Multiple sequence alignment - TraesCS6B01G205400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G205400 chr6B 100.000 3620 0 0 1 3620 257334261 257330642 0.000000e+00 6685.0
1 TraesCS6B01G205400 chr6B 80.672 119 14 7 654 765 134490183 134490067 2.320000e-12 84.2
2 TraesCS6B01G205400 chr6A 94.136 1893 103 4 777 2667 202978170 202980056 0.000000e+00 2874.0
3 TraesCS6B01G205400 chr6A 91.209 637 43 4 1 636 606072746 606073370 0.000000e+00 854.0
4 TraesCS6B01G205400 chr6A 75.543 875 175 24 1032 1894 120130162 120129315 9.420000e-106 394.0
5 TraesCS6B01G205400 chr6A 76.499 617 127 13 1988 2598 203522830 203523434 1.620000e-83 320.0
6 TraesCS6B01G205400 chr6A 86.486 111 12 2 649 756 520768408 520768298 6.350000e-23 119.0
7 TraesCS6B01G205400 chr6A 80.153 131 13 10 637 757 447636771 447636898 6.440000e-13 86.1
8 TraesCS6B01G205400 chr5B 93.125 640 42 2 1 639 629603394 629602756 0.000000e+00 937.0
9 TraesCS6B01G205400 chr5B 89.612 645 50 5 1 644 472796332 472796960 0.000000e+00 804.0
10 TraesCS6B01G205400 chr5B 86.164 318 35 5 2669 2981 600072334 600072647 5.790000e-88 335.0
11 TraesCS6B01G205400 chr7D 93.365 633 37 2 4 636 105871107 105871734 0.000000e+00 931.0
12 TraesCS6B01G205400 chr7D 92.733 633 45 1 4 636 196997884 196998515 0.000000e+00 913.0
13 TraesCS6B01G205400 chr7D 92.215 578 42 3 3045 3620 543554372 543554948 0.000000e+00 815.0
14 TraesCS6B01G205400 chr3D 92.936 637 44 1 4 640 289591199 289590564 0.000000e+00 926.0
15 TraesCS6B01G205400 chr3D 81.105 778 123 12 1324 2093 436939178 436938417 5.170000e-168 601.0
16 TraesCS6B01G205400 chr3D 84.825 514 67 6 1428 1934 437006967 437006458 1.160000e-139 507.0
17 TraesCS6B01G205400 chr3D 85.606 132 16 3 885 1015 437021871 437021742 6.300000e-28 135.0
18 TraesCS6B01G205400 chr3A 93.241 577 35 4 3048 3620 62420012 62420588 0.000000e+00 846.0
19 TraesCS6B01G205400 chr3A 92.794 569 38 3 3048 3613 38326275 38325707 0.000000e+00 821.0
20 TraesCS6B01G205400 chr3A 91.667 576 45 3 3048 3620 517776225 517776800 0.000000e+00 795.0
21 TraesCS6B01G205400 chr3A 79.216 255 36 12 858 1102 575097763 575097516 1.040000e-35 161.0
22 TraesCS6B01G205400 chr3A 82.759 116 10 9 642 749 419473139 419473252 1.070000e-15 95.3
23 TraesCS6B01G205400 chr4A 92.870 575 37 4 3049 3620 30354634 30354061 0.000000e+00 832.0
24 TraesCS6B01G205400 chr4A 90.334 569 52 3 3055 3620 29170932 29170364 0.000000e+00 743.0
25 TraesCS6B01G205400 chr7B 92.882 576 33 6 3048 3620 541717393 541717963 0.000000e+00 830.0
26 TraesCS6B01G205400 chr7B 89.809 314 26 4 2672 2982 486324036 486324346 7.280000e-107 398.0
27 TraesCS6B01G205400 chr7B 89.172 314 29 5 2665 2978 106752038 106752346 1.580000e-103 387.0
28 TraesCS6B01G205400 chr4D 92.374 577 40 3 3048 3620 52216466 52217042 0.000000e+00 819.0
29 TraesCS6B01G205400 chr4D 85.859 99 11 2 661 756 507787725 507787823 6.390000e-18 102.0
30 TraesCS6B01G205400 chr5D 92.188 576 38 5 3048 3620 493424318 493424889 0.000000e+00 808.0
31 TraesCS6B01G205400 chr5D 88.700 646 52 9 1 645 392025766 392026391 0.000000e+00 769.0
32 TraesCS6B01G205400 chr5D 88.650 326 33 3 2652 2977 468044290 468044611 9.420000e-106 394.0
33 TraesCS6B01G205400 chr2B 89.744 312 28 3 2671 2982 99087999 99087692 2.620000e-106 396.0
34 TraesCS6B01G205400 chr2B 89.677 310 29 2 2669 2978 65959464 65959770 3.390000e-105 392.0
35 TraesCS6B01G205400 chr2B 76.786 616 133 9 1988 2598 103961934 103962544 1.610000e-88 337.0
36 TraesCS6B01G205400 chr2B 76.221 614 140 6 1988 2598 103924610 103925220 1.620000e-83 320.0
37 TraesCS6B01G205400 chr2B 82.143 112 17 1 648 756 25220921 25220810 3.850000e-15 93.5
38 TraesCS6B01G205400 chr2B 82.051 117 14 6 526 639 455096858 455096970 3.850000e-15 93.5
39 TraesCS6B01G205400 chr2B 82.143 112 17 2 648 756 787530774 787530885 3.850000e-15 93.5
40 TraesCS6B01G205400 chr6D 76.293 793 156 23 1112 1894 100568681 100567911 9.420000e-106 394.0
41 TraesCS6B01G205400 chr6D 77.124 612 132 8 1991 2598 144089819 144089212 7.440000e-92 348.0
42 TraesCS6B01G205400 chr1A 90.559 286 24 3 2671 2956 405351135 405350853 3.410000e-100 375.0
43 TraesCS6B01G205400 chr3B 92.607 257 14 4 2669 2923 13413558 13413305 7.390000e-97 364.0
44 TraesCS6B01G205400 chr2D 85.761 309 30 7 2672 2979 603403637 603403342 7.550000e-82 315.0
45 TraesCS6B01G205400 chr7A 85.849 106 12 1 654 756 523616 523721 3.820000e-20 110.0
46 TraesCS6B01G205400 chr7A 83.784 111 15 2 648 755 287885382 287885272 6.390000e-18 102.0
47 TraesCS6B01G205400 chr1B 82.178 101 12 5 539 636 651885453 651885356 8.330000e-12 82.4
48 TraesCS6B01G205400 chr2A 80.556 108 13 7 535 639 480375258 480375360 3.880000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G205400 chr6B 257330642 257334261 3619 True 6685 6685 100.000 1 3620 1 chr6B.!!$R2 3619
1 TraesCS6B01G205400 chr6A 202978170 202980056 1886 False 2874 2874 94.136 777 2667 1 chr6A.!!$F1 1890
2 TraesCS6B01G205400 chr6A 606072746 606073370 624 False 854 854 91.209 1 636 1 chr6A.!!$F4 635
3 TraesCS6B01G205400 chr6A 120129315 120130162 847 True 394 394 75.543 1032 1894 1 chr6A.!!$R1 862
4 TraesCS6B01G205400 chr6A 203522830 203523434 604 False 320 320 76.499 1988 2598 1 chr6A.!!$F2 610
5 TraesCS6B01G205400 chr5B 629602756 629603394 638 True 937 937 93.125 1 639 1 chr5B.!!$R1 638
6 TraesCS6B01G205400 chr5B 472796332 472796960 628 False 804 804 89.612 1 644 1 chr5B.!!$F1 643
7 TraesCS6B01G205400 chr7D 105871107 105871734 627 False 931 931 93.365 4 636 1 chr7D.!!$F1 632
8 TraesCS6B01G205400 chr7D 196997884 196998515 631 False 913 913 92.733 4 636 1 chr7D.!!$F2 632
9 TraesCS6B01G205400 chr7D 543554372 543554948 576 False 815 815 92.215 3045 3620 1 chr7D.!!$F3 575
10 TraesCS6B01G205400 chr3D 289590564 289591199 635 True 926 926 92.936 4 640 1 chr3D.!!$R1 636
11 TraesCS6B01G205400 chr3D 436938417 436939178 761 True 601 601 81.105 1324 2093 1 chr3D.!!$R2 769
12 TraesCS6B01G205400 chr3D 437006458 437006967 509 True 507 507 84.825 1428 1934 1 chr3D.!!$R3 506
13 TraesCS6B01G205400 chr3A 62420012 62420588 576 False 846 846 93.241 3048 3620 1 chr3A.!!$F1 572
14 TraesCS6B01G205400 chr3A 38325707 38326275 568 True 821 821 92.794 3048 3613 1 chr3A.!!$R1 565
15 TraesCS6B01G205400 chr3A 517776225 517776800 575 False 795 795 91.667 3048 3620 1 chr3A.!!$F3 572
16 TraesCS6B01G205400 chr4A 30354061 30354634 573 True 832 832 92.870 3049 3620 1 chr4A.!!$R2 571
17 TraesCS6B01G205400 chr4A 29170364 29170932 568 True 743 743 90.334 3055 3620 1 chr4A.!!$R1 565
18 TraesCS6B01G205400 chr7B 541717393 541717963 570 False 830 830 92.882 3048 3620 1 chr7B.!!$F3 572
19 TraesCS6B01G205400 chr4D 52216466 52217042 576 False 819 819 92.374 3048 3620 1 chr4D.!!$F1 572
20 TraesCS6B01G205400 chr5D 493424318 493424889 571 False 808 808 92.188 3048 3620 1 chr5D.!!$F3 572
21 TraesCS6B01G205400 chr5D 392025766 392026391 625 False 769 769 88.700 1 645 1 chr5D.!!$F1 644
22 TraesCS6B01G205400 chr2B 103961934 103962544 610 False 337 337 76.786 1988 2598 1 chr2B.!!$F3 610
23 TraesCS6B01G205400 chr2B 103924610 103925220 610 False 320 320 76.221 1988 2598 1 chr2B.!!$F2 610
24 TraesCS6B01G205400 chr6D 100567911 100568681 770 True 394 394 76.293 1112 1894 1 chr6D.!!$R1 782
25 TraesCS6B01G205400 chr6D 144089212 144089819 607 True 348 348 77.124 1991 2598 1 chr6D.!!$R2 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 993 0.036952 CGGCCATCGATCCATAGCTT 60.037 55.0 2.24 0.0 42.43 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 2690 0.040204 ACTGGAAAAGGGCCTGATGG 59.96 55.0 6.92 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.522569 GGCTACCGTTGGAGATGCT 59.477 57.895 0.00 0.00 0.00 3.79
68 69 3.460857 GTTGGAGATGCTCTAACGGAT 57.539 47.619 7.71 0.00 40.83 4.18
71 72 2.766263 TGGAGATGCTCTAACGGATGTT 59.234 45.455 0.00 0.00 42.19 2.71
112 113 2.626780 GGCGAAGAAAGTGGGTGGC 61.627 63.158 0.00 0.00 0.00 5.01
230 242 8.958506 ACACGGGCAATTAACTATGTAAAAATA 58.041 29.630 0.00 0.00 0.00 1.40
231 243 9.959749 CACGGGCAATTAACTATGTAAAAATAT 57.040 29.630 0.00 0.00 0.00 1.28
295 307 1.462283 CTGCACATCGAGTTTGGTCAG 59.538 52.381 0.00 0.00 0.00 3.51
