.895 0.00 0.00 0.00 3.71
146 147 0.606673 GCCCAAAGACCACAGGAGAC 60.607 60.000 0.00 0.00 0.00 3.36
147 148 0.320771 CCCAAAGACCACAGGAGACG 60.321 60.000 0.00 0.00 0.00 4.18
148 149 0.679505 CCAAAGACCACAGGAGACGA 59.320 55.000 0.00 0.00 0.00 4.20
149 150 1.337260 CCAAAGACCACAGGAGACGAG 60.337 57.143 0.00 0.00 0.00 4.18
150 151 0.969894 AAAGACCACAGGAGACGAGG 59.030 55.000 0.00 0.00 0.00 4.63
151 152 0.178958 AAGACCACAGGAGACGAGGT 60.179 55.000 0.00 0.00 32.64 3.85
152 153 0.697079 AGACCACAGGAGACGAGGTA 59.303 55.000 0.00 0.00 30.89 3.08
153 154 1.096416 GACCACAGGAGACGAGGTAG 58.904 60.000 0.00 0.00 30.89 3.18
154 155 0.323542 ACCACAGGAGACGAGGTAGG 60.324 60.000 0.00 0.00 0.00 3.18
155 156 1.668101 CCACAGGAGACGAGGTAGGC 61.668 65.000 0.00 0.00 0.00 3.93
156 157 1.380112 ACAGGAGACGAGGTAGGCC 60.380 63.158 0.00 0.00 0.00 5.19
157 158 2.124236 AGGAGACGAGGTAGGCCG 60.124 66.667 0.00 0.00 40.50 6.13
158 159 3.217743 GGAGACGAGGTAGGCCGG 61.218 72.222 0.00 0.00 40.50 6.13
159 160 3.902086 GAGACGAGGTAGGCCGGC 61.902 72.222 21.18 21.18 40.50 6.13
160 161 4.753662 AGACGAGGTAGGCCGGCA 62.754 66.667 30.85 5.28 40.50 5.69
161 162 3.537874 GACGAGGTAGGCCGGCAT 61.538 66.667 30.85 26.24 40.50 4.40
162 163 3.501458 GACGAGGTAGGCCGGCATC 62.501 68.421 30.85 17.10 40.50 3.91
163 164 4.647615 CGAGGTAGGCCGGCATCG 62.648 72.222 30.85 23.19 40.50 3.84
183 184 2.908796 GGGAGACCGGATGAACCC 59.091 66.667 9.46 9.83 43.64 4.11
184 185 1.689582 GGGAGACCGGATGAACCCT 60.690 63.158 9.46 0.00 43.64 4.34
185 186 0.398098 GGGAGACCGGATGAACCCTA 60.398 60.000 9.46 0.00 43.64 3.53
186 187 1.041437 GGAGACCGGATGAACCCTAG 58.959 60.000 9.46 0.00 34.64 3.02
187 188 0.389757 GAGACCGGATGAACCCTAGC 59.610 60.000 9.46 0.00 34.64 3.42
188 189 1.067582 GACCGGATGAACCCTAGCG 59.932 63.158 9.46 0.00 34.64 4.26
189 190 2.280186 CCGGATGAACCCTAGCGC 60.280 66.667 0.00 0.00 34.64 5.92
190 191 2.499205 CGGATGAACCCTAGCGCA 59.501 61.111 11.47 0.00 34.64 6.09
191 192 1.592669 CGGATGAACCCTAGCGCAG 60.593 63.158 11.47 4.88 34.64 5.18
204 205 4.880537 CGCAGCTGGCTACGAGGG 62.881 72.222 17.12 0.00 41.67 4.30
205 206 4.537433 GCAGCTGGCTACGAGGGG 62.537 72.222 17.12 0.00 40.25 4.79
206 207 2.759973 CAGCTGGCTACGAGGGGA 60.760 66.667 5.57 0.00 0.00 4.81
207 208 2.443016 AGCTGGCTACGAGGGGAG 60.443 66.667 0.00 0.00 0.00 4.30
208 209 2.760385 GCTGGCTACGAGGGGAGT 60.760 66.667 0.00 0.00 0.00 3.85
209 210 2.359967 GCTGGCTACGAGGGGAGTT 61.360 63.158 0.00 0.00 0.00 3.01
210 211 1.041447 GCTGGCTACGAGGGGAGTTA 61.041 60.000 0.00 0.00 0.00 2.24
211 212 1.033574 CTGGCTACGAGGGGAGTTAG 58.966 60.000 0.00 0.00 0.00 2.34
212 213 1.041447 TGGCTACGAGGGGAGTTAGC 61.041 60.000 0.00 0.00 0.00 3.09
213 214 1.740905 GCTACGAGGGGAGTTAGCC 59.259 63.158 0.00 0.00 0.00 3.93
214 215 0.756070 GCTACGAGGGGAGTTAGCCT 60.756 60.000 0.00 0.00 0.00 4.58
215 216 1.777941 CTACGAGGGGAGTTAGCCTT 58.222 55.000 0.00 0.00 0.00 4.35
216 217 2.941480 CTACGAGGGGAGTTAGCCTTA 58.059 52.381 0.00 0.00 0.00 2.69
217 218 1.777941 ACGAGGGGAGTTAGCCTTAG 58.222 55.000 0.00 0.00 0.00 2.18
218 219 0.389757 CGAGGGGAGTTAGCCTTAGC 59.610 60.000 0.00 0.00 40.32 3.09
219 220 0.389757 GAGGGGAGTTAGCCTTAGCG 59.610 60.000 0.00 0.00 46.67 4.26
220 221 1.049289 AGGGGAGTTAGCCTTAGCGG 61.049 60.000 0.00 0.00 46.67 5.52
261 262 1.680338 AGGAGCCAAGTTGACAACAC 58.320 50.000 20.08 6.80 0.00 3.32
266 267 4.432712 GAGCCAAGTTGACAACACAAAAT 58.567 39.130 20.08 1.80 0.00 1.82
278 287 4.114073 CAACACAAAATCTGAGCAAAGCA 58.886 39.130 0.00 0.00 0.00 3.91
280 289 4.114794 ACACAAAATCTGAGCAAAGCAAC 58.885 39.130 0.00 0.00 0.00 4.17
308 317 7.980662 AGCTACATCATCATCTACATGAATAGC 59.019 37.037 0.00 15.19 42.53 2.97
452 461 1.213296 ACAAGCATCCCCTAACCGAT 58.787 50.000 0.00 0.00 0.00 4.18
463 472 2.093128 CCCTAACCGATGTTTACCTGCT 60.093 50.000 0.00 0.00 35.87 4.24
471 483 1.599797 GTTTACCTGCTGCCACCGT 60.600 57.895 0.00 0.00 0.00 4.83
536 548 1.569548 TCTCCGTACAGAATCCCTCCT 59.430 52.381 0.00 0.00 0.00 3.69
545 557 0.977395 GAATCCCTCCTATCCACCGG 59.023 60.000 0.00 0.00 0.00 5.28
737 757 4.752879 CCGCCACCCTGGTACGTG 62.753 72.222 0.00 0.00 40.46 4.49
827 847 0.460311 GGAGCGCGGGCATATATAGT 59.540 55.000 27.20 2.30 43.41 2.12
898 922 2.489329 CACTGACGAAGCCATTTCCAAT 59.511 45.455 0.00 0.00 31.82 3.16
921 945 3.853330 CGTGCGCATCTTCCACGG 61.853 66.667 15.91 0.00 46.03 4.94
