Multiple sequence alignment - TraesCS6B01G202800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G202800 chr6B 100.000 5108 0 0 1 5108 248358733 248363840 0.000000e+00 9433
1 TraesCS6B01G202800 chr6B 92.494 906 55 11 22 916 178214226 178213323 0.000000e+00 1284
2 TraesCS6B01G202800 chr6A 93.168 1610 79 13 905 2492 187762252 187763852 0.000000e+00 2335
3 TraesCS6B01G202800 chr6A 93.708 890 46 5 2491 3376 187771951 187772834 0.000000e+00 1325
4 TraesCS6B01G202800 chr6A 92.789 735 32 7 3490 4219 187772832 187773550 0.000000e+00 1044
5 TraesCS6B01G202800 chr6A 91.216 148 4 2 4244 4383 187773597 187773743 5.220000e-45 193
6 TraesCS6B01G202800 chr6D 94.462 1300 51 12 902 2189 142750420 142751710 0.000000e+00 1982
7 TraesCS6B01G202800 chr6D 94.014 969 43 4 2250 3218 142751710 142752663 0.000000e+00 1454
8 TraesCS6B01G202800 chr6D 93.231 916 50 9 1 906 60457118 60456205 0.000000e+00 1338
9 TraesCS6B01G202800 chr6D 94.149 564 29 2 3490 4050 142752919 142753481 0.000000e+00 856
10 TraesCS6B01G202800 chr6D 84.225 355 17 7 4042 4383 142842022 142842350 4.970000e-80 309
11 TraesCS6B01G202800 chr6D 94.578 166 5 2 3215 3376 142752756 142752921 2.360000e-63 254
12 TraesCS6B01G202800 chr3A 98.559 902 12 1 1 902 175807591 175808491 0.000000e+00 1592
13 TraesCS6B01G202800 chr2D 93.057 893 51 9 22 906 80626300 80625411 0.000000e+00 1295
14 TraesCS6B01G202800 chr2D 89.189 148 9 7 3345 3491 352206103 352206244 1.460000e-40 178
15 TraesCS6B01G202800 chr7D 93.018 888 46 10 22 904 177572252 177571376 0.000000e+00 1282
16 TraesCS6B01G202800 chr7D 92.282 907 53 8 1 902 87176054 87176948 0.000000e+00 1271
17 TraesCS6B01G202800 chr2B 92.131 915 61 7 2 907 32183596 32182684 0.000000e+00 1280
18 TraesCS6B01G202800 chr2B 97.996 549 11 0 4560 5108 440150888 440150340 0.000000e+00 953
19 TraesCS6B01G202800 chr1B 92.148 917 57 12 22 931 302038425 302037517 0.000000e+00 1280
20 TraesCS6B01G202800 chr5B 92.148 917 55 12 2 911 166707272 166706366 0.000000e+00 1279
21 TraesCS6B01G202800 chr5B 97.649 553 12 1 4556 5108 336117736 336117185 0.000000e+00 948
22 TraesCS6B01G202800 chr3B 98.011 553 8 3 4557 5108 357007802 357008352 0.000000e+00 957
23 TraesCS6B01G202800 chr3B 98.000 550 8 3 4560 5108 777079010 777078463 0.000000e+00 952
24 TraesCS6B01G202800 chr3B 95.082 122 6 0 3370 3491 658489546 658489667 5.220000e-45 193
25 TraesCS6B01G202800 chrUn 98.000 550 8 3 4560 5108 333009688 333010235 0.000000e+00 952
26 TraesCS6B01G202800 chrUn 97.455 550 11 3 4560 5108 446282516 446283063 0.000000e+00 935
27 TraesCS6B01G202800 chr4B 97.996 549 9 2 4560 5108 558847434 558846888 0.000000e+00 952
28 TraesCS6B01G202800 chr5A 97.818 550 11 1 4559 5108 397694766 397694218 0.000000e+00 948
29 TraesCS6B01G202800 chr5A 94.086 186 10 1 4379 4563 126263540 126263725 1.080000e-71 281
30 TraesCS6B01G202800 chr5A 94.475 181 10 0 4383 4563 568332317 568332137 3.890000e-71 279
31 TraesCS6B01G202800 chr1A 97.482 556 11 3 4554 5108 119356077 119356630 0.000000e+00 946
32 TraesCS6B01G202800 chr4A 96.154 182 7 0 4382 4563 520950320 520950501 1.080000e-76 298
33 TraesCS6B01G202800 chr4A 95.604 182 8 0 4382 4563 574837145 574836964 5.000000e-75 292
34 TraesCS6B01G202800 chr4A 95.028 181 9 0 4383 4563 609652604 609652784 8.370000e-73 285
35 TraesCS6B01G202800 chr4A 94.054 185 10 1 4380 4563 163799579 163799395 3.890000e-71 279
36 TraesCS6B01G202800 chr4A 95.082 122 6 0 3371 3492 669084081 669083960 5.220000e-45 193
37 TraesCS6B01G202800 chr7A 95.556 180 8 0 4384 4563 130299818 130299997 6.470000e-74 289
38 TraesCS6B01G202800 chr7A 94.086 186 10 1 4379 4563 110477338 110477523 1.080000e-71 281
39 TraesCS6B01G202800 chr7A 95.868 121 5 0 3373 3493 375886611 375886491 4.030000e-46 196
40 TraesCS6B01G202800 chr2A 91.753 194 16 0 4370 4563 686195535 686195728 2.340000e-68 270
41 TraesCS6B01G202800 chr4D 97.521 121 3 0 3374 3494 367720887 367720767 1.860000e-49 207
42 TraesCS6B01G202800 chr4D 91.791 134 9 2 3374 3506 367720659 367720527 8.730000e-43 185
43 TraesCS6B01G202800 chr7B 94.615 130 5 2 3365 3493 143329523 143329395 3.120000e-47 200
44 TraesCS6B01G202800 chr5D 96.694 121 3 1 3374 3493 461071761 461071641 3.120000e-47 200
45 TraesCS6B01G202800 chr1D 94.958 119 4 2 3374 3491 184046405 184046522 8.730000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G202800 chr6B 248358733 248363840 5107 False 9433.0 9433 100.00000 1 5108 1 chr6B.!!$F1 5107
1 TraesCS6B01G202800 chr6B 178213323 178214226 903 True 1284.0 1284 92.49400 22 916 1 chr6B.!!$R1 894
2 TraesCS6B01G202800 chr6A 187762252 187763852 1600 False 2335.0 2335 93.16800 905 2492 1 chr6A.!!$F1 1587
3 TraesCS6B01G202800 chr6A 187771951 187773743 1792 False 854.0 1325 92.57100 2491 4383 3 chr6A.!!$F2 1892
4 TraesCS6B01G202800 chr6D 60456205 60457118 913 True 1338.0 1338 93.23100 1 906 1 chr6D.!!$R1 905
5 TraesCS6B01G202800 chr6D 142750420 142753481 3061 False 1136.5 1982 94.30075 902 4050 4 chr6D.!!$F2 3148
6 TraesCS6B01G202800 chr3A 175807591 175808491 900 False 1592.0 1592 98.55900 1 902 1 chr3A.!!$F1 901
7 TraesCS6B01G202800 chr2D 80625411 80626300 889 True 1295.0 1295 93.05700 22 906 1 chr2D.!!$R1 884
8 TraesCS6B01G202800 chr7D 177571376 177572252 876 True 1282.0 1282 93.01800 22 904 1 chr7D.!!$R1 882
9 TraesCS6B01G202800 chr7D 87176054 87176948 894 False 1271.0 1271 92.28200 1 902 1 chr7D.!!$F1 901
10 TraesCS6B01G202800 chr2B 32182684 32183596 912 True 1280.0 1280 92.13100 2 907 1 chr2B.!!$R1 905
11 TraesCS6B01G202800 chr2B 440150340 440150888 548 True 953.0 953 97.99600 4560 5108 1 chr2B.!!$R2 548
12 TraesCS6B01G202800 chr1B 302037517 302038425 908 True 1280.0 1280 92.14800 22 931 1 chr1B.!!$R1 909
13 TraesCS6B01G202800 chr5B 166706366 166707272 906 True 1279.0 1279 92.14800 2 911 1 chr5B.!!$R1 909
14 TraesCS6B01G202800 chr5B 336117185 336117736 551 True 948.0 948 97.64900 4556 5108 1 chr5B.!!$R2 552
15 TraesCS6B01G202800 chr3B 357007802 357008352 550 False 957.0 957 98.01100 4557 5108 1 chr3B.!!$F1 551
16 TraesCS6B01G202800 chr3B 777078463 777079010 547 True 952.0 952 98.00000 4560 5108 1 chr3B.!!$R1 548
17 TraesCS6B01G202800 chrUn 333009688 333010235 547 False 952.0 952 98.00000 4560 5108 1 chrUn.!!$F1 548
18 TraesCS6B01G202800 chrUn 446282516 446283063 547 False 935.0 935 97.45500 4560 5108 1 chrUn.!!$F2 548
19 TraesCS6B01G202800 chr4B 558846888 558847434 546 True 952.0 952 97.99600 4560 5108 1 chr4B.!!$R1 548
20 TraesCS6B01G202800 chr5A 397694218 397694766 548 True 948.0 948 97.81800 4559 5108 1 chr5A.!!$R1 549