349 361 1.374758 CACGCCGCCTCTTCTCTTT 60.375 57.895 0.00 0.00 0.00 2.52
355 367 1.623359 CGCCTCTTCTCTTTGTCTCG 58.377 55.000 0.00 0.00 0.00 4.04
386 398 4.109050 GTGCGTCAAAGAACAAATCCAAA 58.891 39.130 0.00 0.00 0.00 3.28
457 469 3.449377 TCATAGGCCAGTCGATTGTTGTA 59.551 43.478 5.01 0.00 0.00 2.41
523 535 9.010366 GCTCGTAATTTCAATTATCTTTTGTCC 57.990 33.333 0.00 0.00 33.79 4.02
612 628 4.657436 ACAAACATTTAAAAGCCCGTGA 57.343 36.364 0.00 0.00 0.00 4.35
616 632 4.237349 ACATTTAAAAGCCCGTGACAAG 57.763 40.909 0.00 0.00 0.00 3.16
617 633 3.886505 ACATTTAAAAGCCCGTGACAAGA 59.113 39.130 0.00 0.00 0.00 3.02
631 647 4.495422 GTGACAAGACACGGACATTCTAT 58.505 43.478 0.00 0.00 0.00 1.98
640 656 8.008513 AGACACGGACATTCTATTAGTAATGT 57.991 34.615 15.38 15.38 46.29 2.71
641 657 9.128404 AGACACGGACATTCTATTAGTAATGTA 57.872 33.333 15.41 0.00 44.27 2.29
642 658 9.909644 GACACGGACATTCTATTAGTAATGTAT 57.090 33.333 15.41 7.27 44.27 2.29
662 678 9.866655 AATGTATAATAAATGAAAGAGCCCTGA 57.133 29.630 0.00 0.00 0.00 3.86
663 679 8.908786 TGTATAATAAATGAAAGAGCCCTGAG 57.091 34.615 0.00 0.00 0.00 3.35
664 680 8.713971 TGTATAATAAATGAAAGAGCCCTGAGA 58.286 33.333 0.00 0.00 0.00 3.27
665 681 9.561069 GTATAATAAATGAAAGAGCCCTGAGAA 57.439 33.333 0.00 0.00 0.00 2.87
667 683 7.968014 AATAAATGAAAGAGCCCTGAGAAAT 57.032 32.000 0.00 0.00 0.00 2.17
668 684 7.968014 ATAAATGAAAGAGCCCTGAGAAATT 57.032 32.000 0.00 0.00 0.00 1.82
669 685 5.656213 AATGAAAGAGCCCTGAGAAATTG 57.344 39.130 0.00 0.00 0.00 2.32
670 686 4.104383 TGAAAGAGCCCTGAGAAATTGT 57.896 40.909 0.00 0.00 0.00 2.71
671 687 4.473444 TGAAAGAGCCCTGAGAAATTGTT 58.527 39.130 0.00 0.00 0.00 2.83
672 688 4.279169 TGAAAGAGCCCTGAGAAATTGTTG 59.721 41.667 0.00 0.00 0.00 3.33
673 689 3.795688 AGAGCCCTGAGAAATTGTTGA 57.204 42.857 0.00 0.00 0.00 3.18
674 690 3.416156 AGAGCCCTGAGAAATTGTTGAC 58.584 45.455 0.00 0.00 0.00 3.18
675 691 2.489722 GAGCCCTGAGAAATTGTTGACC 59.510 50.000 0.00 0.00 0.00 4.02
676 692 1.546029 GCCCTGAGAAATTGTTGACCC 59.454 52.381 0.00 0.00 0.00 4.46
677 693 1.812571 CCCTGAGAAATTGTTGACCCG 59.187 52.381 0.00 0.00 0.00 5.28
678 694 1.812571 CCTGAGAAATTGTTGACCCGG 59.187 52.381 0.00 0.00 0.00 5.73
679 695 2.504367 CTGAGAAATTGTTGACCCGGT 58.496 47.619 0.00 0.00 0.00 5.28
680 696 2.484264 CTGAGAAATTGTTGACCCGGTC 59.516 50.000 10.96 10.96 0.00 4.79
681 697 2.158740 TGAGAAATTGTTGACCCGGTCA 60.159 45.455 16.73 16.73 41.09 4.02
691 707 3.932545 TGACCCGGTCAAAATTGAATG 57.067 42.857 18.34 0.00 39.78 2.67
692 708 3.491342 TGACCCGGTCAAAATTGAATGA 58.509 40.909 18.34 0.00 39.78 2.57
693 709 3.254657 TGACCCGGTCAAAATTGAATGAC 59.745 43.478 18.34 9.61 39.78 3.06
694 710 3.496331 ACCCGGTCAAAATTGAATGACT 58.504 40.909 15.02 0.00 44.20 3.41
695 711 3.506067 ACCCGGTCAAAATTGAATGACTC 59.494 43.478 15.02 7.78 44.20 3.36
696 712 3.758554 CCCGGTCAAAATTGAATGACTCT 59.241 43.478 15.02 0.00 44.20 3.24
697 713 4.218417 CCCGGTCAAAATTGAATGACTCTT 59.782 41.667 15.02 0.00 44.20 2.85
698 714 5.393962 CCGGTCAAAATTGAATGACTCTTC 58.606 41.667 15.02 2.99 44.20 2.87
699 715 5.048782 CCGGTCAAAATTGAATGACTCTTCA 60.049 40.000 15.02 0.00 44.20 3.02
700 716 6.437928 CGGTCAAAATTGAATGACTCTTCAA 58.562 36.000 15.02 2.11 46.13 2.69
710 726 7.587037 TGAATGACTCTTCAATTGAAAACCT 57.413 32.000 20.82 4.92 34.61 3.50
711 727 7.651808 TGAATGACTCTTCAATTGAAAACCTC 58.348 34.615 20.82 13.04 34.61 3.85
712 728 7.285172 TGAATGACTCTTCAATTGAAAACCTCA 59.715 33.333 20.82 17.27 34.61 3.86
713 729 7.587037 ATGACTCTTCAATTGAAAACCTCAA 57.413 32.000 20.82 5.46 39.98 3.02
724 740 6.477053 TTGAAAACCTCAATTCAATGTGGA 57.523 33.333 2.70 0.00 39.81 4.02
725 741 6.669125 TGAAAACCTCAATTCAATGTGGAT 57.331 33.333 2.70 0.00 37.39 3.41
726 742 7.065120 TGAAAACCTCAATTCAATGTGGATT 57.935 32.000 2.70 0.00 37.39 3.01
727 743 7.153985 TGAAAACCTCAATTCAATGTGGATTC 58.846 34.615 2.70 6.93 37.39 2.52
728 744 6.923199 AAACCTCAATTCAATGTGGATTCT 57.077 33.333 2.70 0.00 37.39 2.40
729 745 6.923199 AACCTCAATTCAATGTGGATTCTT 57.077 33.333 2.70 0.00 37.39 2.52
730 746 6.923199 ACCTCAATTCAATGTGGATTCTTT 57.077 33.333 2.70 0.00 37.39 2.52
731 747 8.421249 AACCTCAATTCAATGTGGATTCTTTA 57.579 30.769 2.70 0.00 37.39 1.85
732 748 8.421249 ACCTCAATTCAATGTGGATTCTTTAA 57.579 30.769 2.70 0.00 37.39 1.52
733 749 8.869109 ACCTCAATTCAATGTGGATTCTTTAAA 58.131 29.630 2.70 0.00 37.39 1.52
734 750 9.709495 CCTCAATTCAATGTGGATTCTTTAAAA 57.291 29.630 0.00 0.00 36.32 1.52
741 757 9.540538 TCAATGTGGATTCTTTAAAATTAGGGA 57.459 29.630 0.00 0.00 0.00 4.20
742 758 9.807649 CAATGTGGATTCTTTAAAATTAGGGAG 57.192 33.333 0.00 0.00 0.00 4.30
743 759 7.404671 TGTGGATTCTTTAAAATTAGGGAGC 57.595 36.000 0.00 0.00 0.00 4.70
744 760 6.951198 TGTGGATTCTTTAAAATTAGGGAGCA 59.049 34.615 0.00 0.00 0.00 4.26
745 761 7.619302 TGTGGATTCTTTAAAATTAGGGAGCAT 59.381 33.333 0.00 0.00 0.00 3.79
746 762 9.131791 GTGGATTCTTTAAAATTAGGGAGCATA 57.868 33.333 0.00 0.00 0.00 3.14
747 763 9.354673 TGGATTCTTTAAAATTAGGGAGCATAG 57.645 33.333 0.00 0.00 0.00 2.23
748 764 9.355916 GGATTCTTTAAAATTAGGGAGCATAGT 57.644 33.333 0.00 0.00 0.00 2.12
750 766 9.700831 ATTCTTTAAAATTAGGGAGCATAGTGT 57.299 29.630 0.00 0.00 0.00 3.55
751 767 9.528489 TTCTTTAAAATTAGGGAGCATAGTGTT 57.472 29.630 0.00 0.00 0.00 3.32
757 773 9.780186 AAAATTAGGGAGCATAGTGTTATAGTC 57.220 33.333 0.00 0.00 0.00 2.59
758 774 8.728596 AATTAGGGAGCATAGTGTTATAGTCT 57.271 34.615 0.00 0.00 0.00 3.24
759 775 8.728596 ATTAGGGAGCATAGTGTTATAGTCTT 57.271 34.615 0.00 0.00 0.00 3.01
760 776 9.824216 ATTAGGGAGCATAGTGTTATAGTCTTA 57.176 33.333 0.00 0.00 0.00 2.10
761 777 9.824216 TTAGGGAGCATAGTGTTATAGTCTTAT 57.176 33.333 0.00 0.00 0.00 1.73
763 779 9.469097 AGGGAGCATAGTGTTATAGTCTTATAG 57.531 37.037 0.00 0.00 0.00 1.31
764 780 9.463902 GGGAGCATAGTGTTATAGTCTTATAGA 57.536 37.037 0.00 0.00 0.00 1.98
768 784 9.938670 GCATAGTGTTATAGTCTTATAGATCGG 57.061 37.037 0.00 0.00 0.00 4.18
802 818 4.697514 AGATATCTCCAAATGTCACCGTG 58.302 43.478 0.00 0.00 0.00 4.94
841 857 9.710818 ATAATATAGACAACACCGTATATCCCT 57.289 33.333 0.00 0.00 0.00 4.20
863 879 2.645802 GGATAGATAGCGAGGGACGAT 58.354 52.381 0.00 0.00 45.77 3.73
864 880 3.433314 GGGATAGATAGCGAGGGACGATA 60.433 52.174 0.00 0.00 46.50 2.92
887 903 1.088340 CGCTGACCTGCCTGAATGAG 61.088 60.000 0.00 0.00 0.00 2.90
926 942 3.609644 CGTCCACGCTCCTTATAAGCTAG 60.610 52.174 6.99 7.67 37.62 3.42
927 943 2.296471 TCCACGCTCCTTATAAGCTAGC 59.704 50.000 20.21 20.21 37.62 3.42
950 966 2.359850 GCCTGGGCGATGTTGTGA 60.360 61.111 0.00 0.00 0.00 3.58
977 993 0.036952 CGGCCATCGATCCATAGCTT 60.037 55.000 2.24 0.00 42.43 3.74
1012 1028 2.341875 CGCACAATGGCCATGGTGA 61.342 57.895 44.49 9.25 43.78 4.02
1013 1029 1.514087 GCACAATGGCCATGGTGAG 59.486 57.895 44.49 27.77 43.78 3.51
1038 1054 2.435059 GCCTCCTGGTTCTGCGTC 60.435 66.667 0.00 0.00 35.27 5.19
1039 1055 3.059982 CCTCCTGGTTCTGCGTCA 58.940 61.111 0.00 0.00 0.00 4.35
1205 1224 4.794439 CATCGCCGACCTCGCACA 62.794 66.667 0.00 0.00 38.18 4.57
1296 1315 2.747686 GCTCGGGAGGTCACCAAA 59.252 61.111 0.00 0.00 0.00 3.28
1575 1594 2.891936 GCGCTCATGACGGATGCA 60.892 61.111 15.96 0.00 31.32 3.96
1579 1598 1.212616 GCTCATGACGGATGCAGTAC 58.787 55.000 0.00 0.00 31.32 2.73
1918 1943 1.002366 CATCCGAGTAAGTGTGCTGC 58.998 55.000 0.00 0.00 0.00 5.25
1919 1944 0.898320 ATCCGAGTAAGTGTGCTGCT 59.102 50.000 0.00 0.00 0.00 4.24
1920 1945 0.038251 TCCGAGTAAGTGTGCTGCTG 60.038 55.000 0.00 0.00 0.00 4.41
1946 1971 7.326968 TGTATGTCCGAATGCATAATTTGAA 57.673 32.000 0.00 0.00 31.96 2.69
1964 1989 4.743057 TGAACCGACATTCTGATCTCAT 57.257 40.909 0.00 0.00 0.00 2.90
2068 2095 0.462759 GGAGCTCATGAGAAACCCGG 60.463 60.000 27.04 0.00 0.00 5.73
2214 2241 3.818787 GCGGTGCCATTGCTCCTG 61.819 66.667 8.11 3.58 46.64 3.86
2295 2322 0.960861 TGTTTGTGAACGTGTGGGCA 60.961 50.000 0.00 0.00 38.65 5.36
2343 2370 0.533308 ACGCCGAAGTGTTTAAGCCA 60.533 50.000 0.00 0.00 30.76 4.75
2347 2374 2.870435 GCCGAAGTGTTTAAGCCAGAGA 60.870 50.000 0.00 0.00 0.00 3.10
2349 2376 2.996621 CGAAGTGTTTAAGCCAGAGAGG 59.003 50.000 0.00 0.00 41.84 3.69
2358 2385 0.039035 AGCCAGAGAGGTTCGAGAGT 59.961 55.000 0.00 0.00 40.61 3.24
2362 2389 0.968393 AGAGAGGTTCGAGAGTGGCC 60.968 60.000 0.00 0.00 0.00 5.36