986 1014 4.087892 GCAGCGGCTGAAGGAGGA 62.088 66.667 32.72 0.00 36.96 3.71
987 1015 2.186384 CAGCGGCTGAAGGAGGAG 59.814 66.667 25.33 0.00 32.44 3.69
988 1016 3.080121 AGCGGCTGAAGGAGGAGG 61.080 66.667 0.00 0.00 0.00 4.30
989 1017 3.077556 GCGGCTGAAGGAGGAGGA 61.078 66.667 0.00 0.00 0.00 3.71
990 1018 3.087666 GCGGCTGAAGGAGGAGGAG 62.088 68.421 0.00 0.00 0.00 3.69
991 1019 2.430610 CGGCTGAAGGAGGAGGAGG 61.431 68.421 0.00 0.00 0.00 4.30
1351 1400 3.649277 ATGGAGCGGTGCGTCTCAC 62.649 63.158 0.61 0.00 44.90 3.51
1352 1401 4.057428 GGAGCGGTGCGTCTCACT 62.057 66.667 0.00 0.00 44.98 3.41
1368 1417 5.240891 GTCTCACTTCAATTCATCACCTCA 58.759 41.667 0.00 0.00 0.00 3.86
1374 1423 5.936956 ACTTCAATTCATCACCTCACTTCTC 59.063 40.000 0.00 0.00 0.00 2.87
1397 1446 3.883669 AGCTCTGTTCATCCATTTCTCC 58.116 45.455 0.00 0.00 0.00 3.71
1423 1474 1.291877 ACGACAGGCGCTGATGTTTC 61.292 55.000 7.64 0.00 46.04 2.78
1458 1509 1.541310 TTGGCATCGAGAACCCGACT 61.541 55.000 0.00 0.00 41.70 4.18
1569 1626 6.819649 CCAACAAAATCATGGTATGCATCTTT 59.180 34.615 0.19 0.00 0.00 2.52
1594 1651 2.239150 ACAGCAGCTTCATGATCCTTCT 59.761 45.455 0.00 0.00 0.00 2.85
1595 1652 3.280295 CAGCAGCTTCATGATCCTTCTT 58.720 45.455 0.00 0.00 0.00 2.52
1596 1653 3.312973 CAGCAGCTTCATGATCCTTCTTC 59.687 47.826 0.00 0.00 0.00 2.87
1597 1654 3.054582 AGCAGCTTCATGATCCTTCTTCA 60.055 43.478 0.00 0.00 0.00 3.02
1612 1669 4.568380 CCTTCTTCAGTCATGGAATGGGAA 60.568 45.833 0.00 0.00 46.73 3.97
1634 1691 0.041312 CCGAACAAAGTTCACGCTGG 60.041 55.000 10.15 0.00 0.00 4.85
1636 1693 0.317854 GAACAAAGTTCACGCTGGGC 60.318 55.000 5.09 0.00 0.00 5.36
1845 1902 7.214467 TCCATGTTTTAATCTTGTGGAGTTC 57.786 36.000 0.00 0.00 31.21 3.01
1959 2016 5.487488 AGGTACCACATCTTCACATCCTTTA 59.513 40.000 15.94 0.00 0.00 1.85
2010 2068 7.112009 CGTTCGATACAGAAATTTGCAATATGG 59.888 37.037 0.00 0.00 0.00 2.74
2151 2209 3.564027 GCGTACATCGGGCAGCAC 61.564 66.667 0.00 0.00 40.26 4.40
2441 2506 6.382919 ACCCCAGCTTATTTAGAAGTAACA 57.617 37.500 0.00 0.00 0.00 2.41
2538 2604 2.896685 CTCTGTGGAAGGTCAAGAGAGT 59.103 50.000 0.00 0.00 0.00 3.24
2674 2740 5.220931 GGAAATCTGTGCAGATACAATGGTC 60.221 44.000 14.24 4.98 46.75 4.02
2692 2758 4.655527 GGCGACGGTATGATCAGG 57.344 61.111 0.09 0.00 0.00 3.86
2704 2770 0.326904 TGATCAGGGGCATCTCAGGT 60.327 55.000 0.00 0.00 0.00 4.00
2762 2828 7.707893 GCAATATGCAGTGAAGGAAATAAATGT 59.292 33.333 0.00 0.00 44.26 2.71
2812 2878 9.730705 TGACAGTGAAATCAGATCTCTAAAATT 57.269 29.630 0.00 0.00 0.00 1.82
2841 2908 6.699575 ATTTAAATAGGCGAGATGCTTGTT 57.300 33.333 0.00 0.00 45.43 2.83
2844 2911 0.901827 TAGGCGAGATGCTTGTTGGA 59.098 50.000 0.00 0.00 45.43 3.53
2901 2968 0.106708 GTCTGGACAGCTCCACAACA 59.893 55.000 0.00 0.00 42.15 3.33
3215 3283 7.259088 ACATGTTAGGACTAGGAACTCAAAT 57.741 36.000 0.00 0.00 41.75 2.32
3226 3294 9.399403 GACTAGGAACTCAAATTTGACATTTTC 57.601 33.333 16.91 14.88 41.75 2.29
3338 3407 1.135315 CACGGAGGCATTCAAAGCG 59.865 57.895 0.00 0.00 0.00 4.68
3574 3643 7.177832 TCCTCAATTTTGAACTCGGATAGTA 57.822 36.000 0.00 0.00 37.50 1.82
3593 3662 9.262358 GGATAGTAAAGTCTGATGAATGTTACC 57.738 37.037 0.00 0.00 0.00 2.85
3594 3663 9.262358 GATAGTAAAGTCTGATGAATGTTACCC 57.738 37.037 0.00 0.00 0.00 3.69
3697 3766 2.975489 GGATGGAGTGATCTACATGGGT 59.025 50.000 0.00 0.00 44.48 4.51
4030 4099 0.730265 TGGTTGTTGCAGACACGTTC 59.270 50.000 1.85 0.00 38.18 3.95
4036 4105 2.028484 GCAGACACGTTCGGGTCA 59.972 61.111 25.52 0.00 36.50 4.02
4138 4207 6.479990 TCTGTTCATGTAGTTTCAACTGTCAG 59.520 38.462 2.26 0.00 40.07 3.51
4281 4357 1.141657 GCTGGAGGATGGTAATGCAGA 59.858 52.381 0.00 0.00 34.65 4.26
4284 4360 2.846206 TGGAGGATGGTAATGCAGAGTT 59.154 45.455 0.00 0.00 0.00 3.01
4438 4514 2.290071 CGACCCAAACTGGTACTGGATT 60.290 50.000 0.00 0.00 39.24 3.01
4579 4655 1.076332 AACATCTTACGTTGGCGCTC 58.924 50.000 7.64 0.00 42.83 5.03
4702 4778 3.052455 TGCTGCTTCTTGGAAACGATA 57.948 42.857 0.00 0.00 0.00 2.92
4902 4978 9.078990 ACCTTCGACAATATCAGATATTCTGTA 57.921 33.333 12.14 0.00 44.58 2.74
5058 5134 0.746204 GGCTAGTGCTCCTGAAAGGC 60.746 60.000 0.00 0.00 45.45 4.35
5139 5215 4.162320 GGAAAGACCACTCTGATGGATGTA 59.838 45.833 11.46 0.00 43.02 2.29
5283 5359 4.494035 CCACATGTCACCGTTTATGAATCG 60.494 45.833 0.00 0.00 0.00 3.34