21 TraesCS6B01G202800 chr1A 119356077 119356630 553 False 946.0 946 97.48200 4554 5108 1 chr1A.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1020 0.911769 ATCATCCTCCAGCGACCAAA 59.088 50.0 0.0 0.0 0.0 3.28 F
2133 2187 0.107017 ACCTCCAAGCATCATTCCCG 60.107 55.0 0.0 0.0 0.0 5.14 F
3492 3647 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2713 2768 1.002134 ACCCCTGCACGAAAGGATG 60.002 57.895 0.00 0.00 36.91 3.51 R
3885 4044 0.035056 GAGCTAAGTGGGTGGCATGT 60.035 55.000 0.00 0.00 0.00 3.21 R
4527 4734 0.035820 ATATGGTGAAACGGCCGTGT 60.036 50.000 34.95 29.73 38.12 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
811 830 4.096382 GCCTCGCAAAAATAAAGGAGATGA 59.904 41.667 0.00 0.00 0.00 2.92
989 1020 0.911769 ATCATCCTCCAGCGACCAAA 59.088 50.000 0.00 0.00 0.00 3.28
1015 1046 0.595588 TGGCGCCACACAAAACATAG 59.404 50.000 29.03 0.00 0.00 2.23
1034 1065 3.142393 CCGATAGCCTGGTCCTGG 58.858 66.667 10.46 10.46 0.00 4.45
1035 1066 1.762460 CCGATAGCCTGGTCCTGGT 60.762 63.158 15.72 6.01 0.00 4.00
1130 1163 2.756283 CCGCCTCCTCCTCGACTT 60.756 66.667 0.00 0.00 0.00 3.01
1221 1254 0.397957 GGGTTCTCCTCCTCCTCCTC 60.398 65.000 0.00 0.00 0.00 3.71
1222 1255 0.397957 GGTTCTCCTCCTCCTCCTCC 60.398 65.000 0.00 0.00 0.00 4.30
1223 1256 0.634465 GTTCTCCTCCTCCTCCTCCT 59.366 60.000 0.00 0.00 0.00 3.69
1315 1349 2.707902 GGCCTAAGATTTCTGCCGG 58.292 57.895 0.00 0.00 31.55 6.13
1327 1361 2.435938 TGCCGGCTGGACGAATTC 60.436 61.111 29.70 0.00 37.49 2.17
1550 1586 6.875972 ACTGGTAGGTTAGATGTCTGAAAT 57.124 37.500 0.00 0.00 0.00 2.17
1565 1601 6.638610 TGTCTGAAATTTCTTTCCTGCAAAA 58.361 32.000 18.64 0.00 40.09 2.44
1568 1604 8.066000 GTCTGAAATTTCTTTCCTGCAAAAATG 58.934 33.333 18.64 0.00 40.09 2.32
1569 1605 7.769970 TCTGAAATTTCTTTCCTGCAAAAATGT 59.230 29.630 18.64 0.00 40.09 2.71
1635 1671 0.674895 AATGTCTGGCGCAGAACCTC 60.675 55.000 10.83 0.00 42.46 3.85
1784 1823 4.082787 TCGATTTTCATGAAGCAACCTTCC 60.083 41.667 8.41 0.00 45.53 3.46
1826 1865 3.633525 TGCCACAGATTATTGATGCTTCC 59.366 43.478 0.00 0.00 0.00 3.46
1925 1964 6.311200 GGTATGTGCATTTGACCATCTTTTTC 59.689 38.462 0.00 0.00 0.00 2.29
2030 2069 4.214986 TGAACCACTTTCAGTCTGTGAA 57.785 40.909 0.00 0.00 43.82 3.18
2133 2187 0.107017 ACCTCCAAGCATCATTCCCG 60.107 55.000 0.00 0.00 0.00 5.14
2142 2196 4.900635 AGCATCATTCCCGTTTTATCAC 57.099 40.909 0.00 0.00 0.00 3.06
2150 2204 4.920640 TCCCGTTTTATCACTGCAAAAA 57.079 36.364 0.00 0.00 0.00 1.94
2194 2248 2.753168 GCTTTGTTTCCCTCCTTCACCT 60.753 50.000 0.00 0.00 0.00 4.00
2196 2250 2.951229 TGTTTCCCTCCTTCACCTTC 57.049 50.000 0.00 0.00 0.00 3.46
2229 2284 5.475273 AGAACATGACATTTATCACTGCG 57.525 39.130 0.00 0.00 0.00 5.18
2352 2407 2.622942 TGCTGGATTTGGACTGTTTGTC 59.377 45.455 0.00 0.00 44.63 3.18
2404 2459 5.044328 TGTCCTCTGTACTGGTACCTAAGAT 60.044 44.000 14.36 0.00 35.26 2.40
2428 2483 9.717942 GATTATGCTCATCTAGTATTCCAACTT 57.282 33.333 0.00 0.00 32.21 2.66
2607 2662 8.583765 TCGACGAATGCATCTTATATAATTTCG 58.416 33.333 0.00 4.30 39.29 3.46
2645 2700 1.492176 CTGGTATGCCCATCCTCTGTT 59.508 52.381 0.00 0.00 44.15 3.16
2666 2721 8.593679 TCTGTTCTCTGTTTATAGACCATTTCA 58.406 33.333 0.00 0.00 0.00 2.69
2823 2878 6.349300 ACATATACAGCAAGGTTAGACAAGG 58.651 40.000 0.00 0.00 0.00 3.61
2859 2914 5.984926 ACTGACATAAACCTTTTGTGCATTG 59.015 36.000 0.00 0.00 0.00 2.82
2909 2964 6.515272 TTTTAGCTTGGAATTAGCAAGGAG 57.485 37.500 0.00 0.00 41.11 3.69
2916 2971 2.356069 GGAATTAGCAAGGAGAAAGCCG 59.644 50.000 0.00 0.00 0.00 5.52
2918 2973 3.906720 ATTAGCAAGGAGAAAGCCGTA 57.093 42.857 0.00 0.00 0.00 4.02
2920 2975 2.100605 AGCAAGGAGAAAGCCGTAAG 57.899 50.000 0.00 0.00 0.00 2.34
2992 3047 4.142945 GCATCTGAACTAGCAGTTTCACAG 60.143 45.833 3.56 6.49 38.80 3.66
3009 3064 9.066892 AGTTTCACAGTCATTATTAAGCTTTGA 57.933 29.630 3.20 0.00 0.00 2.69
3023 3078 0.452784 CTTTGAGTAAACAGCGCGCC 60.453 55.000 30.33 11.57 0.00 6.53
3032 3087 3.659092 CAGCGCGCCTGTTGGAAA 61.659 61.111 30.33 0.00 36.79 3.13
3033 3088 2.672996 AGCGCGCCTGTTGGAAAT 60.673 55.556 30.33 0.79 34.57 2.17
3061 3116 5.183713 ACAAAATGGACCTCATGTGTATGTG 59.816 40.000 0.00 0.00 34.84 3.21
3072 3127 6.011476 TCATGTGTATGTGGACAATTGTTG 57.989 37.500 13.36 2.41 35.73 3.33
3085 3140 5.629435 GGACAATTGTTGTAGCAGTTTAAGC 59.371 40.000 13.36 0.00 45.52 3.09
3104 3159 7.807977 TTAAGCCATCATTATCTGTTCCTTC 57.192 36.000 0.00 0.00 0.00 3.46
3105 3160 4.723309 AGCCATCATTATCTGTTCCTTCC 58.277 43.478 0.00 0.00 0.00 3.46
3117 3172 1.876156 GTTCCTTCCACTGCAGTTGAG 59.124 52.381 18.94 14.55 0.00 3.02
3126 3181 0.947244 CTGCAGTTGAGCGGTTTTCT 59.053 50.000 5.25 0.00 36.15 2.52
3129 3184 3.146066 TGCAGTTGAGCGGTTTTCTATT 58.854 40.909 0.00 0.00 37.31 1.73
3133 3188 2.192664 TGAGCGGTTTTCTATTGGCA 57.807 45.000 0.00 0.00 0.00 4.92
3176 3231 0.806492 GCAGGCGCAGTAGTTAGTCC 60.806 60.000 10.83 0.00 38.36 3.85
3193 3248 0.891373 TCCTTCAGGCTTCACTCTCG 59.109 55.000 0.00 0.00 34.44 4.04
3199 3254 1.001406 CAGGCTTCACTCTCGTTTCCT 59.999 52.381 0.00 0.00 0.00 3.36
3231 3382 6.112734 ACGAATATACTGGTCAATGCTTTGA 58.887 36.000 10.76 10.76 39.54 2.69
3250 3401 7.176515 TGCTTTGACACTGACATTATTGGTAAT 59.823 33.333 0.00 0.00 0.00 1.89
3344 3499 3.497763 CCAGGTAAAGTGACATTGACCCA 60.498 47.826 0.00 0.00 0.00 4.51
3376 3531 4.395959 TTCAGAACCGTTGTCTGTTACT 57.604 40.909 7.01 0.00 33.57 2.24
3377 3532 3.973657 TCAGAACCGTTGTCTGTTACTC 58.026 45.455 7.01 0.00 33.57 2.59
3378 3533 2.724690 CAGAACCGTTGTCTGTTACTCG 59.275 50.000 0.00 0.00 0.00 4.18
3381 3536 1.335689 ACCGTTGTCTGTTACTCGCTC 60.336 52.381 0.00 0.00 0.00 5.03
3382 3537 1.337821 CGTTGTCTGTTACTCGCTCC 58.662 55.000 0.00 0.00 0.00 4.70
3383 3538 1.337821 GTTGTCTGTTACTCGCTCCG 58.662 55.000 0.00 0.00 0.00 4.63
3384 3539 0.956633 TTGTCTGTTACTCGCTCCGT 59.043 50.000 0.00 0.00 0.00 4.69
3385 3540 0.520404 TGTCTGTTACTCGCTCCGTC 59.480 55.000 0.00 0.00 0.00 4.79
3386 3541 0.179169 GTCTGTTACTCGCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
3387 3542 1.226323 CTGTTACTCGCTCCGTCCG 60.226 63.158 0.00 0.00 0.00 4.79
3388 3543 1.642037 CTGTTACTCGCTCCGTCCGA 61.642 60.000 0.00 0.00 0.00 4.55
3389 3544 1.236616 TGTTACTCGCTCCGTCCGAA 61.237 55.000 0.00 0.00 33.92 4.30
3390 3545 0.109597 GTTACTCGCTCCGTCCGAAA 60.110 55.000 0.00 0.00 33.92 3.46
3391 3546 0.597568 TTACTCGCTCCGTCCGAAAA 59.402 50.000 0.00 0.00 33.92 2.29
3392 3547 0.597568 TACTCGCTCCGTCCGAAAAA 59.402 50.000 0.00 0.00 33.92 1.94
3393 3548 0.666577 ACTCGCTCCGTCCGAAAAAG 60.667 55.000 0.00 0.00 33.92 2.27
3394 3549 0.666577 CTCGCTCCGTCCGAAAAAGT 60.667 55.000 0.00 0.00 33.92 2.66
3395 3550 0.249573 TCGCTCCGTCCGAAAAAGTT 60.250 50.000 0.00 0.00 0.00 2.66