2367 2394 0.744771 GGTTCGAGAGTGGCCCAATC 60.745 60.000 2.20 2.20 0.00 2.67
2382 2409 1.818060 CCAATCGATTTCAAGGGCACA 59.182 47.619 8.21 0.00 0.00 4.57
2519 2546 1.202533 CCCGCTTGGAGTATCACGAAT 60.203 52.381 0.00 0.00 36.25 3.34
2527 2554 2.290916 GGAGTATCACGAATCGAGCTGA 59.709 50.000 10.55 2.90 36.25 4.26
2542 2569 1.375098 GCTGAACATGGCAGAGGAGC 61.375 60.000 18.56 3.43 35.39 4.70
2571 2598 0.811281 CCATCCAAAGGAAGAACGGC 59.189 55.000 0.00 0.00 34.34 5.68
2631 2658 3.522731 CTCTAGGCTGTCGCGGCT 61.523 66.667 13.81 0.65 42.91 5.52
2637 2664 4.389576 GCTGTCGCGGCTTTGTGG 62.390 66.667 13.81 0.00 32.24 4.17
2646 2673 3.056328 GCTTTGTGGCCTCGTCCC 61.056 66.667 3.32 0.00 0.00 4.46
2663 2690 1.662044 CCAAGGTTTGTGCTGCCTC 59.338 57.895 0.00 0.00 0.00 4.70
2667 2694 0.610232 AGGTTTGTGCTGCCTCCATC 60.610 55.000 0.00 0.00 0.00 3.51
2668 2695 0.895100 GGTTTGTGCTGCCTCCATCA 60.895 55.000 0.00 0.00 0.00 3.07
2669 2696 0.524862 GTTTGTGCTGCCTCCATCAG 59.475 55.000 0.00 0.00 34.79 2.90
2670 2697 0.609957 TTTGTGCTGCCTCCATCAGG 60.610 55.000 0.00 0.00 46.82 3.86
2678 2705 3.197664 CCTCCATCAGGCCCTTTTC 57.802 57.895 0.00 0.00 34.56 2.29
2679 2706 0.396278 CCTCCATCAGGCCCTTTTCC 60.396 60.000 0.00 0.00 34.56 3.13
2680 2707 0.332632 CTCCATCAGGCCCTTTTCCA 59.667 55.000 0.00 0.00 33.74 3.53
2681 2708 0.332632 TCCATCAGGCCCTTTTCCAG 59.667 55.000 0.00 0.00 33.74 3.86
2682 2709 0.040204 CCATCAGGCCCTTTTCCAGT 59.960 55.000 0.00 0.00 0.00 4.00
2683 2710 1.180029 CATCAGGCCCTTTTCCAGTG 58.820 55.000 0.00 0.00 0.00 3.66
2684 2711 0.613012 ATCAGGCCCTTTTCCAGTGC 60.613 55.000 0.00 0.00 0.00 4.40
2685 2712 1.228675 CAGGCCCTTTTCCAGTGCT 60.229 57.895 0.00 0.00 0.00 4.40
2686 2713 1.075659 AGGCCCTTTTCCAGTGCTC 59.924 57.895 0.00 0.00 0.00 4.26
2687 2714 1.979155 GGCCCTTTTCCAGTGCTCC 60.979 63.158 0.00 0.00 0.00 4.70
2688 2715 1.228552 GCCCTTTTCCAGTGCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
2689 2716 0.827507 GCCCTTTTCCAGTGCTCCAA 60.828 55.000 0.00 0.00 0.00 3.53
2690 2717 1.251251 CCCTTTTCCAGTGCTCCAAG 58.749 55.000 0.00 0.00 0.00 3.61
2691 2718 1.202927 CCCTTTTCCAGTGCTCCAAGA 60.203 52.381 0.00 0.00 0.00 3.02
2692 2719 2.556114 CCCTTTTCCAGTGCTCCAAGAT 60.556 50.000 0.00 0.00 0.00 2.40
2693 2720 2.490903 CCTTTTCCAGTGCTCCAAGATG 59.509 50.000 0.00 0.00 0.00 2.90
2694 2721 2.957402 TTTCCAGTGCTCCAAGATGT 57.043 45.000 0.00 0.00 0.00 3.06
2695 2722 4.326826 CTTTTCCAGTGCTCCAAGATGTA 58.673 43.478 0.00 0.00 0.00 2.29
2696 2723 3.334583 TTCCAGTGCTCCAAGATGTAC 57.665 47.619 0.00 0.00 0.00 2.90
2697 2724 2.256306 TCCAGTGCTCCAAGATGTACA 58.744 47.619 0.00 0.00 0.00 2.90
2698 2725 2.234661 TCCAGTGCTCCAAGATGTACAG 59.765 50.000 0.33 0.00 0.00 2.74
2699 2726 2.625737 CAGTGCTCCAAGATGTACAGG 58.374 52.381 0.33 0.00 0.00 4.00
2700 2727 2.027745 CAGTGCTCCAAGATGTACAGGT 60.028 50.000 0.33 0.00 0.00 4.00
2701 2728 2.027745 AGTGCTCCAAGATGTACAGGTG 60.028 50.000 0.33 0.00 0.00 4.00
2702 2729 1.339055 TGCTCCAAGATGTACAGGTGC 60.339 52.381 15.36 15.36 40.15 5.01
2703 2730 1.065854 GCTCCAAGATGTACAGGTGCT 60.066 52.381 15.09 2.58 37.59 4.40
2704 2731 2.168521 GCTCCAAGATGTACAGGTGCTA 59.831 50.000 15.09 0.08 37.59 3.49
2705 2732 3.369471 GCTCCAAGATGTACAGGTGCTAA 60.369 47.826 15.09 0.00 37.59 3.09
2706 2733 4.437239 CTCCAAGATGTACAGGTGCTAAG 58.563 47.826 0.33 0.00 0.00 2.18
2707 2734 3.197766 TCCAAGATGTACAGGTGCTAAGG 59.802 47.826 0.33 3.05 0.00 2.69
2708 2735 3.197766 CCAAGATGTACAGGTGCTAAGGA 59.802 47.826 0.33 0.00 0.00 3.36
2709 2736 4.184629 CAAGATGTACAGGTGCTAAGGAC 58.815 47.826 0.33 0.00 0.00 3.85
2710 2737 2.427453 AGATGTACAGGTGCTAAGGACG 59.573 50.000 0.33 0.00 0.00 4.79
2711 2738 0.245539 TGTACAGGTGCTAAGGACGC 59.754 55.000 0.00 0.00 0.00 5.19
2712 2739 0.459759 GTACAGGTGCTAAGGACGCC 60.460 60.000 0.00 0.00 38.00 5.68
2713 2740 0.901114 TACAGGTGCTAAGGACGCCA 60.901 55.000 0.00 0.00 40.28 5.69
2714 2741 1.741770 CAGGTGCTAAGGACGCCAC 60.742 63.158 0.00 0.00 40.28 5.01
2715 2742 2.214216 AGGTGCTAAGGACGCCACA 61.214 57.895 0.00 0.00 40.28 4.17
2716 2743 1.078426 GGTGCTAAGGACGCCACAT 60.078 57.895 0.00 0.00 37.64 3.21
2717 2744 0.177141 GGTGCTAAGGACGCCACATA 59.823 55.000 0.00 0.00 37.64 2.29
2718 2745 1.571919 GTGCTAAGGACGCCACATAG 58.428 55.000 0.00 0.56 0.00 2.23
2719 2746 1.136305 GTGCTAAGGACGCCACATAGA 59.864 52.381 0.00 0.00 0.00 1.98
2720 2747 2.039418 TGCTAAGGACGCCACATAGAT 58.961 47.619 0.00 0.00 0.00 1.98
2721 2748 3.005472 GTGCTAAGGACGCCACATAGATA 59.995 47.826 0.00 0.00 0.00 1.98
2722 2749 3.639561 TGCTAAGGACGCCACATAGATAA 59.360 43.478 0.00 0.00 0.00 1.75
2723 2750 4.100344 TGCTAAGGACGCCACATAGATAAA 59.900 41.667 0.00 0.00 0.00 1.40
2724 2751 5.054477 GCTAAGGACGCCACATAGATAAAA 58.946 41.667 0.00 0.00 0.00 1.52
2725 2752 5.526111 GCTAAGGACGCCACATAGATAAAAA 59.474 40.000 0.00 0.00 0.00 1.94
2747 2774 7.507733 AAAAATGATGTGGCAAAGCAATTAA 57.492 28.000 0.00 0.00 0.00 1.40
2748 2775 7.507733 AAAATGATGTGGCAAAGCAATTAAA 57.492 28.000 0.00 0.00 0.00 1.52
2749 2776 6.730960 AATGATGTGGCAAAGCAATTAAAG 57.269 33.333 0.00 0.00 0.00 1.85
2750 2777 5.465532 TGATGTGGCAAAGCAATTAAAGA 57.534 34.783 0.00 0.00 0.00 2.52
2751 2778 5.472148 TGATGTGGCAAAGCAATTAAAGAG 58.528 37.500 0.00 0.00 0.00 2.85
2752 2779 4.255833 TGTGGCAAAGCAATTAAAGAGG 57.744 40.909 0.00 0.00 0.00 3.69
2753 2780 3.894427 TGTGGCAAAGCAATTAAAGAGGA 59.106 39.130 0.00 0.00 0.00 3.71
2754 2781 4.022068 TGTGGCAAAGCAATTAAAGAGGAG 60.022 41.667 0.00 0.00 0.00 3.69
2755 2782 4.218417 GTGGCAAAGCAATTAAAGAGGAGA 59.782 41.667 0.00 0.00 0.00 3.71
2756 2783 4.460382 TGGCAAAGCAATTAAAGAGGAGAG 59.540 41.667 0.00 0.00 0.00 3.20
2757 2784 4.702131 GGCAAAGCAATTAAAGAGGAGAGA 59.298 41.667 0.00 0.00 0.00 3.10
2758 2785 5.163673 GGCAAAGCAATTAAAGAGGAGAGAG 60.164 44.000 0.00 0.00 0.00 3.20
2759 2786 5.645497 GCAAAGCAATTAAAGAGGAGAGAGA 59.355 40.000 0.00 0.00 0.00 3.10
2760 2787 6.183360 GCAAAGCAATTAAAGAGGAGAGAGAG 60.183 42.308 0.00 0.00 0.00 3.20
2761 2788 6.865834 AAGCAATTAAAGAGGAGAGAGAGA 57.134 37.500 0.00 0.00 0.00 3.10
2762 2789 6.469782 AGCAATTAAAGAGGAGAGAGAGAG 57.530 41.667 0.00 0.00 0.00 3.20
2763 2790 5.049828 GCAATTAAAGAGGAGAGAGAGAGC 58.950 45.833 0.00 0.00 0.00 4.09
2764 2791 5.395103 GCAATTAAAGAGGAGAGAGAGAGCA 60.395 44.000 0.00 0.00 0.00 4.26
2765 2792 6.686126 GCAATTAAAGAGGAGAGAGAGAGCAT 60.686 42.308 0.00 0.00 0.00 3.79
2766 2793 7.274447 CAATTAAAGAGGAGAGAGAGAGCATT 58.726 38.462 0.00 0.00 0.00 3.56
2767 2794 8.420222 CAATTAAAGAGGAGAGAGAGAGCATTA 58.580 37.037 0.00 0.00 0.00 1.90
2768 2795 8.725606 ATTAAAGAGGAGAGAGAGAGCATTAT 57.274 34.615 0.00 0.00 0.00 1.28
2769 2796 6.409524 AAAGAGGAGAGAGAGAGCATTATG 57.590 41.667 0.00 0.00 0.00 1.90
2770 2797 5.323382 AGAGGAGAGAGAGAGCATTATGA 57.677 43.478 0.00 0.00 0.00 2.15
2771 2798 5.895807 AGAGGAGAGAGAGAGCATTATGAT 58.104 41.667 0.00 0.00 0.00 2.45
2772 2799 5.713389 AGAGGAGAGAGAGAGCATTATGATG 59.287 44.000 0.00 0.00 36.32 3.07
2773 2800 4.773674 AGGAGAGAGAGAGCATTATGATGG 59.226 45.833 0.00 0.00 33.72 3.51
2774 2801 4.497300 GAGAGAGAGAGCATTATGATGGC 58.503 47.826 0.00 0.00 33.72 4.40
2775 2802 3.261390 AGAGAGAGAGCATTATGATGGCC 59.739 47.826 0.00 0.00 33.72 5.36
2776 2803 2.305343 AGAGAGAGCATTATGATGGCCC 59.695 50.000 0.00 0.00 33.72 5.80
2777 2804 2.305343 GAGAGAGCATTATGATGGCCCT 59.695 50.000 0.00 0.00 33.72 5.19
2778 2805 3.517100 GAGAGAGCATTATGATGGCCCTA 59.483 47.826 0.00 0.00 33.72 3.53
2779 2806 3.518705 AGAGAGCATTATGATGGCCCTAG 59.481 47.826 0.00 0.00 33.72 3.02
2780 2807 3.517100 GAGAGCATTATGATGGCCCTAGA 59.483 47.826 0.00 0.00 33.72 2.43
2781 2808 3.912528 AGAGCATTATGATGGCCCTAGAA 59.087 43.478 0.00 0.00 33.72 2.10
2782 2809 4.352001 AGAGCATTATGATGGCCCTAGAAA 59.648 41.667 0.00 0.00 33.72 2.52
2783 2810 5.065613 AGCATTATGATGGCCCTAGAAAA 57.934 39.130 0.00 0.00 33.72 2.29
2784 2811 5.457686 AGCATTATGATGGCCCTAGAAAAA 58.542 37.500 0.00 0.00 33.72 1.94
2810 2837 2.616960 TGCTAAGCACACGAACCTATG 58.383 47.619 0.00 0.00 31.71 2.23
2811 2838 2.028476 TGCTAAGCACACGAACCTATGT 60.028 45.455 0.00 0.00 31.71 2.29
2812 2839 3.193903 TGCTAAGCACACGAACCTATGTA 59.806 43.478 0.00 0.00 31.71 2.29