5425 5501 4.020543 ACTGATCTCTGGAGTACTGAACC 58.979 47.826 0.00 0.00 0.00 3.62
5898 5974 2.012673 GGACACAACTCATGCCATCTC 58.987 52.381 0.00 0.00 0.00 2.75
5945 6021 7.417342 GCTCCTTACTGATCTATTGAACAGAGT 60.417 40.741 18.50 3.67 43.19 3.24
5981 6061 1.805120 GCATGCATGATGAACCTTGCC 60.805 52.381 30.64 3.82 36.67 4.52
6076 6156 1.623811 GAAGTGACCACCCTAGCTCAA 59.376 52.381 0.00 0.00 0.00 3.02
6106 6186 1.098712 TGGGTGTCAACTTTGCCGAC 61.099 55.000 0.00 0.00 0.00 4.79
6114 6194 2.988493 TCAACTTTGCCGACGTATACAC 59.012 45.455 3.32 0.00 0.00 2.90
6151 6231 2.353704 CCGGTATGTTGCAGTCTCAGAA 60.354 50.000 0.00 0.00 0.00 3.02
6161 6241 2.347661 GCAGTCTCAGAACGTTGTTTCG 60.348 50.000 5.00 0.00 0.00 3.46
6162 6242 2.858344 CAGTCTCAGAACGTTGTTTCGT 59.142 45.455 5.00 0.00 46.19 3.85
6174 6254 5.934921 ACGTTGTTTCGTTTTTCTTCTTCT 58.065 33.333 0.00 0.00 41.37 2.85
6175 6255 6.019762 ACGTTGTTTCGTTTTTCTTCTTCTC 58.980 36.000 0.00 0.00 41.37 2.87
6176 6256 6.128363 ACGTTGTTTCGTTTTTCTTCTTCTCT 60.128 34.615 0.00 0.00 41.37 3.10
6177 6257 6.741358 CGTTGTTTCGTTTTTCTTCTTCTCTT 59.259 34.615 0.00 0.00 0.00 2.85
6178 6258 7.252995 CGTTGTTTCGTTTTTCTTCTTCTCTTG 60.253 37.037 0.00 0.00 0.00 3.02
6179 6259 7.372451 TGTTTCGTTTTTCTTCTTCTCTTGA 57.628 32.000 0.00 0.00 0.00 3.02
6180 6260 7.985476 TGTTTCGTTTTTCTTCTTCTCTTGAT 58.015 30.769 0.00 0.00 0.00 2.57
6181 6261 9.104965 TGTTTCGTTTTTCTTCTTCTCTTGATA 57.895 29.630 0.00 0.00 0.00 2.15
6182 6262 9.587461 GTTTCGTTTTTCTTCTTCTCTTGATAG 57.413 33.333 0.00 0.00 0.00 2.08
6183 6263 8.888579 TTCGTTTTTCTTCTTCTCTTGATAGT 57.111 30.769 0.00 0.00 0.00 2.12
6184 6264 8.299262 TCGTTTTTCTTCTTCTCTTGATAGTG 57.701 34.615 0.00 0.00 0.00 2.74
6185 6265 7.926555 TCGTTTTTCTTCTTCTCTTGATAGTGT 59.073 33.333 0.00 0.00 0.00 3.55
6186 6266 8.552034 CGTTTTTCTTCTTCTCTTGATAGTGTT 58.448 33.333 0.00 0.00 0.00 3.32
6189 6269 9.613428 TTTTCTTCTTCTCTTGATAGTGTTTCA 57.387 29.630 0.00 0.00 0.00 2.69
6190 6270 8.824159 TTCTTCTTCTCTTGATAGTGTTTCAG 57.176 34.615 0.00 0.00 0.00 3.02
6191 6271 7.957002 TCTTCTTCTCTTGATAGTGTTTCAGT 58.043 34.615 0.00 0.00 0.00 3.41
6192 6272 8.424918 TCTTCTTCTCTTGATAGTGTTTCAGTT 58.575 33.333 0.00 0.00 0.00 3.16
6198 6278 9.607988 TCTCTTGATAGTGTTTCAGTTTGTTTA 57.392 29.630 0.00 0.00 0.00 2.01
6233 6313 8.741841 TCTATCATTTCACTGATTCAAATGCAA 58.258 29.630 0.00 0.00 37.41 4.08
6236 6316 7.156000 TCATTTCACTGATTCAAATGCAACAT 58.844 30.769 0.00 0.00 37.41 2.71
6237 6317 6.772770 TTTCACTGATTCAAATGCAACATG 57.227 33.333 0.00 0.00 0.00 3.21
6546 6628 8.067784 CAGCGTGAGAAAGAAACTTATTTGTAA 58.932 33.333 0.00 0.00 0.00 2.41
7246 7328 0.465705 CGGTGGCATGGACACTCTAT 59.534 55.000 1.79 0.00 42.03 1.98
7565 7649 4.569719 ATTTGGTATCCGTTTCTCAGGT 57.430 40.909 0.00 0.00 0.00 4.00
7639 7723 3.995636 TGTAACTATCAGAGAAGGGCCT 58.004 45.455 0.00 0.00 0.00 5.19
7716 7800 8.821894 GTCTATCTTTGGTTCAGTTGATACATC 58.178 37.037 0.00 0.00 0.00 3.06
7717 7801 8.539544 TCTATCTTTGGTTCAGTTGATACATCA 58.460 33.333 0.00 0.00 34.44 3.07
7718 7802 9.334947 CTATCTTTGGTTCAGTTGATACATCAT 57.665 33.333 0.00 0.00 36.56 2.45
7720 7804 8.492673 TCTTTGGTTCAGTTGATACATCATAC 57.507 34.615 0.00 0.00 36.56 2.39
7721 7805 6.902224 TTGGTTCAGTTGATACATCATACG 57.098 37.500 0.00 0.00 36.56 3.06
7722 7806 6.215495 TGGTTCAGTTGATACATCATACGA 57.785 37.500 0.00 0.00 36.56 3.43
7723 7807 6.040247 TGGTTCAGTTGATACATCATACGAC 58.960 40.000 0.00 0.00 36.56 4.34
7724 7808 5.462398 GGTTCAGTTGATACATCATACGACC 59.538 44.000 0.00 3.69 36.56 4.79
7725 7809 5.845391 TCAGTTGATACATCATACGACCA 57.155 39.130 0.00 0.00 36.56 4.02
7726 7810 6.405278 TCAGTTGATACATCATACGACCAT 57.595 37.500 0.00 0.00 36.56 3.55
7727 7811 7.519032 TCAGTTGATACATCATACGACCATA 57.481 36.000 0.00 0.00 36.56 2.74
7728 7812 8.122472 TCAGTTGATACATCATACGACCATAT 57.878 34.615 0.00 0.00 36.56 1.78
7729 7813 9.238368 TCAGTTGATACATCATACGACCATATA 57.762 33.333 0.00 0.00 36.56 0.86
7732 7816 9.249457 GTTGATACATCATACGACCATATATGG 57.751 37.037 27.16 27.16 44.17 2.74
7733 7817 7.926018 TTGATACATCATACGACCATATATGGC 59.074 37.037 28.41 20.03 43.24 4.40
7744 7828 4.077300 CCATATATGGCCGTATGCATCT 57.923 45.455 25.15 3.33 41.75 2.90
7745 7829 4.454678 CCATATATGGCCGTATGCATCTT 58.545 43.478 25.15 2.60 41.75 2.40
7746 7830 4.883585 CCATATATGGCCGTATGCATCTTT 59.116 41.667 25.15 1.87 41.75 2.52