3396 3551 0.584876 CGCTCCGTCCGAAAAAGTTT 59.415 50.000 0.00 0.00 0.00 2.66
3397 3552 1.659211 CGCTCCGTCCGAAAAAGTTTG 60.659 52.381 0.00 0.00 0.00 2.93
3398 3553 1.332686 GCTCCGTCCGAAAAAGTTTGT 59.667 47.619 0.00 0.00 0.00 2.83
3399 3554 2.601504 GCTCCGTCCGAAAAAGTTTGTC 60.602 50.000 0.00 0.00 0.00 3.18
3400 3555 1.941975 TCCGTCCGAAAAAGTTTGTCC 59.058 47.619 0.00 0.00 0.00 4.02
3401 3556 1.002142 CCGTCCGAAAAAGTTTGTCCC 60.002 52.381 0.00 0.00 0.00 4.46
3402 3557 1.671845 CGTCCGAAAAAGTTTGTCCCA 59.328 47.619 0.00 0.00 0.00 4.37
3403 3558 2.097791 CGTCCGAAAAAGTTTGTCCCAA 59.902 45.455 0.00 0.00 0.00 4.12
3404 3559 3.702330 GTCCGAAAAAGTTTGTCCCAAG 58.298 45.455 0.00 0.00 0.00 3.61
3405 3560 2.100087 TCCGAAAAAGTTTGTCCCAAGC 59.900 45.455 0.00 0.00 0.00 4.01
3406 3561 2.100749 CCGAAAAAGTTTGTCCCAAGCT 59.899 45.455 0.00 0.00 0.00 3.74
3407 3562 3.430236 CCGAAAAAGTTTGTCCCAAGCTT 60.430 43.478 0.00 0.00 0.00 3.74
3408 3563 3.551485 CGAAAAAGTTTGTCCCAAGCTTG 59.449 43.478 19.93 19.93 0.00 4.01
3409 3564 4.503910 GAAAAAGTTTGTCCCAAGCTTGT 58.496 39.130 24.35 1.28 0.00 3.16
3410 3565 3.801114 AAAGTTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
3411 3566 2.736670 AGTTTGTCCCAAGCTTGTCT 57.263 45.000 24.35 8.36 0.00 3.41
3412 3567 3.018423 AGTTTGTCCCAAGCTTGTCTT 57.982 42.857 24.35 0.00 34.78 3.01
3413 3568 3.365472 AGTTTGTCCCAAGCTTGTCTTT 58.635 40.909 24.35 0.00 31.27 2.52
3414 3569 3.381590 AGTTTGTCCCAAGCTTGTCTTTC 59.618 43.478 24.35 10.65 31.27 2.62
3415 3570 2.727123 TGTCCCAAGCTTGTCTTTCA 57.273 45.000 24.35 12.85 31.27 2.69
3416 3571 3.011566 TGTCCCAAGCTTGTCTTTCAA 57.988 42.857 24.35 1.41 31.27 2.69
3417 3572 3.360867 TGTCCCAAGCTTGTCTTTCAAA 58.639 40.909 24.35 0.00 35.48 2.69
3418 3573 3.960102 TGTCCCAAGCTTGTCTTTCAAAT 59.040 39.130 24.35 0.00 35.48 2.32
3419 3574 4.202141 TGTCCCAAGCTTGTCTTTCAAATG 60.202 41.667 24.35 5.47 35.48 2.32
3420 3575 3.321682 TCCCAAGCTTGTCTTTCAAATGG 59.678 43.478 24.35 14.01 35.48 3.16
3421 3576 3.321682 CCCAAGCTTGTCTTTCAAATGGA 59.678 43.478 24.35 0.00 36.92 3.41
3422 3577 4.020839 CCCAAGCTTGTCTTTCAAATGGAT 60.021 41.667 24.35 0.00 36.92 3.41
3423 3578 4.927425 CCAAGCTTGTCTTTCAAATGGATG 59.073 41.667 24.35 0.00 36.92 3.51
3424 3579 5.510179 CCAAGCTTGTCTTTCAAATGGATGT 60.510 40.000 24.35 0.00 36.92 3.06
3425 3580 6.294675 CCAAGCTTGTCTTTCAAATGGATGTA 60.295 38.462 24.35 0.00 36.92 2.29
3426 3581 7.318141 CAAGCTTGTCTTTCAAATGGATGTAT 58.682 34.615 18.65 0.00 35.48 2.29
3427 3582 7.093322 AGCTTGTCTTTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
3428 3583 6.888632 AGCTTGTCTTTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
3429 3584 8.049117 AGCTTGTCTTTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
3430 3585 8.341173 GCTTGTCTTTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
3431 3586 7.792374 TGTCTTTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
3432 3587 7.337938 TGTCTTTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
3433 3588 7.280876 TGTCTTTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
3434 3589 7.497249 GTCTTTCAAATGGATGTATCTAGCACT 59.503 37.037 0.00 0.00 0.00 4.40
3435 3590 8.704668 TCTTTCAAATGGATGTATCTAGCACTA 58.295 33.333 0.00 0.00 0.00 2.74
3436 3591 9.330063 CTTTCAAATGGATGTATCTAGCACTAA 57.670 33.333 0.00 0.00 0.00 2.24
3437 3592 8.662781 TTCAAATGGATGTATCTAGCACTAAC 57.337 34.615 0.00 0.00 0.00 2.34
3438 3593 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3439 3594 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3440 3595 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3441 3596 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3442 3597 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3443 3598 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3455 3610 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3456 3611 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3457 3612 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3458 3613 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3459 3614 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
3460 3615 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
3461 3616 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
3462 3617 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
3463 3618 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
3464 3619 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3465 3620 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3466 3621 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3467 3622 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3468 3623 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3469 3624 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3470 3625 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3471 3626 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3472 3627 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3473 3628 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3474 3629 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3475 3630 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3476 3631 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3477 3632 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3478 3633 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
3479 3634 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
3480 3635 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
3481 3636 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3482 3637 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3483 3638 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3484 3639 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3485 3640 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3486 3641 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3487 3642 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3488 3643 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3489 3644 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
3490 3645 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
3491 3646 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3492 3647 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
3493 3648 0.038744 TTCGGACGGAGGGAGTACTT 59.961 55.000 0.00 0.00 0.00 2.24
3494 3649 0.038744 TCGGACGGAGGGAGTACTTT 59.961 55.000 0.00 0.00 0.00 2.66
3495 3650 0.455005 CGGACGGAGGGAGTACTTTC 59.545 60.000 0.00 0.00 0.00 2.62
3496 3651 1.553706 GGACGGAGGGAGTACTTTCA 58.446 55.000 0.00 0.00 0.00 2.69
3499 3654 1.893801 ACGGAGGGAGTACTTTCAGTG 59.106 52.381 0.00 0.00 0.00 3.66