2813 2840 4.178540 GCTAAGCACACGAACCTATGTAA 58.821 43.478 0.00 0.00 0.00 2.41
2814 2841 4.628333 GCTAAGCACACGAACCTATGTAAA 59.372 41.667 0.00 0.00 0.00 2.01
2815 2842 5.121142 GCTAAGCACACGAACCTATGTAAAA 59.879 40.000 0.00 0.00 0.00 1.52
2816 2843 6.347888 GCTAAGCACACGAACCTATGTAAAAA 60.348 38.462 0.00 0.00 0.00 1.94
2817 2844 5.607119 AGCACACGAACCTATGTAAAAAG 57.393 39.130 0.00 0.00 0.00 2.27
2818 2845 5.302360 AGCACACGAACCTATGTAAAAAGA 58.698 37.500 0.00 0.00 0.00 2.52
2819 2846 5.178809 AGCACACGAACCTATGTAAAAAGAC 59.821 40.000 0.00 0.00 0.00 3.01
2820 2847 5.178809 GCACACGAACCTATGTAAAAAGACT 59.821 40.000 0.00 0.00 0.00 3.24
2821 2848 6.366877 GCACACGAACCTATGTAAAAAGACTA 59.633 38.462 0.00 0.00 0.00 2.59
2822 2849 7.620806 GCACACGAACCTATGTAAAAAGACTAC 60.621 40.741 0.00 0.00 0.00 2.73
2823 2850 6.870439 ACACGAACCTATGTAAAAAGACTACC 59.130 38.462 0.00 0.00 0.00 3.18
2824 2851 6.869913 CACGAACCTATGTAAAAAGACTACCA 59.130 38.462 0.00 0.00 0.00 3.25
2825 2852 7.385752 CACGAACCTATGTAAAAAGACTACCAA 59.614 37.037 0.00 0.00 0.00 3.67
2826 2853 7.386025 ACGAACCTATGTAAAAAGACTACCAAC 59.614 37.037 0.00 0.00 0.00 3.77
2827 2854 7.148523 CGAACCTATGTAAAAAGACTACCAACC 60.149 40.741 0.00 0.00 0.00 3.77
2828 2855 7.081857 ACCTATGTAAAAAGACTACCAACCA 57.918 36.000 0.00 0.00 0.00 3.67
2829 2856 7.519927 ACCTATGTAAAAAGACTACCAACCAA 58.480 34.615 0.00 0.00 0.00 3.67
2830 2857 8.168058 ACCTATGTAAAAAGACTACCAACCAAT 58.832 33.333 0.00 0.00 0.00 3.16
2831 2858 9.675464 CCTATGTAAAAAGACTACCAACCAATA 57.325 33.333 0.00 0.00 0.00 1.90
2833 2860 8.927675 ATGTAAAAAGACTACCAACCAATACA 57.072 30.769 0.00 0.00 0.00 2.29
2834 2861 8.927675 TGTAAAAAGACTACCAACCAATACAT 57.072 30.769 0.00 0.00 0.00 2.29
2835 2862 8.788806 TGTAAAAAGACTACCAACCAATACATG 58.211 33.333 0.00 0.00 0.00 3.21
2836 2863 9.005777 GTAAAAAGACTACCAACCAATACATGA 57.994 33.333 0.00 0.00 0.00 3.07
2837 2864 7.687941 AAAAGACTACCAACCAATACATGAG 57.312 36.000 0.00 0.00 0.00 2.90
2838 2865 5.359194 AGACTACCAACCAATACATGAGG 57.641 43.478 0.00 0.00 0.00 3.86
2839 2866 4.164221 AGACTACCAACCAATACATGAGGG 59.836 45.833 0.00 0.00 0.00 4.30
2840 2867 2.826674 ACCAACCAATACATGAGGGG 57.173 50.000 0.00 0.00 0.00 4.79
2841 2868 1.287739 ACCAACCAATACATGAGGGGG 59.712 52.381 0.00 4.94 0.00 5.40
2842 2869 1.287739 CCAACCAATACATGAGGGGGT 59.712 52.381 0.00 0.00 0.00 4.95
2843 2870 2.292192 CCAACCAATACATGAGGGGGTT 60.292 50.000 0.00 5.27 39.08 4.11
2844 2871 3.440127 CAACCAATACATGAGGGGGTTT 58.560 45.455 0.00 0.00 36.54 3.27
2845 2872 4.570933 CCAACCAATACATGAGGGGGTTTA 60.571 45.833 0.00 0.00 36.54 2.01
2846 2873 4.957606 ACCAATACATGAGGGGGTTTAA 57.042 40.909 0.00 0.00 0.00 1.52
2847 2874 5.481615 ACCAATACATGAGGGGGTTTAAT 57.518 39.130 0.00 0.00 0.00 1.40
2848 2875 5.849140 ACCAATACATGAGGGGGTTTAATT 58.151 37.500 0.00 0.00 0.00 1.40
2849 2876 6.987557 ACCAATACATGAGGGGGTTTAATTA 58.012 36.000 0.00 0.00 0.00 1.40
2850 2877 7.601017 ACCAATACATGAGGGGGTTTAATTAT 58.399 34.615 0.00 0.00 0.00 1.28
2851 2878 8.071229 ACCAATACATGAGGGGGTTTAATTATT 58.929 33.333 0.00 0.00 0.00 1.40
2852 2879 9.594936 CCAATACATGAGGGGGTTTAATTATTA 57.405 33.333 0.00 0.00 0.00 0.98
2880 2907 4.755266 TCCATGAGGGAAACTTAGCTAC 57.245 45.455 0.00 0.00 44.80 3.58
2881 2908 3.454812 TCCATGAGGGAAACTTAGCTACC 59.545 47.826 0.00 0.00 44.80 3.18
2882 2909 3.199946 CCATGAGGGAAACTTAGCTACCA 59.800 47.826 0.00 0.00 40.01 3.25
2883 2910 4.324254 CCATGAGGGAAACTTAGCTACCAA 60.324 45.833 0.00 0.00 40.01 3.67
2884 2911 4.986054 TGAGGGAAACTTAGCTACCAAA 57.014 40.909 0.00 0.00 0.00 3.28
2885 2912 4.906618 TGAGGGAAACTTAGCTACCAAAG 58.093 43.478 0.00 0.00 0.00 2.77
2897 2924 3.059352 CTACCAAAGCTAAGCACCTGT 57.941 47.619 0.00 0.00 0.00 4.00
2898 2925 1.609208 ACCAAAGCTAAGCACCTGTG 58.391 50.000 0.00 0.00 0.00 3.66
2910 2937 2.693797 CACCTGTGCATTGTGAAGAC 57.306 50.000 7.26 0.00 31.66 3.01
2911 2938 2.224606 CACCTGTGCATTGTGAAGACT 58.775 47.619 7.26 0.00 31.66 3.24
2912 2939 3.402110 CACCTGTGCATTGTGAAGACTA 58.598 45.455 7.26 0.00 31.66 2.59
2913 2940 3.434641 CACCTGTGCATTGTGAAGACTAG 59.565 47.826 7.26 0.00 31.66 2.57
2914 2941 3.071602 ACCTGTGCATTGTGAAGACTAGT 59.928 43.478 0.00 0.00 0.00 2.57
2915 2942 4.067896 CCTGTGCATTGTGAAGACTAGTT 58.932 43.478 0.00 0.00 0.00 2.24
2916 2943 4.083643 CCTGTGCATTGTGAAGACTAGTTG 60.084 45.833 0.00 0.00 0.00 3.16
2917 2944 3.250762 TGTGCATTGTGAAGACTAGTTGC 59.749 43.478 0.00 0.42 0.00 4.17
2918 2945 3.499918 GTGCATTGTGAAGACTAGTTGCT 59.500 43.478 11.89 0.00 0.00 3.91
2919 2946 4.690748 GTGCATTGTGAAGACTAGTTGCTA 59.309 41.667 11.89 0.00 0.00 3.49
2920 2947 5.179368 GTGCATTGTGAAGACTAGTTGCTAA 59.821 40.000 11.89 0.00 0.00 3.09
2921 2948 5.409520 TGCATTGTGAAGACTAGTTGCTAAG 59.590 40.000 11.89 0.00 0.00 2.18
2922 2949 5.639506 GCATTGTGAAGACTAGTTGCTAAGA 59.360 40.000 0.00 0.00 0.00 2.10
2923 2950 6.314896 GCATTGTGAAGACTAGTTGCTAAGAT 59.685 38.462 0.00 0.00 0.00 2.40
2924 2951 7.148340 GCATTGTGAAGACTAGTTGCTAAGATT 60.148 37.037 0.00 0.00 0.00 2.40
2925 2952 8.725148 CATTGTGAAGACTAGTTGCTAAGATTT 58.275 33.333 0.00 0.00 0.00 2.17
2926 2953 8.677148 TTGTGAAGACTAGTTGCTAAGATTTT 57.323 30.769 0.00 0.00 0.00 1.82
2927 2954 9.772973 TTGTGAAGACTAGTTGCTAAGATTTTA 57.227 29.630 0.00 0.00 0.00 1.52
2928 2955 9.772973 TGTGAAGACTAGTTGCTAAGATTTTAA 57.227 29.630 0.00 0.00 0.00 1.52
2930 2957 9.998106 TGAAGACTAGTTGCTAAGATTTTAAGT 57.002 29.630 0.00 0.00 0.00 2.24
2932 2959 8.257830 AGACTAGTTGCTAAGATTTTAAGTGC 57.742 34.615 0.00 0.00 0.00 4.40
2933 2960 7.878127 AGACTAGTTGCTAAGATTTTAAGTGCA 59.122 33.333 0.00 0.00 0.00 4.57
2934 2961 7.807680 ACTAGTTGCTAAGATTTTAAGTGCAC 58.192 34.615 9.40 9.40 0.00 4.57
2935 2962 6.884280 AGTTGCTAAGATTTTAAGTGCACT 57.116 33.333 15.25 15.25 0.00 4.40
2936 2963 7.277174 AGTTGCTAAGATTTTAAGTGCACTT 57.723 32.000 32.97 32.97 39.85 3.16
2937 2964 8.391075 AGTTGCTAAGATTTTAAGTGCACTTA 57.609 30.769 30.81 30.81 37.40 2.24
2938 2965 8.846211 AGTTGCTAAGATTTTAAGTGCACTTAA 58.154 29.630 36.66 36.66 44.15 1.85
2939 2966 8.902735 GTTGCTAAGATTTTAAGTGCACTTAAC 58.097 33.333 38.94 29.96 45.11 2.01
2940 2967 8.160521 TGCTAAGATTTTAAGTGCACTTAACA 57.839 30.769 38.94 34.54 45.11 2.41
2941 2968 8.073768 TGCTAAGATTTTAAGTGCACTTAACAC 58.926 33.333 38.94 31.27 45.11 3.32
2942 2969 7.537649 GCTAAGATTTTAAGTGCACTTAACACC 59.462 37.037 38.94 29.12 45.11 4.16
2943 2970 7.582667 AAGATTTTAAGTGCACTTAACACCT 57.417 32.000 38.94 30.56 45.11 4.00
2944 2971 7.203255 AGATTTTAAGTGCACTTAACACCTC 57.797 36.000 38.94 30.72 45.11 3.85
2945 2972 6.998673 AGATTTTAAGTGCACTTAACACCTCT 59.001 34.615 38.94 31.86 45.11 3.69
2946 2973 7.502561 AGATTTTAAGTGCACTTAACACCTCTT 59.497 33.333 38.94 23.51 45.11 2.85
2947 2974 7.399245 TTTTAAGTGCACTTAACACCTCTTT 57.601 32.000 38.94 16.23 45.11 2.52
2948 2975 7.399245 TTTAAGTGCACTTAACACCTCTTTT 57.601 32.000 38.94 16.05 45.11 2.27
2949 2976 8.508883 TTTAAGTGCACTTAACACCTCTTTTA 57.491 30.769 38.94 23.66 45.11 1.52
2950 2977 8.508883 TTAAGTGCACTTAACACCTCTTTTAA 57.491 30.769 36.66 19.50 41.85 1.52
2951 2978 6.619801 AGTGCACTTAACACCTCTTTTAAG 57.380 37.500 15.25 0.00 39.98 1.85
2952 2979 5.008712 AGTGCACTTAACACCTCTTTTAAGC 59.991 40.000 15.25 0.00 38.39 3.09
2953 2980 4.277423 TGCACTTAACACCTCTTTTAAGCC 59.723 41.667 0.00 0.00 38.39 4.35
2954 2981 4.321008 GCACTTAACACCTCTTTTAAGCCC 60.321 45.833 0.00 0.00 38.39 5.19
2955 2982 4.217767 CACTTAACACCTCTTTTAAGCCCC 59.782 45.833 0.00 0.00 38.39 5.80
2956 2983 2.304221 AACACCTCTTTTAAGCCCCC 57.696 50.000 0.00 0.00 0.00 5.40
2957 2984 1.154430 ACACCTCTTTTAAGCCCCCA 58.846 50.000 0.00 0.00 0.00 4.96
2958 2985 1.716503 ACACCTCTTTTAAGCCCCCAT 59.283 47.619 0.00 0.00 0.00 4.00
2959 2986 2.102578 CACCTCTTTTAAGCCCCCATG 58.897 52.381 0.00 0.00 0.00 3.66
2960 2987 1.114627 CCTCTTTTAAGCCCCCATGC 58.885 55.000 0.00 0.00 0.00 4.06
2961 2988 1.619432 CCTCTTTTAAGCCCCCATGCA 60.619 52.381 0.00 0.00 0.00 3.96
2962 2989 2.391678 CTCTTTTAAGCCCCCATGCAT 58.608 47.619 0.00 0.00 0.00 3.96
2963 2990 2.767960 CTCTTTTAAGCCCCCATGCATT 59.232 45.455 0.00 0.00 0.00 3.56
2964 2991 2.500910 TCTTTTAAGCCCCCATGCATTG 59.499 45.455 0.00 0.00 0.00 2.82
2965 2992 1.202330 TTTAAGCCCCCATGCATTGG 58.798 50.000 9.90 9.90 46.00 3.16