7747 7831 5.008019 CCATATATGGCCGTATGCATCTTTC 59.992 44.000 25.15 0.00 41.75 2.62
7748 7832 2.645838 ATGGCCGTATGCATCTTTCT 57.354 45.000 0.19 0.00 43.89 2.52
7749 7833 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02
7750 7834 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
7751 7835 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
7760 7844 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
7761 7845 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
7762 7846 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
7763 7847 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
7764 7848 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
7782 7866 2.605837 GGCAAACCCCTTTTCGAAAA 57.394 45.000 21.35 21.35 0.00 2.29
7783 7867 2.907634 GGCAAACCCCTTTTCGAAAAA 58.092 42.857 22.67 8.37 0.00 1.94
7819 7903 5.556915 TCATACATGTTCCCTTCGAAAAGT 58.443 37.500 2.30 0.00 30.39 2.66
7828 7912 3.328343 TCCCTTCGAAAAGTCCATTACCA 59.672 43.478 0.00 0.00 0.00 3.25
7834 7918 7.040961 CCTTCGAAAAGTCCATTACCAACTAAA 60.041 37.037 0.00 0.00 0.00 1.85
7859 7943 3.119352 GGCCTAAAAGATGACTTGGCTTG 60.119 47.826 0.00 0.00 40.38 4.01
7924 8008 4.576463 AGTGACAACTAGCTTTGGAAACTG 59.424 41.667 0.00 0.00 33.79 3.16
7959 8043 3.084039 AGATTTGTGAATGGTGATGCGT 58.916 40.909 0.00 0.00 0.00 5.24
8007 8091 1.891150 TCGTTCACAAGTACTCCCTCC 59.109 52.381 0.00 0.00 0.00 4.30
8206 8295 7.057894 TCTTATTTCAACAACTAACAGGGTGT 58.942 34.615 0.00 0.00 0.00 4.16
8268 8418 7.388776 TCATCATAGCCCTAAGAAATCGAAATG 59.611 37.037 0.00 0.00 0.00 2.32
8299 8449 8.910666 CATAAGACTAATGCTTGTAGAATCGAG 58.089 37.037 0.00 0.00 0.00 4.04
8345 8497 0.824109 CATCCACTAGTCCGCCAGAA 59.176 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.757512 GGCAGCTCTCTGATGATGGA 59.242 55.000 0.00 0.00 42.95 3.41
1 2 0.600518 CGGCAGCTCTCTGATGATGG 60.601 60.000 0.00 0.00 42.95 3.51
2 3 1.222766 GCGGCAGCTCTCTGATGATG 61.223 60.000 0.00 0.00 42.95 3.07
3 4 1.069427 GCGGCAGCTCTCTGATGAT 59.931 57.895 0.00 0.00 42.95 2.45
4 5 2.498248 GCGGCAGCTCTCTGATGA 59.502 61.111 0.00 0.00 42.95 2.92
5 6 2.588314 GGCGGCAGCTCTCTGATG 60.588 66.667 9.17 0.00 42.95 3.07
6 7 4.218578 CGGCGGCAGCTCTCTGAT 62.219 66.667 10.53 0.00 42.95 2.90
17 18 4.959596 GAGAGATGAGGCGGCGGC 62.960 72.222 27.24 27.24 38.90 6.53
18 19 3.222855 AGAGAGATGAGGCGGCGG 61.223 66.667 9.78 0.00 0.00 6.13
19 20 2.027314 CAGAGAGATGAGGCGGCG 59.973 66.667 0.51 0.51 0.00 6.46
20 21 1.363443 CTCAGAGAGATGAGGCGGC 59.637 63.158 0.00 0.00 42.52 6.53
21 22 1.363443 GCTCAGAGAGATGAGGCGG 59.637 63.158 0.00 0.00 45.66 6.13
22 23 0.031043 CTGCTCAGAGAGATGAGGCG 59.969 60.000 0.00 0.00 45.66 5.52
23 24 1.401761 TCTGCTCAGAGAGATGAGGC 58.598 55.000 0.00 0.00 45.66 4.70
24 25 2.759535 TGTTCTGCTCAGAGAGATGAGG 59.240 50.000 0.00 0.00 45.66 3.86
26 27 3.160269 TGTGTTCTGCTCAGAGAGATGA 58.840 45.455 0.00 0.00 38.88 2.92
27 28 3.589495 TGTGTTCTGCTCAGAGAGATG 57.411 47.619 0.00 0.00 38.88 2.90
28 29 4.040217 AGTTTGTGTTCTGCTCAGAGAGAT 59.960 41.667 0.00 0.00 38.88 2.75
29 30 3.386078 AGTTTGTGTTCTGCTCAGAGAGA 59.614 43.478 0.00 0.00 38.88 3.10
30 31 3.726607 AGTTTGTGTTCTGCTCAGAGAG 58.273 45.455 0.00 0.00 38.88 3.20
31 32 3.386078 AGAGTTTGTGTTCTGCTCAGAGA 59.614 43.478 0.00 0.00 38.88 3.10
32 33 3.726607 AGAGTTTGTGTTCTGCTCAGAG 58.273 45.455 0.00 0.00 38.88 3.35
33 34 3.827008 AGAGTTTGTGTTCTGCTCAGA 57.173 42.857 0.00 0.00 35.27 3.27
34 35 5.991328 TTTAGAGTTTGTGTTCTGCTCAG 57.009 39.130 0.00 0.00 0.00 3.35
35 36 6.751514 TTTTTAGAGTTTGTGTTCTGCTCA 57.248 33.333 0.00 0.00 0.00 4.26
75 76 1.235281 GCGAGAGGGCTTCGGTTTTT 61.235 55.000 8.23 0.00 0.00 1.94
76 77 1.671379 GCGAGAGGGCTTCGGTTTT 60.671 57.895 8.23 0.00 0.00 2.43
77 78 2.047179 GCGAGAGGGCTTCGGTTT 60.047 61.111 8.23 0.00 0.00 3.27
78 79 4.083862 GGCGAGAGGGCTTCGGTT 62.084 66.667 8.23 0.00 38.40 4.44
81 82 4.856607 GTCGGCGAGAGGGCTTCG 62.857 72.222 11.20 0.00 39.52 3.79
82 83 3.296709 TTGTCGGCGAGAGGGCTTC 62.297 63.158 11.20 0.00 39.52 3.86
83 84 3.302347 CTTGTCGGCGAGAGGGCTT 62.302 63.158 11.20 0.00 39.52 4.35
84 85 3.764466 CTTGTCGGCGAGAGGGCT 61.764 66.667 11.20 0.00 39.52 5.19
85 86 4.821589 CCTTGTCGGCGAGAGGGC 62.822 72.222 21.66 4.83 37.98 5.19
86 87 4.148825 CCCTTGTCGGCGAGAGGG 62.149 72.222 31.83 31.83 42.66 4.30
87 88 4.821589 GCCCTTGTCGGCGAGAGG 62.822 72.222 24.80 24.80 39.64 3.69