3537 3692 6.332630 CCACTTTGGTATGGACATTTGATTC 58.667 40.000 0.00 0.00 38.34 2.52
3556 3711 5.708697 TGATTCATCATCACAAGAACTTGCT 59.291 36.000 13.50 0.34 44.03 3.91
3567 3722 9.836864 ATCACAAGAACTTGCTACATATCAATA 57.163 29.630 13.50 0.00 44.03 1.90
3624 3779 3.077359 AGATGTTTCACTGCAGTTAGCC 58.923 45.455 18.94 6.51 44.83 3.93
3634 3789 1.084289 GCAGTTAGCCGTCGGATTTT 58.916 50.000 17.49 0.00 37.23 1.82
3635 3790 2.273557 GCAGTTAGCCGTCGGATTTTA 58.726 47.619 17.49 0.00 37.23 1.52
3651 3806 3.973206 TTTTATCTCAGAGAACGCCCA 57.027 42.857 3.63 0.00 0.00 5.36
3831 3987 3.681874 GCACGGCTTTATTCCTCTACCTT 60.682 47.826 0.00 0.00 0.00 3.50
3885 4044 3.826157 CCCTTCTGCAAAAGTTCATGGTA 59.174 43.478 0.00 0.00 0.00 3.25
4078 4237 4.431809 TGCCTGTCATTCTTGTGTTTTTG 58.568 39.130 0.00 0.00 0.00 2.44
4116 4275 1.878953 AGTGGTTGGAACTAGTTGCG 58.121 50.000 20.46 0.00 33.32 4.85
4122 4281 1.666872 GGAACTAGTTGCGCGTGGT 60.667 57.895 14.14 0.00 0.00 4.16
4149 4308 8.856153 TCAACCTCTTTACAGTTATTATTGCA 57.144 30.769 0.00 0.00 0.00 4.08
4193 4352 1.398390 GTTCATCGGCTCATGTGTTCC 59.602 52.381 0.00 0.00 0.00 3.62
4211 4410 2.671177 CGGTCTCAAGCAGGCAACG 61.671 63.158 0.00 0.00 46.39 4.10
4234 4433 4.911610 GCCATTTTATGATGATGCGTACAC 59.088 41.667 0.00 0.00 0.00 2.90
4235 4434 5.505489 GCCATTTTATGATGATGCGTACACA 60.505 40.000 0.00 0.00 0.00 3.72
4236 4435 5.909054 CCATTTTATGATGATGCGTACACAC 59.091 40.000 0.00 0.00 0.00 3.82
4245 4444 4.489683 CGTACACACGTGCTTTGC 57.510 55.556 17.22 2.45 43.31 3.68
4246 4445 1.436446 CGTACACACGTGCTTTGCG 60.436 57.895 17.22 11.41 43.31 4.85
4247 4446 1.639534 GTACACACGTGCTTTGCGT 59.360 52.632 17.22 6.05 43.90 5.24
4248 4447 0.854062 GTACACACGTGCTTTGCGTA 59.146 50.000 17.22 5.05 40.90 4.42
4249 4448 0.854062 TACACACGTGCTTTGCGTAC 59.146 50.000 17.22 0.00 40.90 3.67
4250 4449 1.084935 ACACACGTGCTTTGCGTACA 61.085 50.000 17.22 0.00 40.90 2.90
4251 4450 0.653323 CACACGTGCTTTGCGTACAC 60.653 55.000 17.22 0.00 40.90 2.90
4292 4491 1.308047 TCGTTGCAAGCACAGACATT 58.692 45.000 0.00 0.00 0.00 2.71
4293 4492 2.488952 TCGTTGCAAGCACAGACATTA 58.511 42.857 0.00 0.00 0.00 1.90
4294 4493 2.223144 TCGTTGCAAGCACAGACATTAC 59.777 45.455 0.00 0.00 0.00 1.89
4295 4494 2.032117 CGTTGCAAGCACAGACATTACA 60.032 45.455 0.00 0.00 0.00 2.41
4296 4495 3.558505 GTTGCAAGCACAGACATTACAG 58.441 45.455 0.00 0.00 0.00 2.74
4307 4506 4.867047 ACAGACATTACAGCATCTTCTTCG 59.133 41.667 0.00 0.00 0.00 3.79
4371 4578 3.281727 TTTGAGCACCAGTCTGACTTT 57.718 42.857 7.77 0.00 0.00 2.66
4383 4590 7.591426 CACCAGTCTGACTTTTGCTTTAAATAC 59.409 37.037 7.77 0.00 0.00 1.89
4384 4591 6.797033 CCAGTCTGACTTTTGCTTTAAATACG 59.203 38.462 7.77 0.00 0.00 3.06
4385 4592 6.797033 CAGTCTGACTTTTGCTTTAAATACGG 59.203 38.462 7.77 0.00 0.00 4.02
4386 4593 6.708949 AGTCTGACTTTTGCTTTAAATACGGA 59.291 34.615 4.06 0.00 0.00 4.69
4387 4594 7.227910 AGTCTGACTTTTGCTTTAAATACGGAA 59.772 33.333 4.06 0.00 0.00 4.30
4388 4595 7.858879 GTCTGACTTTTGCTTTAAATACGGAAA 59.141 33.333 0.00 0.00 0.00 3.13
4389 4596 8.573035 TCTGACTTTTGCTTTAAATACGGAAAT 58.427 29.630 0.00 0.00 0.00 2.17
4390 4597 8.514136 TGACTTTTGCTTTAAATACGGAAATG 57.486 30.769 0.00 0.00 0.00 2.32
4391 4598 8.138712 TGACTTTTGCTTTAAATACGGAAATGT 58.861 29.630 9.51 9.51 32.17 2.71
4392 4599 8.880878 ACTTTTGCTTTAAATACGGAAATGTT 57.119 26.923 5.98 0.00 0.00 2.71
4393 4600 9.968870 ACTTTTGCTTTAAATACGGAAATGTTA 57.031 25.926 5.98 0.00 0.00 2.41
4396 4603 8.437443 TTGCTTTAAATACGGAAATGTTAACG 57.563 30.769 0.26 0.00 0.00 3.18
4397 4604 6.523893 TGCTTTAAATACGGAAATGTTAACGC 59.476 34.615 0.26 0.00 32.56 4.84
4398 4605 6.021232 GCTTTAAATACGGAAATGTTAACGCC 60.021 38.462 0.26 0.00 0.00 5.68
4399 4606 4.359971 AAATACGGAAATGTTAACGCCC 57.640 40.909 0.26 0.00 0.00 6.13
4400 4607 2.469274 TACGGAAATGTTAACGCCCA 57.531 45.000 0.26 0.00 0.00 5.36
4401 4608 0.876399 ACGGAAATGTTAACGCCCAC 59.124 50.000 0.26 0.00 0.00 4.61
4402 4609 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
4403 4610 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
4404 4611 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
4411 4618 2.125673 ACGCCCACACGTATGAGC 60.126 61.111 0.00 0.00 46.19 4.26
4412 4619 3.254654 CGCCCACACGTATGAGCG 61.255 66.667 8.66 8.66 37.17 5.03
4413 4620 2.125673 GCCCACACGTATGAGCGT 60.126 61.111 0.00 0.00 46.88 5.07
4414 4621 1.740296 GCCCACACGTATGAGCGTT 60.740 57.895 0.00 0.00 43.83 4.84
4415 4622 1.296056 GCCCACACGTATGAGCGTTT 61.296 55.000 0.00 0.00 43.83 3.60
4416 4623 0.442310 CCCACACGTATGAGCGTTTG 59.558 55.000 0.00 0.00 43.83 2.93
4417 4624 0.179225 CCACACGTATGAGCGTTTGC 60.179 55.000 0.00 0.00 43.83 3.68
4418 4625 0.510790 CACACGTATGAGCGTTTGCA 59.489 50.000 0.00 0.00 46.23 4.08
4419 4626 1.128507 CACACGTATGAGCGTTTGCAT 59.871 47.619 0.00 0.00 46.23 3.96
4420 4627 1.393539 ACACGTATGAGCGTTTGCATC 59.606 47.619 0.00 0.00 46.23 3.91
4421 4628 1.660607 CACGTATGAGCGTTTGCATCT 59.339 47.619 0.00 0.00 46.23 2.90
4422 4629 2.094258 CACGTATGAGCGTTTGCATCTT 59.906 45.455 0.00 0.00 46.23 2.40
4423 4630 2.094258 ACGTATGAGCGTTTGCATCTTG 59.906 45.455 0.00 0.00 46.23 3.02
4424 4631 2.444351 GTATGAGCGTTTGCATCTTGC 58.556 47.619 0.00 0.00 46.23 4.01
4425 4632 0.171903 ATGAGCGTTTGCATCTTGCC 59.828 50.000 0.00 0.00 44.23 4.52
4426 4633 1.153958 GAGCGTTTGCATCTTGCCC 60.154 57.895 0.00 0.00 44.23 5.36
4427 4634 1.865788 GAGCGTTTGCATCTTGCCCA 61.866 55.000 0.00 0.00 44.23 5.36
4428 4635 1.734117 GCGTTTGCATCTTGCCCAC 60.734 57.895 0.00 0.00 44.23 4.61
4429 4636 1.659233 CGTTTGCATCTTGCCCACA 59.341 52.632 0.00 0.00 44.23 4.17
4430 4637 0.664166 CGTTTGCATCTTGCCCACAC 60.664 55.000 0.00 0.00 44.23 3.82
4431 4638 0.664166 GTTTGCATCTTGCCCACACG 60.664 55.000 0.00 0.00 44.23 4.49
4432 4639 2.419057 TTTGCATCTTGCCCACACGC 62.419 55.000 0.00 0.00 44.23 5.34
4433 4640 4.465512 GCATCTTGCCCACACGCG 62.466 66.667 3.53 3.53 37.42 6.01
4434 4641 3.049674 CATCTTGCCCACACGCGT 61.050 61.111 5.58 5.58 0.00 6.01
4435 4642 2.281484 ATCTTGCCCACACGCGTT 60.281 55.556 10.22 0.00 0.00 4.84
4436 4643 2.616330 ATCTTGCCCACACGCGTTG 61.616 57.895 10.22 11.76 0.00 4.10
4437 4644 3.276091 CTTGCCCACACGCGTTGA 61.276 61.111 10.22 0.00 0.00 3.18
4438 4645 2.593148 TTGCCCACACGCGTTGAT 60.593 55.556 10.22 0.00 0.00 2.57
4439 4646 2.513065 CTTGCCCACACGCGTTGATC 62.513 60.000 10.22 7.35 0.00 2.92
4440 4647 3.799755 GCCCACACGCGTTGATCC 61.800 66.667 10.22 0.00 0.00 3.36
4441 4648 3.487202 CCCACACGCGTTGATCCG 61.487 66.667 10.22 0.00 0.00 4.18
4449 4656 2.807895 CGTTGATCCGCGTCCGTT 60.808 61.111 4.92 0.00 0.00 4.44