2972 2999 3.851955 CCATGCATTGGGAGAGGC 58.148 61.111 0.00 0.00 42.33 4.70
2973 3000 1.831286 CCATGCATTGGGAGAGGCC 60.831 63.158 0.00 0.00 42.33 5.19
2974 3001 1.229359 CATGCATTGGGAGAGGCCT 59.771 57.895 3.86 3.86 36.66 5.19
2975 3002 0.475475 CATGCATTGGGAGAGGCCTA 59.525 55.000 4.42 0.00 36.66 3.93
2976 3003 1.133699 CATGCATTGGGAGAGGCCTAA 60.134 52.381 4.42 0.00 41.78 2.69
2977 3004 0.548031 TGCATTGGGAGAGGCCTAAG 59.452 55.000 4.42 0.00 40.79 2.18
2978 3005 0.839946 GCATTGGGAGAGGCCTAAGA 59.160 55.000 4.42 0.00 40.79 2.10
2979 3006 1.423161 GCATTGGGAGAGGCCTAAGAT 59.577 52.381 4.42 0.00 40.79 2.40
2980 3007 2.813354 GCATTGGGAGAGGCCTAAGATG 60.813 54.545 4.42 5.96 40.79 2.90
2981 3008 2.270434 TTGGGAGAGGCCTAAGATGT 57.730 50.000 4.42 0.00 31.35 3.06
2982 3009 1.794714 TGGGAGAGGCCTAAGATGTC 58.205 55.000 4.42 0.00 36.66 3.06
2983 3010 0.676736 GGGAGAGGCCTAAGATGTCG 59.323 60.000 4.42 0.00 36.66 4.35
2984 3011 1.404843 GGAGAGGCCTAAGATGTCGT 58.595 55.000 4.42 0.00 0.00 4.34
2985 3012 2.584236 GGAGAGGCCTAAGATGTCGTA 58.416 52.381 4.42 0.00 0.00 3.43
2986 3013 2.293955 GGAGAGGCCTAAGATGTCGTAC 59.706 54.545 4.42 0.00 0.00 3.67
2987 3014 3.215975 GAGAGGCCTAAGATGTCGTACT 58.784 50.000 4.42 0.00 0.00 2.73
2988 3015 3.633065 GAGAGGCCTAAGATGTCGTACTT 59.367 47.826 4.42 0.00 0.00 2.24
2989 3016 4.024670 AGAGGCCTAAGATGTCGTACTTT 58.975 43.478 4.42 0.00 0.00 2.66
2990 3017 5.198965 AGAGGCCTAAGATGTCGTACTTTA 58.801 41.667 4.42 0.00 0.00 1.85
2991 3018 5.834204 AGAGGCCTAAGATGTCGTACTTTAT 59.166 40.000 4.42 0.00 0.00 1.40
2992 3019 6.016108 AGAGGCCTAAGATGTCGTACTTTATC 60.016 42.308 4.42 0.00 0.00 1.75
2993 3020 4.916249 GGCCTAAGATGTCGTACTTTATCG 59.084 45.833 0.00 0.00 0.00 2.92
2994 3021 5.278169 GGCCTAAGATGTCGTACTTTATCGA 60.278 44.000 0.00 0.00 0.00 3.59
2995 3022 6.380190 GCCTAAGATGTCGTACTTTATCGAT 58.620 40.000 2.16 2.16 38.32 3.59
2996 3023 6.862090 GCCTAAGATGTCGTACTTTATCGATT 59.138 38.462 1.71 0.00 38.32 3.34
2997 3024 8.019669 GCCTAAGATGTCGTACTTTATCGATTA 58.980 37.037 1.71 0.00 38.32 1.75
2998 3025 9.327529 CCTAAGATGTCGTACTTTATCGATTAC 57.672 37.037 1.71 0.00 38.32 1.89
2999 3026 9.874215 CTAAGATGTCGTACTTTATCGATTACA 57.126 33.333 1.71 0.00 38.32 2.41
3001 3028 9.745880 AAGATGTCGTACTTTATCGATTACATT 57.254 29.630 1.71 0.00 38.32 2.71
3007 3034 8.918658 TCGTACTTTATCGATTACATTATTGGC 58.081 33.333 1.71 0.00 0.00 4.52
3008 3035 8.922676 CGTACTTTATCGATTACATTATTGGCT 58.077 33.333 1.71 0.00 0.00 4.75
3014 3041 9.936759 TTATCGATTACATTATTGGCTATCACA 57.063 29.630 1.71 0.00 0.00 3.58
3015 3042 7.889589 TCGATTACATTATTGGCTATCACAG 57.110 36.000 0.00 0.00 0.00 3.66
3029 3056 3.641434 ATCACAGCTTTGTATCTGCCT 57.359 42.857 0.00 0.00 33.80 4.75
3030 3057 3.423539 TCACAGCTTTGTATCTGCCTT 57.576 42.857 0.00 0.00 33.80 4.35
3031 3058 3.754965 TCACAGCTTTGTATCTGCCTTT 58.245 40.909 0.00 0.00 33.80 3.11
3032 3059 3.503363 TCACAGCTTTGTATCTGCCTTTG 59.497 43.478 0.00 0.00 33.80 2.77
3033 3060 2.821969 ACAGCTTTGTATCTGCCTTTGG 59.178 45.455 0.00 0.00 33.80 3.28
3132 3161 7.170393 ACATGAGGTAAAAGAAAATTAGGCC 57.830 36.000 0.00 0.00 0.00 5.19
3134 3163 4.703093 TGAGGTAAAAGAAAATTAGGCCGG 59.297 41.667 0.00 0.00 0.00 6.13
3151 3180 1.615651 CCGGACATCATCCCACCAAAA 60.616 52.381 0.00 0.00 46.04 2.44
3152 3181 2.166829 CGGACATCATCCCACCAAAAA 58.833 47.619 0.00 0.00 46.04 1.94
3223 3253 1.218047 CTTCCCTCGGCAATGACGA 59.782 57.895 11.91 11.91 42.47 4.20
3234 3269 2.476185 GGCAATGACGAAACTGAATCGG 60.476 50.000 10.47 0.00 44.32 4.18
3277 3313 9.748708 GTTGGAAAGCATCATATAAAATAGCAA 57.251 29.630 0.00 0.00 0.00 3.91
3321 3358 1.453155 CTCCATTGCAAGCGGTAACT 58.547 50.000 15.36 0.00 0.00 2.24
3345 3382 3.005897 GCTCTAAACAGTCTGACTCCACA 59.994 47.826 7.49 0.00 0.00 4.17
3370 3407 8.141909 CAGTGATTTTTGAGCATCCAATATCAT 58.858 33.333 0.00 0.00 33.80 2.45
3380 3417 7.233348 TGAGCATCCAATATCATGTACTAGTCA 59.767 37.037 0.00 0.00 0.00 3.41
3398 3435 5.112129 AGTCAAAGACCAAGGTAAAGTGT 57.888 39.130 0.00 0.00 32.18 3.55
3403 3440 6.262273 TCAAAGACCAAGGTAAAGTGTCATTC 59.738 38.462 0.00 0.00 0.00 2.67
3438 3475 4.082571 GCAACACTTGAGGCATAACTGAAT 60.083 41.667 0.00 0.00 0.00 2.57
3447 3484 4.564041 AGGCATAACTGAATATCTCTGCG 58.436 43.478 0.00 0.00 0.00 5.18
3478 3515 0.981183 TGCTTCCCCACGACTGTTAT 59.019 50.000 0.00 0.00 0.00 1.89
3487 3524 2.289274 CCACGACTGTTATGCACAACAA 59.711 45.455 12.33 0.00 37.93 2.83
3569 3607 2.403252 ATAAGTGGTTTCTCCCAGCG 57.597 50.000 0.00 0.00 34.43 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.047002 GGTAGCCCGCAAATTTCCTA 57.953 50.000 0.00 0.00 0.00 2.94
59 60 1.542472 TCGCTCACAACATCCGTTAGA 59.458 47.619 0.00 0.00 32.75 2.10
68 69 2.455674 ATACAAGCTCGCTCACAACA 57.544 45.000 0.00 0.00 0.00 3.33
71 72 5.163764 CCATAAAAATACAAGCTCGCTCACA 60.164 40.000 0.00 0.00 0.00 3.58
232 244 8.463607 GCTAGATCTAGGCTCTACGATTTTTAT 58.536 37.037 27.21 0.00 33.87 1.40
233 245 7.666388 AGCTAGATCTAGGCTCTACGATTTTTA 59.334 37.037 27.21 0.00 33.87 1.52
234 246 6.492087 AGCTAGATCTAGGCTCTACGATTTTT 59.508 38.462 27.21 1.56 33.87 1.94
235 247 6.007703 AGCTAGATCTAGGCTCTACGATTTT 58.992 40.000 27.21 1.98 33.87 1.82
236 248 5.566469 AGCTAGATCTAGGCTCTACGATTT 58.434 41.667 27.21 2.57 33.87 2.17
237 249 5.045869 AGAGCTAGATCTAGGCTCTACGATT 60.046 44.000 32.80 19.96 40.93 3.34
238 250 4.469945 AGAGCTAGATCTAGGCTCTACGAT 59.530 45.833 32.80 20.40 40.93 3.73
239 251 3.835978 AGAGCTAGATCTAGGCTCTACGA 59.164 47.826 32.80 5.05 40.93 3.43
273 285 0.108585 ACCAAACTCGATGTGCAGGT 59.891 50.000 0.00 0.00 0.00 4.00
295 307 3.084786 AGCTCACCTATTTTGCTTCACC 58.915 45.455 0.00 0.00 0.00 4.02
369 381 6.347696 AGCATGTTTTGGATTTGTTCTTTGA 58.652 32.000 0.00 0.00 0.00 2.69
589 605 6.153756 GTCACGGGCTTTTAAATGTTTGTAT 58.846 36.000 3.34 0.00 0.00 2.29
612 628 6.282199 ACTAATAGAATGTCCGTGTCTTGT 57.718 37.500 0.00 0.00 0.00 3.16
616 632 9.909644 ATACATTACTAATAGAATGTCCGTGTC 57.090 33.333 15.90 0.00 43.50 3.67
641 657 9.652114 ATTTCTCAGGGCTCTTTCATTTATTAT 57.348 29.630 0.00 0.00 0.00 1.28
642 658 9.479549 AATTTCTCAGGGCTCTTTCATTTATTA 57.520 29.630 0.00 0.00 0.00 0.98
643 659 7.968014 ATTTCTCAGGGCTCTTTCATTTATT 57.032 32.000 0.00 0.00 0.00 1.40
645 661 6.721208 ACAATTTCTCAGGGCTCTTTCATTTA 59.279 34.615 0.00 0.00 0.00 1.40
646 662 5.541484 ACAATTTCTCAGGGCTCTTTCATTT 59.459 36.000 0.00 0.00 0.00 2.32
647 663 5.082425 ACAATTTCTCAGGGCTCTTTCATT 58.918 37.500 0.00 0.00 0.00 2.57
648 664 4.670765 ACAATTTCTCAGGGCTCTTTCAT 58.329 39.130 0.00 0.00 0.00 2.57
649 665 4.104383 ACAATTTCTCAGGGCTCTTTCA 57.896 40.909 0.00 0.00 0.00 2.69
650 666 4.520492 TCAACAATTTCTCAGGGCTCTTTC 59.480 41.667 0.00 0.00 0.00 2.62
651 667 4.279420 GTCAACAATTTCTCAGGGCTCTTT 59.721 41.667 0.00 0.00 0.00 2.52
652 668 3.823304 GTCAACAATTTCTCAGGGCTCTT 59.177 43.478 0.00 0.00 0.00 2.85
653 669 3.416156 GTCAACAATTTCTCAGGGCTCT 58.584 45.455 0.00 0.00 0.00 4.09
654 670 2.489722 GGTCAACAATTTCTCAGGGCTC 59.510 50.000 0.00 0.00 0.00 4.70
655 671 2.519013 GGTCAACAATTTCTCAGGGCT 58.481 47.619 0.00 0.00 0.00 5.19
656 672 1.546029 GGGTCAACAATTTCTCAGGGC 59.454 52.381 0.00 0.00 0.00 5.19
657 673 1.812571 CGGGTCAACAATTTCTCAGGG 59.187 52.381 0.00 0.00 0.00 4.45
658 674 1.812571 CCGGGTCAACAATTTCTCAGG 59.187 52.381 0.00 0.00 0.00 3.86
659 675 2.484264 GACCGGGTCAACAATTTCTCAG 59.516 50.000 22.10 0.00 32.09 3.35
660 676 2.158740 TGACCGGGTCAACAATTTCTCA 60.159 45.455 26.95 0.00 39.78 3.27
661 677 2.500229 TGACCGGGTCAACAATTTCTC 58.500 47.619 26.95 0.00 39.78 2.87
662 678 2.649531 TGACCGGGTCAACAATTTCT 57.350 45.000 26.95 0.00 39.78 2.52
671 687 3.254657 GTCATTCAATTTTGACCGGGTCA 59.745 43.478 25.53 25.53 41.09 4.02
672 688 3.506067 AGTCATTCAATTTTGACCGGGTC 59.494 43.478 20.36 20.36 42.56 4.46
673 689 3.496331 AGTCATTCAATTTTGACCGGGT 58.504 40.909 6.32 0.00 42.56 5.28
674 690 3.758554 AGAGTCATTCAATTTTGACCGGG 59.241 43.478 6.32 0.00 42.56 5.73
675 691 5.048782 TGAAGAGTCATTCAATTTTGACCGG 60.049 40.000 0.00 0.00 42.56 5.28
676 692 6.000891 TGAAGAGTCATTCAATTTTGACCG 57.999 37.500 8.57 0.00 42.56 4.79
686 702 7.285172 TGAGGTTTTCAATTGAAGAGTCATTCA 59.715 33.333 19.64 14.63 35.21 2.57
687 703 7.651808 TGAGGTTTTCAATTGAAGAGTCATTC 58.348 34.615 19.64 12.70 35.21 2.67