94 95 2.107141 GATCTCGGCCCTTGTCGG 59.893 66.667 0.00 0.00 40.82 4.79
95 96 2.107141 GGATCTCGGCCCTTGTCG 59.893 66.667 0.00 0.00 42.14 4.35
96 97 1.153349 GTGGATCTCGGCCCTTGTC 60.153 63.158 0.00 0.00 0.00 3.18
97 98 2.670148 GGTGGATCTCGGCCCTTGT 61.670 63.158 0.00 0.00 0.00 3.16
98 99 1.987807 ATGGTGGATCTCGGCCCTTG 61.988 60.000 0.00 0.00 0.00 3.61
99 100 0.399949 TATGGTGGATCTCGGCCCTT 60.400 55.000 0.00 0.00 0.00 3.95
100 101 1.122019 GTATGGTGGATCTCGGCCCT 61.122 60.000 0.00 0.00 0.00 5.19
101 102 1.371558 GTATGGTGGATCTCGGCCC 59.628 63.158 0.00 0.00 0.00 5.80
102 103 1.122019 AGGTATGGTGGATCTCGGCC 61.122 60.000 0.00 0.00 0.00 6.13
103 104 0.034059 CAGGTATGGTGGATCTCGGC 59.966 60.000 0.00 0.00 0.00 5.54
104 105 0.034059 GCAGGTATGGTGGATCTCGG 59.966 60.000 0.00 0.00 0.00 4.63
105 106 0.752658 TGCAGGTATGGTGGATCTCG 59.247 55.000 0.00 0.00 0.00 4.04
106 107 2.551721 CCATGCAGGTATGGTGGATCTC 60.552 54.545 8.09 0.00 42.16 2.75
107 108 1.422781 CCATGCAGGTATGGTGGATCT 59.577 52.381 8.09 0.00 42.16 2.75
108 109 1.901591 CCATGCAGGTATGGTGGATC 58.098 55.000 8.09 0.00 42.16 3.36
115 116 0.748450 CTTTGGGCCATGCAGGTATG 59.252 55.000 7.26 0.00 40.61 2.39
116 117 0.630673 TCTTTGGGCCATGCAGGTAT 59.369 50.000 7.26 0.00 40.61 2.73
117 118 0.323360 GTCTTTGGGCCATGCAGGTA 60.323 55.000 7.26 0.00 40.61 3.08
118 119 1.607467 GTCTTTGGGCCATGCAGGT 60.607 57.895 7.26 0.00 40.61 4.00
119 120 2.353610 GGTCTTTGGGCCATGCAGG 61.354 63.158 7.26 0.00 41.84 4.85
120 121 1.607178 TGGTCTTTGGGCCATGCAG 60.607 57.895 7.26 4.09 0.00 4.41
121 122 1.907807 GTGGTCTTTGGGCCATGCA 60.908 57.895 7.26 0.00 37.09 3.96
122 123 1.880819 CTGTGGTCTTTGGGCCATGC 61.881 60.000 7.26 0.00 37.09 4.06
123 124 1.252904 CCTGTGGTCTTTGGGCCATG 61.253 60.000 7.26 3.51 37.09 3.66
124 125 1.077265 CCTGTGGTCTTTGGGCCAT 59.923 57.895 7.26 0.00 37.09 4.40
125 126 2.067932 CTCCTGTGGTCTTTGGGCCA 62.068 60.000 0.00 0.00 0.00 5.36
126 127 1.303643 CTCCTGTGGTCTTTGGGCC 60.304 63.158 0.00 0.00 0.00 5.80
127 128 0.606673 GTCTCCTGTGGTCTTTGGGC 60.607 60.000 0.00 0.00 0.00 5.36
128 129 0.320771 CGTCTCCTGTGGTCTTTGGG 60.321 60.000 0.00 0.00 0.00 4.12
129 130 0.679505 TCGTCTCCTGTGGTCTTTGG 59.320 55.000 0.00 0.00 0.00 3.28
130 131 1.337260 CCTCGTCTCCTGTGGTCTTTG 60.337 57.143 0.00 0.00 0.00 2.77
131 132 0.969894 CCTCGTCTCCTGTGGTCTTT 59.030 55.000 0.00 0.00 0.00 2.52
132 133 0.178958 ACCTCGTCTCCTGTGGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
133 134 0.697079 TACCTCGTCTCCTGTGGTCT 59.303 55.000 0.00 0.00 32.74 3.85
134 135 1.096416 CTACCTCGTCTCCTGTGGTC 58.904 60.000 0.00 0.00 32.74 4.02
135 136 0.323542 CCTACCTCGTCTCCTGTGGT 60.324 60.000 0.00 0.00 35.05 4.16
136 137 1.668101 GCCTACCTCGTCTCCTGTGG 61.668 65.000 0.00 0.00 0.00 4.17
137 138 1.668101 GGCCTACCTCGTCTCCTGTG 61.668 65.000 0.00 0.00 0.00 3.66
138 139 1.380112 GGCCTACCTCGTCTCCTGT 60.380 63.158 0.00 0.00 0.00 4.00
139 140 2.482333 CGGCCTACCTCGTCTCCTG 61.482 68.421 0.00 0.00 0.00 3.86
140 141 2.124236 CGGCCTACCTCGTCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
141 142 3.217743 CCGGCCTACCTCGTCTCC 61.218 72.222 0.00 0.00 0.00 3.71
142 143 3.902086 GCCGGCCTACCTCGTCTC 61.902 72.222 18.11 0.00 0.00 3.36
143 144 4.753662 TGCCGGCCTACCTCGTCT 62.754 66.667 26.77 0.00 0.00 4.18
144 145 3.501458 GATGCCGGCCTACCTCGTC 62.501 68.421 26.77 1.19 0.00 4.20
145 146 3.537874 GATGCCGGCCTACCTCGT 61.538 66.667 26.77 0.00 0.00 4.18
146 147 4.647615 CGATGCCGGCCTACCTCG 62.648 72.222 26.77 19.40 0.00 4.63
166 167 0.398098 TAGGGTTCATCCGGTCTCCC 60.398 60.000 0.00 8.03 37.00 4.30
167 168 1.041437 CTAGGGTTCATCCGGTCTCC 58.959 60.000 0.00 0.00 37.00 3.71
168 169 0.389757 GCTAGGGTTCATCCGGTCTC 59.610 60.000 0.00 0.00 37.00 3.36
169 170 1.392710 CGCTAGGGTTCATCCGGTCT 61.393 60.000 0.00 0.00 37.00 3.85
170 171 1.067582 CGCTAGGGTTCATCCGGTC 59.932 63.158 0.00 0.00 37.00 4.79
171 172 3.090219 GCGCTAGGGTTCATCCGGT 62.090 63.158 8.77 0.00 37.00 5.28
172 173 2.280186 GCGCTAGGGTTCATCCGG 60.280 66.667 8.77 0.00 37.00 5.14
173 174 1.592669 CTGCGCTAGGGTTCATCCG 60.593 63.158 9.73 0.00 37.00 4.18
174 175 1.889573 GCTGCGCTAGGGTTCATCC 60.890 63.158 9.73 0.00 0.00 3.51
175 176 1.144936 AGCTGCGCTAGGGTTCATC 59.855 57.895 9.73 0.00 36.99 2.92
176 177 1.153289 CAGCTGCGCTAGGGTTCAT 60.153 57.895 9.73 0.00 36.40 2.57