4450 4657 2.785105 CGTTGATCCGCGTCCGTTC 61.785 63.158 4.92 0.00 0.00 3.95
4451 4658 2.505337 TTGATCCGCGTCCGTTCG 60.505 61.111 4.92 0.00 0.00 3.95
4452 4659 3.271706 TTGATCCGCGTCCGTTCGT 62.272 57.895 4.92 0.00 0.00 3.85
4453 4660 3.245315 GATCCGCGTCCGTTCGTG 61.245 66.667 4.92 3.64 40.38 4.35
4454 4661 3.672255 GATCCGCGTCCGTTCGTGA 62.672 63.158 4.92 0.00 42.80 4.35
4455 4662 3.678717 ATCCGCGTCCGTTCGTGAG 62.679 63.158 4.92 3.11 42.80 3.51
4460 4667 3.764049 GTCCGTTCGTGAGCGCAC 61.764 66.667 11.47 10.93 41.67 5.34
4469 4676 1.421485 GTGAGCGCACGAATCTTGG 59.579 57.895 11.47 0.00 34.94 3.61
4470 4677 2.390599 TGAGCGCACGAATCTTGGC 61.391 57.895 11.47 0.00 0.00 4.52
4471 4678 2.358615 AGCGCACGAATCTTGGCA 60.359 55.556 11.47 0.00 0.00 4.92
4472 4679 1.709147 GAGCGCACGAATCTTGGCAT 61.709 55.000 11.47 0.00 0.00 4.40
4473 4680 0.461870 AGCGCACGAATCTTGGCATA 60.462 50.000 11.47 0.00 0.00 3.14
4474 4681 0.588252 GCGCACGAATCTTGGCATAT 59.412 50.000 0.30 0.00 0.00 1.78
4475 4682 1.002468 GCGCACGAATCTTGGCATATT 60.002 47.619 0.30 0.00 0.00 1.28
4476 4683 2.541588 GCGCACGAATCTTGGCATATTT 60.542 45.455 0.30 0.00 0.00 1.40
4477 4684 3.291585 CGCACGAATCTTGGCATATTTC 58.708 45.455 0.00 0.00 0.00 2.17
4478 4685 3.002656 CGCACGAATCTTGGCATATTTCT 59.997 43.478 0.00 0.00 0.00 2.52
4479 4686 4.211164 CGCACGAATCTTGGCATATTTCTA 59.789 41.667 0.00 0.00 0.00 2.10
4480 4687 5.613360 CGCACGAATCTTGGCATATTTCTAG 60.613 44.000 0.00 0.00 0.00 2.43
4481 4688 5.237344 GCACGAATCTTGGCATATTTCTAGT 59.763 40.000 0.00 0.00 0.00 2.57
4482 4689 6.653183 CACGAATCTTGGCATATTTCTAGTG 58.347 40.000 0.00 0.00 0.00 2.74
4483 4690 5.237344 ACGAATCTTGGCATATTTCTAGTGC 59.763 40.000 0.00 0.00 38.12 4.40
4490 4697 4.974103 GCATATTTCTAGTGCCACGTAG 57.026 45.455 0.00 0.00 32.88 3.51
4491 4698 3.741344 GCATATTTCTAGTGCCACGTAGG 59.259 47.826 0.00 0.00 41.84 3.18
4492 4699 4.500887 GCATATTTCTAGTGCCACGTAGGA 60.501 45.833 8.04 0.00 41.22 2.94
4493 4700 3.521947 ATTTCTAGTGCCACGTAGGAC 57.478 47.619 0.00 0.00 41.22 3.85
4494 4701 2.211250 TTCTAGTGCCACGTAGGACT 57.789 50.000 13.17 13.17 41.22 3.85
4495 4702 1.460504 TCTAGTGCCACGTAGGACTG 58.539 55.000 17.70 8.26 41.22 3.51
4496 4703 0.456221 CTAGTGCCACGTAGGACTGG 59.544 60.000 17.70 11.34 41.22 4.00
4497 4704 0.038599 TAGTGCCACGTAGGACTGGA 59.961 55.000 17.70 0.00 41.22 3.86
4498 4705 1.080025 GTGCCACGTAGGACTGGAC 60.080 63.158 8.04 0.00 41.22 4.02
4499 4706 1.228769 TGCCACGTAGGACTGGACT 60.229 57.895 8.04 0.00 41.22 3.85
4500 4707 1.215647 GCCACGTAGGACTGGACTG 59.784 63.158 8.04 0.00 41.22 3.51
4501 4708 1.890894 CCACGTAGGACTGGACTGG 59.109 63.158 0.00 0.00 41.22 4.00
4502 4709 0.898789 CCACGTAGGACTGGACTGGT 60.899 60.000 0.00 0.00 41.22 4.00
4503 4710 0.243907 CACGTAGGACTGGACTGGTG 59.756 60.000 0.00 0.00 0.00 4.17
4504 4711 0.178970 ACGTAGGACTGGACTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
4505 4712 0.243907 CGTAGGACTGGACTGGTGTG 59.756 60.000 0.00 0.00 0.00 3.82
4506 4713 1.339097 GTAGGACTGGACTGGTGTGT 58.661 55.000 0.00 0.00 0.00 3.72
4507 4714 1.000955 GTAGGACTGGACTGGTGTGTG 59.999 57.143 0.00 0.00 0.00 3.82
4508 4715 1.071471 GGACTGGACTGGTGTGTGG 59.929 63.158 0.00 0.00 0.00 4.17
4509 4716 1.071471 GACTGGACTGGTGTGTGGG 59.929 63.158 0.00 0.00 0.00 4.61
4510 4717 2.281761 CTGGACTGGTGTGTGGGC 60.282 66.667 0.00 0.00 0.00 5.36
4511 4718 4.248842 TGGACTGGTGTGTGGGCG 62.249 66.667 0.00 0.00 0.00 6.13
4512 4719 4.250305 GGACTGGTGTGTGGGCGT 62.250 66.667 0.00 0.00 0.00 5.68
4513 4720 2.203153 GACTGGTGTGTGGGCGTT 60.203 61.111 0.00 0.00 0.00 4.84
4514 4721 2.203153 ACTGGTGTGTGGGCGTTC 60.203 61.111 0.00 0.00 0.00 3.95
4515 4722 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
4516 4723 2.203139 TGGTGTGTGGGCGTTCAG 60.203 61.111 0.00 0.00 0.00 3.02
4541 4748 3.656045 CCCACACGGCCGTTTCAC 61.656 66.667 32.11 0.00 0.00 3.18
4542 4749 3.656045 CCACACGGCCGTTTCACC 61.656 66.667 32.11 0.00 0.00 4.02
4543 4750 2.897846 CACACGGCCGTTTCACCA 60.898 61.111 32.11 0.00 0.00 4.17
4544 4751 2.112297 ACACGGCCGTTTCACCAT 59.888 55.556 32.11 0.00 0.00 3.55
4545 4752 0.951525 CACACGGCCGTTTCACCATA 60.952 55.000 32.11 0.00 0.00 2.74
4546 4753 0.035820 ACACGGCCGTTTCACCATAT 60.036 50.000 32.11 0.00 0.00 1.78
4547 4754 1.207570 ACACGGCCGTTTCACCATATA 59.792 47.619 32.11 0.00 0.00 0.86
4548 4755 1.864711 CACGGCCGTTTCACCATATAG 59.135 52.381 32.11 8.99 0.00 1.31
4549 4756 1.202604 ACGGCCGTTTCACCATATAGG 60.203 52.381 28.70 0.00 45.67 2.57
4550 4757 1.069513 CGGCCGTTTCACCATATAGGA 59.930 52.381 19.50 0.00 41.22 2.94
4551 4758 2.767505 GGCCGTTTCACCATATAGGAG 58.232 52.381 0.00 0.00 41.22 3.69
4552 4759 2.550208 GGCCGTTTCACCATATAGGAGG 60.550 54.545 0.00 0.00 41.22 4.30
4866 5074 4.322168 TGGGATCCTCCTAACTACTCCTA 58.678 47.826 12.58 0.00 36.57 2.94
4919 5127 3.225608 CCTCCAGTGTAGTAGGGGG 57.774 63.158 0.00 0.00 36.56 5.40
4990 5199 4.867086 ACAACCAGAAAGAAAGGAAAGGA 58.133 39.130 0.00 0.00 0.00 3.36
5085 5295 4.904853 TGCATGGGTATATGTGTAAGGAGA 59.095 41.667 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
811 830 6.118170 CCATCACTCAAGATCACAATAGGTT 58.882 40.000 0.00 0.00 0.00 3.50
989 1020 3.595758 GTGTGGCGCCAAAGCAGT 61.596 61.111 34.66 0.00 39.83 4.40
1051 1082 3.157252 TGAGAGGGAGGATGCGGC 61.157 66.667 0.00 0.00 0.00 6.53
1056 1087 2.426121 CCATGAGTCTGAGAGGGAGGAT 60.426 54.545 0.00 0.00 0.00 3.24
1057 1088 1.063341 CCATGAGTCTGAGAGGGAGGA 60.063 57.143 0.00 0.00 0.00 3.71
1060 1091 1.039785 CGCCATGAGTCTGAGAGGGA 61.040 60.000 0.00 0.00 0.00 4.20
1111 1144 3.069318 GTCGAGGAGGAGGCGGTT 61.069 66.667 0.00 0.00 0.00 4.44
1221 1254 2.445654 GAGGGAGGGAGCTCCAGG 60.446 72.222 33.29 0.00 45.06 4.45
1222 1255 1.761667 CAGAGGGAGGGAGCTCCAG 60.762 68.421 33.29 8.89 45.06 3.86
1223 1256 1.597905 ATCAGAGGGAGGGAGCTCCA 61.598 60.000 33.29 10.66 45.06 3.86
1315 1349 1.019278 TTGCTCCGAATTCGTCCAGC 61.019 55.000 25.10 25.30 37.74 4.85
1550 1586 6.872920 ACTGTACATTTTTGCAGGAAAGAAA 58.127 32.000 0.00 0.00 33.62 2.52
1565 1601 0.881118 CCCTGCGCAAACTGTACATT 59.119 50.000 13.05 0.00 0.00 2.71
1568 1604 2.561373 GCCCTGCGCAAACTGTAC 59.439 61.111 13.05 0.00 37.47 2.90
1616 1652 0.674895 GAGGTTCTGCGCCAGACATT 60.675 55.000 4.18 0.00 40.46 2.71
1655 1691 0.032540 CCGCATCGATGATCTCACCA 59.967 55.000 29.20 0.00 0.00 4.17
1784 1823 1.627834 AGGCTGAAAGAAGGACCAGAG 59.372 52.381 0.00 0.00 34.07 3.35
1925 1964 9.079833 CAACACAATATTTAGCATCAAGGAAAG 57.920 33.333 0.00 0.00 0.00 2.62
2030 2069 7.440556 CGTTCATGAAGGAATAGATCTGACATT 59.559 37.037 20.86 0.00 0.00 2.71
2194 2248 4.952957 TGTCATGTTCTTGAAACCTTGGAA 59.047 37.500 0.00 0.00 0.00 3.53
2196 2250 4.916983 TGTCATGTTCTTGAAACCTTGG 57.083 40.909 0.00 0.00 0.00 3.61