688 704 7.587037 TGAGGTTTTCAATTGAAGAGTCATT 57.413 32.000 19.64 4.98 35.21 2.57
689 705 7.587037 TTGAGGTTTTCAATTGAAGAGTCAT 57.413 32.000 19.64 10.00 40.82 3.06
702 718 6.669125 ATCCACATTGAATTGAGGTTTTCA 57.331 33.333 0.00 0.00 0.00 2.69
703 719 7.381323 AGAATCCACATTGAATTGAGGTTTTC 58.619 34.615 0.00 0.00 0.00 2.29
704 720 7.307131 AGAATCCACATTGAATTGAGGTTTT 57.693 32.000 0.00 0.00 0.00 2.43
705 721 6.923199 AGAATCCACATTGAATTGAGGTTT 57.077 33.333 0.00 0.00 0.00 3.27
706 722 6.923199 AAGAATCCACATTGAATTGAGGTT 57.077 33.333 0.00 0.00 0.00 3.50
707 723 6.923199 AAAGAATCCACATTGAATTGAGGT 57.077 33.333 0.00 0.00 0.00 3.85
708 724 9.709495 TTTTAAAGAATCCACATTGAATTGAGG 57.291 29.630 0.00 0.00 0.00 3.86
715 731 9.540538 TCCCTAATTTTAAAGAATCCACATTGA 57.459 29.630 0.00 0.00 0.00 2.57
716 732 9.807649 CTCCCTAATTTTAAAGAATCCACATTG 57.192 33.333 0.00 0.00 0.00 2.82
717 733 8.478066 GCTCCCTAATTTTAAAGAATCCACATT 58.522 33.333 0.00 0.00 0.00 2.71
718 734 7.619302 TGCTCCCTAATTTTAAAGAATCCACAT 59.381 33.333 0.00 0.00 0.00 3.21
719 735 6.951198 TGCTCCCTAATTTTAAAGAATCCACA 59.049 34.615 0.00 0.00 0.00 4.17
720 736 7.404671 TGCTCCCTAATTTTAAAGAATCCAC 57.595 36.000 0.00 0.00 0.00 4.02
721 737 9.354673 CTATGCTCCCTAATTTTAAAGAATCCA 57.645 33.333 0.00 0.00 0.00 3.41
722 738 9.355916 ACTATGCTCCCTAATTTTAAAGAATCC 57.644 33.333 0.00 0.00 0.00 3.01
724 740 9.700831 ACACTATGCTCCCTAATTTTAAAGAAT 57.299 29.630 0.00 0.00 0.00 2.40
725 741 9.528489 AACACTATGCTCCCTAATTTTAAAGAA 57.472 29.630 0.00 0.00 0.00 2.52
731 747 9.780186 GACTATAACACTATGCTCCCTAATTTT 57.220 33.333 0.00 0.00 0.00 1.82
732 748 9.160412 AGACTATAACACTATGCTCCCTAATTT 57.840 33.333 0.00 0.00 0.00 1.82
733 749 8.728596 AGACTATAACACTATGCTCCCTAATT 57.271 34.615 0.00 0.00 0.00 1.40
734 750 8.728596 AAGACTATAACACTATGCTCCCTAAT 57.271 34.615 0.00 0.00 0.00 1.73
735 751 9.824216 ATAAGACTATAACACTATGCTCCCTAA 57.176 33.333 0.00 0.00 0.00 2.69
737 753 9.469097 CTATAAGACTATAACACTATGCTCCCT 57.531 37.037 0.00 0.00 0.00 4.20
738 754 9.463902 TCTATAAGACTATAACACTATGCTCCC 57.536 37.037 0.00 0.00 0.00 4.30
742 758 9.938670 CCGATCTATAAGACTATAACACTATGC 57.061 37.037 0.00 0.00 0.00 3.14
775 791 9.475620 ACGGTGACATTTGGAGATATCTATATA 57.524 33.333 4.89 0.00 0.00 0.86
776 792 8.253810 CACGGTGACATTTGGAGATATCTATAT 58.746 37.037 4.89 0.00 0.00 0.86
777 793 7.232737 ACACGGTGACATTTGGAGATATCTATA 59.767 37.037 16.29 0.00 0.00 1.31
778 794 6.042093 ACACGGTGACATTTGGAGATATCTAT 59.958 38.462 16.29 0.00 0.00 1.98
779 795 5.362717 ACACGGTGACATTTGGAGATATCTA 59.637 40.000 16.29 0.00 0.00 1.98
780 796 4.162320 ACACGGTGACATTTGGAGATATCT 59.838 41.667 16.29 4.47 0.00 1.98
781 797 4.442706 ACACGGTGACATTTGGAGATATC 58.557 43.478 16.29 0.00 0.00 1.63
782 798 4.487714 ACACGGTGACATTTGGAGATAT 57.512 40.909 16.29 0.00 0.00 1.63
783 799 3.973206 ACACGGTGACATTTGGAGATA 57.027 42.857 16.29 0.00 0.00 1.98
784 800 2.859165 ACACGGTGACATTTGGAGAT 57.141 45.000 16.29 0.00 0.00 2.75
824 840 1.766496 CCCAGGGATATACGGTGTTGT 59.234 52.381 0.00 0.00 0.00 3.32
841 857 1.613520 CGTCCCTCGCTATCTATCCCA 60.614 57.143 0.00 0.00 0.00 4.37
863 879 2.603473 AGGCAGGTCAGCGTGGTA 60.603 61.111 0.00 0.00 34.64 3.25
864 880 4.320456 CAGGCAGGTCAGCGTGGT 62.320 66.667 0.00 0.00 44.28 4.16
887 903 1.912110 GACGATGTGTGTAAGCGAGAC 59.088 52.381 0.00 0.00 0.00 3.36
935 951 1.133025 GGAATTCACAACATCGCCCAG 59.867 52.381 7.93 0.00 0.00 4.45
936 952 1.173043 GGAATTCACAACATCGCCCA 58.827 50.000 7.93 0.00 0.00 5.36
937 953 1.173043 TGGAATTCACAACATCGCCC 58.827 50.000 7.93 0.00 0.00 6.13
938 954 3.070429 GATGGAATTCACAACATCGCC 57.930 47.619 7.93 0.00 31.57 5.54
941 957 2.223572 GGCCGATGGAATTCACAACATC 60.224 50.000 7.93 9.61 37.08 3.06
942 958 1.750778 GGCCGATGGAATTCACAACAT 59.249 47.619 7.93 1.11 0.00 2.71
945 961 2.023673 GATGGCCGATGGAATTCACAA 58.976 47.619 7.93 0.00 0.00 3.33
959 975 3.265791 CTTAAGCTATGGATCGATGGCC 58.734 50.000 19.90 0.00 30.36 5.36
993 1009 3.762247 ACCATGGCCATTGTGCGC 61.762 61.111 21.08 0.00 0.00 6.09
1038 1054 3.037549 AGGTAGAAGGAGAGCCAAGATG 58.962 50.000 0.00 0.00 36.29 2.90
1039 1055 3.413105 AGGTAGAAGGAGAGCCAAGAT 57.587 47.619 0.00 0.00 36.29 2.40
1134 1153 2.915659 TGGAGGTTGCCGACGACT 60.916 61.111 0.00 0.00 0.00 4.18
1161 1180 4.853142 AGGAGCGGCCCGTGGATA 62.853 66.667 4.45 0.00 37.37 2.59
1281 1300 1.452801 GGTTTTGGTGACCTCCCGA 59.547 57.895 2.11 0.00 34.27 5.14
1296 1315 1.371558 GAAGCTGAGGTCGTGGGTT 59.628 57.895 0.00 0.00 0.00 4.11
1741 1760 3.093278 CTCGAACATCTTGCGGGC 58.907 61.111 0.00 0.00 0.00 6.13
1797 1816 0.944311 CTTCCACGTCTTCCACCACG 60.944 60.000 0.00 0.00 41.90 4.94
1918 1943 6.732531 ATTATGCATTCGGACATACATCAG 57.267 37.500 3.54 0.00 0.00 2.90
1919 1944 7.228308 TCAAATTATGCATTCGGACATACATCA 59.772 33.333 3.54 0.00 0.00 3.07
1920 1945 7.584108 TCAAATTATGCATTCGGACATACATC 58.416 34.615 3.54 0.00 0.00 3.06
1946 1971 5.596361 AGTTCTATGAGATCAGAATGTCGGT 59.404 40.000 0.00 0.00 37.40 4.69
1996 2023 0.400213 TCACTCCCGGCACTGAAAAT 59.600 50.000 0.00 0.00 0.00 1.82
2200 2227 2.677524 TGGCAGGAGCAATGGCAC 60.678 61.111 7.79 0.00 46.94 5.01
2206 2233 2.759114 CTCCCTTGGCAGGAGCAA 59.241 61.111 9.59 0.00 44.30 3.91
2295 2322 0.110486 ACTTGTTGTCCCTGCCGATT 59.890 50.000 0.00 0.00 0.00 3.34
2309 2336 2.654877 CGTCGGCCCAGTACTTGT 59.345 61.111 0.00 0.00 0.00 3.16
2343 2370 0.968393 GGCCACTCTCGAACCTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
2347 2374 1.201429 ATTGGGCCACTCTCGAACCT 61.201 55.000 5.23 0.00 0.00 3.50
2349 2376 1.084370 CGATTGGGCCACTCTCGAAC 61.084 60.000 21.48 0.00 0.00 3.95
2358 2385 1.473258 CCTTGAAATCGATTGGGCCA 58.527 50.000 12.25 0.00 0.00 5.36
2362 2389 1.818060 TGTGCCCTTGAAATCGATTGG 59.182 47.619 12.25 9.20 0.00 3.16
2367 2394 1.813513 AGTCTGTGCCCTTGAAATCG 58.186 50.000 0.00 0.00 0.00 3.34
2382 2409 3.190953 CGAAGGGTAAGAACTCGAAGTCT 59.809 47.826 0.00 0.00 0.00 3.24
2503 2530 3.046390 GCTCGATTCGTGATACTCCAAG 58.954 50.000 11.97 0.00 0.00 3.61
2511 2538 2.654749 TGTTCAGCTCGATTCGTGAT 57.345 45.000 11.97 2.59 0.00 3.06
2519 2546 0.108472 CTCTGCCATGTTCAGCTCGA 60.108 55.000 7.20 0.00 0.00 4.04
2527 2554 0.252479 CTCAGCTCCTCTGCCATGTT 59.748 55.000 0.00 0.00 42.56 2.71
2542 2569 2.022195 CCTTTGGATGGTGATGCTCAG 58.978 52.381 0.00 0.00 0.00 3.35
2571 2598 4.335647 ACTGGGCGCAGGTGAAGG 62.336 66.667 31.41 8.92 0.00 3.46
2612 2639 3.141488 CCGCGACAGCCTAGAGGT 61.141 66.667 8.23 0.00 41.18 3.85
2631 2658 1.228124 CTTGGGACGAGGCCACAAA 60.228 57.895 5.01 0.00 0.00 2.83
2637 2664 1.228154 ACAAACCTTGGGACGAGGC 60.228 57.895 2.41 0.00 37.84 4.70
2646 2673 1.108727 TGGAGGCAGCACAAACCTTG 61.109 55.000 0.00 0.00 32.67 3.61
2663 2690 0.040204 ACTGGAAAAGGGCCTGATGG 59.960 55.000 6.92 0.00 0.00 3.51
2671 2698 1.202927 TCTTGGAGCACTGGAAAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
2672 2699 2.276732 TCTTGGAGCACTGGAAAAGG 57.723 50.000 0.00 0.00 0.00 3.11
2673 2700 3.152341 ACATCTTGGAGCACTGGAAAAG 58.848 45.455 0.00 0.00 0.00 2.27
2674 2701 3.228188 ACATCTTGGAGCACTGGAAAA 57.772 42.857 0.00 0.00 0.00 2.29
2675 2702 2.957402 ACATCTTGGAGCACTGGAAA 57.043 45.000 0.00 0.00 0.00 3.13
2676 2703 2.637382 TGTACATCTTGGAGCACTGGAA 59.363 45.455 0.00 0.00 0.00 3.53
2677 2704 2.234661 CTGTACATCTTGGAGCACTGGA 59.765 50.000 0.00 0.00 0.00 3.86
2678 2705 2.625737 CTGTACATCTTGGAGCACTGG 58.374 52.381 0.00 0.00 0.00 4.00
2679 2706 2.027745 ACCTGTACATCTTGGAGCACTG 60.028 50.000 5.91 0.00 0.00 3.66
2680 2707 2.027745 CACCTGTACATCTTGGAGCACT 60.028 50.000 5.91 0.00 0.00 4.40
2681 2708 2.350522 CACCTGTACATCTTGGAGCAC 58.649 52.381 5.91 0.00 0.00 4.40
2682 2709 1.339055 GCACCTGTACATCTTGGAGCA 60.339 52.381 13.88 0.00 36.45 4.26
2683 2710 1.065854 AGCACCTGTACATCTTGGAGC 60.066 52.381 11.69 11.69 36.63 4.70
2684 2711 4.437239 CTTAGCACCTGTACATCTTGGAG 58.563 47.826 5.91 0.00 0.00 3.86
2685 2712 3.197766 CCTTAGCACCTGTACATCTTGGA 59.802 47.826 5.91 0.00 0.00 3.53
2686 2713 3.197766 TCCTTAGCACCTGTACATCTTGG 59.802 47.826 0.00 0.00 0.00 3.61
2687 2714 4.184629 GTCCTTAGCACCTGTACATCTTG 58.815 47.826 0.00 0.00 0.00 3.02
2688 2715 3.119101 CGTCCTTAGCACCTGTACATCTT 60.119 47.826 0.00 0.00 0.00 2.40