177 178 2.265739 CAGCTGCGCTAGGGTTCA 59.734 61.111 9.73 0.00 36.40 3.18
178 179 2.512515 CCAGCTGCGCTAGGGTTC 60.513 66.667 8.66 0.00 36.40 3.62
179 180 4.785453 GCCAGCTGCGCTAGGGTT 62.785 66.667 8.66 0.00 36.40 4.11
188 189 4.537433 CCCCTCGTAGCCAGCTGC 62.537 72.222 8.66 3.91 41.71 5.25
189 190 2.759973 TCCCCTCGTAGCCAGCTG 60.760 66.667 6.78 6.78 0.00 4.24
190 191 2.443016 CTCCCCTCGTAGCCAGCT 60.443 66.667 0.00 0.00 0.00 4.24
191 192 1.041447 TAACTCCCCTCGTAGCCAGC 61.041 60.000 0.00 0.00 0.00 4.85
192 193 1.033574 CTAACTCCCCTCGTAGCCAG 58.966 60.000 0.00 0.00 0.00 4.85
193 194 1.041447 GCTAACTCCCCTCGTAGCCA 61.041 60.000 0.00 0.00 0.00 4.75
194 195 1.740905 GCTAACTCCCCTCGTAGCC 59.259 63.158 0.00 0.00 0.00 3.93
195 196 0.756070 AGGCTAACTCCCCTCGTAGC 60.756 60.000 0.00 0.00 0.00 3.58
196 197 1.777941 AAGGCTAACTCCCCTCGTAG 58.222 55.000 0.00 0.00 0.00 3.51
197 198 2.941480 CTAAGGCTAACTCCCCTCGTA 58.059 52.381 0.00 0.00 0.00 3.43
198 199 1.777941 CTAAGGCTAACTCCCCTCGT 58.222 55.000 0.00 0.00 0.00 4.18
199 200 0.389757 GCTAAGGCTAACTCCCCTCG 59.610 60.000 0.00 0.00 35.22 4.63
200 201 0.389757 CGCTAAGGCTAACTCCCCTC 59.610 60.000 0.00 0.00 36.09 4.30
201 202 1.049289 CCGCTAAGGCTAACTCCCCT 61.049 60.000 0.00 0.00 36.09 4.79
202 203 1.446366 CCGCTAAGGCTAACTCCCC 59.554 63.158 0.00 0.00 36.09 4.81
228 229 1.302993 CTCCTTCCCCGGCGAAAAA 60.303 57.895 9.30 0.00 0.00 1.94
229 230 2.349755 CTCCTTCCCCGGCGAAAA 59.650 61.111 9.30 0.00 0.00 2.29
230 231 4.404098 GCTCCTTCCCCGGCGAAA 62.404 66.667 9.30 0.00 0.00 3.46
234 235 4.803908 CTTGGCTCCTTCCCCGGC 62.804 72.222 0.00 0.00 0.00 6.13
235 236 2.907179 AACTTGGCTCCTTCCCCGG 61.907 63.158 0.00 0.00 0.00 5.73
236 237 1.675641 CAACTTGGCTCCTTCCCCG 60.676 63.158 0.00 0.00 0.00 5.73
237 238 0.609406 GTCAACTTGGCTCCTTCCCC 60.609 60.000 0.00 0.00 0.00 4.81
261 262 4.620184 GCTAGTTGCTTTGCTCAGATTTTG 59.380 41.667 0.00 0.00 38.95 2.44
278 287 8.414629 TCATGTAGATGATGATGTAGCTAGTT 57.585 34.615 0.00 0.00 33.40 2.24
344 353 6.470235 GCATTGTGACGAAAATTAATCCTCTG 59.530 38.462 0.00 0.00 0.00 3.35
345 354 6.150976 TGCATTGTGACGAAAATTAATCCTCT 59.849 34.615 0.00 0.00 0.00 3.69
346 355 6.321717 TGCATTGTGACGAAAATTAATCCTC 58.678 36.000 0.00 0.00 0.00 3.71
347 356 6.266168 TGCATTGTGACGAAAATTAATCCT 57.734 33.333 0.00 0.00 0.00 3.24
348 357 6.531240 ACATGCATTGTGACGAAAATTAATCC 59.469 34.615 0.00 0.00 37.11 3.01
349 358 7.510428 ACATGCATTGTGACGAAAATTAATC 57.490 32.000 0.00 0.00 37.11 1.75
452 461 1.599518 CGGTGGCAGCAGGTAAACA 60.600 57.895 17.80 0.00 0.00 2.83
681 701 1.741706 CCTTGTCGTTCGGCTCTACTA 59.258 52.381 0.00 0.00 0.00 1.82
744 764 0.745486 TAGGGCGTCGTGATCGAGAA 60.745 55.000 0.00 0.00 46.96 2.87
898 922 1.139734 GAAGATGCGCACGAGAGGA 59.860 57.895 14.90 0.00 0.00 3.71
921 945 1.171308 TCTTGCTTTGCTGATGCTCC 58.829 50.000 0.00 0.00 40.48 4.70
958 982 4.072088 CCGCTGCCGTTGTTCGTC 62.072 66.667 0.00 0.00 37.94 4.20
984 1012 4.565850 ATCGGCCCCTCCTCCTCC 62.566 72.222 0.00 0.00 0.00 4.30
985 1013 3.237741 CATCGGCCCCTCCTCCTC 61.238 72.222 0.00 0.00 0.00 3.71
986 1014 4.888325 CCATCGGCCCCTCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
987 1015 4.880426 TCCATCGGCCCCTCCTCC 62.880 72.222 0.00 0.00 0.00 4.30
988 1016 3.237741 CTCCATCGGCCCCTCCTC 61.238 72.222 0.00 0.00 0.00 3.71
989 1017 3.106859 ATCTCCATCGGCCCCTCCT 62.107 63.158 0.00 0.00 0.00 3.69
990 1018 2.527875 ATCTCCATCGGCCCCTCC 60.528 66.667 0.00 0.00 0.00 4.30
991 1019 3.064416 GATCTCCATCGGCCCCTC 58.936 66.667 0.00 0.00 0.00 4.30
1351 1400 6.171921 AGAGAAGTGAGGTGATGAATTGAAG 58.828 40.000 0.00 0.00 0.00 3.02
1352 1401 6.119240 AGAGAAGTGAGGTGATGAATTGAA 57.881 37.500 0.00 0.00 0.00 2.69
1368 1417 4.348486 TGGATGAACAGAGCTAGAGAAGT 58.652 43.478 0.00 0.00 0.00 3.01
1374 1423 5.055812 GGAGAAATGGATGAACAGAGCTAG 58.944 45.833 0.00 0.00 0.00 3.42
1409 1460 0.806868 CACATGAAACATCAGCGCCT 59.193 50.000 2.29 0.00 0.00 5.52
1423 1474 1.290955 CAACCCTGCCAAGCACATG 59.709 57.895 0.00 0.00 33.79 3.21
1443 1494 1.871676 TCGATAGTCGGGTTCTCGATG 59.128 52.381 0.00 0.00 40.88 3.84
1458 1509 0.681887 TCTGGAACCGCACCTCGATA 60.682 55.000 0.00 0.00 41.67 2.92
1571 1628 1.022735 GGATCATGAAGCTGCTGTGG 58.977 55.000 1.35 0.00 0.00 4.17
1594 1651 3.831911 GGTTTTCCCATTCCATGACTGAA 59.168 43.478 0.00 0.00 0.00 3.02