2352 2407 5.455525 CCAAACGTTTAAAGCTTCTTCACTG 59.544 40.000 14.20 0.00 0.00 3.66
2438 2493 9.236691 GTATGAACAGGTATAAATTTGTGCATG 57.763 33.333 14.19 14.19 39.52 4.06
2607 2662 1.600485 CAGTAAACCCACAACACCGTC 59.400 52.381 0.00 0.00 0.00 4.79
2645 2700 8.981659 TCTGATGAAATGGTCTATAAACAGAGA 58.018 33.333 0.00 0.00 0.00 3.10
2713 2768 1.002134 ACCCCTGCACGAAAGGATG 60.002 57.895 0.00 0.00 36.91 3.51
2888 2943 5.435686 TCTCCTTGCTAATTCCAAGCTAA 57.564 39.130 11.40 0.63 40.73 3.09
2909 2964 3.546670 CACGAGATACACTTACGGCTTTC 59.453 47.826 0.00 0.00 0.00 2.62
2916 2971 8.624701 TTTTGTATAGCACGAGATACACTTAC 57.375 34.615 0.00 0.00 38.07 2.34
2918 2973 7.321153 ACTTTTGTATAGCACGAGATACACTT 58.679 34.615 0.00 0.00 38.07 3.16
2920 2975 7.097128 CGTACTTTTGTATAGCACGAGATACAC 60.097 40.741 0.00 0.00 38.07 2.90
2992 3047 9.278734 GCTGTTTACTCAAAGCTTAATAATGAC 57.721 33.333 0.00 0.00 0.00 3.06
3009 3064 1.597027 AACAGGCGCGCTGTTTACT 60.597 52.632 30.10 18.29 41.66 2.24
3033 3088 8.924315 CATACACATGAGGTCCATTTTGTGGAA 61.924 40.741 0.00 6.61 45.76 3.53
3045 3100 3.610040 TGTCCACATACACATGAGGTC 57.390 47.619 0.00 0.00 41.99 3.85
3050 3105 5.771469 ACAACAATTGTCCACATACACATG 58.229 37.500 12.39 4.32 40.56 3.21
3051 3106 6.349280 GCTACAACAATTGTCCACATACACAT 60.349 38.462 12.39 0.00 44.12 3.21
3061 3116 5.629435 GCTTAAACTGCTACAACAATTGTCC 59.371 40.000 12.39 0.00 44.12 4.02
3072 3127 7.227512 ACAGATAATGATGGCTTAAACTGCTAC 59.772 37.037 0.00 0.00 0.00 3.58
3085 3140 5.530171 CAGTGGAAGGAACAGATAATGATGG 59.470 44.000 0.00 0.00 0.00 3.51
3104 3159 1.447317 AAACCGCTCAACTGCAGTGG 61.447 55.000 22.49 18.95 45.68 4.00
3105 3160 0.381801 AAAACCGCTCAACTGCAGTG 59.618 50.000 22.49 14.60 0.00 3.66
3117 3172 3.630312 TCCTTATGCCAATAGAAAACCGC 59.370 43.478 0.00 0.00 0.00 5.68
3126 3181 4.504864 CCTGTCGGATTCCTTATGCCAATA 60.505 45.833 0.30 0.00 0.00 1.90
3129 3184 1.140852 CCTGTCGGATTCCTTATGCCA 59.859 52.381 0.30 0.00 0.00 4.92
3250 3401 4.100344 TCTGCTGATACGCCCTGTTTATAA 59.900 41.667 0.00 0.00 0.00 0.98
3376 3531 0.249573 AACTTTTTCGGACGGAGCGA 60.250 50.000 0.00 0.00 0.00 4.93
3377 3532 0.584876 AAACTTTTTCGGACGGAGCG 59.415 50.000 0.00 0.00 0.00 5.03
3378 3533 1.332686 ACAAACTTTTTCGGACGGAGC 59.667 47.619 0.00 0.00 0.00 4.70
3381 3536 1.002142 GGGACAAACTTTTTCGGACGG 60.002 52.381 0.00 0.00 0.00 4.79
3382 3537 1.671845 TGGGACAAACTTTTTCGGACG 59.328 47.619 0.00 0.00 31.92 4.79
3390 3545 9.359853 TTGAAAGACAAGCTTGGGACAAACTTT 62.360 37.037 29.18 22.87 37.48 2.66
3391 3546 7.976078 TTGAAAGACAAGCTTGGGACAAACTT 61.976 38.462 29.18 17.46 37.48 2.66
3392 3547 6.561626 TTGAAAGACAAGCTTGGGACAAACT 61.562 40.000 29.18 13.30 37.48 2.66
3393 3548 4.381505 TTGAAAGACAAGCTTGGGACAAAC 60.382 41.667 29.18 14.35 37.48 2.93
3394 3549 3.766591 TTGAAAGACAAGCTTGGGACAAA 59.233 39.130 29.18 13.65 37.48 2.83
3395 3550 3.360867 TTGAAAGACAAGCTTGGGACAA 58.639 40.909 29.18 21.59 37.48 3.18
3396 3551 2.727123 TGAAAGACAAGCTTGGGACA 57.273 45.000 29.18 17.71 36.80 4.02
3397 3552 4.301628 CATTTGAAAGACAAGCTTGGGAC 58.698 43.478 29.18 19.11 39.77 4.46
3398 3553 3.321682 CCATTTGAAAGACAAGCTTGGGA 59.678 43.478 29.18 7.03 39.77 4.37
3399 3554 3.321682 TCCATTTGAAAGACAAGCTTGGG 59.678 43.478 29.18 16.37 39.77 4.12
3400 3555 4.589216 TCCATTTGAAAGACAAGCTTGG 57.411 40.909 29.18 12.28 39.77 3.61
3401 3556 5.535333 ACATCCATTTGAAAGACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
3402 3557 5.796424 ACATCCATTTGAAAGACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
3403 3558 6.888632 AGATACATCCATTTGAAAGACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
3404 3559 7.093322 AGATACATCCATTTGAAAGACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
3405 3560 8.341173 GCTAGATACATCCATTTGAAAGACAAG 58.659 37.037 0.00 0.00 39.77 3.16
3406 3561 7.828717 TGCTAGATACATCCATTTGAAAGACAA 59.171 33.333 0.00 0.00 36.65 3.18
3407 3562 7.280876 GTGCTAGATACATCCATTTGAAAGACA 59.719 37.037 0.00 0.00 0.00 3.41
3408 3563 7.497249 AGTGCTAGATACATCCATTTGAAAGAC 59.503 37.037 0.00 0.00 0.00 3.01
3409 3564 7.568349 AGTGCTAGATACATCCATTTGAAAGA 58.432 34.615 0.00 0.00 0.00 2.52
3410 3565 7.798596 AGTGCTAGATACATCCATTTGAAAG 57.201 36.000 0.00 0.00 0.00 2.62
3411 3566 9.109393 GTTAGTGCTAGATACATCCATTTGAAA 57.891 33.333 0.00 0.00 0.00 2.69
3412 3567 8.486210 AGTTAGTGCTAGATACATCCATTTGAA 58.514 33.333 0.00 0.00 0.00 2.69
3413 3568 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3414 3569 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3415 3570 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3416 3571 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3417 3572 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3418 3573 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3419 3574 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3431 3586 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3432 3587 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3433 3588 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3434 3589 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3435 3590 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3436 3591 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
3437 3592 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
3438 3593 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
3439 3594 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3440 3595 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3441 3596 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3442 3597 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3443 3598 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3444 3599 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3445 3600 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3446 3601 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3447 3602 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3448 3603 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3449 3604 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3450 3605 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3451 3606 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3452 3607 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3453 3608 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3454 3609 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3455 3610 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3456 3611 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3457 3612 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3458 3613 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3459 3614 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3460 3615 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3461 3616 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3462 3617 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3463 3618 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3464 3619 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3465 3620 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3466 3621 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3467 3622 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3468 3623 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3469 3624 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3470 3625 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3471 3626 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