2689 2716 2.427453 CGTCCTTAGCACCTGTACATCT 59.573 50.000 0.00 0.00 0.00 2.90
2690 2717 2.810650 CGTCCTTAGCACCTGTACATC 58.189 52.381 0.00 0.00 0.00 3.06
2691 2718 1.134788 GCGTCCTTAGCACCTGTACAT 60.135 52.381 0.00 0.00 34.19 2.29
2692 2719 0.245539 GCGTCCTTAGCACCTGTACA 59.754 55.000 0.00 0.00 34.19 2.90
2693 2720 0.459759 GGCGTCCTTAGCACCTGTAC 60.460 60.000 0.00 0.00 36.08 2.90
2694 2721 0.901114 TGGCGTCCTTAGCACCTGTA 60.901 55.000 0.00 0.00 36.08 2.74
2695 2722 2.214216 TGGCGTCCTTAGCACCTGT 61.214 57.895 0.00 0.00 36.08 4.00
2696 2723 1.741770 GTGGCGTCCTTAGCACCTG 60.742 63.158 0.00 0.00 36.08 4.00
2697 2724 1.553690 ATGTGGCGTCCTTAGCACCT 61.554 55.000 0.00 0.00 36.08 4.00
2698 2725 0.177141 TATGTGGCGTCCTTAGCACC 59.823 55.000 0.00 0.00 36.08 5.01
2699 2726 1.136305 TCTATGTGGCGTCCTTAGCAC 59.864 52.381 0.00 0.00 36.08 4.40
2700 2727 1.480789 TCTATGTGGCGTCCTTAGCA 58.519 50.000 0.00 0.00 36.08 3.49
2701 2728 2.821991 ATCTATGTGGCGTCCTTAGC 57.178 50.000 0.00 0.00 0.00 3.09
2723 2750 7.507733 TTAATTGCTTTGCCACATCATTTTT 57.492 28.000 0.00 0.00 0.00 1.94
2724 2751 7.444792 TCTTTAATTGCTTTGCCACATCATTTT 59.555 29.630 0.00 0.00 0.00 1.82
2725 2752 6.935771 TCTTTAATTGCTTTGCCACATCATTT 59.064 30.769 0.00 0.00 0.00 2.32
2726 2753 6.465948 TCTTTAATTGCTTTGCCACATCATT 58.534 32.000 0.00 0.00 0.00 2.57
2727 2754 6.040209 TCTTTAATTGCTTTGCCACATCAT 57.960 33.333 0.00 0.00 0.00 2.45
2728 2755 5.465532 TCTTTAATTGCTTTGCCACATCA 57.534 34.783 0.00 0.00 0.00 3.07
2729 2756 4.866486 CCTCTTTAATTGCTTTGCCACATC 59.134 41.667 0.00 0.00 0.00 3.06
2730 2757 4.527816 TCCTCTTTAATTGCTTTGCCACAT 59.472 37.500 0.00 0.00 0.00 3.21
2731 2758 3.894427 TCCTCTTTAATTGCTTTGCCACA 59.106 39.130 0.00 0.00 0.00 4.17
2732 2759 4.218417 TCTCCTCTTTAATTGCTTTGCCAC 59.782 41.667 0.00 0.00 0.00 5.01
2733 2760 4.406456 TCTCCTCTTTAATTGCTTTGCCA 58.594 39.130 0.00 0.00 0.00 4.92
2734 2761 4.702131 TCTCTCCTCTTTAATTGCTTTGCC 59.298 41.667 0.00 0.00 0.00 4.52
2735 2762 5.645497 TCTCTCTCCTCTTTAATTGCTTTGC 59.355 40.000 0.00 0.00 0.00 3.68
2736 2763 7.102346 TCTCTCTCTCCTCTTTAATTGCTTTG 58.898 38.462 0.00 0.00 0.00 2.77
2737 2764 7.251321 TCTCTCTCTCCTCTTTAATTGCTTT 57.749 36.000 0.00 0.00 0.00 3.51
2738 2765 6.630188 GCTCTCTCTCTCCTCTTTAATTGCTT 60.630 42.308 0.00 0.00 0.00 3.91
2739 2766 5.163416 GCTCTCTCTCTCCTCTTTAATTGCT 60.163 44.000 0.00 0.00 0.00 3.91
2740 2767 5.049828 GCTCTCTCTCTCCTCTTTAATTGC 58.950 45.833 0.00 0.00 0.00 3.56
2741 2768 6.219417 TGCTCTCTCTCTCCTCTTTAATTG 57.781 41.667 0.00 0.00 0.00 2.32
2742 2769 7.436320 AATGCTCTCTCTCTCCTCTTTAATT 57.564 36.000 0.00 0.00 0.00 1.40
2743 2770 8.587608 CATAATGCTCTCTCTCTCCTCTTTAAT 58.412 37.037 0.00 0.00 0.00 1.40
2744 2771 7.782168 TCATAATGCTCTCTCTCTCCTCTTTAA 59.218 37.037 0.00 0.00 0.00 1.52
2745 2772 7.293828 TCATAATGCTCTCTCTCTCCTCTTTA 58.706 38.462 0.00 0.00 0.00 1.85
2746 2773 6.135454 TCATAATGCTCTCTCTCTCCTCTTT 58.865 40.000 0.00 0.00 0.00 2.52
2747 2774 5.704354 TCATAATGCTCTCTCTCTCCTCTT 58.296 41.667 0.00 0.00 0.00 2.85
2748 2775 5.323382 TCATAATGCTCTCTCTCTCCTCT 57.677 43.478 0.00 0.00 0.00 3.69
2749 2776 5.105635 CCATCATAATGCTCTCTCTCTCCTC 60.106 48.000 0.00 0.00 0.00 3.71
2750 2777 4.773674 CCATCATAATGCTCTCTCTCTCCT 59.226 45.833 0.00 0.00 0.00 3.69
2751 2778 4.621274 GCCATCATAATGCTCTCTCTCTCC 60.621 50.000 0.00 0.00 0.00 3.71
2752 2779 4.497300 GCCATCATAATGCTCTCTCTCTC 58.503 47.826 0.00 0.00 0.00 3.20
2753 2780 3.261390 GGCCATCATAATGCTCTCTCTCT 59.739 47.826 0.00 0.00 0.00 3.10
2754 2781 3.598299 GGCCATCATAATGCTCTCTCTC 58.402 50.000 0.00 0.00 0.00 3.20
2755 2782 2.305343 GGGCCATCATAATGCTCTCTCT 59.695 50.000 4.39 0.00 0.00 3.10
2756 2783 2.305343 AGGGCCATCATAATGCTCTCTC 59.695 50.000 6.18 0.00 0.00 3.20
2757 2784 2.346529 AGGGCCATCATAATGCTCTCT 58.653 47.619 6.18 0.00 0.00 3.10
2758 2785 2.875094 AGGGCCATCATAATGCTCTC 57.125 50.000 6.18 0.00 0.00 3.20
2759 2786 3.524826 TCTAGGGCCATCATAATGCTCT 58.475 45.455 6.18 0.00 0.00 4.09
2760 2787 3.988976 TCTAGGGCCATCATAATGCTC 57.011 47.619 6.18 0.00 0.00 4.26
2761 2788 4.729552 TTTCTAGGGCCATCATAATGCT 57.270 40.909 6.18 0.00 0.00 3.79
2762 2789 5.789643 TTTTTCTAGGGCCATCATAATGC 57.210 39.130 6.18 0.00 0.00 3.56
2790 2817 2.028476 ACATAGGTTCGTGTGCTTAGCA 60.028 45.455 1.39 1.39 35.60 3.49
2791 2818 2.618053 ACATAGGTTCGTGTGCTTAGC 58.382 47.619 0.00 0.00 0.00 3.09
2792 2819 6.715344 TTTTACATAGGTTCGTGTGCTTAG 57.285 37.500 0.00 0.00 0.00 2.18
2793 2820 6.930164 TCTTTTTACATAGGTTCGTGTGCTTA 59.070 34.615 0.00 0.00 0.00 3.09
2794 2821 5.761234 TCTTTTTACATAGGTTCGTGTGCTT 59.239 36.000 0.00 0.00 0.00 3.91
2795 2822 5.178809 GTCTTTTTACATAGGTTCGTGTGCT 59.821 40.000 0.00 0.00 0.00 4.40
2796 2823 5.178809 AGTCTTTTTACATAGGTTCGTGTGC 59.821 40.000 0.00 0.00 0.00 4.57
2797 2824 6.780706 AGTCTTTTTACATAGGTTCGTGTG 57.219 37.500 0.00 0.00 0.00 3.82
2798 2825 6.870439 GGTAGTCTTTTTACATAGGTTCGTGT 59.130 38.462 0.00 0.00 0.00 4.49
2799 2826 6.869913 TGGTAGTCTTTTTACATAGGTTCGTG 59.130 38.462 0.00 0.00 0.00 4.35
2800 2827 6.996509 TGGTAGTCTTTTTACATAGGTTCGT 58.003 36.000 0.00 0.00 0.00 3.85
2801 2828 7.148523 GGTTGGTAGTCTTTTTACATAGGTTCG 60.149 40.741 0.00 0.00 0.00 3.95
2802 2829 7.662669 TGGTTGGTAGTCTTTTTACATAGGTTC 59.337 37.037 0.00 0.00 0.00 3.62
2803 2830 7.519927 TGGTTGGTAGTCTTTTTACATAGGTT 58.480 34.615 0.00 0.00 0.00 3.50
2804 2831 7.081857 TGGTTGGTAGTCTTTTTACATAGGT 57.918 36.000 0.00 0.00 0.00 3.08
2805 2832 7.989416 TTGGTTGGTAGTCTTTTTACATAGG 57.011 36.000 0.00 0.00 0.00 2.57
2808 2835 8.927675 TGTATTGGTTGGTAGTCTTTTTACAT 57.072 30.769 0.00 0.00 0.00 2.29
2809 2836 8.788806 CATGTATTGGTTGGTAGTCTTTTTACA 58.211 33.333 0.00 0.00 0.00 2.41
2810 2837 9.005777 TCATGTATTGGTTGGTAGTCTTTTTAC 57.994 33.333 0.00 0.00 0.00 2.01
2811 2838 9.226606 CTCATGTATTGGTTGGTAGTCTTTTTA 57.773 33.333 0.00 0.00 0.00 1.52
2812 2839 7.176690 CCTCATGTATTGGTTGGTAGTCTTTTT 59.823 37.037 0.00 0.00 0.00 1.94
2813 2840 6.659242 CCTCATGTATTGGTTGGTAGTCTTTT 59.341 38.462 0.00 0.00 0.00 2.27
2814 2841 6.180472 CCTCATGTATTGGTTGGTAGTCTTT 58.820 40.000 0.00 0.00 0.00 2.52
2815 2842 5.339200 CCCTCATGTATTGGTTGGTAGTCTT 60.339 44.000 0.00 0.00 0.00 3.01
2816 2843 4.164221 CCCTCATGTATTGGTTGGTAGTCT 59.836 45.833 0.00 0.00 0.00 3.24
2817 2844 4.451900 CCCTCATGTATTGGTTGGTAGTC 58.548 47.826 0.00 0.00 0.00 2.59
2818 2845 3.202151 CCCCTCATGTATTGGTTGGTAGT 59.798 47.826 0.00 0.00 0.00 2.73
2819 2846 3.435026 CCCCCTCATGTATTGGTTGGTAG 60.435 52.174 0.00 0.00 0.00 3.18
2820 2847 2.512056 CCCCCTCATGTATTGGTTGGTA 59.488 50.000 0.00 0.00 0.00 3.25
2821 2848 1.287739 CCCCCTCATGTATTGGTTGGT 59.712 52.381 0.00 0.00 0.00 3.67
2822 2849 1.287739 ACCCCCTCATGTATTGGTTGG 59.712 52.381 0.00 0.00 0.00 3.77
2823 2850 2.826674 ACCCCCTCATGTATTGGTTG 57.173 50.000 0.00 0.00 0.00 3.77
2824 2851 3.845109 AAACCCCCTCATGTATTGGTT 57.155 42.857 6.64 6.64 37.68 3.67
2825 2852 4.957606 TTAAACCCCCTCATGTATTGGT 57.042 40.909 0.00 0.00 0.00 3.67
2826 2853 8.491045 AATAATTAAACCCCCTCATGTATTGG 57.509 34.615 0.00 0.00 0.00 3.16
2859 2886 3.454812 GGTAGCTAAGTTTCCCTCATGGA 59.545 47.826 0.00 0.00 43.18 3.41
2860 2887 3.199946 TGGTAGCTAAGTTTCCCTCATGG 59.800 47.826 0.00 0.00 0.00 3.66
2861 2888 4.487714 TGGTAGCTAAGTTTCCCTCATG 57.512 45.455 0.00 0.00 0.00 3.07
2862 2889 5.501156 CTTTGGTAGCTAAGTTTCCCTCAT 58.499 41.667 7.80 0.00 0.00 2.90
2863 2890 4.806286 GCTTTGGTAGCTAAGTTTCCCTCA 60.806 45.833 15.71 0.00 46.77 3.86
2864 2891 3.690139 GCTTTGGTAGCTAAGTTTCCCTC 59.310 47.826 15.71 0.00 46.77 4.30
2865 2892 3.687125 GCTTTGGTAGCTAAGTTTCCCT 58.313 45.455 15.71 0.00 46.77 4.20
2877 2904 2.744202 CACAGGTGCTTAGCTTTGGTAG 59.256 50.000 5.60 0.00 0.00 3.18
2878 2905 2.778299 CACAGGTGCTTAGCTTTGGTA 58.222 47.619 5.60 0.00 0.00 3.25
2879 2906 1.609208 CACAGGTGCTTAGCTTTGGT 58.391 50.000 5.60 0.00 0.00 3.67
2891 2918 2.224606 AGTCTTCACAATGCACAGGTG 58.775 47.619 7.67 7.67 0.00 4.00
2892 2919 2.645838 AGTCTTCACAATGCACAGGT 57.354 45.000 0.00 0.00 0.00 4.00
2893 2920 3.668447 ACTAGTCTTCACAATGCACAGG 58.332 45.455 0.00 0.00 0.00 4.00
2894 2921 4.612259 GCAACTAGTCTTCACAATGCACAG 60.612 45.833 0.00 0.00 33.00 3.66