1595 1652 3.430453 GGTTTTCCCATTCCATGACTGA 58.570 45.455 0.00 0.00 0.00 3.41
1596 1653 2.164219 CGGTTTTCCCATTCCATGACTG 59.836 50.000 0.00 0.00 36.42 3.51
1597 1654 2.041081 TCGGTTTTCCCATTCCATGACT 59.959 45.455 0.00 0.00 36.42 3.41
1612 1669 1.741145 AGCGTGAACTTTGTTCGGTTT 59.259 42.857 6.05 0.00 0.00 3.27
1634 1691 3.119096 GCTGAAGTCGGAACCGCC 61.119 66.667 8.48 0.00 39.59 6.13
1636 1693 0.038159 AGAAGCTGAAGTCGGAACCG 60.038 55.000 6.94 6.94 41.35 4.44
1921 1978 2.557056 TGGTACCTTGAGAGTTGAGTCG 59.443 50.000 14.36 0.00 0.00 4.18
2010 2068 7.396055 AGCTTACATCTCTATATCTTCCCTGAC 59.604 40.741 0.00 0.00 0.00 3.51
2151 2209 1.277326 TTTCGCCGATGTGAAGATCG 58.723 50.000 3.04 3.04 41.68 3.69
2441 2506 8.522830 TCGATTCTCTTCAAAAAGGCAAATATT 58.477 29.630 0.00 0.00 33.03 1.28
2538 2604 5.937975 TGAGGATGTAATCTGTGATCACA 57.062 39.130 26.33 26.33 44.71 3.58
2674 2740 1.371758 CCTGATCATACCGTCGCCG 60.372 63.158 0.00 0.00 0.00 6.46
2692 2758 0.038166 TTTGTCCACCTGAGATGCCC 59.962 55.000 0.00 0.00 0.00 5.36
2704 2770 1.668751 GTGACACGCTTCTTTTGTCCA 59.331 47.619 0.00 0.00 39.16 4.02
2812 2878 8.621532 AGCATCTCGCCTATTTAAATTCAATA 57.378 30.769 5.91 0.00 44.04 1.90
2841 2908 1.529010 CAGTGCCTTTGCTGGTCCA 60.529 57.895 0.00 0.00 38.71 4.02
2844 2911 2.065899 TAAACAGTGCCTTTGCTGGT 57.934 45.000 0.00 0.00 38.71 4.00
2901 2968 4.560739 TGAGGGAGTTGATGATCTGGTAT 58.439 43.478 0.00 0.00 0.00 2.73
3183 3251 6.849151 TCCTAGTCCTAACATGTAGCATAGA 58.151 40.000 0.00 0.00 0.00 1.98
3215 3283 8.140677 GTGAATTCACAATGGAAAATGTCAAA 57.859 30.769 29.43 0.00 45.75 2.69
3277 3346 1.472728 GGTATGGCTCGTCATTTCGGT 60.473 52.381 0.00 0.00 0.00 4.69
3338 3407 1.080569 CTTGCGGCCAACATGGAAC 60.081 57.895 2.24 0.00 40.96 3.62
3574 3643 4.695455 CACGGGTAACATTCATCAGACTTT 59.305 41.667 0.00 0.00 39.74 2.66
3593 3662 1.808411 ATGAGCTGGTACAAACACGG 58.192 50.000 0.00 0.00 38.70 4.94
3594 3663 4.034048 GGATTATGAGCTGGTACAAACACG 59.966 45.833 0.00 0.00 38.70 4.49
3666 3735 0.102120 CACTCCATCCTCGACTGAGC 59.898 60.000 0.00 0.00 41.13 4.26
3697 3766 3.390521 AGGCCGAGGAACATCGCA 61.391 61.111 0.00 0.00 41.37 5.10
3838 3907 6.295518 CCAGAAATGATATCGGGATCTTGAGA 60.296 42.308 0.00 0.00 34.50 3.27
4030 4099 0.169672 CAAGCTGAGCAAATGACCCG 59.830 55.000 7.39 0.00 0.00 5.28
4036 4105 3.255149 CCAGAAGAACAAGCTGAGCAAAT 59.745 43.478 7.39 0.00 0.00 2.32
4138 4207 1.017387 GGAACTCGGCATGATGTTCC 58.983 55.000 17.37 17.37 42.37 3.62
4281 4357 2.307098 CTGATCAAGGGTCCAGGAAACT 59.693 50.000 0.00 0.00 46.44 2.66
4284 4360 1.909302 GACTGATCAAGGGTCCAGGAA 59.091 52.381 0.00 0.00 0.00 3.36
4438 4514 1.686355 CAAGTAAGGCACCAACACCA 58.314 50.000 0.00 0.00 0.00 4.17
4579 4655 4.125703 GCTGTGGATAGAAGAAGGATGTG 58.874 47.826 0.00 0.00 0.00 3.21
4702 4778 3.434309 CATTGGAAGGTGAATTCTGGGT 58.566 45.455 7.05 0.00 0.00 4.51
4902 4978 1.279496 TGCTTACCTGAGGCATGTCT 58.721 50.000 0.00 0.00 0.00 3.41
5058 5134 1.079503 GCCTGAAAGCTCCACTTACG 58.920 55.000 0.00 0.00 37.75 3.18
5139 5215 1.074248 AGTTTTCCGTCCCGCCAAT 59.926 52.632 0.00 0.00 0.00 3.16
5283 5359 2.874780 CACGCCGAGTACACGAGC 60.875 66.667 14.54 13.79 35.09 5.03
5425 5501 9.740239 AAACATCTGAATTCATAAAATGGATCG 57.260 29.630 8.96 4.61 0.00 3.69
5898 5974 3.557595 GCCTCACCTCAAAGTAATCGATG 59.442 47.826 0.00 0.00 0.00 3.84
6076 6156 1.067295 TGACACCCAAGGCATCTTCT 58.933 50.000 0.00 0.00 0.00 2.85
6114 6194 5.048224 ACATACCGGTATAGGTCAGAATTCG 60.048 44.000 26.37 11.80 44.68 3.34
6164 6244 9.265901 CTGAAACACTATCAAGAGAAGAAGAAA 57.734 33.333 0.00 0.00 0.00 2.52
6165 6245 8.424918 ACTGAAACACTATCAAGAGAAGAAGAA 58.575 33.333 0.00 0.00 0.00 2.52
6166 6246 7.957002 ACTGAAACACTATCAAGAGAAGAAGA 58.043 34.615 0.00 0.00 0.00 2.87
6167 6247 8.600449 AACTGAAACACTATCAAGAGAAGAAG 57.400 34.615 0.00 0.00 0.00 2.85
6168 6248 8.830580 CAAACTGAAACACTATCAAGAGAAGAA 58.169 33.333 0.00 0.00 0.00 2.52
6169 6249 7.987458 ACAAACTGAAACACTATCAAGAGAAGA 59.013 33.333 0.00 0.00 0.00 2.87
6170 6250 8.147642 ACAAACTGAAACACTATCAAGAGAAG 57.852 34.615 0.00 0.00 0.00 2.85
6171 6251 8.506168 AACAAACTGAAACACTATCAAGAGAA 57.494 30.769 0.00 0.00 0.00 2.87
6172 6252 8.506168 AAACAAACTGAAACACTATCAAGAGA 57.494 30.769 0.00 0.00 0.00 3.10
6206 6286 8.909923 TGCATTTGAATCAGTGAAATGATAGAT 58.090 29.630 16.12 0.00 39.00 1.98
6209 6289 8.305317 TGTTGCATTTGAATCAGTGAAATGATA 58.695 29.630 16.12 4.73 39.00 2.15