3472 3627 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3473 3628 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3474 3629 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3475 3630 0.038744 AAAGTACTCCCTCCGTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
3476 3631 0.455005 GAAAGTACTCCCTCCGTCCG 59.545 60.000 0.00 0.00 0.00 4.79
3477 3632 1.477295 CTGAAAGTACTCCCTCCGTCC 59.523 57.143 0.00 0.00 0.00 4.79
3478 3633 2.943449 CTGAAAGTACTCCCTCCGTC 57.057 55.000 0.00 0.00 0.00 4.79
3482 3637 7.697747 TGGTAACTCACTGAAAGTACTCCCTC 61.698 46.154 0.00 0.00 42.68 4.30
3483 3638 5.930679 TGGTAACTCACTGAAAGTACTCCCT 60.931 44.000 0.00 0.00 42.68 4.20
3484 3639 4.282703 TGGTAACTCACTGAAAGTACTCCC 59.717 45.833 0.00 0.00 42.68 4.30
3485 3640 5.464030 TGGTAACTCACTGAAAGTACTCC 57.536 43.478 0.00 0.00 42.68 3.85
3486 3641 6.421202 CACTTGGTAACTCACTGAAAGTACTC 59.579 42.308 0.00 0.00 42.68 2.59
3487 3642 6.281405 CACTTGGTAACTCACTGAAAGTACT 58.719 40.000 0.00 0.00 42.68 2.73
3488 3643 5.465724 CCACTTGGTAACTCACTGAAAGTAC 59.534 44.000 0.00 0.00 42.68 2.73
3489 3644 5.607477 CCACTTGGTAACTCACTGAAAGTA 58.393 41.667 0.00 0.00 42.68 2.24
3490 3645 4.451900 CCACTTGGTAACTCACTGAAAGT 58.548 43.478 0.00 0.00 45.36 2.66
3491 3646 3.251004 GCCACTTGGTAACTCACTGAAAG 59.749 47.826 0.00 0.00 37.51 2.62
3492 3647 3.211045 GCCACTTGGTAACTCACTGAAA 58.789 45.455 0.00 0.00 37.57 2.69
3493 3648 2.486548 GGCCACTTGGTAACTCACTGAA 60.487 50.000 0.00 0.00 37.57 3.02
3494 3649 1.071699 GGCCACTTGGTAACTCACTGA 59.928 52.381 0.00 0.00 37.57 3.41
3495 3650 1.202758 TGGCCACTTGGTAACTCACTG 60.203 52.381 0.00 0.00 37.57 3.66
3496 3651 1.136828 TGGCCACTTGGTAACTCACT 58.863 50.000 0.00 0.00 37.57 3.41
3537 3692 5.868043 TGTAGCAAGTTCTTGTGATGATG 57.132 39.130 13.04 0.00 0.00 3.07
3567 3722 7.400339 TGAGTAAGGATTGACAGGTTCTTATCT 59.600 37.037 0.00 0.00 0.00 1.98
3624 3779 4.438145 CGTTCTCTGAGATAAAATCCGACG 59.562 45.833 8.42 8.13 0.00 5.12
3634 3789 2.025155 GACTGGGCGTTCTCTGAGATA 58.975 52.381 8.42 0.00 0.00 1.98
3635 3790 0.820871 GACTGGGCGTTCTCTGAGAT 59.179 55.000 8.42 0.00 0.00 2.75
3766 3922 1.556911 CACAGTCCAGATGCCCTAAGT 59.443 52.381 0.00 0.00 0.00 2.24
3819 3975 1.405821 CTGCGTCGAAGGTAGAGGAAT 59.594 52.381 0.00 0.00 0.00 3.01
3885 4044 0.035056 GAGCTAAGTGGGTGGCATGT 60.035 55.000 0.00 0.00 0.00 3.21
4010 4169 7.980099 AGATTCTGTTTACAGTAATTCCTACGG 59.020 37.037 9.53 0.00 44.12 4.02
4044 4203 7.741027 AGAATGACAGGCATCTACATTATTG 57.259 36.000 0.00 0.00 35.78 1.90
4078 4237 4.321230 CCACTTTGGCACTTTTATCCTGTC 60.321 45.833 0.00 0.00 0.00 3.51
4160 4319 3.412386 CCGATGAACTGGAAAGAGGTTT 58.588 45.455 0.00 0.00 0.00 3.27
4161 4320 2.876079 GCCGATGAACTGGAAAGAGGTT 60.876 50.000 0.00 0.00 0.00 3.50
4162 4321 1.339151 GCCGATGAACTGGAAAGAGGT 60.339 52.381 0.00 0.00 0.00 3.85
4163 4322 1.065854 AGCCGATGAACTGGAAAGAGG 60.066 52.381 0.00 0.00 0.00 3.69
4193 4352 2.671177 CGTTGCCTGCTTGAGACCG 61.671 63.158 0.00 0.00 0.00 4.79
4211 4410 4.911610 GTGTACGCATCATCATAAAATGGC 59.088 41.667 0.39 0.00 0.00 4.40
4234 4433 4.489683 GTGTACGCAAAGCACGTG 57.510 55.556 12.28 12.28 44.79 4.49
4237 4436 1.721133 GCACGTGTACGCAAAGCAC 60.721 57.895 18.38 0.00 44.43 4.40
4238 4437 1.433053 AAGCACGTGTACGCAAAGCA 61.433 50.000 18.38 0.00 44.43 3.91
4239 4438 0.316689 AAAGCACGTGTACGCAAAGC 60.317 50.000 18.38 6.90 44.43 3.51
4240 4439 1.385038 CAAAGCACGTGTACGCAAAG 58.615 50.000 18.38 0.00 44.43 2.77
4241 4440 0.028242 CCAAAGCACGTGTACGCAAA 59.972 50.000 18.38 0.00 44.43 3.68
4242 4441 1.090625 ACCAAAGCACGTGTACGCAA 61.091 50.000 18.38 0.00 44.43 4.85
4243 4442 1.090625 AACCAAAGCACGTGTACGCA 61.091 50.000 18.38 0.00 44.43 5.24
4244 4443 0.028374 AAACCAAAGCACGTGTACGC 59.972 50.000 18.38 1.83 44.43 4.42
4245 4444 1.328069 TCAAACCAAAGCACGTGTACG 59.672 47.619 18.38 2.43 46.33 3.67
4246 4445 2.096174 TGTCAAACCAAAGCACGTGTAC 59.904 45.455 18.38 0.57 0.00 2.90
4247 4446 2.357075 TGTCAAACCAAAGCACGTGTA 58.643 42.857 18.38 0.00 0.00 2.90
4248 4447 1.169577 TGTCAAACCAAAGCACGTGT 58.830 45.000 18.38 0.68 0.00 4.49
4249 4448 1.917303 GTTGTCAAACCAAAGCACGTG 59.083 47.619 12.28 12.28 0.00 4.49
4250 4449 1.542030 TGTTGTCAAACCAAAGCACGT 59.458 42.857 0.00 0.00 35.25 4.49
4251 4450 1.917303 GTGTTGTCAAACCAAAGCACG 59.083 47.619 0.00 0.00 35.25 5.34
4307 4506 1.135939 GGGCACCGCGTTTTACATC 59.864 57.895 4.92 0.00 40.86 3.06
4371 4578 7.060864 GCGTTAACATTTCCGTATTTAAAGCAA 59.939 33.333 6.39 0.00 37.20 3.91
4383 4590 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
4384 4591 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
4385 4592 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
4386 4593 1.310904 ACGTGTGGGCGTTAACATTT 58.689 45.000 6.39 0.00 43.04 2.32
4387 4594 2.166821 TACGTGTGGGCGTTAACATT 57.833 45.000 6.39 0.00 43.04 2.71
4388 4595 2.004017 CATACGTGTGGGCGTTAACAT 58.996 47.619 4.09 0.00 43.04 2.71
4389 4596 1.000618 TCATACGTGTGGGCGTTAACA 59.999 47.619 12.66 0.00 43.04 2.41
4390 4597 1.657094 CTCATACGTGTGGGCGTTAAC 59.343 52.381 12.66 0.00 43.04 2.01
4391 4598 1.999048 CTCATACGTGTGGGCGTTAA 58.001 50.000 12.66 0.00 43.04 2.01
4392 4599 0.458889 GCTCATACGTGTGGGCGTTA 60.459 55.000 21.75 0.00 43.04 3.18
4393 4600 1.740296 GCTCATACGTGTGGGCGTT 60.740 57.895 21.75 0.00 43.04 4.84
4396 4603 2.125673 ACGCTCATACGTGTGGGC 60.126 61.111 25.61 25.61 46.28 5.36
4402 4609 5.544293 GCAAGATGCAAACGCTCATACGT 62.544 47.826 0.00 0.00 45.85 3.57
4403 4610 2.697363 CAAGATGCAAACGCTCATACG 58.303 47.619 0.00 0.00 39.50 3.06
4404 4611 2.444351 GCAAGATGCAAACGCTCATAC 58.556 47.619 0.00 0.00 44.26 2.39
4405 4612 2.830772 GCAAGATGCAAACGCTCATA 57.169 45.000 0.00 0.00 44.26 2.15