2895 2922 3.250762 GCAACTAGTCTTCACAATGCACA 59.749 43.478 0.00 0.00 33.00 4.57
2896 2923 3.499918 AGCAACTAGTCTTCACAATGCAC 59.500 43.478 12.92 0.00 35.11 4.57
2897 2924 3.743521 AGCAACTAGTCTTCACAATGCA 58.256 40.909 12.92 0.00 35.11 3.96
2898 2925 5.639506 TCTTAGCAACTAGTCTTCACAATGC 59.360 40.000 0.00 0.00 0.00 3.56
2899 2926 7.840342 ATCTTAGCAACTAGTCTTCACAATG 57.160 36.000 0.00 0.00 0.00 2.82
2900 2927 8.854614 AAATCTTAGCAACTAGTCTTCACAAT 57.145 30.769 0.00 0.00 0.00 2.71
2901 2928 8.677148 AAAATCTTAGCAACTAGTCTTCACAA 57.323 30.769 0.00 0.00 0.00 3.33
2902 2929 9.772973 TTAAAATCTTAGCAACTAGTCTTCACA 57.227 29.630 0.00 0.00 0.00 3.58
2904 2931 9.998106 ACTTAAAATCTTAGCAACTAGTCTTCA 57.002 29.630 0.00 0.00 0.00 3.02
2906 2933 8.722394 GCACTTAAAATCTTAGCAACTAGTCTT 58.278 33.333 0.00 0.00 0.00 3.01
2907 2934 7.878127 TGCACTTAAAATCTTAGCAACTAGTCT 59.122 33.333 0.00 0.00 0.00 3.24
2908 2935 7.958025 GTGCACTTAAAATCTTAGCAACTAGTC 59.042 37.037 10.32 0.00 31.78 2.59
2909 2936 7.661847 AGTGCACTTAAAATCTTAGCAACTAGT 59.338 33.333 15.25 0.00 31.78 2.57
2910 2937 8.034058 AGTGCACTTAAAATCTTAGCAACTAG 57.966 34.615 15.25 0.00 31.78 2.57
2911 2938 7.979444 AGTGCACTTAAAATCTTAGCAACTA 57.021 32.000 15.25 0.00 31.78 2.24
2912 2939 6.884280 AGTGCACTTAAAATCTTAGCAACT 57.116 33.333 15.25 0.00 31.78 3.16
2913 2940 8.902735 GTTAAGTGCACTTAAAATCTTAGCAAC 58.097 33.333 39.88 26.88 46.35 4.17
2914 2941 8.625651 TGTTAAGTGCACTTAAAATCTTAGCAA 58.374 29.630 39.88 21.66 46.35 3.91
2915 2942 8.073768 GTGTTAAGTGCACTTAAAATCTTAGCA 58.926 33.333 39.88 30.07 46.35 3.49
2916 2943 7.537649 GGTGTTAAGTGCACTTAAAATCTTAGC 59.462 37.037 39.88 28.41 46.35 3.09
2917 2944 8.784043 AGGTGTTAAGTGCACTTAAAATCTTAG 58.216 33.333 39.88 0.00 41.85 2.18
2918 2945 8.685838 AGGTGTTAAGTGCACTTAAAATCTTA 57.314 30.769 39.88 22.55 41.85 2.10
2919 2946 7.502561 AGAGGTGTTAAGTGCACTTAAAATCTT 59.497 33.333 38.10 28.69 43.58 2.40
2920 2947 6.998673 AGAGGTGTTAAGTGCACTTAAAATCT 59.001 34.615 38.39 38.39 45.24 2.40
2921 2948 7.203255 AGAGGTGTTAAGTGCACTTAAAATC 57.797 36.000 39.88 36.13 46.35 2.17
2922 2949 7.582667 AAGAGGTGTTAAGTGCACTTAAAAT 57.417 32.000 39.88 28.70 46.35 1.82
2923 2950 7.399245 AAAGAGGTGTTAAGTGCACTTAAAA 57.601 32.000 39.88 35.15 46.35 1.52
2924 2951 7.399245 AAAAGAGGTGTTAAGTGCACTTAAA 57.601 32.000 39.88 29.42 46.35 1.52
2925 2952 8.508883 TTAAAAGAGGTGTTAAGTGCACTTAA 57.491 30.769 36.66 36.66 43.77 1.85
2926 2953 7.255001 GCTTAAAAGAGGTGTTAAGTGCACTTA 60.255 37.037 30.81 30.81 38.84 2.24
2927 2954 6.459710 GCTTAAAAGAGGTGTTAAGTGCACTT 60.460 38.462 32.97 32.97 38.84 3.16
2928 2955 5.008712 GCTTAAAAGAGGTGTTAAGTGCACT 59.991 40.000 15.25 15.25 38.84 4.40
2929 2956 5.212934 GCTTAAAAGAGGTGTTAAGTGCAC 58.787 41.667 9.40 9.40 38.84 4.57
2930 2957 4.277423 GGCTTAAAAGAGGTGTTAAGTGCA 59.723 41.667 5.38 0.00 38.84 4.57
2931 2958 4.321008 GGGCTTAAAAGAGGTGTTAAGTGC 60.321 45.833 5.38 0.00 38.84 4.40
2932 2959 4.217767 GGGGCTTAAAAGAGGTGTTAAGTG 59.782 45.833 5.38 0.00 38.84 3.16
2933 2960 4.404640 GGGGCTTAAAAGAGGTGTTAAGT 58.595 43.478 5.38 0.00 38.84 2.24
2934 2961 3.762288 GGGGGCTTAAAAGAGGTGTTAAG 59.238 47.826 0.00 0.00 39.36 1.85
2935 2962 3.140519 TGGGGGCTTAAAAGAGGTGTTAA 59.859 43.478 0.00 0.00 0.00 2.01
2936 2963 2.717515 TGGGGGCTTAAAAGAGGTGTTA 59.282 45.455 0.00 0.00 0.00 2.41
2937 2964 1.501604 TGGGGGCTTAAAAGAGGTGTT 59.498 47.619 0.00 0.00 0.00 3.32
2938 2965 1.154430 TGGGGGCTTAAAAGAGGTGT 58.846 50.000 0.00 0.00 0.00 4.16
2939 2966 2.102578 CATGGGGGCTTAAAAGAGGTG 58.897 52.381 0.00 0.00 0.00 4.00
2940 2967 1.619704 GCATGGGGGCTTAAAAGAGGT 60.620 52.381 0.00 0.00 0.00 3.85
2941 2968 1.114627 GCATGGGGGCTTAAAAGAGG 58.885 55.000 0.00 0.00 0.00 3.69
2942 2969 1.851304 TGCATGGGGGCTTAAAAGAG 58.149 50.000 0.00 0.00 34.04 2.85
2943 2970 2.500910 CAATGCATGGGGGCTTAAAAGA 59.499 45.455 0.00 0.00 34.04 2.52
2944 2971 2.420408 CCAATGCATGGGGGCTTAAAAG 60.420 50.000 12.90 0.00 46.27 2.27
2945 2972 1.558756 CCAATGCATGGGGGCTTAAAA 59.441 47.619 12.90 0.00 46.27 1.52
2946 2973 1.202330 CCAATGCATGGGGGCTTAAA 58.798 50.000 12.90 0.00 46.27 1.52
2947 2974 2.913463 CCAATGCATGGGGGCTTAA 58.087 52.632 12.90 0.00 46.27 1.85
2948 2975 4.703382 CCAATGCATGGGGGCTTA 57.297 55.556 12.90 0.00 46.27 3.09
2956 2983 0.475475 TAGGCCTCTCCCAATGCATG 59.525 55.000 9.68 0.00 34.51 4.06
2957 2984 1.144503 CTTAGGCCTCTCCCAATGCAT 59.855 52.381 9.68 0.00 34.51 3.96
2958 2985 0.548031 CTTAGGCCTCTCCCAATGCA 59.452 55.000 9.68 0.00 34.51 3.96
2959 2986 0.839946 TCTTAGGCCTCTCCCAATGC 59.160 55.000 9.68 0.00 34.51 3.56
2960 2987 2.441001 ACATCTTAGGCCTCTCCCAATG 59.559 50.000 9.68 8.66 34.51 2.82
2961 2988 2.708325 GACATCTTAGGCCTCTCCCAAT 59.292 50.000 9.68 0.00 34.51 3.16
2962 2989 2.119495 GACATCTTAGGCCTCTCCCAA 58.881 52.381 9.68 0.00 34.51 4.12
2963 2990 1.794714 GACATCTTAGGCCTCTCCCA 58.205 55.000 9.68 0.00 34.51 4.37
2964 2991 0.676736 CGACATCTTAGGCCTCTCCC 59.323 60.000 9.68 0.00 34.51 4.30
2965 2992 1.404843 ACGACATCTTAGGCCTCTCC 58.595 55.000 9.68 0.00 0.00 3.71
2966 2993 3.215975 AGTACGACATCTTAGGCCTCTC 58.784 50.000 9.68 0.00 0.00 3.20
2967 2994 3.300239 AGTACGACATCTTAGGCCTCT 57.700 47.619 9.68 0.00 0.00 3.69
2968 2995 4.388378 AAAGTACGACATCTTAGGCCTC 57.612 45.455 9.68 0.00 0.00 4.70
2969 2996 5.278364 CGATAAAGTACGACATCTTAGGCCT 60.278 44.000 11.78 11.78 0.00 5.19
2970 2997 4.916249 CGATAAAGTACGACATCTTAGGCC 59.084 45.833 0.00 0.00 0.00 5.19
2971 2998 5.755813 TCGATAAAGTACGACATCTTAGGC 58.244 41.667 0.00 0.00 33.62 3.93
2972 2999 9.327529 GTAATCGATAAAGTACGACATCTTAGG 57.672 37.037 0.00 0.00 41.17 2.69
2973 3000 9.874215 TGTAATCGATAAAGTACGACATCTTAG 57.126 33.333 0.00 0.00 41.17 2.18
2975 3002 9.745880 AATGTAATCGATAAAGTACGACATCTT 57.254 29.630 0.00 0.00 41.17 2.40
2981 3008 8.918658 GCCAATAATGTAATCGATAAAGTACGA 58.081 33.333 0.00 0.00 42.49 3.43
2982 3009 8.922676 AGCCAATAATGTAATCGATAAAGTACG 58.077 33.333 0.00 0.00 0.00 3.67
2988 3015 9.936759 TGTGATAGCCAATAATGTAATCGATAA 57.063 29.630 0.00 0.00 0.00 1.75
2989 3016 9.586435 CTGTGATAGCCAATAATGTAATCGATA 57.414 33.333 0.00 0.00 0.00 2.92
2990 3017 8.484641 CTGTGATAGCCAATAATGTAATCGAT 57.515 34.615 0.00 0.00 0.00 3.59
2991 3018 7.889589 CTGTGATAGCCAATAATGTAATCGA 57.110 36.000 0.00 0.00 0.00 3.59
3007 3034 4.701765 AGGCAGATACAAAGCTGTGATAG 58.298 43.478 11.93 0.00 41.33 2.08
3008 3035 4.760530 AGGCAGATACAAAGCTGTGATA 57.239 40.909 11.93 0.00 41.33 2.15
3009 3036 3.641434 AGGCAGATACAAAGCTGTGAT 57.359 42.857 11.93 0.00 41.33 3.06
3010 3037 3.423539 AAGGCAGATACAAAGCTGTGA 57.576 42.857 11.93 0.00 41.33 3.58
3011 3038 3.366679 CCAAAGGCAGATACAAAGCTGTG 60.367 47.826 1.09 1.09 41.33 3.66
3012 3039 2.821969 CCAAAGGCAGATACAAAGCTGT 59.178 45.455 0.00 0.00 41.33 4.40
3013 3040 3.498927 CCAAAGGCAGATACAAAGCTG 57.501 47.619 0.00 0.00 42.20 4.24
3119 3148 3.963129 TGATGTCCGGCCTAATTTTCTT 58.037 40.909 0.00 0.00 0.00 2.52
3151 3180 9.154847 GCCATGCTTATGACTAAAAAGAAATTT 57.845 29.630 0.00 0.00 0.00 1.82
3152 3181 8.534496 AGCCATGCTTATGACTAAAAAGAAATT 58.466 29.630 0.00 0.00 33.89 1.82
3162 3191 1.688735 AGCGAGCCATGCTTATGACTA 59.311 47.619 0.00 0.00 40.48 2.59
3176 3205 0.521291 TGGCACATGTTTTAGCGAGC 59.479 50.000 0.00 0.00 0.00 5.03
3223 3253 4.889409 ACATGGATATTGCCGATTCAGTTT 59.111 37.500 0.00 0.00 0.00 2.66
3234 3269 3.130869 TCCAACTTGCACATGGATATTGC 59.869 43.478 9.62 0.00 38.30 3.56
3321 3358 4.459685 GTGGAGTCAGACTGTTTAGAGCTA 59.540 45.833 8.15 0.00 0.00 3.32
3345 3382 7.649533 TGATATTGGATGCTCAAAAATCACT 57.350 32.000 0.00 0.00 32.81 3.41
3370 3407 6.982160 TTACCTTGGTCTTTGACTAGTACA 57.018 37.500 0.00 0.00 32.47 2.90
3380 3417 5.535030 GGAATGACACTTTACCTTGGTCTTT 59.465 40.000 0.00 0.00 0.00 2.52
3398 3435 3.143675 GCGTCTGCAGAAGGAATGA 57.856 52.632 27.42 0.00 42.15 2.57
3438 3475 4.221422 GCCGGTGCCGCAGAGATA 62.221 66.667 1.90 0.00 38.24 1.98
3447 3484 2.125952 GAAGCAATTGCCGGTGCC 60.126 61.111 26.45 6.23 41.88 5.01
3458 3495 0.759959 TAACAGTCGTGGGGAAGCAA 59.240 50.000 0.00 0.00 0.00 3.91
3478 3515 3.492309 GGATCAATGGTTGTTGTTGTGCA 60.492 43.478 0.00 0.00 0.00 4.57
3569 3607 0.101579 GGAGCAGGCGAGAAGAGTAC 59.898 60.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.