6233 6313 2.107204 AGCTTTGTTCCTCCTGACATGT 59.893 45.455 0.00 0.00 0.00 3.21
6236 6316 2.951642 CAAAGCTTTGTTCCTCCTGACA 59.048 45.455 27.59 0.00 33.59 3.58
6237 6317 3.214328 TCAAAGCTTTGTTCCTCCTGAC 58.786 45.455 32.46 0.00 39.18 3.51
6546 6628 2.424956 GCCGCTGAAAGGAAAGATGAAT 59.575 45.455 0.00 0.00 0.00 2.57
7724 7808 5.819379 AGAAAGATGCATACGGCCATATATG 59.181 40.000 2.24 8.88 43.89 1.78
7725 7809 5.819379 CAGAAAGATGCATACGGCCATATAT 59.181 40.000 2.24 0.00 43.89 0.86
7726 7810 5.046663 TCAGAAAGATGCATACGGCCATATA 60.047 40.000 2.24 0.00 43.89 0.86
7727 7811 4.005650 CAGAAAGATGCATACGGCCATAT 58.994 43.478 2.24 0.00 43.89 1.78
7728 7812 3.070878 TCAGAAAGATGCATACGGCCATA 59.929 43.478 2.24 0.00 43.89 2.74
7729 7813 2.158769 TCAGAAAGATGCATACGGCCAT 60.159 45.455 2.24 0.00 43.89 4.40
7730 7814 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
7731 7815 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
7732 7816 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
7741 7825 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
7742 7826 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
7743 7827 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
7744 7828 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
7745 7829 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
7746 7830 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
7747 7831 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
7763 7847 2.605837 TTTTCGAAAAGGGGTTTGCC 57.394 45.000 19.08 0.00 0.00 4.52
7783 7867 8.686334 GGGAACATGTATGATGTATCAACTTTT 58.314 33.333 0.00 0.00 40.69 2.27
7784 7868 8.055181 AGGGAACATGTATGATGTATCAACTTT 58.945 33.333 0.00 0.00 40.69 2.66
7785 7869 7.577303 AGGGAACATGTATGATGTATCAACTT 58.423 34.615 0.00 0.00 40.69 2.66
7786 7870 7.141758 AGGGAACATGTATGATGTATCAACT 57.858 36.000 0.00 0.00 40.69 3.16
7787 7871 7.307396 CGAAGGGAACATGTATGATGTATCAAC 60.307 40.741 0.00 0.66 40.69 3.18
7788 7872 6.705825 CGAAGGGAACATGTATGATGTATCAA 59.294 38.462 0.00 0.00 40.69 2.57
7789 7873 6.041523 TCGAAGGGAACATGTATGATGTATCA 59.958 38.462 0.00 0.00 41.70 2.15
7790 7874 6.455647 TCGAAGGGAACATGTATGATGTATC 58.544 40.000 0.00 0.00 0.00 2.24
7791 7875 6.419484 TCGAAGGGAACATGTATGATGTAT 57.581 37.500 0.00 0.00 0.00 2.29
7792 7876 5.862678 TCGAAGGGAACATGTATGATGTA 57.137 39.130 0.00 0.00 0.00 2.29
7793 7877 4.753516 TCGAAGGGAACATGTATGATGT 57.246 40.909 0.00 0.00 0.00 3.06
7794 7878 6.094048 ACTTTTCGAAGGGAACATGTATGATG 59.906 38.462 0.00 0.00 33.42 3.07
7795 7879 6.180472 ACTTTTCGAAGGGAACATGTATGAT 58.820 36.000 0.00 0.00 33.42 2.45
7796 7880 5.556915 ACTTTTCGAAGGGAACATGTATGA 58.443 37.500 0.00 0.00 33.42 2.15
7797 7881 5.163754 GGACTTTTCGAAGGGAACATGTATG 60.164 44.000 0.00 0.00 33.42 2.39
7798 7882 4.941873 GGACTTTTCGAAGGGAACATGTAT 59.058 41.667 0.00 0.00 33.42 2.29
7799 7883 4.202377 TGGACTTTTCGAAGGGAACATGTA 60.202 41.667 0.00 0.00 33.42 2.29
7800 7884 3.146847 GGACTTTTCGAAGGGAACATGT 58.853 45.455 0.00 0.00 33.42 3.21
7801 7885 3.146066 TGGACTTTTCGAAGGGAACATG 58.854 45.455 0.00 0.00 33.42 3.21
7802 7886 3.502123 TGGACTTTTCGAAGGGAACAT 57.498 42.857 0.00 0.00 33.42 2.71
7803 7887 3.502123 ATGGACTTTTCGAAGGGAACA 57.498 42.857 0.00 0.00 33.42 3.18
7828 7912 8.306761 CAAGTCATCTTTTAGGCCATTTTAGTT 58.693 33.333 5.01 0.00 0.00 2.24
7834 7918 3.448660 GCCAAGTCATCTTTTAGGCCATT 59.551 43.478 5.01 0.00 35.52 3.16
7859 7943 8.842358 TCCCACAATATTCTTCGGAATTATAC 57.158 34.615 0.00 0.00 41.41 1.47
7906 7990 3.222603 ACCCAGTTTCCAAAGCTAGTTG 58.777 45.455 0.00 0.00 0.00 3.16
7959 8043 4.972514 TGTATGCTGAACACAAACACAA 57.027 36.364 0.00 0.00 0.00 3.33
8007 8091 6.344390 GCCAAAACGTCTTACATTTGTTTACG 60.344 38.462 7.22 9.27 32.84 3.18
8157 8245 7.976734 AGATAGTAACTGAATTTGAGAACCTCG 59.023 37.037 0.00 0.00 32.35 4.63
8238 8327 8.593679 TCGATTTCTTAGGGCTATGATGAAATA 58.406 33.333 0.00 0.00 34.25 1.40
8260 8410 7.118390 GCATTAGTCTTATGCTACCATTTCGAT 59.882 37.037 15.04 0.00 43.86 3.59
8288 8438 7.499563 AGTTCATTAGCTAGTCTCGATTCTACA 59.500 37.037 0.00 0.00 0.00 2.74
8299 8449 6.857956 TGTTCTCAGAGTTCATTAGCTAGTC 58.142 40.000 0.00 0.00 0.00 2.59
8345 8497 5.599999 AGTCCGTACTTAAATCTGCAGAT 57.400 39.130 23.75 23.75 31.17 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.