4406 4613 3.708195 GCAAGATGCAAACGCTCAT 57.292 47.368 0.00 0.00 44.26 2.90
4416 4623 4.465512 CGCGTGTGGGCAAGATGC 62.466 66.667 0.00 0.00 44.08 3.91
4417 4624 2.616330 AACGCGTGTGGGCAAGATG 61.616 57.895 14.98 0.00 0.00 2.90
4418 4625 2.281484 AACGCGTGTGGGCAAGAT 60.281 55.556 14.98 0.00 0.00 2.40
4419 4626 3.276091 CAACGCGTGTGGGCAAGA 61.276 61.111 14.98 0.00 0.00 3.02
4420 4627 2.513065 GATCAACGCGTGTGGGCAAG 62.513 60.000 14.98 0.00 0.00 4.01
4421 4628 2.593148 ATCAACGCGTGTGGGCAA 60.593 55.556 14.98 0.00 0.00 4.52
4422 4629 3.047280 GATCAACGCGTGTGGGCA 61.047 61.111 14.98 0.00 0.00 5.36
4423 4630 3.799755 GGATCAACGCGTGTGGGC 61.800 66.667 14.98 8.82 0.00 5.36
4424 4631 3.487202 CGGATCAACGCGTGTGGG 61.487 66.667 14.98 2.93 0.00 4.61
4432 4639 2.785105 GAACGGACGCGGATCAACG 61.785 63.158 12.47 7.92 0.00 4.10
4433 4640 2.785105 CGAACGGACGCGGATCAAC 61.785 63.158 12.47 0.00 0.00 3.18
4434 4641 2.505337 CGAACGGACGCGGATCAA 60.505 61.111 12.47 0.00 0.00 2.57
4435 4642 3.740397 ACGAACGGACGCGGATCA 61.740 61.111 12.47 0.00 36.70 2.92
4436 4643 3.245315 CACGAACGGACGCGGATC 61.245 66.667 12.47 0.00 36.70 3.36
4437 4644 3.678717 CTCACGAACGGACGCGGAT 62.679 63.158 12.47 0.00 36.70 4.18
4438 4645 4.394078 CTCACGAACGGACGCGGA 62.394 66.667 12.47 0.00 36.70 5.54
4443 4650 3.764049 GTGCGCTCACGAACGGAC 61.764 66.667 9.73 0.00 38.28 4.79
4451 4658 1.421485 CCAAGATTCGTGCGCTCAC 59.579 57.895 9.73 0.00 39.78 3.51
4452 4659 2.390599 GCCAAGATTCGTGCGCTCA 61.391 57.895 9.73 0.00 0.00 4.26
4453 4660 1.709147 ATGCCAAGATTCGTGCGCTC 61.709 55.000 9.73 3.51 0.00 5.03
4454 4661 0.461870 TATGCCAAGATTCGTGCGCT 60.462 50.000 9.73 0.00 0.00 5.92
4455 4662 0.588252 ATATGCCAAGATTCGTGCGC 59.412 50.000 0.00 0.00 0.00 6.09
4456 4663 3.002656 AGAAATATGCCAAGATTCGTGCG 59.997 43.478 0.00 0.00 0.00 5.34
4457 4664 4.558538 AGAAATATGCCAAGATTCGTGC 57.441 40.909 0.00 0.00 0.00 5.34
4458 4665 6.653183 CACTAGAAATATGCCAAGATTCGTG 58.347 40.000 0.00 0.00 0.00 4.35
4459 4666 5.237344 GCACTAGAAATATGCCAAGATTCGT 59.763 40.000 0.00 0.00 33.06 3.85
4460 4667 5.683859 GCACTAGAAATATGCCAAGATTCG 58.316 41.667 0.00 0.00 33.06 3.34
4469 4676 3.741344 CCTACGTGGCACTAGAAATATGC 59.259 47.826 16.72 0.00 38.68 3.14
4470 4677 4.982916 GTCCTACGTGGCACTAGAAATATG 59.017 45.833 16.72 0.00 35.26 1.78
4471 4678 4.894114 AGTCCTACGTGGCACTAGAAATAT 59.106 41.667 16.72 0.00 35.26 1.28
4472 4679 4.097437 CAGTCCTACGTGGCACTAGAAATA 59.903 45.833 16.72 0.00 35.26 1.40
4473 4680 3.097614 AGTCCTACGTGGCACTAGAAAT 58.902 45.455 16.72 0.00 35.26 2.17
4474 4681 2.230508 CAGTCCTACGTGGCACTAGAAA 59.769 50.000 16.72 5.78 35.26 2.52
4475 4682 1.816835 CAGTCCTACGTGGCACTAGAA 59.183 52.381 16.72 0.00 35.26 2.10
4476 4683 1.460504 CAGTCCTACGTGGCACTAGA 58.539 55.000 16.72 3.95 35.26 2.43
4477 4684 0.456221 CCAGTCCTACGTGGCACTAG 59.544 60.000 16.72 14.90 35.26 2.57
4478 4685 0.038599 TCCAGTCCTACGTGGCACTA 59.961 55.000 16.72 6.37 33.43 2.74
4479 4686 1.228769 TCCAGTCCTACGTGGCACT 60.229 57.895 16.72 0.00 33.43 4.40
4480 4687 1.080025 GTCCAGTCCTACGTGGCAC 60.080 63.158 7.79 7.79 33.43 5.01
4481 4688 1.228769 AGTCCAGTCCTACGTGGCA 60.229 57.895 0.00 0.00 33.43 4.92
4482 4689 1.215647 CAGTCCAGTCCTACGTGGC 59.784 63.158 0.00 0.00 33.43 5.01
4483 4690 0.898789 ACCAGTCCAGTCCTACGTGG 60.899 60.000 0.00 0.00 34.87 4.94
4484 4691 0.243907 CACCAGTCCAGTCCTACGTG 59.756 60.000 0.00 0.00 0.00 4.49
4485 4692 0.178970 ACACCAGTCCAGTCCTACGT 60.179 55.000 0.00 0.00 0.00 3.57
4486 4693 0.243907 CACACCAGTCCAGTCCTACG 59.756 60.000 0.00 0.00 0.00 3.51
4487 4694 1.000955 CACACACCAGTCCAGTCCTAC 59.999 57.143 0.00 0.00 0.00 3.18
4488 4695 1.338107 CACACACCAGTCCAGTCCTA 58.662 55.000 0.00 0.00 0.00 2.94
4489 4696 1.410850 CCACACACCAGTCCAGTCCT 61.411 60.000 0.00 0.00 0.00 3.85
4490 4697 1.071471 CCACACACCAGTCCAGTCC 59.929 63.158 0.00 0.00 0.00 3.85
4491 4698 1.071471 CCCACACACCAGTCCAGTC 59.929 63.158 0.00 0.00 0.00 3.51
4492 4699 3.120086 GCCCACACACCAGTCCAGT 62.120 63.158 0.00 0.00 0.00 4.00
4493 4700 2.281761 GCCCACACACCAGTCCAG 60.282 66.667 0.00 0.00 0.00 3.86
4494 4701 4.248842 CGCCCACACACCAGTCCA 62.249 66.667 0.00 0.00 0.00 4.02
4495 4702 3.767630 AACGCCCACACACCAGTCC 62.768 63.158 0.00 0.00 0.00 3.85
4496 4703 2.203153 AACGCCCACACACCAGTC 60.203 61.111 0.00 0.00 0.00 3.51
4497 4704 2.203153 GAACGCCCACACACCAGT 60.203 61.111 0.00 0.00 0.00 4.00
4498 4705 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
4499 4706 2.203139 CTGAACGCCCACACACCA 60.203 61.111 0.00 0.00 0.00 4.17
4500 4707 3.660111 GCTGAACGCCCACACACC 61.660 66.667 0.00 0.00 0.00 4.16
4524 4731 3.656045 GTGAAACGGCCGTGTGGG 61.656 66.667 34.95 0.21 39.58 4.61
4525 4732 3.656045 GGTGAAACGGCCGTGTGG 61.656 66.667 34.95 1.14 38.12 4.17
4526 4733 0.951525 TATGGTGAAACGGCCGTGTG 60.952 55.000 34.95 1.63 38.12 3.82
4527 4734 0.035820 ATATGGTGAAACGGCCGTGT 60.036 50.000 34.95 29.73 38.12 4.49
4528 4735 1.864711 CTATATGGTGAAACGGCCGTG 59.135 52.381 34.95 10.84 38.12 4.94
4529 4736 1.202604 CCTATATGGTGAAACGGCCGT 60.203 52.381 28.70 28.70 38.12 5.68
4530 4737 1.069513 TCCTATATGGTGAAACGGCCG 59.930 52.381 26.86 26.86 38.12 6.13
4531 4738 2.550208 CCTCCTATATGGTGAAACGGCC 60.550 54.545 0.00 0.00 38.12 6.13
4532 4739 2.550208 CCCTCCTATATGGTGAAACGGC 60.550 54.545 0.00 0.00 38.12 5.68
4533 4740 2.038557 CCCCTCCTATATGGTGAAACGG 59.961 54.545 0.00 0.00 38.12 4.44
4534 4741 2.550208 GCCCCTCCTATATGGTGAAACG 60.550 54.545 0.00 0.00 38.12 3.60
4535 4742 2.711547 AGCCCCTCCTATATGGTGAAAC 59.288 50.000 0.00 0.00 37.07 2.78
4536 4743 2.711009 CAGCCCCTCCTATATGGTGAAA 59.289 50.000 0.00 0.00 37.07 2.69
4537 4744 2.338809 CAGCCCCTCCTATATGGTGAA 58.661 52.381 0.00 0.00 37.07 3.18
4538 4745 1.485019 CCAGCCCCTCCTATATGGTGA 60.485 57.143 0.00 0.00 37.07 4.02
4539 4746 0.987294 CCAGCCCCTCCTATATGGTG 59.013 60.000 0.00 0.00 37.07 4.17
4540 4747 0.573279 ACCAGCCCCTCCTATATGGT 59.427 55.000 0.00 0.00 36.24 3.55
4541 4748 0.987294 CACCAGCCCCTCCTATATGG 59.013 60.000 0.00 0.00 37.10 2.74
4542 4749 1.349026 CACACCAGCCCCTCCTATATG 59.651 57.143 0.00 0.00 0.00 1.78
4543 4750 1.223077 TCACACCAGCCCCTCCTATAT 59.777 52.381 0.00 0.00 0.00 0.86
4544 4751 0.639943 TCACACCAGCCCCTCCTATA 59.360 55.000 0.00 0.00 0.00 1.31
4545 4752 0.983378 GTCACACCAGCCCCTCCTAT 60.983 60.000 0.00 0.00 0.00 2.57
4546 4753 1.612442 GTCACACCAGCCCCTCCTA 60.612 63.158 0.00 0.00 0.00 2.94
4547 4754 2.930562 GTCACACCAGCCCCTCCT 60.931 66.667 0.00 0.00 0.00 3.69
4548 4755 4.394712 CGTCACACCAGCCCCTCC 62.395 72.222 0.00 0.00 0.00 4.30
4571 4778 7.409697 GTGCATGATTAGTGTACGATTGAATT 58.590 34.615 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.